Multiple sequence alignment - TraesCS4D01G180500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G180500 chr4D 100.000 5668 0 0 1 5668 314406546 314400879 0.000000e+00 10467.0
1 TraesCS4D01G180500 chr4D 94.545 55 3 0 4991 5045 491735377 491735323 1.010000e-12 86.1
2 TraesCS4D01G180500 chr4B 96.412 5713 126 35 1 5666 392112475 392106795 0.000000e+00 9341.0
3 TraesCS4D01G180500 chr4A 95.887 2796 91 11 1 2794 162073121 162075894 0.000000e+00 4505.0
4 TraesCS4D01G180500 chr4A 94.895 2527 67 25 2800 5271 162077735 162080254 0.000000e+00 3895.0
5 TraesCS4D01G180500 chr4A 94.845 97 5 0 5273 5369 162082930 162083026 9.840000e-33 152.0
6 TraesCS4D01G180500 chrUn 100.000 394 0 0 3431 3824 479501494 479501887 0.000000e+00 728.0
7 TraesCS4D01G180500 chrUn 98.039 51 1 0 4992 5042 35175142 35175192 7.820000e-14 89.8
8 TraesCS4D01G180500 chr3A 95.833 72 3 0 5597 5668 527572678 527572607 3.590000e-22 117.0
9 TraesCS4D01G180500 chr3A 95.775 71 3 0 5597 5667 692722584 692722514 1.290000e-21 115.0
10 TraesCS4D01G180500 chr3A 94.444 54 3 0 4992 5045 51593271 51593218 3.640000e-12 84.2
11 TraesCS4D01G180500 chr3A 76.667 120 21 6 5450 5568 740911662 740911775 6.130000e-05 60.2
12 TraesCS4D01G180500 chr1A 95.714 70 3 0 5599 5668 556086390 556086459 4.640000e-21 113.0
13 TraesCS4D01G180500 chr7D 94.444 72 4 0 5597 5668 475155266 475155337 1.670000e-20 111.0
14 TraesCS4D01G180500 chr7A 94.444 72 4 0 5597 5668 239188795 239188866 1.670000e-20 111.0
15 TraesCS4D01G180500 chr6D 94.444 72 4 0 5597 5668 19295269 19295340 1.670000e-20 111.0
16 TraesCS4D01G180500 chr6A 94.444 72 4 0 5597 5668 85575937 85576008 1.670000e-20 111.0
17 TraesCS4D01G180500 chr3D 94.444 72 4 0 5597 5668 24569579 24569650 1.670000e-20 111.0
18 TraesCS4D01G180500 chr1D 94.444 72 4 0 5597 5668 466406994 466407065 1.670000e-20 111.0
19 TraesCS4D01G180500 chr2B 98.000 50 1 0 4993 5042 67977275 67977324 2.810000e-13 87.9
20 TraesCS4D01G180500 chr5B 88.710 62 6 1 4980 5041 430325791 430325851 2.190000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G180500 chr4D 314400879 314406546 5667 True 10467.000000 10467 100.000 1 5668 1 chr4D.!!$R1 5667
1 TraesCS4D01G180500 chr4B 392106795 392112475 5680 True 9341.000000 9341 96.412 1 5666 1 chr4B.!!$R1 5665
2 TraesCS4D01G180500 chr4A 162073121 162083026 9905 False 2850.666667 4505 95.209 1 5369 3 chr4A.!!$F1 5368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 229 1.532794 TGTTTGGGACATGGGTGGC 60.533 57.895 0.00 0.0 39.30 5.01 F
943 947 2.024414 GCTGAAATTCCCGTGCCTTAT 58.976 47.619 0.00 0.0 0.00 1.73 F
2461 2469 1.900016 CCAAAGCAGTGCTGGCTGA 60.900 57.895 20.55 0.0 41.66 4.26 F
4311 6167 0.250901 GGCGGTGCATCTGGGATAAT 60.251 55.000 0.00 0.0 0.00 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1543 1547 7.148340 GGCTGATATGGATTAGTGAAATACTGC 60.148 40.741 0.00 0.0 40.65 4.40 R
2491 2499 2.104331 CTGGCCTCGCGAATACGT 59.896 61.111 11.33 0.0 41.98 3.57 R
4368 6224 1.216178 CCTTTTGCTTGCCCATCCG 59.784 57.895 0.00 0.0 0.00 4.18 R
5439 10016 0.035439 TTTGGATGGAGGTCTTCGGC 60.035 55.000 0.00 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 229 1.532794 TGTTTGGGACATGGGTGGC 60.533 57.895 0.00 0.00 39.30 5.01
552 554 7.309316 CCTTGGCATAAATTTTCCAGCAAATTT 60.309 33.333 0.00 9.38 44.72 1.82
553 555 6.910995 TGGCATAAATTTTCCAGCAAATTTG 58.089 32.000 14.03 14.03 43.24 2.32
651 653 3.071602 GCTAGGATTTGGATCTAGGTGCA 59.928 47.826 0.00 0.00 32.66 4.57
884 888 7.526608 TGTGTTTTCTATCAATAAAGAAGGCG 58.473 34.615 0.00 0.00 33.49 5.52
943 947 2.024414 GCTGAAATTCCCGTGCCTTAT 58.976 47.619 0.00 0.00 0.00 1.73
1163 1167 6.441222 ACTATGGAGGTATGTGTTCCTCTAA 58.559 40.000 10.39 1.65 46.56 2.10
1462 1466 2.368439 TGCACACCTGGCTATGAATTC 58.632 47.619 0.00 0.00 0.00 2.17
1543 1547 2.300152 TGGCTCAGTTGTAGGAAGTCAG 59.700 50.000 0.00 0.00 0.00 3.51
1682 1686 2.224621 ACTGGCACATCTGTTGCTAGTT 60.225 45.455 7.45 0.00 45.69 2.24
2461 2469 1.900016 CCAAAGCAGTGCTGGCTGA 60.900 57.895 20.55 0.00 41.66 4.26
2491 2499 1.271856 TAAGATCCGCCACTTGGTCA 58.728 50.000 0.00 0.00 37.57 4.02
2590 2598 1.938577 TGTATCTCGGCGTAGTGACTC 59.061 52.381 6.85 0.27 0.00 3.36
2936 4786 7.772292 CCAAGGATGAAAATCTGATGAAGACTA 59.228 37.037 0.00 0.00 37.88 2.59
3429 5282 1.412343 GGTGTTGCTGAAATGGTTGGT 59.588 47.619 0.00 0.00 0.00 3.67
3871 5724 5.648526 TGTTGCTAAAAGGAGTGTTGTTGTA 59.351 36.000 0.00 0.00 0.00 2.41
4259 6115 2.739379 CGAAAAGGTCTTTCTCAGGAGC 59.261 50.000 0.00 0.00 31.45 4.70
4311 6167 0.250901 GGCGGTGCATCTGGGATAAT 60.251 55.000 0.00 0.00 0.00 1.28
4344 6200 4.026356 AGGCTACATTGCTCAAGAAACT 57.974 40.909 0.00 0.00 0.00 2.66
4406 6262 1.398390 GCATTGTTAACGAGGCTCCAG 59.602 52.381 22.22 0.00 34.45 3.86
4562 6418 6.655425 ACTGAGTTAAGGAGCAACTAATTTCC 59.345 38.462 0.00 0.00 36.38 3.13
4654 6510 1.064654 GCTTATGGCTACTGCAGTTGC 59.935 52.381 35.55 35.55 44.08 4.17
4758 6620 7.335627 CCAACAAGTGGTCATAGAGGTATTTA 58.664 38.462 0.00 0.00 43.20 1.40
4904 6773 0.958382 GATGGCCGGCAACTGTGTTA 60.958 55.000 30.85 2.36 0.00 2.41
5024 6898 5.888161 GCTCCCTCTCTGATTTCCATTAAAA 59.112 40.000 0.00 0.00 0.00 1.52
5053 6927 4.872691 CACAATGTCTTCCTAACAGGCTAG 59.127 45.833 0.00 0.00 34.61 3.42
5078 6952 5.043189 GCTACAGCGAAAAACATAAACCT 57.957 39.130 0.00 0.00 0.00 3.50
5083 6957 2.655001 GCGAAAAACATAAACCTGCGAC 59.345 45.455 0.00 0.00 0.00 5.19
5111 6986 2.028112 TCAGAATAACGCAGTCAGGCTT 60.028 45.455 0.00 0.00 45.00 4.35
5112 6987 3.194755 TCAGAATAACGCAGTCAGGCTTA 59.805 43.478 0.00 0.00 45.00 3.09
5113 6988 4.122776 CAGAATAACGCAGTCAGGCTTAT 58.877 43.478 0.00 0.00 45.00 1.73
5114 6989 4.210120 CAGAATAACGCAGTCAGGCTTATC 59.790 45.833 0.00 0.00 45.00 1.75
5118 6993 1.915228 GCAGTCAGGCTTATCCCCA 59.085 57.895 0.00 0.00 34.51 4.96
5151 7026 3.650942 CCCAACCACAGGAAGGCTATATA 59.349 47.826 0.00 0.00 0.00 0.86
5152 7027 4.289672 CCCAACCACAGGAAGGCTATATAT 59.710 45.833 0.00 0.00 0.00 0.86
5153 7028 5.491982 CCAACCACAGGAAGGCTATATATC 58.508 45.833 0.00 0.00 0.00 1.63
5154 7029 5.013079 CCAACCACAGGAAGGCTATATATCA 59.987 44.000 0.00 0.00 0.00 2.15
5155 7030 6.169094 CAACCACAGGAAGGCTATATATCAG 58.831 44.000 0.00 0.00 0.00 2.90
5156 7031 5.655394 ACCACAGGAAGGCTATATATCAGA 58.345 41.667 0.00 0.00 0.00 3.27
5157 7032 6.267635 ACCACAGGAAGGCTATATATCAGAT 58.732 40.000 0.00 0.00 0.00 2.90
5158 7033 7.422512 ACCACAGGAAGGCTATATATCAGATA 58.577 38.462 0.00 0.00 0.00 1.98
5160 7035 8.200792 CCACAGGAAGGCTATATATCAGATAAC 58.799 40.741 0.00 0.00 0.00 1.89
5161 7036 7.918033 CACAGGAAGGCTATATATCAGATAACG 59.082 40.741 0.00 0.00 0.00 3.18
5211 7109 8.688747 ATAAGTTTTCAGAGAATCATCATCCC 57.311 34.615 0.00 0.00 37.82 3.85
5322 9895 1.002900 GCAAAAGTCACGCACTAGCAA 60.003 47.619 0.00 0.00 42.27 3.91
5369 9942 1.204467 CCACACAACAACAGCTTGGTT 59.796 47.619 0.00 0.00 0.00 3.67
5370 9943 2.353605 CCACACAACAACAGCTTGGTTT 60.354 45.455 0.00 0.00 0.00 3.27
5371 9944 3.119316 CCACACAACAACAGCTTGGTTTA 60.119 43.478 0.00 0.00 0.00 2.01
5372 9945 4.104776 CACACAACAACAGCTTGGTTTAG 58.895 43.478 0.00 0.00 0.00 1.85
5373 9946 3.761752 ACACAACAACAGCTTGGTTTAGT 59.238 39.130 0.00 0.00 0.00 2.24
5414 9991 1.938585 CCTAAGGAGGGACACTGTCA 58.061 55.000 11.34 0.00 39.48 3.58
5439 10016 3.791973 ACAGTGATCCTAAGCGAAGAG 57.208 47.619 0.00 0.00 0.00 2.85
5449 10026 2.574399 GCGAAGAGCCGAAGACCT 59.426 61.111 0.00 0.00 40.81 3.85
5450 10027 1.517475 GCGAAGAGCCGAAGACCTC 60.517 63.158 0.00 0.00 40.81 3.85
5451 10028 1.139947 CGAAGAGCCGAAGACCTCC 59.860 63.158 0.00 0.00 0.00 4.30
5452 10029 1.595993 CGAAGAGCCGAAGACCTCCA 61.596 60.000 0.00 0.00 0.00 3.86
5453 10030 0.827368 GAAGAGCCGAAGACCTCCAT 59.173 55.000 0.00 0.00 0.00 3.41
5454 10031 0.827368 AAGAGCCGAAGACCTCCATC 59.173 55.000 0.00 0.00 0.00 3.51
5455 10032 1.045911 AGAGCCGAAGACCTCCATCC 61.046 60.000 0.00 0.00 0.00 3.51
5456 10033 1.306141 AGCCGAAGACCTCCATCCA 60.306 57.895 0.00 0.00 0.00 3.41
5462 10039 0.332972 AAGACCTCCATCCAAAGGGC 59.667 55.000 0.00 0.00 41.42 5.19
5490 10067 4.637276 TGAAGACTTTTCACCAGCGATTA 58.363 39.130 0.00 0.00 0.00 1.75
5496 10073 3.410631 TTTCACCAGCGATTACCTCAA 57.589 42.857 0.00 0.00 0.00 3.02
5497 10074 3.410631 TTCACCAGCGATTACCTCAAA 57.589 42.857 0.00 0.00 0.00 2.69
5498 10075 2.695359 TCACCAGCGATTACCTCAAAC 58.305 47.619 0.00 0.00 0.00 2.93
5541 10118 7.311360 CCTTAGGACCTCTTGTTTTCCTAGATT 60.311 40.741 0.00 0.00 40.91 2.40
5543 10120 7.569599 AGGACCTCTTGTTTTCCTAGATTTA 57.430 36.000 0.00 0.00 36.67 1.40
5546 10123 8.268605 GGACCTCTTGTTTTCCTAGATTTATCT 58.731 37.037 0.00 0.00 40.86 1.98
5577 10154 3.057033 AGCCAATCATGAAGCAACTTGAC 60.057 43.478 15.54 1.53 0.00 3.18
5627 10204 1.983972 CTCCAGTGCTTGTAGTCGTC 58.016 55.000 0.00 0.00 0.00 4.20
5628 10205 0.240145 TCCAGTGCTTGTAGTCGTCG 59.760 55.000 0.00 0.00 0.00 5.12
5636 10213 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
5638 10215 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
5639 10216 0.745845 TAGTCGTCGCTAGGTGGTCC 60.746 60.000 0.00 0.00 0.00 4.46
5640 10217 2.034532 TCGTCGCTAGGTGGTCCA 59.965 61.111 0.00 0.00 35.89 4.02
5641 10218 1.379443 TCGTCGCTAGGTGGTCCAT 60.379 57.895 0.00 0.00 35.89 3.41
5643 10220 1.144057 GTCGCTAGGTGGTCCATGG 59.856 63.158 4.97 4.97 35.89 3.66
5644 10221 1.001120 TCGCTAGGTGGTCCATGGA 59.999 57.895 11.44 11.44 35.89 3.41
5645 10222 1.144057 CGCTAGGTGGTCCATGGAC 59.856 63.158 33.14 33.14 43.87 4.02
5647 10224 0.912486 GCTAGGTGGTCCATGGACTT 59.088 55.000 37.26 24.23 44.04 3.01
5649 10226 1.210478 CTAGGTGGTCCATGGACTTGG 59.790 57.143 37.26 21.17 44.04 3.61
5650 10227 0.475632 AGGTGGTCCATGGACTTGGA 60.476 55.000 37.26 19.99 43.56 3.53
5662 10239 8.062065 TCCATGGACTTGGATGTAATTTTTAC 57.938 34.615 11.44 0.00 40.90 2.01
5664 10241 8.531146 CCATGGACTTGGATGTAATTTTTACTT 58.469 33.333 5.56 0.00 39.25 2.24
5665 10242 9.573133 CATGGACTTGGATGTAATTTTTACTTC 57.427 33.333 5.27 5.27 0.00 3.01
5666 10243 8.934023 TGGACTTGGATGTAATTTTTACTTCT 57.066 30.769 10.99 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 82 6.350110 GCATCAAAGCACCAATAAAGACCTAA 60.350 38.462 0.00 0.00 0.00 2.69
317 319 2.618302 CGTGGTAAGAGAGGACAGAGGA 60.618 54.545 0.00 0.00 0.00 3.71
479 481 1.124780 TCACACGTTCTCCCTTTCCA 58.875 50.000 0.00 0.00 0.00 3.53
512 514 4.098914 TGCCAAGGGATATGATTACCAC 57.901 45.455 0.00 0.00 0.00 4.16
572 574 1.522668 TGACTCATGGCCAAAACGAG 58.477 50.000 10.96 15.92 0.00 4.18
726 728 7.357368 CGCGTACTCAAATAATACAGTTAGCTC 60.357 40.741 0.00 0.00 0.00 4.09
728 730 6.197842 ACGCGTACTCAAATAATACAGTTAGC 59.802 38.462 11.67 0.00 0.00 3.09
800 804 6.581919 TGAAACACATCATTTGCAATCTTACG 59.418 34.615 0.00 0.00 0.00 3.18
884 888 5.973565 GCCATGCAAACAACTTATAGATGAC 59.026 40.000 0.00 0.00 0.00 3.06
943 947 6.775629 GGGCTACCAATATTTCCAAATACTCA 59.224 38.462 0.00 0.00 33.63 3.41
1163 1167 8.762481 AACATAAAAGGAGTTTAACAGGAACT 57.238 30.769 0.00 0.00 39.90 3.01
1462 1466 9.081997 GTGTACTGATCTTGTGAAGAATAAGAG 57.918 37.037 0.00 0.00 39.14 2.85
1543 1547 7.148340 GGCTGATATGGATTAGTGAAATACTGC 60.148 40.741 0.00 0.00 40.65 4.40
2461 2469 7.187824 AGTGGCGGATCTTATATCATGTTAT 57.812 36.000 2.02 2.02 0.00 1.89
2491 2499 2.104331 CTGGCCTCGCGAATACGT 59.896 61.111 11.33 0.00 41.98 3.57
2590 2598 2.557056 TCAGTTTCCAGTAGACCTCACG 59.443 50.000 0.00 0.00 0.00 4.35
2943 4793 3.009473 AGCAGCCTGAAACTTCTGGATAA 59.991 43.478 16.97 0.00 45.89 1.75
2953 4806 2.185004 TACCTGAAGCAGCCTGAAAC 57.815 50.000 0.00 0.00 0.00 2.78
3429 5282 4.531854 TGTCTTTGTGAAAATCCACAGGA 58.468 39.130 0.00 0.00 46.32 3.86
3871 5724 2.695585 ACTTCAGAAGGTTCACCCTCT 58.304 47.619 14.90 0.00 45.47 3.69
4311 6167 4.264253 CAATGTAGCCTTCACATCCTTCA 58.736 43.478 0.00 0.00 35.58 3.02
4368 6224 1.216178 CCTTTTGCTTGCCCATCCG 59.784 57.895 0.00 0.00 0.00 4.18
4406 6262 1.269569 GCCAACCTTAACAACACCAGC 60.270 52.381 0.00 0.00 0.00 4.85
4562 6418 6.568869 TGTCACAACACCCAGAAAATAAAAG 58.431 36.000 0.00 0.00 0.00 2.27
4654 6510 3.309682 TGTCAGTCGTCAAGCTGAAAAAG 59.690 43.478 0.00 0.00 42.51 2.27
4758 6620 3.758554 CAGAAACGATTTTCCCTCACCAT 59.241 43.478 0.00 0.00 42.00 3.55
5024 6898 5.690865 TGTTAGGAAGACATTGTGGTTTCT 58.309 37.500 0.00 0.00 0.00 2.52
5053 6927 2.619013 ATGTTTTTCGCTGTAGCTGC 57.381 45.000 0.00 0.00 39.32 5.25
5078 6952 2.507339 TATTCTGATCATGCGTCGCA 57.493 45.000 24.05 24.05 44.86 5.10
5083 6957 2.541346 ACTGCGTTATTCTGATCATGCG 59.459 45.455 0.00 0.00 0.00 4.73
5151 7026 5.957842 TTTGCAAAACCTCGTTATCTGAT 57.042 34.783 10.02 0.00 0.00 2.90
5152 7027 5.759506 TTTTGCAAAACCTCGTTATCTGA 57.240 34.783 20.46 0.00 0.00 3.27
5187 7085 6.763135 CGGGATGATGATTCTCTGAAAACTTA 59.237 38.462 0.00 0.00 0.00 2.24
5322 9895 2.092753 TCATACCCTTCTACGGTCGTCT 60.093 50.000 0.00 0.00 34.66 4.18
5372 9945 3.075148 GGAGCTCCCAGTTTGACTAAAC 58.925 50.000 23.19 0.00 45.13 2.01
5373 9946 2.289444 CGGAGCTCCCAGTTTGACTAAA 60.289 50.000 27.20 0.00 34.14 1.85
5414 9991 2.766263 TCGCTTAGGATCACTGTTGGAT 59.234 45.455 0.00 0.00 0.00 3.41
5439 10016 0.035439 TTTGGATGGAGGTCTTCGGC 60.035 55.000 0.00 0.00 0.00 5.54
5441 10018 1.407437 CCCTTTGGATGGAGGTCTTCG 60.407 57.143 0.00 0.00 0.00 3.79
5442 10019 1.683319 GCCCTTTGGATGGAGGTCTTC 60.683 57.143 0.00 0.00 0.00 2.87
5443 10020 0.332972 GCCCTTTGGATGGAGGTCTT 59.667 55.000 0.00 0.00 0.00 3.01
5445 10022 0.394899 CTGCCCTTTGGATGGAGGTC 60.395 60.000 0.00 0.00 0.00 3.85
5446 10023 1.693640 CTGCCCTTTGGATGGAGGT 59.306 57.895 0.00 0.00 0.00 3.85
5448 10025 1.755783 GGCTGCCCTTTGGATGGAG 60.756 63.158 7.66 0.00 0.00 3.86
5449 10026 2.360191 GGCTGCCCTTTGGATGGA 59.640 61.111 7.66 0.00 0.00 3.41
5450 10027 2.761213 GGGCTGCCCTTTGGATGG 60.761 66.667 30.42 0.00 41.34 3.51
5462 10039 1.882623 GGTGAAAAGTCTTCAGGGCTG 59.117 52.381 0.00 0.00 0.00 4.85
5510 10087 4.625607 AACAAGAGGTCCTAAGGTGAAG 57.374 45.455 0.00 0.00 0.00 3.02
5512 10089 4.202430 GGAAAACAAGAGGTCCTAAGGTGA 60.202 45.833 0.00 0.00 0.00 4.02
5520 10097 8.268605 AGATAAATCTAGGAAAACAAGAGGTCC 58.731 37.037 0.00 0.00 34.85 4.46
5523 10100 7.554118 TGCAGATAAATCTAGGAAAACAAGAGG 59.446 37.037 0.00 0.00 34.85 3.69
5541 10118 8.009622 TCATGATTGGCTTATTTTGCAGATAA 57.990 30.769 0.00 4.99 0.00 1.75
5543 10120 6.474140 TCATGATTGGCTTATTTTGCAGAT 57.526 33.333 0.00 0.00 0.00 2.90
5546 10123 4.871557 GCTTCATGATTGGCTTATTTTGCA 59.128 37.500 0.00 0.00 0.00 4.08
5607 10184 0.038159 ACGACTACAAGCACTGGAGC 60.038 55.000 0.00 0.00 40.05 4.70
5627 10204 1.144057 GTCCATGGACCACCTAGCG 59.856 63.158 31.37 0.00 39.08 4.26
5628 10205 0.912486 AAGTCCATGGACCACCTAGC 59.088 55.000 36.09 13.44 45.59 3.42
5638 10215 8.066612 AGTAAAAATTACATCCAAGTCCATGG 57.933 34.615 4.97 4.97 42.12 3.66
5639 10216 9.573133 GAAGTAAAAATTACATCCAAGTCCATG 57.427 33.333 3.37 0.00 0.00 3.66
5640 10217 9.533831 AGAAGTAAAAATTACATCCAAGTCCAT 57.466 29.630 3.37 0.00 0.00 3.41
5641 10218 8.934023 AGAAGTAAAAATTACATCCAAGTCCA 57.066 30.769 3.37 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.