Multiple sequence alignment - TraesCS4D01G180700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G180700 chr4D 100.000 5558 0 0 1 5558 314586268 314580711 0.000000e+00 10264.0
1 TraesCS4D01G180700 chr4D 92.203 295 22 1 2222 2515 329463319 329463613 3.100000e-112 416.0
2 TraesCS4D01G180700 chr4B 97.125 2087 35 10 2514 4598 392368487 392366424 0.000000e+00 3498.0
3 TraesCS4D01G180700 chr4B 94.460 1408 52 6 827 2233 392369865 392368483 0.000000e+00 2145.0
4 TraesCS4D01G180700 chr4B 91.193 545 42 4 1 541 392373891 392373349 0.000000e+00 736.0
5 TraesCS4D01G180700 chr4B 91.922 359 14 5 5214 5557 392365538 392365180 6.470000e-134 488.0
6 TraesCS4D01G180700 chr4B 89.960 249 9 4 4612 4844 392366337 392366089 1.940000e-79 307.0
7 TraesCS4D01G180700 chr4B 92.857 210 15 0 4878 5087 392365748 392365539 7.000000e-79 305.0
8 TraesCS4D01G180700 chr4A 97.154 1511 30 5 3095 4598 161429517 161431021 0.000000e+00 2540.0
9 TraesCS4D01G180700 chr4A 95.696 1185 30 5 827 2010 161427712 161428876 0.000000e+00 1886.0
10 TraesCS4D01G180700 chr4A 92.620 542 38 2 1 541 161426839 161427379 0.000000e+00 778.0
11 TraesCS4D01G180700 chr4A 95.781 474 16 2 2511 2980 161429045 161429518 0.000000e+00 761.0
12 TraesCS4D01G180700 chr4A 93.855 179 10 1 2055 2233 161428875 161429052 9.180000e-68 268.0
13 TraesCS4D01G180700 chr4A 94.231 52 3 0 4620 4671 161431113 161431164 4.620000e-11 80.5
14 TraesCS4D01G180700 chr7D 79.448 725 95 28 4817 5505 199356639 199355933 1.090000e-126 464.0
15 TraesCS4D01G180700 chr7D 94.035 285 15 2 2235 2517 550980000 550979716 1.110000e-116 431.0
16 TraesCS4D01G180700 chr7D 76.301 692 118 29 4849 5505 413119119 413118439 1.490000e-85 327.0
17 TraesCS4D01G180700 chr7A 95.789 285 11 1 2232 2515 547571423 547571707 5.070000e-125 459.0
18 TraesCS4D01G180700 chr7A 91.772 158 13 0 5348 5505 209155991 209155834 2.610000e-53 220.0
19 TraesCS4D01G180700 chr2D 94.810 289 14 1 2230 2517 273235912 273235624 3.050000e-122 449.0
20 TraesCS4D01G180700 chr2D 94.035 285 16 1 2232 2515 371841093 371841377 1.110000e-116 431.0
21 TraesCS4D01G180700 chr2D 79.124 388 48 18 5152 5509 358075653 358075269 2.590000e-58 237.0
22 TraesCS4D01G180700 chr3D 93.426 289 18 1 2230 2517 382108050 382108338 1.430000e-115 427.0
23 TraesCS4D01G180700 chr3D 93.127 291 16 2 2229 2515 111181230 111181520 1.850000e-114 424.0
24 TraesCS4D01G180700 chr3D 79.276 497 65 16 5053 5516 576774228 576773737 4.180000e-81 313.0
25 TraesCS4D01G180700 chr3D 78.926 503 64 23 5034 5505 355609212 355609703 2.520000e-78 303.0
26 TraesCS4D01G180700 chr3D 92.969 128 8 1 2979 3106 609106310 609106184 9.510000e-43 185.0
27 TraesCS4D01G180700 chr2A 93.684 285 17 1 2232 2515 99129977 99130261 5.150000e-115 425.0
28 TraesCS4D01G180700 chr2A 78.866 388 49 21 5152 5509 480528655 480528271 1.200000e-56 231.0
29 TraesCS4D01G180700 chr1D 93.684 285 17 1 2235 2518 130284159 130283875 5.150000e-115 425.0
30 TraesCS4D01G180700 chr1D 78.866 388 49 18 5152 5509 319540643 319540259 1.200000e-56 231.0
31 TraesCS4D01G180700 chr1D 74.164 658 121 25 4858 5478 461274694 461274049 1.560000e-55 228.0
32 TraesCS4D01G180700 chr1D 93.600 125 7 1 2973 3097 116548335 116548458 9.510000e-43 185.0
33 TraesCS4D01G180700 chr6D 79.066 664 97 18 4874 5505 453329358 453330011 8.610000e-113 418.0
34 TraesCS4D01G180700 chr6D 79.438 569 83 19 4968 5505 363942107 363942672 6.800000e-99 372.0
35 TraesCS4D01G180700 chr6D 76.705 528 101 18 4774 5296 23044539 23045049 1.970000e-69 274.0
36 TraesCS4D01G180700 chr6D 82.206 281 35 10 5037 5313 315977843 315978112 1.560000e-55 228.0
37 TraesCS4D01G180700 chr6D 92.308 130 8 2 2973 3101 17054998 17055126 3.420000e-42 183.0
38 TraesCS4D01G180700 chr3A 79.681 502 61 23 5034 5504 477801194 477800703 1.930000e-84 324.0
39 TraesCS4D01G180700 chr3A 92.188 128 10 0 2979 3106 607108182 607108055 1.230000e-41 182.0
40 TraesCS4D01G180700 chr5D 77.154 499 92 19 4811 5299 57854103 57853617 2.550000e-68 270.0
41 TraesCS4D01G180700 chr5D 96.639 119 4 0 2979 3097 118840568 118840450 1.220000e-46 198.0
42 TraesCS4D01G180700 chr6B 75.237 634 110 25 4880 5477 202341216 202341838 1.990000e-64 257.0
43 TraesCS4D01G180700 chr5B 79.747 316 57 6 4932 5243 60779539 60779851 7.250000e-54 222.0
44 TraesCS4D01G180700 chr5B 74.830 441 94 14 4814 5244 638412599 638413032 3.420000e-42 183.0
45 TraesCS4D01G180700 chr6A 94.531 128 7 0 2977 3104 147303658 147303785 1.220000e-46 198.0
46 TraesCS4D01G180700 chr7B 95.763 118 5 0 2979 3096 81424989 81425106 2.040000e-44 191.0
47 TraesCS4D01G180700 chr7B 95.763 118 5 0 2979 3096 152472992 152472875 2.040000e-44 191.0
48 TraesCS4D01G180700 chr7B 76.519 362 62 16 4835 5183 4238295 4238646 5.720000e-40 176.0
49 TraesCS4D01G180700 chr7B 84.906 53 7 1 285 336 126119815 126119763 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G180700 chr4D 314580711 314586268 5557 True 10264.00 10264 100.0000 1 5558 1 chr4D.!!$R1 5557
1 TraesCS4D01G180700 chr4B 392365180 392373891 8711 True 1246.50 3498 92.9195 1 5557 6 chr4B.!!$R1 5556
2 TraesCS4D01G180700 chr4A 161426839 161431164 4325 False 1052.25 2540 94.8895 1 4671 6 chr4A.!!$F1 4670
3 TraesCS4D01G180700 chr7D 199355933 199356639 706 True 464.00 464 79.4480 4817 5505 1 chr7D.!!$R1 688
4 TraesCS4D01G180700 chr7D 413118439 413119119 680 True 327.00 327 76.3010 4849 5505 1 chr7D.!!$R2 656
5 TraesCS4D01G180700 chr1D 461274049 461274694 645 True 228.00 228 74.1640 4858 5478 1 chr1D.!!$R3 620
6 TraesCS4D01G180700 chr6D 453329358 453330011 653 False 418.00 418 79.0660 4874 5505 1 chr6D.!!$F5 631
7 TraesCS4D01G180700 chr6D 363942107 363942672 565 False 372.00 372 79.4380 4968 5505 1 chr6D.!!$F4 537
8 TraesCS4D01G180700 chr6D 23044539 23045049 510 False 274.00 274 76.7050 4774 5296 1 chr6D.!!$F2 522
9 TraesCS4D01G180700 chr6B 202341216 202341838 622 False 257.00 257 75.2370 4880 5477 1 chr6B.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 710 0.107557 AACGTTCGGGGTGTCAGTTT 60.108 50.0 0.00 0.00 0.0 2.66 F
1006 4244 0.244994 CTTCTCCTGTCCTGTCCACG 59.755 60.0 0.00 0.00 0.0 4.94 F
1478 4724 0.458889 CGAGGTGGGCATGCAATTTG 60.459 55.0 21.36 0.04 0.0 2.32 F
2995 6247 0.329261 TCTACTCCCTCCGTCCGAAA 59.671 55.0 0.00 0.00 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 5167 0.696501 ACATAGTCCGGCAAAAGGGT 59.303 50.000 0.00 0.0 0.00 4.34 R
2234 5482 0.974010 TTACTCCCCACGGTGGCTAG 60.974 60.000 21.88 20.5 35.79 3.42 R
3071 6323 1.338389 CCCTCCGTCCGAAAAAGCTTA 60.338 52.381 0.00 0.0 0.00 3.09 R
4723 8061 0.609131 CCGATGTGGGAAGGCAAACT 60.609 55.000 0.00 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.665833 AAAACTGGACCTTTTACCTTGC 57.334 40.909 0.00 0.00 0.00 4.01
111 112 5.063017 TCTATATTCTCGACCCCTCAAGT 57.937 43.478 0.00 0.00 0.00 3.16
182 183 6.920758 CGTAAAATTTCACCACCATTTCTTGA 59.079 34.615 0.00 0.00 0.00 3.02
186 187 3.159213 TCACCACCATTTCTTGAGCAT 57.841 42.857 0.00 0.00 0.00 3.79
192 193 4.095483 CCACCATTTCTTGAGCATAGTGTC 59.905 45.833 0.00 0.00 0.00 3.67
209 210 8.076178 GCATAGTGTCAATTTTGTGACTAAAGT 58.924 33.333 6.85 0.00 46.70 2.66
239 240 7.118496 TGTATAATGGTTTTATGCCTTTGGG 57.882 36.000 0.00 0.00 0.00 4.12
338 341 5.302568 ACTTTCATGGTGTTGACATTGACAT 59.697 36.000 0.00 0.00 0.00 3.06
368 371 2.653726 TGTGGACAAGACATGCAGTTT 58.346 42.857 0.00 0.00 0.00 2.66
402 405 2.574006 TTGCTTCTCTCATGCCACTT 57.426 45.000 0.00 0.00 0.00 3.16
403 406 2.574006 TGCTTCTCTCATGCCACTTT 57.426 45.000 0.00 0.00 0.00 2.66
416 419 4.944962 TGCCACTTTATGATCAACTTCG 57.055 40.909 0.00 0.00 0.00 3.79
459 462 7.707624 TTGTTGATTCTGCTAATGAGGAAAT 57.292 32.000 0.00 0.00 0.00 2.17
518 524 6.656632 TTTATATCACAAACCAAGCCAACA 57.343 33.333 0.00 0.00 0.00 3.33
523 529 1.226831 AAACCAAGCCAACAACGCG 60.227 52.632 3.53 3.53 0.00 6.01
541 547 1.153353 CGTACTCACACGGGCATTTT 58.847 50.000 0.00 0.00 38.26 1.82
554 590 2.993220 GGGCATTTTCTAACCTTTTGCG 59.007 45.455 0.00 0.00 0.00 4.85
563 599 2.597578 AACCTTTTGCGAGGGGTATT 57.402 45.000 5.69 0.00 41.31 1.89
625 661 2.361104 GGACGCAAATCCCTGGCA 60.361 61.111 0.00 0.00 31.94 4.92
629 665 1.112315 ACGCAAATCCCTGGCAAACA 61.112 50.000 0.00 0.00 0.00 2.83
642 678 0.667184 GCAAACAATCGCCAACAGGG 60.667 55.000 0.00 0.00 40.85 4.45
643 679 0.958091 CAAACAATCGCCAACAGGGA 59.042 50.000 0.00 0.00 42.39 4.20
645 681 1.176527 AACAATCGCCAACAGGGATG 58.823 50.000 0.00 0.00 46.80 3.51
646 682 0.680921 ACAATCGCCAACAGGGATGG 60.681 55.000 0.00 0.00 46.80 3.51
651 687 4.850193 CCAACAGGGATGGCAACT 57.150 55.556 0.00 0.00 40.01 3.16
652 688 2.269978 CCAACAGGGATGGCAACTG 58.730 57.895 13.46 13.46 40.01 3.16
653 689 1.588082 CAACAGGGATGGCAACTGC 59.412 57.895 14.56 0.00 41.14 4.40
654 690 1.973281 AACAGGGATGGCAACTGCG 60.973 57.895 14.56 0.00 43.26 5.18
655 691 2.046023 CAGGGATGGCAACTGCGA 60.046 61.111 0.00 0.00 43.26 5.10
656 692 1.675310 CAGGGATGGCAACTGCGAA 60.675 57.895 0.00 0.00 43.26 4.70
657 693 1.675641 AGGGATGGCAACTGCGAAC 60.676 57.895 0.00 0.00 43.26 3.95
658 694 2.480555 GGATGGCAACTGCGAACG 59.519 61.111 0.00 0.00 43.26 3.95
659 695 2.325082 GGATGGCAACTGCGAACGT 61.325 57.895 0.00 0.00 43.26 3.99
660 696 1.574428 GATGGCAACTGCGAACGTT 59.426 52.632 0.00 0.00 43.26 3.99
661 697 0.452784 GATGGCAACTGCGAACGTTC 60.453 55.000 18.47 18.47 43.26 3.95
662 698 2.170260 ATGGCAACTGCGAACGTTCG 62.170 55.000 38.82 38.82 46.00 3.95
670 706 2.027897 CGAACGTTCGGGGTGTCA 59.972 61.111 36.53 0.00 46.30 3.58
671 707 2.019951 CGAACGTTCGGGGTGTCAG 61.020 63.158 36.53 10.79 46.30 3.51
672 708 1.068585 GAACGTTCGGGGTGTCAGT 59.931 57.895 13.36 0.00 0.00 3.41
673 709 0.531311 GAACGTTCGGGGTGTCAGTT 60.531 55.000 13.36 0.00 0.00 3.16
674 710 0.107557 AACGTTCGGGGTGTCAGTTT 60.108 50.000 0.00 0.00 0.00 2.66
675 711 0.107557 ACGTTCGGGGTGTCAGTTTT 60.108 50.000 0.00 0.00 0.00 2.43
676 712 1.018910 CGTTCGGGGTGTCAGTTTTT 58.981 50.000 0.00 0.00 0.00 1.94
677 713 1.268335 CGTTCGGGGTGTCAGTTTTTG 60.268 52.381 0.00 0.00 0.00 2.44
678 714 1.746787 GTTCGGGGTGTCAGTTTTTGT 59.253 47.619 0.00 0.00 0.00 2.83
679 715 1.384525 TCGGGGTGTCAGTTTTTGTG 58.615 50.000 0.00 0.00 0.00 3.33
680 716 0.383949 CGGGGTGTCAGTTTTTGTGG 59.616 55.000 0.00 0.00 0.00 4.17
681 717 1.480789 GGGGTGTCAGTTTTTGTGGT 58.519 50.000 0.00 0.00 0.00 4.16
682 718 1.136110 GGGGTGTCAGTTTTTGTGGTG 59.864 52.381 0.00 0.00 0.00 4.17
683 719 1.136110 GGGTGTCAGTTTTTGTGGTGG 59.864 52.381 0.00 0.00 0.00 4.61
684 720 1.136110 GGTGTCAGTTTTTGTGGTGGG 59.864 52.381 0.00 0.00 0.00 4.61
685 721 1.136110 GTGTCAGTTTTTGTGGTGGGG 59.864 52.381 0.00 0.00 0.00 4.96
686 722 0.750249 GTCAGTTTTTGTGGTGGGGG 59.250 55.000 0.00 0.00 0.00 5.40
687 723 0.336737 TCAGTTTTTGTGGTGGGGGT 59.663 50.000 0.00 0.00 0.00 4.95
691 727 1.617947 TTTTTGTGGTGGGGGTGCAC 61.618 55.000 8.80 8.80 0.00 4.57
703 739 3.224269 GGGGGTGCACTTTACAAAACTA 58.776 45.455 17.98 0.00 0.00 2.24
709 745 5.221165 GGTGCACTTTACAAAACTACCATGT 60.221 40.000 17.98 0.00 0.00 3.21
713 749 6.238648 GCACTTTACAAAACTACCATGTCAGT 60.239 38.462 0.00 0.00 0.00 3.41
787 826 2.464459 GGGCGTTCGCTGGAATCTG 61.464 63.158 16.40 0.00 34.05 2.90
790 829 1.991430 CGTTCGCTGGAATCTGACG 59.009 57.895 0.00 0.00 34.05 4.35
818 857 2.604855 CGAACGTTCGCCAGATAGCTAT 60.605 50.000 34.54 5.76 44.26 2.97
819 858 2.423926 ACGTTCGCCAGATAGCTATG 57.576 50.000 11.94 0.00 0.00 2.23
825 864 1.151668 GCCAGATAGCTATGCCGTTG 58.848 55.000 11.94 1.88 0.00 4.10
857 4095 1.276138 CAATTCTGGGGCTCCAAAACC 59.724 52.381 6.84 0.00 43.51 3.27
957 4195 1.617947 ATCTCACCAACCGGAGCCTC 61.618 60.000 9.46 0.00 35.59 4.70
1006 4244 0.244994 CTTCTCCTGTCCTGTCCACG 59.755 60.000 0.00 0.00 0.00 4.94
1045 4283 3.844090 GCTCCGCCTCTGACTCCC 61.844 72.222 0.00 0.00 0.00 4.30
1249 4495 1.349357 GCTCTTGGTCCCTCTGAAACT 59.651 52.381 0.00 0.00 0.00 2.66
1478 4724 0.458889 CGAGGTGGGCATGCAATTTG 60.459 55.000 21.36 0.04 0.00 2.32
1582 4828 2.427410 GTGCGCGAACTTTGCCAG 60.427 61.111 12.10 0.00 0.00 4.85
1588 4834 0.948678 GCGAACTTTGCCAGTAACCA 59.051 50.000 0.00 0.00 32.94 3.67
1924 5171 5.948842 ACTGGTTACTTATTTGTCAACCCT 58.051 37.500 0.00 0.00 38.28 4.34
1934 5181 1.104577 TGTCAACCCTTTTGCCGGAC 61.105 55.000 5.05 0.00 0.00 4.79
1971 5219 6.042781 GGGTATGTTCCATACATGAGGACTTA 59.957 42.308 14.40 0.39 46.81 2.24
2016 5264 3.058450 TGCTTCCGCAACAATCAAATTG 58.942 40.909 0.00 0.00 44.62 2.32
2040 5288 2.370519 TCCAGAAATCTCCCGTTTGTCA 59.629 45.455 0.00 0.00 0.00 3.58
2208 5456 5.694006 GGATTGTAGTGTGCAATAGAGCTAG 59.306 44.000 0.00 0.00 36.77 3.42
2214 5462 3.733224 GTGTGCAATAGAGCTAGTCATCG 59.267 47.826 0.00 0.00 34.99 3.84
2228 5476 2.045926 ATCGCCAGTTCACCAGGC 60.046 61.111 0.00 0.00 44.89 4.85
2229 5477 2.596851 ATCGCCAGTTCACCAGGCT 61.597 57.895 8.81 0.00 46.14 4.58
2230 5478 2.527951 ATCGCCAGTTCACCAGGCTC 62.528 60.000 8.81 0.00 46.14 4.70
2231 5479 2.431683 GCCAGTTCACCAGGCTCA 59.568 61.111 0.00 0.00 44.92 4.26
2232 5480 1.673665 GCCAGTTCACCAGGCTCAG 60.674 63.158 0.00 0.00 44.92 3.35
2233 5481 1.673665 CCAGTTCACCAGGCTCAGC 60.674 63.158 0.00 0.00 0.00 4.26
2244 5492 3.775654 GCTCAGCCTAGCCACCGT 61.776 66.667 0.00 0.00 36.45 4.83
2245 5493 2.185350 CTCAGCCTAGCCACCGTG 59.815 66.667 0.00 0.00 0.00 4.94
2246 5494 3.376935 CTCAGCCTAGCCACCGTGG 62.377 68.421 13.71 13.71 41.55 4.94
2247 5495 4.473520 CAGCCTAGCCACCGTGGG 62.474 72.222 19.41 3.50 38.19 4.61
2250 5498 3.470888 CCTAGCCACCGTGGGGAG 61.471 72.222 19.41 0.00 38.19 4.30
2251 5499 2.683933 CTAGCCACCGTGGGGAGT 60.684 66.667 19.41 0.00 38.19 3.85
2252 5500 1.380785 CTAGCCACCGTGGGGAGTA 60.381 63.158 19.41 0.00 38.19 2.59
2253 5501 0.974010 CTAGCCACCGTGGGGAGTAA 60.974 60.000 19.41 0.00 38.19 2.24
2254 5502 1.259840 TAGCCACCGTGGGGAGTAAC 61.260 60.000 19.41 0.41 38.19 2.50
2255 5503 2.590114 GCCACCGTGGGGAGTAACT 61.590 63.158 19.41 0.00 38.19 2.24
2256 5504 2.063774 CCACCGTGGGGAGTAACTT 58.936 57.895 9.99 0.00 36.97 2.66
2257 5505 1.269012 CCACCGTGGGGAGTAACTTA 58.731 55.000 9.99 0.00 36.97 2.24
2258 5506 1.206371 CCACCGTGGGGAGTAACTTAG 59.794 57.143 9.99 0.00 36.97 2.18
2259 5507 2.173519 CACCGTGGGGAGTAACTTAGA 58.826 52.381 0.00 0.00 36.97 2.10
2260 5508 2.094338 CACCGTGGGGAGTAACTTAGAC 60.094 54.545 0.00 0.00 36.97 2.59
2261 5509 2.225217 ACCGTGGGGAGTAACTTAGACT 60.225 50.000 0.00 0.00 36.97 3.24
2262 5510 3.010584 ACCGTGGGGAGTAACTTAGACTA 59.989 47.826 0.00 0.00 36.97 2.59
2263 5511 3.631227 CCGTGGGGAGTAACTTAGACTAG 59.369 52.174 0.00 0.00 34.06 2.57
2264 5512 4.268359 CGTGGGGAGTAACTTAGACTAGT 58.732 47.826 0.00 0.00 0.00 2.57
2265 5513 5.431765 CGTGGGGAGTAACTTAGACTAGTA 58.568 45.833 0.00 0.00 0.00 1.82
2266 5514 5.882557 CGTGGGGAGTAACTTAGACTAGTAA 59.117 44.000 0.00 0.00 0.00 2.24
2267 5515 6.183360 CGTGGGGAGTAACTTAGACTAGTAAC 60.183 46.154 0.00 0.00 0.00 2.50
2268 5516 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
2269 5517 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
2270 5518 7.341256 TGGGGAGTAACTTAGACTAGTAACATG 59.659 40.741 0.00 0.00 0.00 3.21
2271 5519 7.201835 GGGAGTAACTTAGACTAGTAACATGC 58.798 42.308 0.00 0.00 0.00 4.06
2272 5520 7.147949 GGGAGTAACTTAGACTAGTAACATGCA 60.148 40.741 0.00 0.00 0.00 3.96
2273 5521 8.414778 GGAGTAACTTAGACTAGTAACATGCAT 58.585 37.037 0.00 0.00 0.00 3.96
2308 5556 8.384718 AGTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
2309 5557 8.381636 GTCTATGTTACTACCTCTATAGTGGGA 58.618 40.741 21.82 14.49 36.09 4.37
2310 5558 8.604184 TCTATGTTACTACCTCTATAGTGGGAG 58.396 40.741 25.46 25.46 43.54 4.30
2319 5567 9.179909 CTACCTCTATAGTGGGAGTAACATATG 57.820 40.741 20.82 0.00 35.45 1.78
2320 5568 7.536625 ACCTCTATAGTGGGAGTAACATATGT 58.463 38.462 21.82 1.41 33.22 2.29
2321 5569 8.676020 ACCTCTATAGTGGGAGTAACATATGTA 58.324 37.037 21.82 0.00 33.22 2.29
2322 5570 9.702253 CCTCTATAGTGGGAGTAACATATGTAT 57.298 37.037 9.21 2.47 0.00 2.29
2324 5572 9.475620 TCTATAGTGGGAGTAACATATGTATGG 57.524 37.037 9.21 0.00 38.00 2.74
2325 5573 9.256228 CTATAGTGGGAGTAACATATGTATGGT 57.744 37.037 9.21 0.00 38.00 3.55
2326 5574 6.174720 AGTGGGAGTAACATATGTATGGTG 57.825 41.667 9.21 0.00 38.00 4.17
2327 5575 5.665812 AGTGGGAGTAACATATGTATGGTGT 59.334 40.000 9.21 0.00 38.00 4.16
2328 5576 5.989777 GTGGGAGTAACATATGTATGGTGTC 59.010 44.000 9.21 0.97 38.00 3.67
2329 5577 5.663556 TGGGAGTAACATATGTATGGTGTCA 59.336 40.000 9.21 0.64 38.00 3.58
2330 5578 6.328934 TGGGAGTAACATATGTATGGTGTCAT 59.671 38.462 9.21 0.00 38.00 3.06
2331 5579 6.650807 GGGAGTAACATATGTATGGTGTCATG 59.349 42.308 9.21 0.00 38.00 3.07
2332 5580 6.147821 GGAGTAACATATGTATGGTGTCATGC 59.852 42.308 9.21 0.00 38.00 4.06
2333 5581 6.591001 AGTAACATATGTATGGTGTCATGCA 58.409 36.000 9.21 0.00 46.88 3.96
2334 5582 7.053498 AGTAACATATGTATGGTGTCATGCAA 58.947 34.615 9.21 0.00 46.18 4.08
2335 5583 5.756195 ACATATGTATGGTGTCATGCAAC 57.244 39.130 6.56 0.00 46.18 4.17
2341 5589 2.049888 TGGTGTCATGCAACACTTCA 57.950 45.000 18.55 8.56 46.96 3.02
2342 5590 2.585330 TGGTGTCATGCAACACTTCAT 58.415 42.857 18.55 0.00 46.96 2.57
2343 5591 2.957680 TGGTGTCATGCAACACTTCATT 59.042 40.909 18.55 0.00 46.96 2.57
2344 5592 3.384146 TGGTGTCATGCAACACTTCATTT 59.616 39.130 18.55 0.00 46.96 2.32
2345 5593 4.582240 TGGTGTCATGCAACACTTCATTTA 59.418 37.500 18.55 0.00 46.96 1.40
2346 5594 5.243507 TGGTGTCATGCAACACTTCATTTAT 59.756 36.000 18.55 0.00 46.96 1.40
2347 5595 6.158598 GGTGTCATGCAACACTTCATTTATT 58.841 36.000 18.55 0.00 46.96 1.40
2348 5596 7.040132 TGGTGTCATGCAACACTTCATTTATTA 60.040 33.333 18.55 0.00 46.96 0.98
2349 5597 7.485913 GGTGTCATGCAACACTTCATTTATTAG 59.514 37.037 18.55 0.00 46.96 1.73
2350 5598 7.485913 GTGTCATGCAACACTTCATTTATTAGG 59.514 37.037 13.31 0.00 44.90 2.69
2351 5599 7.176515 TGTCATGCAACACTTCATTTATTAGGT 59.823 33.333 0.00 0.00 0.00 3.08
2352 5600 8.028938 GTCATGCAACACTTCATTTATTAGGTT 58.971 33.333 0.00 0.00 0.00 3.50
2353 5601 9.237187 TCATGCAACACTTCATTTATTAGGTTA 57.763 29.630 0.00 0.00 0.00 2.85
2372 5620 7.118496 AGGTTATAGACTCATCTTGTCTTGG 57.882 40.000 1.67 0.00 41.45 3.61
2373 5621 6.670027 AGGTTATAGACTCATCTTGTCTTGGT 59.330 38.462 1.67 0.00 41.45 3.67
2374 5622 7.839705 AGGTTATAGACTCATCTTGTCTTGGTA 59.160 37.037 1.67 0.00 41.45 3.25
2375 5623 8.643324 GGTTATAGACTCATCTTGTCTTGGTAT 58.357 37.037 1.67 0.00 41.45 2.73
2376 5624 9.469807 GTTATAGACTCATCTTGTCTTGGTATG 57.530 37.037 1.67 0.00 41.45 2.39
2377 5625 7.667575 ATAGACTCATCTTGTCTTGGTATGT 57.332 36.000 1.67 0.00 41.45 2.29
2378 5626 5.728471 AGACTCATCTTGTCTTGGTATGTG 58.272 41.667 0.00 0.00 41.45 3.21
2379 5627 5.247110 AGACTCATCTTGTCTTGGTATGTGT 59.753 40.000 0.00 0.00 41.45 3.72
2380 5628 5.240891 ACTCATCTTGTCTTGGTATGTGTG 58.759 41.667 0.00 0.00 0.00 3.82
2381 5629 5.012046 ACTCATCTTGTCTTGGTATGTGTGA 59.988 40.000 0.00 0.00 0.00 3.58
2382 5630 6.053632 TCATCTTGTCTTGGTATGTGTGAT 57.946 37.500 0.00 0.00 0.00 3.06
2383 5631 5.876460 TCATCTTGTCTTGGTATGTGTGATG 59.124 40.000 0.00 0.00 0.00 3.07
2384 5632 5.227569 TCTTGTCTTGGTATGTGTGATGT 57.772 39.130 0.00 0.00 0.00 3.06
2385 5633 5.620206 TCTTGTCTTGGTATGTGTGATGTT 58.380 37.500 0.00 0.00 0.00 2.71
2386 5634 6.764379 TCTTGTCTTGGTATGTGTGATGTTA 58.236 36.000 0.00 0.00 0.00 2.41
2387 5635 6.649141 TCTTGTCTTGGTATGTGTGATGTTAC 59.351 38.462 0.00 0.00 0.00 2.50
2388 5636 6.109156 TGTCTTGGTATGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
2389 5637 6.163476 TGTCTTGGTATGTGTGATGTTACTC 58.837 40.000 0.00 0.00 0.00 2.59
2390 5638 6.163476 GTCTTGGTATGTGTGATGTTACTCA 58.837 40.000 0.00 0.00 0.00 3.41
2391 5639 6.818644 GTCTTGGTATGTGTGATGTTACTCAT 59.181 38.462 0.00 0.00 38.11 2.90
2392 5640 7.979537 GTCTTGGTATGTGTGATGTTACTCATA 59.020 37.037 0.00 0.00 36.51 2.15
2393 5641 7.979537 TCTTGGTATGTGTGATGTTACTCATAC 59.020 37.037 16.60 16.60 46.70 2.39
2394 5642 7.418337 TGGTATGTGTGATGTTACTCATACT 57.582 36.000 20.80 2.42 46.66 2.12
2395 5643 8.528044 TGGTATGTGTGATGTTACTCATACTA 57.472 34.615 20.80 16.10 46.66 1.82
2396 5644 8.410912 TGGTATGTGTGATGTTACTCATACTAC 58.589 37.037 20.80 11.94 46.66 2.73
2397 5645 8.630917 GGTATGTGTGATGTTACTCATACTACT 58.369 37.037 20.80 1.93 46.66 2.57
2400 5648 8.803397 TGTGTGATGTTACTCATACTACTAGT 57.197 34.615 0.00 0.00 37.92 2.57
2401 5649 9.895138 TGTGTGATGTTACTCATACTACTAGTA 57.105 33.333 1.89 1.89 37.92 1.82
2428 5676 4.333913 CTATGTTAGCACATGCCTCTCT 57.666 45.455 0.00 0.00 43.92 3.10
2429 5677 3.641434 ATGTTAGCACATGCCTCTCTT 57.359 42.857 0.00 0.00 42.46 2.85
2430 5678 3.423539 TGTTAGCACATGCCTCTCTTT 57.576 42.857 0.00 0.00 43.38 2.52
2431 5679 3.338249 TGTTAGCACATGCCTCTCTTTC 58.662 45.455 0.00 0.00 43.38 2.62
2432 5680 3.008375 TGTTAGCACATGCCTCTCTTTCT 59.992 43.478 0.00 0.00 43.38 2.52
2433 5681 2.875094 AGCACATGCCTCTCTTTCTT 57.125 45.000 0.00 0.00 43.38 2.52
2434 5682 2.709213 AGCACATGCCTCTCTTTCTTC 58.291 47.619 0.00 0.00 43.38 2.87
2435 5683 2.039480 AGCACATGCCTCTCTTTCTTCA 59.961 45.455 0.00 0.00 43.38 3.02
2436 5684 3.015327 GCACATGCCTCTCTTTCTTCAT 58.985 45.455 0.00 0.00 34.31 2.57
2437 5685 3.442977 GCACATGCCTCTCTTTCTTCATT 59.557 43.478 0.00 0.00 34.31 2.57
2438 5686 4.637534 GCACATGCCTCTCTTTCTTCATTA 59.362 41.667 0.00 0.00 34.31 1.90
2439 5687 5.124457 GCACATGCCTCTCTTTCTTCATTAA 59.876 40.000 0.00 0.00 34.31 1.40
2440 5688 6.183360 GCACATGCCTCTCTTTCTTCATTAAT 60.183 38.462 0.00 0.00 34.31 1.40
2441 5689 7.630082 GCACATGCCTCTCTTTCTTCATTAATT 60.630 37.037 0.00 0.00 34.31 1.40
2442 5690 7.701078 CACATGCCTCTCTTTCTTCATTAATTG 59.299 37.037 0.00 0.00 0.00 2.32
2443 5691 6.199937 TGCCTCTCTTTCTTCATTAATTGC 57.800 37.500 0.00 0.00 0.00 3.56
2444 5692 5.948162 TGCCTCTCTTTCTTCATTAATTGCT 59.052 36.000 0.00 0.00 0.00 3.91
2445 5693 6.435277 TGCCTCTCTTTCTTCATTAATTGCTT 59.565 34.615 0.00 0.00 0.00 3.91
2446 5694 6.750963 GCCTCTCTTTCTTCATTAATTGCTTG 59.249 38.462 0.00 0.00 0.00 4.01
2447 5695 6.750963 CCTCTCTTTCTTCATTAATTGCTTGC 59.249 38.462 0.00 0.00 0.00 4.01
2448 5696 6.624423 TCTCTTTCTTCATTAATTGCTTGCC 58.376 36.000 0.00 0.00 0.00 4.52
2449 5697 6.209192 TCTCTTTCTTCATTAATTGCTTGCCA 59.791 34.615 0.00 0.00 0.00 4.92
2450 5698 6.158598 TCTTTCTTCATTAATTGCTTGCCAC 58.841 36.000 0.00 0.00 0.00 5.01
2451 5699 5.465532 TTCTTCATTAATTGCTTGCCACA 57.534 34.783 0.00 0.00 0.00 4.17
2452 5700 5.664294 TCTTCATTAATTGCTTGCCACAT 57.336 34.783 0.00 0.00 0.00 3.21
2453 5701 5.653507 TCTTCATTAATTGCTTGCCACATC 58.346 37.500 0.00 0.00 0.00 3.06
2454 5702 5.185442 TCTTCATTAATTGCTTGCCACATCA 59.815 36.000 0.00 0.00 0.00 3.07
2455 5703 5.601583 TCATTAATTGCTTGCCACATCAT 57.398 34.783 0.00 0.00 0.00 2.45
2456 5704 5.593968 TCATTAATTGCTTGCCACATCATC 58.406 37.500 0.00 0.00 0.00 2.92
2457 5705 2.973694 AATTGCTTGCCACATCATCC 57.026 45.000 0.00 0.00 0.00 3.51
2458 5706 1.855295 ATTGCTTGCCACATCATCCA 58.145 45.000 0.00 0.00 0.00 3.41
2459 5707 1.855295 TTGCTTGCCACATCATCCAT 58.145 45.000 0.00 0.00 0.00 3.41
2460 5708 1.855295 TGCTTGCCACATCATCCATT 58.145 45.000 0.00 0.00 0.00 3.16
2461 5709 2.181125 TGCTTGCCACATCATCCATTT 58.819 42.857 0.00 0.00 0.00 2.32
2462 5710 2.568062 TGCTTGCCACATCATCCATTTT 59.432 40.909 0.00 0.00 0.00 1.82
2463 5711 3.768215 TGCTTGCCACATCATCCATTTTA 59.232 39.130 0.00 0.00 0.00 1.52
2464 5712 4.406326 TGCTTGCCACATCATCCATTTTAT 59.594 37.500 0.00 0.00 0.00 1.40
2465 5713 4.986659 GCTTGCCACATCATCCATTTTATC 59.013 41.667 0.00 0.00 0.00 1.75
2466 5714 5.221382 GCTTGCCACATCATCCATTTTATCT 60.221 40.000 0.00 0.00 0.00 1.98
2467 5715 6.016024 GCTTGCCACATCATCCATTTTATCTA 60.016 38.462 0.00 0.00 0.00 1.98
2468 5716 7.514784 TTGCCACATCATCCATTTTATCTAG 57.485 36.000 0.00 0.00 0.00 2.43
2469 5717 6.840527 TGCCACATCATCCATTTTATCTAGA 58.159 36.000 0.00 0.00 0.00 2.43
2470 5718 7.464273 TGCCACATCATCCATTTTATCTAGAT 58.536 34.615 10.73 10.73 0.00 1.98
2471 5719 8.605065 TGCCACATCATCCATTTTATCTAGATA 58.395 33.333 8.44 8.44 0.00 1.98
2472 5720 9.624373 GCCACATCATCCATTTTATCTAGATAT 57.376 33.333 13.22 0.00 0.00 1.63
2489 5737 9.775539 ATCTAGATATATGTGATGTTACCACCT 57.224 33.333 2.53 0.00 33.80 4.00
2493 5741 9.326489 AGATATATGTGATGTTACCACCTATGT 57.674 33.333 0.00 0.00 33.80 2.29
2494 5742 9.944376 GATATATGTGATGTTACCACCTATGTT 57.056 33.333 0.00 0.00 33.80 2.71
2497 5745 6.614694 TGTGATGTTACCACCTATGTTACT 57.385 37.500 0.00 0.00 33.80 2.24
2498 5746 6.636705 TGTGATGTTACCACCTATGTTACTC 58.363 40.000 0.00 0.00 33.80 2.59
2499 5747 6.047231 GTGATGTTACCACCTATGTTACTCC 58.953 44.000 0.00 0.00 0.00 3.85
2500 5748 5.129815 TGATGTTACCACCTATGTTACTCCC 59.870 44.000 0.00 0.00 0.00 4.30
2501 5749 4.427637 TGTTACCACCTATGTTACTCCCA 58.572 43.478 0.00 0.00 0.00 4.37
2502 5750 4.223477 TGTTACCACCTATGTTACTCCCAC 59.777 45.833 0.00 0.00 0.00 4.61
2503 5751 3.200958 ACCACCTATGTTACTCCCACT 57.799 47.619 0.00 0.00 0.00 4.00
2504 5752 2.838202 ACCACCTATGTTACTCCCACTG 59.162 50.000 0.00 0.00 0.00 3.66
2505 5753 2.838202 CCACCTATGTTACTCCCACTGT 59.162 50.000 0.00 0.00 0.00 3.55
2506 5754 3.369471 CCACCTATGTTACTCCCACTGTG 60.369 52.174 0.00 0.00 0.00 3.66
2507 5755 2.838202 ACCTATGTTACTCCCACTGTGG 59.162 50.000 20.01 20.01 37.25 4.17
2726 5975 3.009115 ACTATGTGGCGCCCCTGT 61.009 61.111 26.77 12.77 0.00 4.00
2800 6052 5.560724 TGTTTGGAAGATCCTTTCGAGATT 58.439 37.500 0.00 0.00 37.46 2.40
2995 6247 0.329261 TCTACTCCCTCCGTCCGAAA 59.671 55.000 0.00 0.00 0.00 3.46
3071 6323 8.621126 ATGCTAGATACATCTATTTGAGGGAT 57.379 34.615 0.00 0.00 38.60 3.85
3115 6367 7.400627 GGGAGTATAAATTAGGAGCTAGGACAT 59.599 40.741 0.00 0.00 0.00 3.06
3116 6368 9.476928 GGAGTATAAATTAGGAGCTAGGACATA 57.523 37.037 0.00 0.00 0.00 2.29
3118 6370 8.958506 AGTATAAATTAGGAGCTAGGACATACG 58.041 37.037 0.00 0.00 0.00 3.06
3252 6504 1.254954 GTACAGACTGTCCGGACCTT 58.745 55.000 31.19 18.22 0.00 3.50
3384 6642 0.328258 CCGTTGGAGGGGAAGACAAT 59.672 55.000 0.00 0.00 0.00 2.71
3433 6691 3.471680 GTGCCAAATTTTAGGTTTGCCA 58.528 40.909 0.00 0.00 35.71 4.92
3988 7246 1.295792 GCGCCATTCGATTTCAGGTA 58.704 50.000 0.00 0.00 41.67 3.08
4117 7375 6.753279 TGCTTTAATTAGCACATCAAGAATGC 59.247 34.615 0.00 2.44 45.72 3.56
4412 7670 3.173965 ACAGTCCTATAGCACCACACTT 58.826 45.455 0.00 0.00 0.00 3.16
4609 7934 3.908103 ACTTGACATACAGTAGGGTTGGT 59.092 43.478 0.00 0.00 0.00 3.67
4652 7984 2.045926 GGGCAGCATCTCCAACGT 60.046 61.111 0.00 0.00 0.00 3.99
4723 8061 2.771089 GGACTGAGTTGTCTGCATTCA 58.229 47.619 0.00 0.00 37.16 2.57
4731 8069 1.985473 TGTCTGCATTCAGTTTGCCT 58.015 45.000 0.00 0.00 41.10 4.75
4833 8182 0.750850 ATGTAGGATTCCGACACCCG 59.249 55.000 19.29 0.00 41.53 5.28
4846 8195 1.376812 CACCCGGGCCTACTCAAAC 60.377 63.158 24.08 0.00 0.00 2.93
4886 8544 0.842030 TCTTCCACTCCACCCATGCT 60.842 55.000 0.00 0.00 0.00 3.79
4903 8562 1.269958 GCTCCCCCTTTGCTTTCATT 58.730 50.000 0.00 0.00 0.00 2.57
4916 8575 1.821136 CTTTCATTTGCACCCTCCTCC 59.179 52.381 0.00 0.00 0.00 4.30
4943 8603 0.892358 TCGCCGTTGTACCTCTCAGT 60.892 55.000 0.00 0.00 0.00 3.41
4959 8619 2.049185 AGTCGTCGCTCAGGCATCT 61.049 57.895 0.00 0.00 38.60 2.90
5122 8784 5.445407 CGATCAAATGCCATTGAGCTTTTTG 60.445 40.000 12.93 13.39 42.13 2.44
5123 8785 4.706035 TCAAATGCCATTGAGCTTTTTGT 58.294 34.783 16.05 0.00 37.85 2.83
5125 8787 5.007823 TCAAATGCCATTGAGCTTTTTGTTG 59.992 36.000 16.05 0.00 37.85 3.33
5126 8788 3.540314 TGCCATTGAGCTTTTTGTTGT 57.460 38.095 0.00 0.00 0.00 3.32
5127 8789 3.871485 TGCCATTGAGCTTTTTGTTGTT 58.129 36.364 0.00 0.00 0.00 2.83
5129 8791 3.870419 GCCATTGAGCTTTTTGTTGTTGA 59.130 39.130 0.00 0.00 0.00 3.18
5130 8792 4.332268 GCCATTGAGCTTTTTGTTGTTGAA 59.668 37.500 0.00 0.00 0.00 2.69
5134 8797 6.704512 TTGAGCTTTTTGTTGTTGAACTTC 57.295 33.333 0.00 0.00 32.79 3.01
5145 8808 9.751542 TTTGTTGTTGAACTTCTTGTTTTCTAA 57.248 25.926 0.00 0.00 39.30 2.10
5173 8836 0.032912 TGATGGCAGGGTACTCGGTA 60.033 55.000 0.00 0.00 0.00 4.02
5393 9097 1.893137 ACGAGTGGAGACAATGTAGCA 59.107 47.619 0.00 0.00 46.06 3.49
5398 9102 4.910195 AGTGGAGACAATGTAGCAATCAA 58.090 39.130 0.00 0.00 46.06 2.57
5438 9142 7.724305 AGATCGTAAGTTTTGCTTCTTGTTA 57.276 32.000 0.00 0.00 38.57 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.150897 TCTTAGGGCGATTTTAGCACAT 57.849 40.909 0.00 0.00 41.23 3.21
49 50 4.895961 AGACACTAGCAAGGTAAAAGGTC 58.104 43.478 0.00 0.00 0.00 3.85
131 132 8.321353 GTCAATCCCCTATGTCATCAACATATA 58.679 37.037 0.00 0.00 46.95 0.86
239 240 4.072131 TGGTGGATCTTTTACTTGTGCTC 58.928 43.478 0.00 0.00 0.00 4.26
402 405 4.394920 GCAAACCTCCGAAGTTGATCATAA 59.605 41.667 0.00 0.00 0.00 1.90
403 406 3.938963 GCAAACCTCCGAAGTTGATCATA 59.061 43.478 0.00 0.00 0.00 2.15
416 419 7.375053 TCAACAATATAACAAAGCAAACCTCC 58.625 34.615 0.00 0.00 0.00 4.30
455 458 5.938322 TGGAACGCTTCTATGTTTCATTTC 58.062 37.500 0.00 0.00 28.75 2.17
459 462 4.130857 TGTTGGAACGCTTCTATGTTTCA 58.869 39.130 0.00 0.00 31.85 2.69
493 496 8.354711 TGTTGGCTTGGTTTGTGATATAAATA 57.645 30.769 0.00 0.00 0.00 1.40
504 510 1.478622 CGCGTTGTTGGCTTGGTTTG 61.479 55.000 0.00 0.00 0.00 2.93
523 529 2.423577 AGAAAATGCCCGTGTGAGTAC 58.576 47.619 0.00 0.00 0.00 2.73
541 547 1.061546 ACCCCTCGCAAAAGGTTAGA 58.938 50.000 0.00 0.00 34.34 2.10
625 661 1.545582 CATCCCTGTTGGCGATTGTTT 59.454 47.619 0.00 0.00 0.00 2.83
629 665 4.664062 CCATCCCTGTTGGCGATT 57.336 55.556 0.00 0.00 0.00 3.34
642 678 0.452784 GAACGTTCGCAGTTGCCATC 60.453 55.000 13.36 0.00 37.91 3.51
643 679 1.574428 GAACGTTCGCAGTTGCCAT 59.426 52.632 13.36 0.00 37.91 4.40
644 680 2.876879 CGAACGTTCGCAGTTGCCA 61.877 57.895 34.54 0.00 44.26 4.92
645 681 2.127758 CGAACGTTCGCAGTTGCC 60.128 61.111 34.54 2.69 44.26 4.52
654 690 0.531311 AACTGACACCCCGAACGTTC 60.531 55.000 18.47 18.47 0.00 3.95
655 691 0.107557 AAACTGACACCCCGAACGTT 60.108 50.000 0.00 0.00 0.00 3.99
656 692 0.107557 AAAACTGACACCCCGAACGT 60.108 50.000 0.00 0.00 0.00 3.99
657 693 1.018910 AAAAACTGACACCCCGAACG 58.981 50.000 0.00 0.00 0.00 3.95
658 694 1.746787 ACAAAAACTGACACCCCGAAC 59.253 47.619 0.00 0.00 0.00 3.95
659 695 1.746220 CACAAAAACTGACACCCCGAA 59.254 47.619 0.00 0.00 0.00 4.30
660 696 1.384525 CACAAAAACTGACACCCCGA 58.615 50.000 0.00 0.00 0.00 5.14
661 697 0.383949 CCACAAAAACTGACACCCCG 59.616 55.000 0.00 0.00 0.00 5.73
662 698 1.136110 CACCACAAAAACTGACACCCC 59.864 52.381 0.00 0.00 0.00 4.95
663 699 1.136110 CCACCACAAAAACTGACACCC 59.864 52.381 0.00 0.00 0.00 4.61
664 700 1.136110 CCCACCACAAAAACTGACACC 59.864 52.381 0.00 0.00 0.00 4.16
665 701 1.136110 CCCCACCACAAAAACTGACAC 59.864 52.381 0.00 0.00 0.00 3.67
666 702 1.479709 CCCCACCACAAAAACTGACA 58.520 50.000 0.00 0.00 0.00 3.58
667 703 0.750249 CCCCCACCACAAAAACTGAC 59.250 55.000 0.00 0.00 0.00 3.51
668 704 0.336737 ACCCCCACCACAAAAACTGA 59.663 50.000 0.00 0.00 0.00 3.41
669 705 0.463620 CACCCCCACCACAAAAACTG 59.536 55.000 0.00 0.00 0.00 3.16
670 706 1.334384 GCACCCCCACCACAAAAACT 61.334 55.000 0.00 0.00 0.00 2.66
671 707 1.145156 GCACCCCCACCACAAAAAC 59.855 57.895 0.00 0.00 0.00 2.43
672 708 1.306141 TGCACCCCCACCACAAAAA 60.306 52.632 0.00 0.00 0.00 1.94
673 709 2.060980 GTGCACCCCCACCACAAAA 61.061 57.895 5.22 0.00 0.00 2.44
674 710 2.443016 GTGCACCCCCACCACAAA 60.443 61.111 5.22 0.00 0.00 2.83
675 711 2.522198 AAAGTGCACCCCCACCACAA 62.522 55.000 14.63 0.00 36.38 3.33
676 712 1.646367 TAAAGTGCACCCCCACCACA 61.646 55.000 14.63 0.00 36.38 4.17
677 713 1.151908 TAAAGTGCACCCCCACCAC 59.848 57.895 14.63 0.00 36.38 4.16
678 714 1.151908 GTAAAGTGCACCCCCACCA 59.848 57.895 14.63 0.00 36.38 4.17
679 715 0.468400 TTGTAAAGTGCACCCCCACC 60.468 55.000 14.63 0.00 36.38 4.61
680 716 1.404843 TTTGTAAAGTGCACCCCCAC 58.595 50.000 14.63 7.36 35.98 4.61
681 717 1.757699 GTTTTGTAAAGTGCACCCCCA 59.242 47.619 14.63 2.40 0.00 4.96
682 718 2.036387 AGTTTTGTAAAGTGCACCCCC 58.964 47.619 14.63 0.00 0.00 5.40
683 719 3.005050 GGTAGTTTTGTAAAGTGCACCCC 59.995 47.826 14.63 0.00 0.00 4.95
684 720 3.633065 TGGTAGTTTTGTAAAGTGCACCC 59.367 43.478 14.63 2.96 0.00 4.61
685 721 4.904253 TGGTAGTTTTGTAAAGTGCACC 57.096 40.909 14.63 0.00 0.00 5.01
686 722 5.827666 ACATGGTAGTTTTGTAAAGTGCAC 58.172 37.500 9.40 9.40 0.00 4.57
687 723 5.590663 TGACATGGTAGTTTTGTAAAGTGCA 59.409 36.000 0.00 0.00 0.00 4.57
839 4077 0.611896 CGGTTTTGGAGCCCCAGAAT 60.612 55.000 0.00 0.00 44.60 2.40
957 4195 1.581602 CCAACGTGTTGAAAGTTTGCG 59.418 47.619 14.06 0.00 42.93 4.85
1006 4244 0.459411 GGAGCTCTGAGTTTCGGCTC 60.459 60.000 14.64 6.19 45.77 4.70
1249 4495 3.663815 GACGAGGGAGAGAGGGGCA 62.664 68.421 0.00 0.00 0.00 5.36
1324 4570 1.276421 AGTATCGTTGTCTTGCCTGCT 59.724 47.619 0.00 0.00 0.00 4.24
1330 4576 7.858382 CCTAGTATCTTCAGTATCGTTGTCTTG 59.142 40.741 0.00 0.00 0.00 3.02
1617 4864 4.096003 ACTGCGTCCATTCGGGGG 62.096 66.667 0.00 0.00 37.22 5.40
1657 4904 4.816126 TCTGTATATTCACCTGGTAGCCT 58.184 43.478 0.00 0.00 0.00 4.58
1819 5066 9.520204 GGACATGGTATCATTAAATTTGACAAG 57.480 33.333 0.00 0.00 0.00 3.16
1920 5167 0.696501 ACATAGTCCGGCAAAAGGGT 59.303 50.000 0.00 0.00 0.00 4.34
1924 5171 2.570415 TTCCACATAGTCCGGCAAAA 57.430 45.000 0.00 0.00 0.00 2.44
1934 5181 5.445069 TGGAACATACCCATTTCCACATAG 58.555 41.667 0.00 0.00 43.13 2.23
1971 5219 6.820656 CACTAGTTCAGGCAACAGATAATTCT 59.179 38.462 0.00 0.00 37.48 2.40
2016 5264 4.514401 ACAAACGGGAGATTTCTGGATAC 58.486 43.478 0.00 0.00 0.00 2.24
2040 5288 5.279708 GGCTAGAGTATGCAAGTATGACCAT 60.280 44.000 0.00 0.00 0.00 3.55
2208 5456 1.021390 CCTGGTGAACTGGCGATGAC 61.021 60.000 0.00 0.00 0.00 3.06
2228 5476 2.185350 CACGGTGGCTAGGCTGAG 59.815 66.667 18.18 10.42 0.00 3.35
2229 5477 3.390521 CCACGGTGGCTAGGCTGA 61.391 66.667 15.29 0.00 0.00 4.26
2230 5478 4.473520 CCCACGGTGGCTAGGCTG 62.474 72.222 21.88 7.06 35.79 4.85
2233 5481 2.866523 TACTCCCCACGGTGGCTAGG 62.867 65.000 21.88 16.99 35.79 3.02
2234 5482 0.974010 TTACTCCCCACGGTGGCTAG 60.974 60.000 21.88 20.50 35.79 3.42
2235 5483 1.078891 TTACTCCCCACGGTGGCTA 59.921 57.895 21.88 10.28 35.79 3.93
2236 5484 2.203877 TTACTCCCCACGGTGGCT 60.204 61.111 21.88 5.95 35.79 4.75
2237 5485 2.046604 GTTACTCCCCACGGTGGC 60.047 66.667 21.88 2.23 35.79 5.01
2238 5486 1.206371 CTAAGTTACTCCCCACGGTGG 59.794 57.143 20.41 20.41 37.25 4.61
2239 5487 2.094338 GTCTAAGTTACTCCCCACGGTG 60.094 54.545 0.00 0.00 0.00 4.94
2240 5488 2.174360 GTCTAAGTTACTCCCCACGGT 58.826 52.381 0.00 0.00 0.00 4.83
2241 5489 2.454538 AGTCTAAGTTACTCCCCACGG 58.545 52.381 0.00 0.00 0.00 4.94
2242 5490 4.268359 ACTAGTCTAAGTTACTCCCCACG 58.732 47.826 0.00 0.00 0.00 4.94
2243 5491 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
2244 5492 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
2245 5493 7.683945 GCATGTTACTAGTCTAAGTTACTCCCC 60.684 44.444 0.00 0.00 31.82 4.81
2246 5494 7.147949 TGCATGTTACTAGTCTAAGTTACTCCC 60.148 40.741 0.00 0.00 31.82 4.30
2247 5495 7.769220 TGCATGTTACTAGTCTAAGTTACTCC 58.231 38.462 0.00 0.00 31.82 3.85
2282 5530 8.384718 CCCACTATAGAGGTAGTAACATAGACT 58.615 40.741 14.29 0.00 33.29 3.24
2283 5531 8.381636 TCCCACTATAGAGGTAGTAACATAGAC 58.618 40.741 14.29 0.00 33.29 2.59
2284 5532 8.515927 TCCCACTATAGAGGTAGTAACATAGA 57.484 38.462 14.29 0.00 33.29 1.98
2285 5533 8.384718 ACTCCCACTATAGAGGTAGTAACATAG 58.615 40.741 11.88 3.27 33.29 2.23
2286 5534 8.285350 ACTCCCACTATAGAGGTAGTAACATA 57.715 38.462 11.88 0.00 33.29 2.29
2287 5535 7.164233 ACTCCCACTATAGAGGTAGTAACAT 57.836 40.000 11.88 0.00 33.29 2.71
2288 5536 6.587560 ACTCCCACTATAGAGGTAGTAACA 57.412 41.667 11.88 0.00 33.29 2.41
2289 5537 7.995488 TGTTACTCCCACTATAGAGGTAGTAAC 59.005 40.741 33.72 33.72 40.30 2.50
2290 5538 8.106017 TGTTACTCCCACTATAGAGGTAGTAA 57.894 38.462 22.19 22.19 33.29 2.24
2291 5539 7.696618 TGTTACTCCCACTATAGAGGTAGTA 57.303 40.000 14.86 14.86 33.29 1.82
2292 5540 6.587560 TGTTACTCCCACTATAGAGGTAGT 57.412 41.667 16.59 16.59 35.34 2.73
2293 5541 9.179909 CATATGTTACTCCCACTATAGAGGTAG 57.820 40.741 14.29 10.74 34.27 3.18
2294 5542 8.676020 ACATATGTTACTCCCACTATAGAGGTA 58.324 37.037 14.29 0.00 34.27 3.08
2295 5543 7.536625 ACATATGTTACTCCCACTATAGAGGT 58.463 38.462 14.29 0.02 34.27 3.85
2296 5544 9.702253 ATACATATGTTACTCCCACTATAGAGG 57.298 37.037 14.77 8.10 34.27 3.69
2298 5546 9.475620 CCATACATATGTTACTCCCACTATAGA 57.524 37.037 14.77 0.00 31.82 1.98
2299 5547 9.256228 ACCATACATATGTTACTCCCACTATAG 57.744 37.037 14.77 0.00 31.82 1.31
2300 5548 9.031537 CACCATACATATGTTACTCCCACTATA 57.968 37.037 14.77 0.00 31.82 1.31
2301 5549 7.512746 ACACCATACATATGTTACTCCCACTAT 59.487 37.037 14.77 0.00 31.82 2.12
2302 5550 6.842280 ACACCATACATATGTTACTCCCACTA 59.158 38.462 14.77 0.00 31.82 2.74
2303 5551 5.665812 ACACCATACATATGTTACTCCCACT 59.334 40.000 14.77 0.00 31.82 4.00
2304 5552 5.925509 ACACCATACATATGTTACTCCCAC 58.074 41.667 14.77 0.00 31.82 4.61
2305 5553 5.663556 TGACACCATACATATGTTACTCCCA 59.336 40.000 14.77 2.41 31.82 4.37
2306 5554 6.169557 TGACACCATACATATGTTACTCCC 57.830 41.667 14.77 0.00 31.82 4.30
2307 5555 6.147821 GCATGACACCATACATATGTTACTCC 59.852 42.308 14.77 0.00 31.82 3.85
2308 5556 6.705825 TGCATGACACCATACATATGTTACTC 59.294 38.462 14.77 1.81 31.82 2.59
2309 5557 6.591001 TGCATGACACCATACATATGTTACT 58.409 36.000 14.77 0.00 31.82 2.24
2310 5558 6.859420 TGCATGACACCATACATATGTTAC 57.141 37.500 14.77 0.00 31.82 2.50
2311 5559 6.825721 TGTTGCATGACACCATACATATGTTA 59.174 34.615 14.77 0.60 31.82 2.41
2312 5560 5.651576 TGTTGCATGACACCATACATATGTT 59.348 36.000 14.77 0.00 31.82 2.71
2313 5561 5.066375 GTGTTGCATGACACCATACATATGT 59.934 40.000 13.93 13.93 43.16 2.29
2314 5562 5.513376 GTGTTGCATGACACCATACATATG 58.487 41.667 10.05 0.00 43.16 1.78
2315 5563 5.756195 GTGTTGCATGACACCATACATAT 57.244 39.130 10.05 0.00 43.16 1.78
2325 5573 7.176515 ACCTAATAAATGAAGTGTTGCATGACA 59.823 33.333 0.00 0.00 0.00 3.58
2326 5574 7.538575 ACCTAATAAATGAAGTGTTGCATGAC 58.461 34.615 0.00 0.00 0.00 3.06
2327 5575 7.701539 ACCTAATAAATGAAGTGTTGCATGA 57.298 32.000 0.00 0.00 0.00 3.07
2346 5594 8.696374 CCAAGACAAGATGAGTCTATAACCTAA 58.304 37.037 0.00 0.00 45.11 2.69
2347 5595 7.839705 ACCAAGACAAGATGAGTCTATAACCTA 59.160 37.037 0.00 0.00 45.11 3.08
2348 5596 6.670027 ACCAAGACAAGATGAGTCTATAACCT 59.330 38.462 0.00 0.00 45.11 3.50
2349 5597 6.879400 ACCAAGACAAGATGAGTCTATAACC 58.121 40.000 0.00 0.00 45.11 2.85
2350 5598 9.469807 CATACCAAGACAAGATGAGTCTATAAC 57.530 37.037 0.00 0.00 45.11 1.89
2351 5599 9.201989 ACATACCAAGACAAGATGAGTCTATAA 57.798 33.333 0.00 0.00 45.11 0.98
2352 5600 8.633561 CACATACCAAGACAAGATGAGTCTATA 58.366 37.037 0.00 0.00 45.11 1.31
2353 5601 7.124901 ACACATACCAAGACAAGATGAGTCTAT 59.875 37.037 0.00 0.00 45.11 1.98
2354 5602 6.437477 ACACATACCAAGACAAGATGAGTCTA 59.563 38.462 0.00 0.00 45.11 2.59
2356 5604 5.349817 CACACATACCAAGACAAGATGAGTC 59.650 44.000 0.00 0.00 36.26 3.36
2357 5605 5.012046 TCACACATACCAAGACAAGATGAGT 59.988 40.000 0.00 0.00 0.00 3.41
2358 5606 5.482006 TCACACATACCAAGACAAGATGAG 58.518 41.667 0.00 0.00 0.00 2.90
2359 5607 5.482163 TCACACATACCAAGACAAGATGA 57.518 39.130 0.00 0.00 0.00 2.92
2360 5608 5.645067 ACATCACACATACCAAGACAAGATG 59.355 40.000 0.00 0.00 36.24 2.90
2361 5609 5.809001 ACATCACACATACCAAGACAAGAT 58.191 37.500 0.00 0.00 0.00 2.40
2362 5610 5.227569 ACATCACACATACCAAGACAAGA 57.772 39.130 0.00 0.00 0.00 3.02
2363 5611 5.947228 AACATCACACATACCAAGACAAG 57.053 39.130 0.00 0.00 0.00 3.16
2364 5612 6.530120 AGTAACATCACACATACCAAGACAA 58.470 36.000 0.00 0.00 0.00 3.18
2365 5613 6.109156 AGTAACATCACACATACCAAGACA 57.891 37.500 0.00 0.00 0.00 3.41
2366 5614 6.163476 TGAGTAACATCACACATACCAAGAC 58.837 40.000 0.00 0.00 0.00 3.01
2367 5615 6.353404 TGAGTAACATCACACATACCAAGA 57.647 37.500 0.00 0.00 0.00 3.02
2368 5616 7.981789 AGTATGAGTAACATCACACATACCAAG 59.018 37.037 15.52 0.00 45.96 3.61
2369 5617 7.847096 AGTATGAGTAACATCACACATACCAA 58.153 34.615 15.52 0.00 45.96 3.67
2370 5618 7.418337 AGTATGAGTAACATCACACATACCA 57.582 36.000 15.52 0.00 45.96 3.25
2371 5619 8.630917 AGTAGTATGAGTAACATCACACATACC 58.369 37.037 15.52 6.27 45.96 2.73
2374 5622 9.409918 ACTAGTAGTATGAGTAACATCACACAT 57.590 33.333 0.00 0.00 40.07 3.21
2375 5623 8.803397 ACTAGTAGTATGAGTAACATCACACA 57.197 34.615 0.00 0.00 40.07 3.72
2406 5654 2.805099 GAGAGGCATGTGCTAACATAGC 59.195 50.000 4.84 2.45 45.50 2.97
2407 5655 4.333913 AGAGAGGCATGTGCTAACATAG 57.666 45.455 4.84 0.00 45.50 2.23
2408 5656 4.760530 AAGAGAGGCATGTGCTAACATA 57.239 40.909 4.84 0.00 45.50 2.29
2410 5658 3.008375 AGAAAGAGAGGCATGTGCTAACA 59.992 43.478 4.84 0.00 41.58 2.41
2411 5659 3.604582 AGAAAGAGAGGCATGTGCTAAC 58.395 45.455 4.84 0.00 41.70 2.34
2412 5660 3.988976 AGAAAGAGAGGCATGTGCTAA 57.011 42.857 4.84 0.00 41.70 3.09
2413 5661 3.261643 TGAAGAAAGAGAGGCATGTGCTA 59.738 43.478 4.84 0.00 41.70 3.49
2414 5662 2.039480 TGAAGAAAGAGAGGCATGTGCT 59.961 45.455 4.84 0.00 41.70 4.40
2415 5663 2.430465 TGAAGAAAGAGAGGCATGTGC 58.570 47.619 0.00 0.00 41.14 4.57
2416 5664 6.748333 TTAATGAAGAAAGAGAGGCATGTG 57.252 37.500 0.00 0.00 0.00 3.21
2417 5665 7.630082 GCAATTAATGAAGAAAGAGAGGCATGT 60.630 37.037 0.00 0.00 0.00 3.21
2418 5666 6.696148 GCAATTAATGAAGAAAGAGAGGCATG 59.304 38.462 0.00 0.00 0.00 4.06
2419 5667 6.606395 AGCAATTAATGAAGAAAGAGAGGCAT 59.394 34.615 0.00 0.00 0.00 4.40
2420 5668 5.948162 AGCAATTAATGAAGAAAGAGAGGCA 59.052 36.000 0.00 0.00 0.00 4.75
2421 5669 6.448207 AGCAATTAATGAAGAAAGAGAGGC 57.552 37.500 0.00 0.00 0.00 4.70
2422 5670 6.750963 GCAAGCAATTAATGAAGAAAGAGAGG 59.249 38.462 0.00 0.00 0.00 3.69
2423 5671 6.750963 GGCAAGCAATTAATGAAGAAAGAGAG 59.249 38.462 0.00 0.00 0.00 3.20
2424 5672 6.209192 TGGCAAGCAATTAATGAAGAAAGAGA 59.791 34.615 0.00 0.00 0.00 3.10
2425 5673 6.309737 GTGGCAAGCAATTAATGAAGAAAGAG 59.690 38.462 0.00 0.00 0.00 2.85
2426 5674 6.158598 GTGGCAAGCAATTAATGAAGAAAGA 58.841 36.000 0.00 0.00 0.00 2.52
2427 5675 5.927689 TGTGGCAAGCAATTAATGAAGAAAG 59.072 36.000 0.00 0.00 0.00 2.62
2428 5676 5.851720 TGTGGCAAGCAATTAATGAAGAAA 58.148 33.333 0.00 0.00 0.00 2.52
2429 5677 5.465532 TGTGGCAAGCAATTAATGAAGAA 57.534 34.783 0.00 0.00 0.00 2.52
2430 5678 5.185442 TGATGTGGCAAGCAATTAATGAAGA 59.815 36.000 0.00 0.00 0.00 2.87
2431 5679 5.412640 TGATGTGGCAAGCAATTAATGAAG 58.587 37.500 0.00 0.00 0.00 3.02
2432 5680 5.402997 TGATGTGGCAAGCAATTAATGAA 57.597 34.783 0.00 0.00 0.00 2.57
2433 5681 5.452216 GGATGATGTGGCAAGCAATTAATGA 60.452 40.000 0.00 0.00 0.00 2.57
2434 5682 4.748102 GGATGATGTGGCAAGCAATTAATG 59.252 41.667 0.00 0.00 0.00 1.90
2435 5683 4.406326 TGGATGATGTGGCAAGCAATTAAT 59.594 37.500 0.00 0.00 0.00 1.40
2436 5684 3.768215 TGGATGATGTGGCAAGCAATTAA 59.232 39.130 0.00 0.00 0.00 1.40
2437 5685 3.363627 TGGATGATGTGGCAAGCAATTA 58.636 40.909 0.00 0.00 0.00 1.40
2438 5686 2.181125 TGGATGATGTGGCAAGCAATT 58.819 42.857 0.00 0.00 0.00 2.32
2439 5687 1.855295 TGGATGATGTGGCAAGCAAT 58.145 45.000 0.00 0.00 0.00 3.56
2440 5688 1.855295 ATGGATGATGTGGCAAGCAA 58.145 45.000 0.00 0.00 0.00 3.91
2441 5689 1.855295 AATGGATGATGTGGCAAGCA 58.145 45.000 0.00 0.00 0.00 3.91
2442 5690 2.973694 AAATGGATGATGTGGCAAGC 57.026 45.000 0.00 0.00 0.00 4.01
2443 5691 6.401047 AGATAAAATGGATGATGTGGCAAG 57.599 37.500 0.00 0.00 0.00 4.01
2444 5692 7.289310 TCTAGATAAAATGGATGATGTGGCAA 58.711 34.615 0.00 0.00 0.00 4.52
2445 5693 6.840527 TCTAGATAAAATGGATGATGTGGCA 58.159 36.000 0.00 0.00 0.00 4.92
2446 5694 7.934855 ATCTAGATAAAATGGATGATGTGGC 57.065 36.000 2.53 0.00 0.00 5.01
2480 5728 4.468868 AGTGGGAGTAACATAGGTGGTAAC 59.531 45.833 0.00 0.00 0.00 2.50
2481 5729 4.468510 CAGTGGGAGTAACATAGGTGGTAA 59.531 45.833 0.00 0.00 0.00 2.85
2482 5730 4.028131 CAGTGGGAGTAACATAGGTGGTA 58.972 47.826 0.00 0.00 0.00 3.25
2483 5731 2.838202 CAGTGGGAGTAACATAGGTGGT 59.162 50.000 0.00 0.00 0.00 4.16
2484 5732 2.838202 ACAGTGGGAGTAACATAGGTGG 59.162 50.000 0.00 0.00 0.00 4.61
2485 5733 3.369471 CCACAGTGGGAGTAACATAGGTG 60.369 52.174 12.40 0.00 32.67 4.00
2486 5734 2.838202 CCACAGTGGGAGTAACATAGGT 59.162 50.000 12.40 0.00 32.67 3.08
2487 5735 3.543680 CCACAGTGGGAGTAACATAGG 57.456 52.381 12.40 0.00 32.67 2.57
2499 5747 1.633774 ACTGAGACTACCCACAGTGG 58.366 55.000 13.35 13.35 41.16 4.00
2500 5748 3.367498 GCTTACTGAGACTACCCACAGTG 60.367 52.174 0.00 0.00 42.37 3.66
2501 5749 2.826725 GCTTACTGAGACTACCCACAGT 59.173 50.000 0.00 0.00 44.17 3.55
2502 5750 3.093057 AGCTTACTGAGACTACCCACAG 58.907 50.000 0.00 0.00 36.58 3.66
2503 5751 3.170991 AGCTTACTGAGACTACCCACA 57.829 47.619 0.00 0.00 0.00 4.17
2504 5752 4.336153 GTCTAGCTTACTGAGACTACCCAC 59.664 50.000 6.37 0.00 37.27 4.61
2505 5753 4.227754 AGTCTAGCTTACTGAGACTACCCA 59.772 45.833 13.31 0.00 46.30 4.51
2506 5754 4.784177 AGTCTAGCTTACTGAGACTACCC 58.216 47.826 13.31 0.00 46.30 3.69
2511 5759 5.183228 AGACAGAGTCTAGCTTACTGAGAC 58.817 45.833 6.17 5.87 41.51 3.36
2512 5760 5.188948 AGAGACAGAGTCTAGCTTACTGAGA 59.811 44.000 6.17 0.00 43.53 3.27
2617 5866 5.567823 CGGTGTATGTATATGTATGGCACCA 60.568 44.000 18.25 0.00 42.64 4.17
2624 5873 5.245301 ACAGGCACGGTGTATGTATATGTAT 59.755 40.000 15.57 0.00 33.98 2.29
2726 5975 4.226394 ACCAGCATACCATTACACAAGGTA 59.774 41.667 0.00 0.00 41.72 3.08
2800 6052 5.220777 CGAAGTTGCAGACCTGTTCTTTTAA 60.221 40.000 0.00 0.00 28.96 1.52
2943 6195 6.127647 ACCAACATACAAAATGCTATGTCCTG 60.128 38.462 0.00 0.00 33.33 3.86
3008 6260 3.499338 ACATCCATTTGAAGGACAAGCA 58.501 40.909 0.00 0.00 39.77 3.91
3071 6323 1.338389 CCCTCCGTCCGAAAAAGCTTA 60.338 52.381 0.00 0.00 0.00 3.09
3115 6367 6.825213 TGGAGTTGCTCTAAGAATAGTACGTA 59.175 38.462 0.00 0.00 0.00 3.57
3116 6368 5.651139 TGGAGTTGCTCTAAGAATAGTACGT 59.349 40.000 0.00 0.00 0.00 3.57
3117 6369 6.132791 TGGAGTTGCTCTAAGAATAGTACG 57.867 41.667 0.00 0.00 0.00 3.67
3252 6504 1.517238 TATATGGGCTTGGTCTGGCA 58.483 50.000 0.00 0.00 0.00 4.92
3384 6642 2.355363 CGCAGAAACGTCCGGACA 60.355 61.111 32.80 0.00 0.00 4.02
3988 7246 3.382546 GCAACTTCCCATGAGCAACATAT 59.617 43.478 0.00 0.00 37.46 1.78
4117 7375 5.107133 GCAAATGGACCAAAATCTGATGAG 58.893 41.667 0.00 0.00 0.00 2.90
4339 7597 3.833650 TGTGGGATTACTACCGAAGAACA 59.166 43.478 0.00 0.00 0.00 3.18
4412 7670 1.074084 TGTTACCGCCAAAATCCCTCA 59.926 47.619 0.00 0.00 0.00 3.86
4609 7934 6.006275 AGGCTGCAAATTAATAAGGAGAGA 57.994 37.500 11.22 0.00 0.00 3.10
4723 8061 0.609131 CCGATGTGGGAAGGCAAACT 60.609 55.000 0.00 0.00 0.00 2.66
4731 8069 0.896479 TCGACAGACCGATGTGGGAA 60.896 55.000 0.00 0.00 44.64 3.97
4756 8104 1.352156 GCGAGTAAACGGACAGGCTG 61.352 60.000 14.16 14.16 0.00 4.85
4833 8182 2.681591 GGGGGTTTGAGTAGGCCC 59.318 66.667 0.00 0.00 40.35 5.80
4852 8201 5.261216 AGTGGAAGAAAAGTTGACCAAGAA 58.739 37.500 0.00 0.00 0.00 2.52
4853 8202 4.855340 AGTGGAAGAAAAGTTGACCAAGA 58.145 39.130 0.00 0.00 0.00 3.02
4855 8204 3.951680 GGAGTGGAAGAAAAGTTGACCAA 59.048 43.478 0.00 0.00 0.00 3.67
4856 8205 3.053991 TGGAGTGGAAGAAAAGTTGACCA 60.054 43.478 0.00 0.00 0.00 4.02
4886 8544 1.347378 GCAAATGAAAGCAAAGGGGGA 59.653 47.619 0.00 0.00 0.00 4.81
4903 8562 3.003173 CGGAGGAGGAGGGTGCAA 61.003 66.667 0.00 0.00 0.00 4.08
4916 8575 1.138036 TACAACGGCGATGTCGGAG 59.862 57.895 26.02 0.00 40.23 4.63
4943 8603 1.139734 GAAGATGCCTGAGCGACGA 59.860 57.895 0.00 0.00 44.31 4.20
4975 8635 3.649986 GCAGGCACGTGTGTGGAC 61.650 66.667 18.38 0.00 46.51 4.02
5122 8784 9.406828 ACTTTAGAAAACAAGAAGTTCAACAAC 57.593 29.630 5.50 0.00 40.26 3.32
5126 8788 9.783256 GCTTACTTTAGAAAACAAGAAGTTCAA 57.217 29.630 5.50 0.00 40.26 2.69
5127 8789 8.952278 TGCTTACTTTAGAAAACAAGAAGTTCA 58.048 29.630 5.50 0.00 40.26 3.18
5129 8791 9.736023 CATGCTTACTTTAGAAAACAAGAAGTT 57.264 29.630 0.00 0.00 43.89 2.66
5130 8792 9.120538 TCATGCTTACTTTAGAAAACAAGAAGT 57.879 29.630 0.00 0.00 35.07 3.01
5134 8797 7.274250 GCCATCATGCTTACTTTAGAAAACAAG 59.726 37.037 0.00 0.00 0.00 3.16
5145 8808 1.285962 ACCCTGCCATCATGCTTACTT 59.714 47.619 0.00 0.00 0.00 2.24
5173 8836 3.181517 CGCACAACAACTCATCATCGATT 60.182 43.478 0.00 0.00 0.00 3.34
5341 9029 3.745975 CCGCAAAACTTCATGACAGACTA 59.254 43.478 0.00 0.00 0.00 2.59
5342 9030 2.549754 CCGCAAAACTTCATGACAGACT 59.450 45.455 0.00 0.00 0.00 3.24
5393 9097 2.783135 ACATGGTTGACGAGCTTGATT 58.217 42.857 8.31 0.00 35.54 2.57
5398 9102 2.223595 CGATCTACATGGTTGACGAGCT 60.224 50.000 0.00 0.00 0.00 4.09
5471 9175 6.412943 CGTGATGATTATCAAGTTGCAACATC 59.587 38.462 30.11 21.63 44.49 3.06
5513 9217 2.038975 CGGGAGGAGGAGGACCAA 59.961 66.667 0.00 0.00 38.94 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.