Multiple sequence alignment - TraesCS4D01G180200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G180200 chr4D 100.000 6086 0 0 1 6086 314062440 314068525 0.000000e+00 11239.0
1 TraesCS4D01G180200 chr4D 76.847 609 104 18 5489 6082 480300591 480301177 5.920000e-80 309.0
2 TraesCS4D01G180200 chr4D 100.000 34 0 0 5350 5383 314067757 314067790 5.090000e-06 63.9
3 TraesCS4D01G180200 chr4D 100.000 34 0 0 5318 5351 314067789 314067822 5.090000e-06 63.9
4 TraesCS4D01G180200 chr4A 96.025 4730 124 27 635 5350 162427620 162422941 0.000000e+00 7635.0
5 TraesCS4D01G180200 chr4A 90.404 396 25 5 5692 6085 162422298 162421914 5.440000e-140 508.0
6 TraesCS4D01G180200 chr4A 84.836 488 51 8 162 647 162439707 162439241 2.570000e-128 470.0
7 TraesCS4D01G180200 chr4A 85.955 356 44 5 5350 5700 162422973 162422619 5.760000e-100 375.0
8 TraesCS4D01G180200 chr4A 92.105 76 5 1 1 76 162439782 162439708 8.340000e-19 106.0
9 TraesCS4D01G180200 chr4B 95.253 4677 150 36 622 5271 391537216 391541847 0.000000e+00 7341.0
10 TraesCS4D01G180200 chr4B 89.114 395 26 7 5692 6084 391542873 391543252 5.520000e-130 475.0
11 TraesCS4D01G180200 chr5A 78.983 590 95 16 5503 6084 477711934 477712502 5.760000e-100 375.0
12 TraesCS4D01G180200 chr1B 83.578 408 55 10 5513 5915 14931946 14932346 7.450000e-99 372.0
13 TraesCS4D01G180200 chr1B 85.813 289 29 4 5798 6085 28648750 28649027 4.610000e-76 296.0
14 TraesCS4D01G180200 chr1B 78.947 95 14 6 5556 5647 14168765 14168674 6.590000e-05 60.2
15 TraesCS4D01G180200 chr6B 84.753 223 29 3 5676 5893 176254345 176254123 1.030000e-52 219.0
16 TraesCS4D01G180200 chr2A 85.393 178 23 2 5110 5284 497699253 497699430 1.350000e-41 182.0
17 TraesCS4D01G180200 chr2B 73.367 398 96 7 5622 6016 750007962 750008352 8.230000e-29 139.0
18 TraesCS4D01G180200 chr2D 74.659 367 57 19 5140 5489 615712840 615713187 4.950000e-26 130.0
19 TraesCS4D01G180200 chr2D 87.838 74 7 2 5106 5177 567566301 567566374 1.090000e-12 86.1
20 TraesCS4D01G180200 chr1D 77.907 172 31 7 5116 5283 25391357 25391189 3.880000e-17 100.0
21 TraesCS4D01G180200 chr7B 84.783 92 12 1 5195 5284 731430674 731430765 2.340000e-14 91.6
22 TraesCS4D01G180200 chr5B 84.000 75 11 1 5116 5190 129380238 129380311 3.040000e-08 71.3
23 TraesCS4D01G180200 chr1A 83.784 74 8 3 5108 5177 523083884 523083957 3.940000e-07 67.6
24 TraesCS4D01G180200 chr3B 83.582 67 9 2 5107 5171 818862313 818862379 1.830000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G180200 chr4D 314062440 314068525 6085 False 3788.933333 11239 100.000000 1 6086 3 chr4D.!!$F2 6085
1 TraesCS4D01G180200 chr4D 480300591 480301177 586 False 309.000000 309 76.847000 5489 6082 1 chr4D.!!$F1 593
2 TraesCS4D01G180200 chr4A 162421914 162427620 5706 True 2839.333333 7635 90.794667 635 6085 3 chr4A.!!$R1 5450
3 TraesCS4D01G180200 chr4A 162439241 162439782 541 True 288.000000 470 88.470500 1 647 2 chr4A.!!$R2 646
4 TraesCS4D01G180200 chr4B 391537216 391543252 6036 False 3908.000000 7341 92.183500 622 6084 2 chr4B.!!$F1 5462
5 TraesCS4D01G180200 chr5A 477711934 477712502 568 False 375.000000 375 78.983000 5503 6084 1 chr5A.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 477 0.107214 ATGTATCACCGGCCCAACTG 60.107 55.0 0.00 0.0 0.00 3.16 F
1062 1078 0.034960 GCCCCCAGTTTCTTCTCCTC 60.035 60.0 0.00 0.0 0.00 3.71 F
1820 1848 1.177401 CCTCGGAGTGATCTGACACA 58.823 55.0 4.02 0.0 42.45 3.72 F
1853 1881 1.308998 CGCCCTTATTACCCTGCTTG 58.691 55.0 0.00 0.0 0.00 4.01 F
1864 1892 1.839424 CCCTGCTTGAACTAAAGGGG 58.161 55.0 0.00 0.0 43.40 4.79 F
3154 3192 3.059884 GTGGGTGTATGATATGTGAGCG 58.940 50.0 0.00 0.0 0.00 5.03 F
4190 4231 7.856145 ACCTGAAGATACAACATTTCTCATC 57.144 36.0 0.00 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1594 0.744414 TAGGCACTTTGGCAGATCGC 60.744 55.000 2.29 1.55 46.46 4.58 R
2832 2870 1.608717 GCCTGTCGGACCTGTCAGAT 61.609 60.000 5.55 0.00 36.30 2.90 R
3154 3192 5.351740 GTGGTATCAAAAGTGCTAGAGAACC 59.648 44.000 0.00 0.00 0.00 3.62 R
3753 3793 5.630121 AGTTGTATTCCCAATGAACACTCA 58.370 37.500 0.00 0.00 35.31 3.41 R
4190 4231 7.428826 ACAAGGAGCTGAAAATTTACAAGAAG 58.571 34.615 0.00 0.00 0.00 2.85 R
4564 4605 0.457851 CTGCACCGACTAGGAAGGAG 59.542 60.000 7.30 1.42 45.00 3.69 R
5389 5654 0.679505 GCTAGGCCCGTACATGATCA 59.320 55.000 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.502527 ATGGGGGTTTAAGGCGTCCA 61.503 55.000 0.00 0.00 0.00 4.02
65 66 7.451732 AGATGCTCAAGATATGCTAATGTCTT 58.548 34.615 0.00 0.00 42.96 3.01
71 72 5.894298 AGATATGCTAATGTCTTGACCCA 57.106 39.130 0.00 0.00 30.63 4.51
73 74 2.489938 TGCTAATGTCTTGACCCACC 57.510 50.000 0.00 0.00 0.00 4.61
75 76 2.375174 TGCTAATGTCTTGACCCACCTT 59.625 45.455 0.00 0.00 0.00 3.50
76 77 3.181434 TGCTAATGTCTTGACCCACCTTT 60.181 43.478 0.00 0.00 0.00 3.11
77 78 4.042311 TGCTAATGTCTTGACCCACCTTTA 59.958 41.667 0.00 0.00 0.00 1.85
78 79 5.193679 GCTAATGTCTTGACCCACCTTTAT 58.806 41.667 0.00 0.00 0.00 1.40
79 80 5.066505 GCTAATGTCTTGACCCACCTTTATG 59.933 44.000 0.00 0.00 0.00 1.90
80 81 3.433306 TGTCTTGACCCACCTTTATGG 57.567 47.619 0.00 0.00 42.93 2.74
82 83 3.396276 TGTCTTGACCCACCTTTATGGAA 59.604 43.478 0.00 0.00 43.02 3.53
84 85 4.459337 GTCTTGACCCACCTTTATGGAAAG 59.541 45.833 0.00 0.00 43.02 2.62
85 86 2.802719 TGACCCACCTTTATGGAAAGC 58.197 47.619 0.00 0.00 43.02 3.51
86 87 2.109128 TGACCCACCTTTATGGAAAGCA 59.891 45.455 0.00 0.00 43.02 3.91
87 88 3.161866 GACCCACCTTTATGGAAAGCAA 58.838 45.455 0.00 0.00 43.02 3.91
88 89 3.576550 GACCCACCTTTATGGAAAGCAAA 59.423 43.478 0.00 0.00 43.02 3.68
89 90 3.578282 ACCCACCTTTATGGAAAGCAAAG 59.422 43.478 0.00 0.00 43.02 2.77
90 91 3.578282 CCCACCTTTATGGAAAGCAAAGT 59.422 43.478 0.00 0.00 43.02 2.66
91 92 4.040339 CCCACCTTTATGGAAAGCAAAGTT 59.960 41.667 0.00 0.00 43.02 2.66
92 93 4.990426 CCACCTTTATGGAAAGCAAAGTTG 59.010 41.667 0.00 0.00 43.02 3.16
93 94 4.448732 CACCTTTATGGAAAGCAAAGTTGC 59.551 41.667 7.98 7.98 46.22 4.17
107 108 4.848757 CAAAGTTGCACTCTAAAGGTGAC 58.151 43.478 0.00 0.00 36.89 3.67
108 109 3.838244 AGTTGCACTCTAAAGGTGACA 57.162 42.857 0.00 0.00 36.89 3.58
109 110 4.150897 AGTTGCACTCTAAAGGTGACAA 57.849 40.909 0.00 0.00 36.89 3.18
110 111 4.130118 AGTTGCACTCTAAAGGTGACAAG 58.870 43.478 0.00 0.00 36.89 3.16
111 112 4.127171 GTTGCACTCTAAAGGTGACAAGA 58.873 43.478 0.00 0.00 36.89 3.02
112 113 4.623932 TGCACTCTAAAGGTGACAAGAT 57.376 40.909 0.00 0.00 36.89 2.40
113 114 4.318332 TGCACTCTAAAGGTGACAAGATG 58.682 43.478 0.00 0.00 36.89 2.90
114 115 4.202357 TGCACTCTAAAGGTGACAAGATGT 60.202 41.667 0.00 0.00 36.89 3.06
115 116 4.757149 GCACTCTAAAGGTGACAAGATGTT 59.243 41.667 0.00 0.00 36.89 2.71
116 117 5.334414 GCACTCTAAAGGTGACAAGATGTTG 60.334 44.000 0.13 0.13 36.89 3.33
117 118 5.180117 CACTCTAAAGGTGACAAGATGTTGG 59.820 44.000 7.59 0.00 38.07 3.77
118 119 5.071788 ACTCTAAAGGTGACAAGATGTTGGA 59.928 40.000 7.59 0.00 38.07 3.53
119 120 6.126863 TCTAAAGGTGACAAGATGTTGGAT 57.873 37.500 7.59 0.00 38.07 3.41
120 121 7.038302 ACTCTAAAGGTGACAAGATGTTGGATA 60.038 37.037 7.59 0.00 38.07 2.59
121 122 7.331026 TCTAAAGGTGACAAGATGTTGGATAG 58.669 38.462 7.59 0.00 38.07 2.08
122 123 5.762179 AAGGTGACAAGATGTTGGATAGA 57.238 39.130 7.59 0.00 38.07 1.98
123 124 5.091261 AGGTGACAAGATGTTGGATAGAC 57.909 43.478 7.59 0.00 38.07 2.59
124 125 4.080863 AGGTGACAAGATGTTGGATAGACC 60.081 45.833 7.59 5.34 38.07 3.85
125 126 4.192317 GTGACAAGATGTTGGATAGACCC 58.808 47.826 7.59 0.00 38.07 4.46
126 127 3.199946 TGACAAGATGTTGGATAGACCCC 59.800 47.826 7.59 0.00 38.07 4.95
127 128 2.509964 ACAAGATGTTGGATAGACCCCC 59.490 50.000 7.59 0.00 38.07 5.40
128 129 2.780010 CAAGATGTTGGATAGACCCCCT 59.220 50.000 0.00 0.00 38.00 4.79
129 130 2.695585 AGATGTTGGATAGACCCCCTC 58.304 52.381 0.00 0.00 38.00 4.30
130 131 2.251338 AGATGTTGGATAGACCCCCTCT 59.749 50.000 0.00 0.00 38.00 3.69
131 132 1.879575 TGTTGGATAGACCCCCTCTG 58.120 55.000 0.00 0.00 38.00 3.35
132 133 1.132500 GTTGGATAGACCCCCTCTGG 58.868 60.000 0.00 0.00 38.00 3.86
133 134 0.694444 TTGGATAGACCCCCTCTGGC 60.694 60.000 0.00 0.00 38.00 4.85
134 135 1.237458 GGATAGACCCCCTCTGGCT 59.763 63.158 0.00 0.00 0.00 4.75
135 136 0.400670 GGATAGACCCCCTCTGGCTT 60.401 60.000 0.00 0.00 0.00 4.35
136 137 1.512735 GATAGACCCCCTCTGGCTTT 58.487 55.000 0.00 0.00 0.00 3.51
137 138 1.418264 GATAGACCCCCTCTGGCTTTC 59.582 57.143 0.00 0.00 0.00 2.62
138 139 0.417841 TAGACCCCCTCTGGCTTTCT 59.582 55.000 0.00 0.00 0.00 2.52
139 140 1.204113 AGACCCCCTCTGGCTTTCTG 61.204 60.000 0.00 0.00 0.00 3.02
140 141 2.203549 GACCCCCTCTGGCTTTCTGG 62.204 65.000 0.00 0.00 0.00 3.86
141 142 2.234296 CCCCCTCTGGCTTTCTGGT 61.234 63.158 0.00 0.00 0.00 4.00
142 143 1.301293 CCCCTCTGGCTTTCTGGTC 59.699 63.158 0.00 0.00 0.00 4.02
143 144 1.492133 CCCCTCTGGCTTTCTGGTCA 61.492 60.000 0.00 0.00 0.00 4.02
144 145 0.322008 CCCTCTGGCTTTCTGGTCAC 60.322 60.000 0.00 0.00 0.00 3.67
145 146 0.397941 CCTCTGGCTTTCTGGTCACA 59.602 55.000 0.00 0.00 0.00 3.58
146 147 1.202806 CCTCTGGCTTTCTGGTCACAA 60.203 52.381 0.00 0.00 0.00 3.33
147 148 2.149578 CTCTGGCTTTCTGGTCACAAG 58.850 52.381 0.00 0.00 0.00 3.16
148 149 0.595095 CTGGCTTTCTGGTCACAAGC 59.405 55.000 0.00 0.00 41.93 4.01
150 151 3.027419 GCTTTCTGGTCACAAGCCT 57.973 52.632 0.00 0.00 37.54 4.58
151 152 0.595095 GCTTTCTGGTCACAAGCCTG 59.405 55.000 0.00 0.00 37.54 4.85
152 153 1.815408 GCTTTCTGGTCACAAGCCTGA 60.815 52.381 0.00 0.00 37.54 3.86
153 154 2.787994 CTTTCTGGTCACAAGCCTGAT 58.212 47.619 0.00 0.00 34.65 2.90
154 155 2.189594 TTCTGGTCACAAGCCTGATG 57.810 50.000 0.00 0.00 34.65 3.07
155 156 0.325933 TCTGGTCACAAGCCTGATGG 59.674 55.000 0.00 0.00 0.00 3.51
165 166 2.672908 CCTGATGGCTGGCAGTGA 59.327 61.111 17.16 3.01 0.00 3.41
166 167 1.748122 CCTGATGGCTGGCAGTGAC 60.748 63.158 17.16 7.65 0.00 3.67
167 168 1.002990 CTGATGGCTGGCAGTGACA 60.003 57.895 17.16 13.17 0.00 3.58
168 169 1.002990 TGATGGCTGGCAGTGACAG 60.003 57.895 22.48 22.48 42.51 3.51
169 170 1.297689 GATGGCTGGCAGTGACAGA 59.702 57.895 30.68 10.30 42.14 3.41
170 171 0.743701 GATGGCTGGCAGTGACAGAG 60.744 60.000 30.68 5.37 42.14 3.35
207 208 9.243105 TGAATAAAACTCTTTAATTCCCTGGAG 57.757 33.333 0.00 0.00 30.87 3.86
209 210 9.822727 AATAAAACTCTTTAATTCCCTGGAGAA 57.177 29.630 0.00 0.00 30.87 2.87
213 214 8.727100 AACTCTTTAATTCCCTGGAGAAAAAT 57.273 30.769 0.00 0.00 0.00 1.82
217 218 9.325248 TCTTTAATTCCCTGGAGAAAAATGATT 57.675 29.630 0.00 0.00 0.00 2.57
245 247 1.193874 GTTTGCTACGGGTCGTGAAAG 59.806 52.381 3.03 0.00 41.39 2.62
253 255 1.332552 CGGGTCGTGAAAGTTTTGACG 60.333 52.381 9.76 9.76 46.57 4.35
262 264 5.031578 GTGAAAGTTTTGACGCATGTACAA 58.968 37.500 0.00 0.00 0.00 2.41
271 273 4.907579 TGACGCATGTACAATAGCATTTG 58.092 39.130 15.58 2.54 0.00 2.32
275 277 7.026631 ACGCATGTACAATAGCATTTGTAAT 57.973 32.000 15.58 6.78 42.15 1.89
303 305 4.264460 TGCGGGCAAACAATAATTTTCT 57.736 36.364 0.00 0.00 0.00 2.52
304 306 4.636249 TGCGGGCAAACAATAATTTTCTT 58.364 34.783 0.00 0.00 0.00 2.52
305 307 5.059833 TGCGGGCAAACAATAATTTTCTTT 58.940 33.333 0.00 0.00 0.00 2.52
306 308 5.529060 TGCGGGCAAACAATAATTTTCTTTT 59.471 32.000 0.00 0.00 0.00 2.27
307 309 6.077197 GCGGGCAAACAATAATTTTCTTTTC 58.923 36.000 0.00 0.00 0.00 2.29
308 310 6.073276 GCGGGCAAACAATAATTTTCTTTTCT 60.073 34.615 0.00 0.00 0.00 2.52
309 311 7.509797 CGGGCAAACAATAATTTTCTTTTCTC 58.490 34.615 0.00 0.00 0.00 2.87
310 312 7.509797 GGGCAAACAATAATTTTCTTTTCTCG 58.490 34.615 0.00 0.00 0.00 4.04
311 313 7.383843 GGGCAAACAATAATTTTCTTTTCTCGA 59.616 33.333 0.00 0.00 0.00 4.04
312 314 8.760569 GGCAAACAATAATTTTCTTTTCTCGAA 58.239 29.630 0.00 0.00 0.00 3.71
313 315 9.783425 GCAAACAATAATTTTCTTTTCTCGAAG 57.217 29.630 0.00 0.00 0.00 3.79
316 318 9.678941 AACAATAATTTTCTTTTCTCGAAGGAC 57.321 29.630 0.00 0.00 0.00 3.85
317 319 9.067986 ACAATAATTTTCTTTTCTCGAAGGACT 57.932 29.630 0.00 0.00 0.00 3.85
318 320 9.334693 CAATAATTTTCTTTTCTCGAAGGACTG 57.665 33.333 0.00 0.00 0.00 3.51
319 321 5.948992 ATTTTCTTTTCTCGAAGGACTGG 57.051 39.130 0.00 0.00 0.00 4.00
320 322 2.457366 TCTTTTCTCGAAGGACTGGC 57.543 50.000 0.00 0.00 0.00 4.85
321 323 1.971357 TCTTTTCTCGAAGGACTGGCT 59.029 47.619 0.00 0.00 0.00 4.75
322 324 3.162666 TCTTTTCTCGAAGGACTGGCTA 58.837 45.455 0.00 0.00 0.00 3.93
323 325 3.193691 TCTTTTCTCGAAGGACTGGCTAG 59.806 47.826 0.00 0.00 0.00 3.42
324 326 2.509166 TTCTCGAAGGACTGGCTAGA 57.491 50.000 3.17 0.00 0.00 2.43
325 327 2.738587 TCTCGAAGGACTGGCTAGAT 57.261 50.000 3.17 0.00 0.00 1.98
326 328 2.302260 TCTCGAAGGACTGGCTAGATG 58.698 52.381 3.17 0.00 0.00 2.90
327 329 2.092375 TCTCGAAGGACTGGCTAGATGA 60.092 50.000 3.17 0.00 0.00 2.92
328 330 2.025155 TCGAAGGACTGGCTAGATGAC 58.975 52.381 3.17 0.00 0.00 3.06
329 331 1.751351 CGAAGGACTGGCTAGATGACA 59.249 52.381 3.17 0.00 0.00 3.58
335 337 2.483583 CTGGCTAGATGACAGTCGTC 57.516 55.000 14.22 14.22 46.57 4.20
336 338 1.066303 CTGGCTAGATGACAGTCGTCC 59.934 57.143 17.80 5.36 46.57 4.79
337 339 1.103803 GGCTAGATGACAGTCGTCCA 58.896 55.000 17.80 5.01 41.85 4.02
338 340 1.476891 GGCTAGATGACAGTCGTCCAA 59.523 52.381 17.80 7.11 41.85 3.53
339 341 2.094182 GGCTAGATGACAGTCGTCCAAA 60.094 50.000 17.80 4.85 41.85 3.28
340 342 3.585862 GCTAGATGACAGTCGTCCAAAA 58.414 45.455 17.80 2.63 41.85 2.44
341 343 3.994392 GCTAGATGACAGTCGTCCAAAAA 59.006 43.478 17.80 0.44 41.85 1.94
342 344 4.092091 GCTAGATGACAGTCGTCCAAAAAG 59.908 45.833 17.80 9.71 41.85 2.27
343 345 3.403038 AGATGACAGTCGTCCAAAAAGG 58.597 45.455 17.80 0.00 41.85 3.11
344 346 2.992124 TGACAGTCGTCCAAAAAGGA 57.008 45.000 0.00 0.00 46.75 3.36
359 361 3.744238 AAAGGAATTTTGGGTTGGTCG 57.256 42.857 0.00 0.00 0.00 4.79
360 362 2.668144 AGGAATTTTGGGTTGGTCGA 57.332 45.000 0.00 0.00 0.00 4.20
361 363 3.169512 AGGAATTTTGGGTTGGTCGAT 57.830 42.857 0.00 0.00 0.00 3.59
362 364 3.506398 AGGAATTTTGGGTTGGTCGATT 58.494 40.909 0.00 0.00 0.00 3.34
363 365 3.901222 AGGAATTTTGGGTTGGTCGATTT 59.099 39.130 0.00 0.00 0.00 2.17
364 366 3.993736 GGAATTTTGGGTTGGTCGATTTG 59.006 43.478 0.00 0.00 0.00 2.32
365 367 4.502431 GGAATTTTGGGTTGGTCGATTTGT 60.502 41.667 0.00 0.00 0.00 2.83
366 368 4.681074 ATTTTGGGTTGGTCGATTTGTT 57.319 36.364 0.00 0.00 0.00 2.83
367 369 4.473477 TTTTGGGTTGGTCGATTTGTTT 57.527 36.364 0.00 0.00 0.00 2.83
368 370 4.473477 TTTGGGTTGGTCGATTTGTTTT 57.527 36.364 0.00 0.00 0.00 2.43
369 371 5.593679 TTTGGGTTGGTCGATTTGTTTTA 57.406 34.783 0.00 0.00 0.00 1.52
370 372 5.593679 TTGGGTTGGTCGATTTGTTTTAA 57.406 34.783 0.00 0.00 0.00 1.52
371 373 5.189659 TGGGTTGGTCGATTTGTTTTAAG 57.810 39.130 0.00 0.00 0.00 1.85
372 374 4.645588 TGGGTTGGTCGATTTGTTTTAAGT 59.354 37.500 0.00 0.00 0.00 2.24
373 375 5.217393 GGGTTGGTCGATTTGTTTTAAGTC 58.783 41.667 0.00 0.00 0.00 3.01
374 376 4.907582 GGTTGGTCGATTTGTTTTAAGTCG 59.092 41.667 0.00 0.00 0.00 4.18
375 377 5.504392 GTTGGTCGATTTGTTTTAAGTCGT 58.496 37.500 0.00 0.00 34.24 4.34
376 378 5.738118 TGGTCGATTTGTTTTAAGTCGTT 57.262 34.783 0.00 0.00 34.24 3.85
377 379 5.503498 TGGTCGATTTGTTTTAAGTCGTTG 58.497 37.500 0.00 0.00 34.24 4.10
378 380 4.907582 GGTCGATTTGTTTTAAGTCGTTGG 59.092 41.667 0.00 0.00 34.24 3.77
379 381 5.277442 GGTCGATTTGTTTTAAGTCGTTGGA 60.277 40.000 0.00 0.00 34.24 3.53
380 382 6.368213 GTCGATTTGTTTTAAGTCGTTGGAT 58.632 36.000 0.00 0.00 34.24 3.41
381 383 7.360269 GGTCGATTTGTTTTAAGTCGTTGGATA 60.360 37.037 0.00 0.00 34.24 2.59
382 384 8.011106 GTCGATTTGTTTTAAGTCGTTGGATAA 58.989 33.333 0.00 0.00 34.24 1.75
383 385 8.557864 TCGATTTGTTTTAAGTCGTTGGATAAA 58.442 29.630 0.00 0.00 34.24 1.40
384 386 9.171701 CGATTTGTTTTAAGTCGTTGGATAAAA 57.828 29.630 0.00 0.00 0.00 1.52
404 406 5.622770 AAAAATGAACGGTTAGATCGCTT 57.377 34.783 0.00 0.00 0.00 4.68
405 407 5.622770 AAAATGAACGGTTAGATCGCTTT 57.377 34.783 0.00 0.00 0.00 3.51
406 408 4.859629 AATGAACGGTTAGATCGCTTTC 57.140 40.909 0.00 0.00 0.00 2.62
407 409 3.587797 TGAACGGTTAGATCGCTTTCT 57.412 42.857 0.00 0.00 0.00 2.52
408 410 3.921677 TGAACGGTTAGATCGCTTTCTT 58.078 40.909 0.00 0.00 0.00 2.52
409 411 3.924686 TGAACGGTTAGATCGCTTTCTTC 59.075 43.478 0.00 0.00 0.00 2.87
410 412 3.587797 ACGGTTAGATCGCTTTCTTCA 57.412 42.857 0.00 0.00 0.00 3.02
411 413 3.921677 ACGGTTAGATCGCTTTCTTCAA 58.078 40.909 0.00 0.00 0.00 2.69
412 414 3.678548 ACGGTTAGATCGCTTTCTTCAAC 59.321 43.478 0.00 0.00 0.00 3.18
413 415 3.062234 CGGTTAGATCGCTTTCTTCAACC 59.938 47.826 7.11 7.11 0.00 3.77
414 416 4.254492 GGTTAGATCGCTTTCTTCAACCT 58.746 43.478 8.90 0.00 33.10 3.50
415 417 4.695928 GGTTAGATCGCTTTCTTCAACCTT 59.304 41.667 8.90 0.00 33.10 3.50
416 418 5.163844 GGTTAGATCGCTTTCTTCAACCTTC 60.164 44.000 8.90 0.00 33.10 3.46
417 419 4.008074 AGATCGCTTTCTTCAACCTTCA 57.992 40.909 0.00 0.00 0.00 3.02
418 420 4.583871 AGATCGCTTTCTTCAACCTTCAT 58.416 39.130 0.00 0.00 0.00 2.57
419 421 4.633565 AGATCGCTTTCTTCAACCTTCATC 59.366 41.667 0.00 0.00 0.00 2.92
420 422 3.074412 TCGCTTTCTTCAACCTTCATCC 58.926 45.455 0.00 0.00 0.00 3.51
421 423 3.077359 CGCTTTCTTCAACCTTCATCCT 58.923 45.455 0.00 0.00 0.00 3.24
422 424 3.120060 CGCTTTCTTCAACCTTCATCCTG 60.120 47.826 0.00 0.00 0.00 3.86
423 425 3.192212 GCTTTCTTCAACCTTCATCCTGG 59.808 47.826 0.00 0.00 0.00 4.45
424 426 4.401925 CTTTCTTCAACCTTCATCCTGGT 58.598 43.478 0.00 0.00 38.35 4.00
425 427 3.703001 TCTTCAACCTTCATCCTGGTC 57.297 47.619 0.00 0.00 35.17 4.02
426 428 3.251484 TCTTCAACCTTCATCCTGGTCT 58.749 45.455 0.00 0.00 35.17 3.85
427 429 3.261897 TCTTCAACCTTCATCCTGGTCTC 59.738 47.826 0.00 0.00 35.17 3.36
428 430 2.907892 TCAACCTTCATCCTGGTCTCT 58.092 47.619 0.00 0.00 35.17 3.10
429 431 3.251484 TCAACCTTCATCCTGGTCTCTT 58.749 45.455 0.00 0.00 35.17 2.85
430 432 3.008375 TCAACCTTCATCCTGGTCTCTTG 59.992 47.826 0.00 0.00 35.17 3.02
431 433 2.625639 ACCTTCATCCTGGTCTCTTGT 58.374 47.619 0.00 0.00 29.18 3.16
432 434 2.982488 ACCTTCATCCTGGTCTCTTGTT 59.018 45.455 0.00 0.00 29.18 2.83
433 435 3.008485 ACCTTCATCCTGGTCTCTTGTTC 59.992 47.826 0.00 0.00 29.18 3.18
434 436 3.008375 CCTTCATCCTGGTCTCTTGTTCA 59.992 47.826 0.00 0.00 0.00 3.18
435 437 4.324099 CCTTCATCCTGGTCTCTTGTTCAT 60.324 45.833 0.00 0.00 0.00 2.57
436 438 4.478206 TCATCCTGGTCTCTTGTTCATC 57.522 45.455 0.00 0.00 0.00 2.92
437 439 4.099633 TCATCCTGGTCTCTTGTTCATCT 58.900 43.478 0.00 0.00 0.00 2.90
438 440 4.533707 TCATCCTGGTCTCTTGTTCATCTT 59.466 41.667 0.00 0.00 0.00 2.40
439 441 4.543590 TCCTGGTCTCTTGTTCATCTTC 57.456 45.455 0.00 0.00 0.00 2.87
440 442 4.163427 TCCTGGTCTCTTGTTCATCTTCT 58.837 43.478 0.00 0.00 0.00 2.85
441 443 4.594920 TCCTGGTCTCTTGTTCATCTTCTT 59.405 41.667 0.00 0.00 0.00 2.52
442 444 4.934602 CCTGGTCTCTTGTTCATCTTCTTC 59.065 45.833 0.00 0.00 0.00 2.87
443 445 4.899502 TGGTCTCTTGTTCATCTTCTTCC 58.100 43.478 0.00 0.00 0.00 3.46
444 446 4.594920 TGGTCTCTTGTTCATCTTCTTCCT 59.405 41.667 0.00 0.00 0.00 3.36
445 447 5.175127 GGTCTCTTGTTCATCTTCTTCCTC 58.825 45.833 0.00 0.00 0.00 3.71
446 448 5.279708 GGTCTCTTGTTCATCTTCTTCCTCA 60.280 44.000 0.00 0.00 0.00 3.86
447 449 6.226787 GTCTCTTGTTCATCTTCTTCCTCAA 58.773 40.000 0.00 0.00 0.00 3.02
448 450 6.708054 GTCTCTTGTTCATCTTCTTCCTCAAA 59.292 38.462 0.00 0.00 0.00 2.69
449 451 7.390162 GTCTCTTGTTCATCTTCTTCCTCAAAT 59.610 37.037 0.00 0.00 0.00 2.32
450 452 7.605691 TCTCTTGTTCATCTTCTTCCTCAAATC 59.394 37.037 0.00 0.00 0.00 2.17
451 453 6.369890 TCTTGTTCATCTTCTTCCTCAAATCG 59.630 38.462 0.00 0.00 0.00 3.34
452 454 4.393062 TGTTCATCTTCTTCCTCAAATCGC 59.607 41.667 0.00 0.00 0.00 4.58
453 455 4.478206 TCATCTTCTTCCTCAAATCGCT 57.522 40.909 0.00 0.00 0.00 4.93
454 456 4.836825 TCATCTTCTTCCTCAAATCGCTT 58.163 39.130 0.00 0.00 0.00 4.68
455 457 4.633126 TCATCTTCTTCCTCAAATCGCTTG 59.367 41.667 0.00 0.00 36.25 4.01
456 458 4.271696 TCTTCTTCCTCAAATCGCTTGA 57.728 40.909 0.68 0.68 41.93 3.02
457 459 4.836825 TCTTCTTCCTCAAATCGCTTGAT 58.163 39.130 0.94 0.00 43.20 2.57
458 460 4.633126 TCTTCTTCCTCAAATCGCTTGATG 59.367 41.667 0.94 0.00 43.20 3.07
459 461 3.942829 TCTTCCTCAAATCGCTTGATGT 58.057 40.909 0.94 0.00 43.20 3.06
460 462 5.084818 TCTTCCTCAAATCGCTTGATGTA 57.915 39.130 0.94 0.00 43.20 2.29
461 463 5.674525 TCTTCCTCAAATCGCTTGATGTAT 58.325 37.500 0.94 0.00 43.20 2.29
462 464 5.755375 TCTTCCTCAAATCGCTTGATGTATC 59.245 40.000 0.94 0.00 43.20 2.24
463 465 5.022282 TCCTCAAATCGCTTGATGTATCA 57.978 39.130 0.94 0.00 43.20 2.15
464 466 4.811024 TCCTCAAATCGCTTGATGTATCAC 59.189 41.667 0.00 0.00 43.20 3.06
465 467 4.024556 CCTCAAATCGCTTGATGTATCACC 60.025 45.833 0.00 0.00 43.20 4.02
466 468 3.555547 TCAAATCGCTTGATGTATCACCG 59.444 43.478 0.00 1.59 39.20 4.94
467 469 2.154854 ATCGCTTGATGTATCACCGG 57.845 50.000 0.00 0.00 36.36 5.28
468 470 0.529773 TCGCTTGATGTATCACCGGC 60.530 55.000 0.00 8.15 36.36 6.13
469 471 1.498865 CGCTTGATGTATCACCGGCC 61.499 60.000 0.00 0.00 36.36 6.13
470 472 1.166531 GCTTGATGTATCACCGGCCC 61.167 60.000 0.00 0.00 36.36 5.80
471 473 0.180171 CTTGATGTATCACCGGCCCA 59.820 55.000 0.00 0.00 36.36 5.36
472 474 0.621082 TTGATGTATCACCGGCCCAA 59.379 50.000 0.00 0.00 36.36 4.12
473 475 0.107410 TGATGTATCACCGGCCCAAC 60.107 55.000 0.00 0.00 0.00 3.77
474 476 0.180406 GATGTATCACCGGCCCAACT 59.820 55.000 0.00 0.00 0.00 3.16
475 477 0.107214 ATGTATCACCGGCCCAACTG 60.107 55.000 0.00 0.00 0.00 3.16
476 478 2.112815 GTATCACCGGCCCAACTGC 61.113 63.158 0.00 0.00 0.00 4.40
488 490 2.191908 AACTGCCTGTTGCCGTCA 59.808 55.556 0.00 0.00 36.28 4.35
489 491 2.186826 AACTGCCTGTTGCCGTCAC 61.187 57.895 0.00 0.00 36.28 3.67
490 492 3.357079 CTGCCTGTTGCCGTCACC 61.357 66.667 0.00 0.00 40.16 4.02
491 493 4.947147 TGCCTGTTGCCGTCACCC 62.947 66.667 0.00 0.00 40.16 4.61
549 551 2.201490 CCCTCGGCCATCCCTCTA 59.799 66.667 2.24 0.00 0.00 2.43
550 552 1.459539 CCCTCGGCCATCCCTCTAA 60.460 63.158 2.24 0.00 0.00 2.10
551 553 1.749033 CCTCGGCCATCCCTCTAAC 59.251 63.158 2.24 0.00 0.00 2.34
552 554 1.749033 CTCGGCCATCCCTCTAACC 59.251 63.158 2.24 0.00 0.00 2.85
553 555 1.759459 CTCGGCCATCCCTCTAACCC 61.759 65.000 2.24 0.00 0.00 4.11
554 556 2.819284 CGGCCATCCCTCTAACCCC 61.819 68.421 2.24 0.00 0.00 4.95
555 557 2.819284 GGCCATCCCTCTAACCCCG 61.819 68.421 0.00 0.00 0.00 5.73
556 558 2.819284 GCCATCCCTCTAACCCCGG 61.819 68.421 0.00 0.00 0.00 5.73
557 559 2.819284 CCATCCCTCTAACCCCGGC 61.819 68.421 0.00 0.00 0.00 6.13
558 560 2.842936 ATCCCTCTAACCCCGGCG 60.843 66.667 0.00 0.00 0.00 6.46
559 561 3.384555 ATCCCTCTAACCCCGGCGA 62.385 63.158 9.30 0.00 0.00 5.54
560 562 3.846430 CCCTCTAACCCCGGCGAC 61.846 72.222 9.30 0.00 0.00 5.19
586 588 2.107705 TTTTTCCGGCGAACTTGCA 58.892 47.368 9.30 0.00 36.28 4.08
587 589 0.248702 TTTTTCCGGCGAACTTGCAC 60.249 50.000 9.30 0.00 36.28 4.57
588 590 2.065906 TTTTCCGGCGAACTTGCACC 62.066 55.000 9.30 0.00 36.28 5.01
589 591 3.758973 TTCCGGCGAACTTGCACCA 62.759 57.895 9.30 0.00 36.28 4.17
590 592 3.055719 CCGGCGAACTTGCACCAT 61.056 61.111 9.30 0.00 36.28 3.55
591 593 2.480555 CGGCGAACTTGCACCATC 59.519 61.111 0.00 0.00 36.28 3.51
592 594 2.877691 GGCGAACTTGCACCATCC 59.122 61.111 0.00 0.00 36.28 3.51
593 595 1.971167 GGCGAACTTGCACCATCCA 60.971 57.895 0.00 0.00 36.28 3.41
594 596 1.210155 GCGAACTTGCACCATCCAC 59.790 57.895 0.00 0.00 34.15 4.02
595 597 1.514678 GCGAACTTGCACCATCCACA 61.515 55.000 0.00 0.00 34.15 4.17
596 598 0.238289 CGAACTTGCACCATCCACAC 59.762 55.000 0.00 0.00 0.00 3.82
597 599 0.598065 GAACTTGCACCATCCACACC 59.402 55.000 0.00 0.00 0.00 4.16
598 600 0.827507 AACTTGCACCATCCACACCC 60.828 55.000 0.00 0.00 0.00 4.61
599 601 1.075482 CTTGCACCATCCACACCCT 59.925 57.895 0.00 0.00 0.00 4.34
600 602 0.540365 CTTGCACCATCCACACCCTT 60.540 55.000 0.00 0.00 0.00 3.95
601 603 0.774276 TTGCACCATCCACACCCTTA 59.226 50.000 0.00 0.00 0.00 2.69
602 604 0.774276 TGCACCATCCACACCCTTAA 59.226 50.000 0.00 0.00 0.00 1.85
603 605 1.271871 TGCACCATCCACACCCTTAAG 60.272 52.381 0.00 0.00 0.00 1.85
604 606 1.004277 GCACCATCCACACCCTTAAGA 59.996 52.381 3.36 0.00 0.00 2.10
605 607 2.711542 CACCATCCACACCCTTAAGAC 58.288 52.381 3.36 0.00 0.00 3.01
606 608 2.039746 CACCATCCACACCCTTAAGACA 59.960 50.000 3.36 0.00 0.00 3.41
607 609 2.305927 ACCATCCACACCCTTAAGACAG 59.694 50.000 3.36 0.00 0.00 3.51
608 610 2.571653 CCATCCACACCCTTAAGACAGA 59.428 50.000 3.36 0.00 0.00 3.41
609 611 3.200825 CCATCCACACCCTTAAGACAGAT 59.799 47.826 3.36 0.00 0.00 2.90
610 612 4.408921 CCATCCACACCCTTAAGACAGATA 59.591 45.833 3.36 0.00 0.00 1.98
611 613 5.104527 CCATCCACACCCTTAAGACAGATAA 60.105 44.000 3.36 0.00 0.00 1.75
612 614 6.409695 CCATCCACACCCTTAAGACAGATAAT 60.410 42.308 3.36 0.00 0.00 1.28
613 615 6.636454 TCCACACCCTTAAGACAGATAATT 57.364 37.500 3.36 0.00 0.00 1.40
614 616 6.414732 TCCACACCCTTAAGACAGATAATTG 58.585 40.000 3.36 0.00 0.00 2.32
615 617 5.590259 CCACACCCTTAAGACAGATAATTGG 59.410 44.000 3.36 0.00 0.00 3.16
616 618 5.590259 CACACCCTTAAGACAGATAATTGGG 59.410 44.000 3.36 0.00 38.13 4.12
617 619 5.253096 ACACCCTTAAGACAGATAATTGGGT 59.747 40.000 3.36 0.00 45.24 4.51
618 620 6.187682 CACCCTTAAGACAGATAATTGGGTT 58.812 40.000 3.36 0.00 42.82 4.11
619 621 6.095440 CACCCTTAAGACAGATAATTGGGTTG 59.905 42.308 3.36 0.00 42.82 3.77
620 622 6.187682 CCCTTAAGACAGATAATTGGGTTGT 58.812 40.000 3.36 0.00 0.00 3.32
629 631 2.014010 AATTGGGTTGTCTGCCACAT 57.986 45.000 0.00 0.00 33.90 3.21
677 679 0.598942 TTGCAGACGCGTGCTTCTTA 60.599 50.000 20.70 0.00 44.32 2.10
757 759 3.424962 GGCGAGTGATGCTAAACTGTTTC 60.425 47.826 9.38 0.00 0.00 2.78
1060 1076 1.377333 CGCCCCCAGTTTCTTCTCC 60.377 63.158 0.00 0.00 0.00 3.71
1061 1077 1.842381 CGCCCCCAGTTTCTTCTCCT 61.842 60.000 0.00 0.00 0.00 3.69
1062 1078 0.034960 GCCCCCAGTTTCTTCTCCTC 60.035 60.000 0.00 0.00 0.00 3.71
1063 1079 1.662686 CCCCCAGTTTCTTCTCCTCT 58.337 55.000 0.00 0.00 0.00 3.69
1064 1080 1.988846 CCCCCAGTTTCTTCTCCTCTT 59.011 52.381 0.00 0.00 0.00 2.85
1065 1081 2.026729 CCCCCAGTTTCTTCTCCTCTTC 60.027 54.545 0.00 0.00 0.00 2.87
1066 1082 2.909662 CCCCAGTTTCTTCTCCTCTTCT 59.090 50.000 0.00 0.00 0.00 2.85
1067 1083 3.055458 CCCCAGTTTCTTCTCCTCTTCTC 60.055 52.174 0.00 0.00 0.00 2.87
1566 1594 5.104900 ACTTGTGCTACTATAAGGGAAGGTG 60.105 44.000 0.00 0.00 0.00 4.00
1741 1769 2.434359 GGACAGCCTTTACGCGCT 60.434 61.111 5.73 0.00 35.10 5.92
1820 1848 1.177401 CCTCGGAGTGATCTGACACA 58.823 55.000 4.02 0.00 42.45 3.72
1853 1881 1.308998 CGCCCTTATTACCCTGCTTG 58.691 55.000 0.00 0.00 0.00 4.01
1864 1892 1.839424 CCCTGCTTGAACTAAAGGGG 58.161 55.000 0.00 0.00 43.40 4.79
2358 2389 6.953520 TCAGTTTCATCAGGTGGGAAATATTT 59.046 34.615 0.00 0.00 33.58 1.40
2360 2391 8.748412 CAGTTTCATCAGGTGGGAAATATTTAA 58.252 33.333 0.00 0.00 33.58 1.52
2361 2392 9.320295 AGTTTCATCAGGTGGGAAATATTTAAA 57.680 29.630 0.00 0.00 33.58 1.52
2401 2432 4.391830 GTGTGAAATCCGTGAATAGCTTGA 59.608 41.667 0.00 0.00 0.00 3.02
2416 2447 6.857437 ATAGCTTGAATACTTTGCCCTTTT 57.143 33.333 0.00 0.00 0.00 2.27
2493 2524 8.453238 TTTTAAAACATACCTGACTAAGCACA 57.547 30.769 0.00 0.00 0.00 4.57
2832 2870 4.943705 GTGCCTTCTAATTCATCTGAACCA 59.056 41.667 0.00 0.00 36.80 3.67
3085 3123 7.823745 ACTAATTTACATTGGGGAGCTATTG 57.176 36.000 0.00 0.00 0.00 1.90
3154 3192 3.059884 GTGGGTGTATGATATGTGAGCG 58.940 50.000 0.00 0.00 0.00 5.03
4190 4231 7.856145 ACCTGAAGATACAACATTTCTCATC 57.144 36.000 0.00 0.00 0.00 2.92
4565 4606 9.614792 AATTTTGTTGAGAAGTTACTCAGTACT 57.385 29.630 0.00 0.00 45.63 2.73
4566 4607 8.644318 TTTTGTTGAGAAGTTACTCAGTACTC 57.356 34.615 0.00 0.00 45.63 2.59
4592 4633 0.106708 AGTCGGTGCAGCTTTTCAGA 59.893 50.000 14.92 0.00 0.00 3.27
4629 4670 7.144661 CGTTAGATGCTCATAGTTCTGAAGAT 58.855 38.462 0.00 0.00 0.00 2.40
4748 4790 7.201767 GCTCTCCTTGCAATACATGACTATTTT 60.202 37.037 0.00 0.00 0.00 1.82
4769 4811 4.389576 CGTTTGCGTGCCCTGAGC 62.390 66.667 0.00 0.00 44.14 4.26
4784 4826 1.190178 TGAGCTCTCTCTGGCTTGCA 61.190 55.000 16.19 0.00 40.03 4.08
5106 5151 6.198687 CAAGAAGCGAAAACAACATCTTGTA 58.801 36.000 0.00 0.00 39.88 2.41
5131 5177 3.750501 TTTTAAAGGAGGATCACCCCC 57.249 47.619 0.00 0.00 36.25 5.40
5137 5183 2.041819 AGGATCACCCCCGACTCC 60.042 66.667 0.00 0.00 36.73 3.85
5142 5188 4.096003 CACCCCCGACTCCGCATT 62.096 66.667 0.00 0.00 0.00 3.56
5191 5237 5.327737 AACCAAAGAACCCACCAAGTATA 57.672 39.130 0.00 0.00 0.00 1.47
5241 5287 6.405538 AGTTGAAAAGAAAAGAACATTGCCA 58.594 32.000 0.00 0.00 0.00 4.92
5245 5291 6.822676 TGAAAAGAAAAGAACATTGCCACAAT 59.177 30.769 0.00 0.00 0.00 2.71
5247 5293 5.534207 AGAAAAGAACATTGCCACAATCA 57.466 34.783 0.00 0.00 0.00 2.57
5271 5317 9.871238 TCAACAAAAATAGGACTAGATGACTAC 57.129 33.333 0.00 0.00 0.00 2.73
5288 5553 8.588290 GATGACTACATCTATCCTATTGGACT 57.412 38.462 0.00 0.00 45.33 3.85
5295 5560 7.175797 ACATCTATCCTATTGGACTACGATCA 58.824 38.462 0.00 0.00 46.51 2.92
5320 5585 0.233848 GGTTCACGTGCTACCGTTTG 59.766 55.000 19.44 0.00 39.45 2.93
5336 5601 1.618343 GTTTGCTAATGGTTGCACCCT 59.382 47.619 0.57 0.00 37.50 4.34
5348 5613 3.568430 GGTTGCACCCTTAAGCCATATAC 59.432 47.826 0.00 0.00 30.04 1.47
5349 5614 4.461198 GTTGCACCCTTAAGCCATATACT 58.539 43.478 0.00 0.00 0.00 2.12
5350 5615 4.788925 TGCACCCTTAAGCCATATACTT 57.211 40.909 0.00 0.00 0.00 2.24
5351 5616 5.124036 TGCACCCTTAAGCCATATACTTT 57.876 39.130 0.00 0.00 0.00 2.66
5352 5617 4.887071 TGCACCCTTAAGCCATATACTTTG 59.113 41.667 0.00 0.00 0.00 2.77
5353 5618 4.261614 GCACCCTTAAGCCATATACTTTGC 60.262 45.833 0.00 0.00 0.00 3.68
5354 5619 5.133221 CACCCTTAAGCCATATACTTTGCT 58.867 41.667 0.00 0.00 35.08 3.91
5355 5620 6.296026 CACCCTTAAGCCATATACTTTGCTA 58.704 40.000 0.00 0.00 32.82 3.49
5356 5621 6.770785 CACCCTTAAGCCATATACTTTGCTAA 59.229 38.462 0.00 0.00 32.82 3.09
5357 5622 7.448469 CACCCTTAAGCCATATACTTTGCTAAT 59.552 37.037 0.00 0.00 32.82 1.73
5358 5623 7.448469 ACCCTTAAGCCATATACTTTGCTAATG 59.552 37.037 0.00 0.00 32.82 1.90
5359 5624 7.094205 CCCTTAAGCCATATACTTTGCTAATGG 60.094 40.741 0.00 0.00 40.10 3.16
5360 5625 7.448469 CCTTAAGCCATATACTTTGCTAATGGT 59.552 37.037 0.00 0.00 39.45 3.55
5361 5626 8.760980 TTAAGCCATATACTTTGCTAATGGTT 57.239 30.769 0.00 0.00 39.45 3.67
5362 5627 6.639632 AGCCATATACTTTGCTAATGGTTG 57.360 37.500 0.00 0.00 39.45 3.77
5363 5628 5.010012 AGCCATATACTTTGCTAATGGTTGC 59.990 40.000 0.00 0.00 39.45 4.17
5364 5629 5.221224 GCCATATACTTTGCTAATGGTTGCA 60.221 40.000 0.00 0.00 39.45 4.08
5365 5630 6.208644 CCATATACTTTGCTAATGGTTGCAC 58.791 40.000 0.00 0.00 39.05 4.57
5366 5631 4.718940 ATACTTTGCTAATGGTTGCACC 57.281 40.909 0.00 0.00 39.05 5.01
5367 5632 1.618343 ACTTTGCTAATGGTTGCACCC 59.382 47.619 0.00 0.00 37.50 4.61
5368 5633 1.895131 CTTTGCTAATGGTTGCACCCT 59.105 47.619 0.57 0.00 37.50 4.34
5369 5634 2.008242 TTGCTAATGGTTGCACCCTT 57.992 45.000 0.57 1.82 37.50 3.95
5370 5635 2.889170 TGCTAATGGTTGCACCCTTA 57.111 45.000 0.57 2.88 37.50 2.69
5371 5636 3.162147 TGCTAATGGTTGCACCCTTAA 57.838 42.857 0.57 0.00 37.50 1.85
5372 5637 3.088532 TGCTAATGGTTGCACCCTTAAG 58.911 45.455 0.57 0.00 37.50 1.85
5373 5638 2.159240 GCTAATGGTTGCACCCTTAAGC 60.159 50.000 0.57 3.78 37.50 3.09
5374 5639 1.266178 AATGGTTGCACCCTTAAGCC 58.734 50.000 0.57 0.00 37.50 4.35
5377 5642 1.356059 TGGTTGCACCCTTAAGCCATA 59.644 47.619 0.57 0.00 37.50 2.74
5389 5654 8.157476 CACCCTTAAGCCATATACTTGAGTAAT 58.843 37.037 0.00 0.00 33.76 1.89
5402 5667 5.601662 ACTTGAGTAATGATCATGTACGGG 58.398 41.667 9.46 8.93 34.39 5.28
5403 5668 3.990092 TGAGTAATGATCATGTACGGGC 58.010 45.455 9.46 9.24 0.00 6.13
5427 5692 3.539604 AGCCAATTACTCTGCAGATGAC 58.460 45.455 18.63 4.55 0.00 3.06
5492 5764 4.340617 TCATTTTGACAGTTCCATACCCC 58.659 43.478 0.00 0.00 0.00 4.95
5540 5813 2.165641 TGGCTGAGTAACGACCATGTAG 59.834 50.000 0.00 0.00 0.00 2.74
5610 5884 9.355215 TGATGTTTTGTGTGTTAAAAATACGTT 57.645 25.926 0.00 0.00 0.00 3.99
5682 5964 2.018542 TGCGCCGCTATTTTAGACTT 57.981 45.000 11.67 0.00 0.00 3.01
5700 5982 2.110011 ACTTCACCCCATTTAGCCAAGT 59.890 45.455 0.00 0.00 0.00 3.16
5701 5983 2.507407 TCACCCCATTTAGCCAAGTC 57.493 50.000 0.00 0.00 0.00 3.01
5702 5984 1.005450 TCACCCCATTTAGCCAAGTCC 59.995 52.381 0.00 0.00 0.00 3.85
5703 5985 1.005924 CACCCCATTTAGCCAAGTCCT 59.994 52.381 0.00 0.00 0.00 3.85
5704 5986 2.241176 CACCCCATTTAGCCAAGTCCTA 59.759 50.000 0.00 0.00 0.00 2.94
5722 6414 9.520204 CAAGTCCTAAATAAAATAGCAATGGTG 57.480 33.333 0.00 0.00 0.00 4.17
5752 6447 4.672409 GACTTACATTAAAGGCCACATGC 58.328 43.478 5.01 0.00 40.16 4.06
5794 6489 3.761752 TGGCTAGTGGGCATTTAAGAAAC 59.238 43.478 0.00 0.00 45.79 2.78
5824 6519 5.861727 TGGATCGATTCATCTTGATCACAT 58.138 37.500 1.00 0.00 39.14 3.21
5893 6589 7.979786 ATCCTTAGTCAAGATCACTTCCTTA 57.020 36.000 0.00 0.00 33.70 2.69
5894 6590 7.171630 TCCTTAGTCAAGATCACTTCCTTAC 57.828 40.000 0.00 0.00 33.70 2.34
5915 6611 3.504520 ACGAACAAACCACACAAAGACTT 59.495 39.130 0.00 0.00 0.00 3.01
5916 6612 4.022676 ACGAACAAACCACACAAAGACTTT 60.023 37.500 0.00 0.00 0.00 2.66
5917 6613 4.920927 CGAACAAACCACACAAAGACTTTT 59.079 37.500 0.00 0.00 0.00 2.27
5918 6614 6.087522 CGAACAAACCACACAAAGACTTTTA 58.912 36.000 0.00 0.00 0.00 1.52
5919 6615 6.750039 CGAACAAACCACACAAAGACTTTTAT 59.250 34.615 0.00 0.00 0.00 1.40
5920 6616 7.044314 CGAACAAACCACACAAAGACTTTTATC 60.044 37.037 0.00 0.00 0.00 1.75
6039 6735 2.423577 CCCTGACACCTAAAGTTTCCG 58.576 52.381 0.00 0.00 0.00 4.30
6040 6736 2.038033 CCCTGACACCTAAAGTTTCCGA 59.962 50.000 0.00 0.00 0.00 4.55
6051 6748 7.548075 CACCTAAAGTTTCCGATGTAGTGTATT 59.452 37.037 0.00 0.00 0.00 1.89
6076 6773 3.599343 CTCATCGGAAAGGTTGACATCA 58.401 45.455 0.00 0.00 0.00 3.07
6077 6774 4.194640 CTCATCGGAAAGGTTGACATCAT 58.805 43.478 0.00 0.00 0.00 2.45
6079 6776 3.694043 TCGGAAAGGTTGACATCATCA 57.306 42.857 0.00 0.00 34.65 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.151554 CCTTAAACCCCCATTATACGCC 58.848 50.000 0.00 0.00 0.00 5.68
10 11 3.817084 GACGCCTTAAACCCCCATTATAC 59.183 47.826 0.00 0.00 0.00 1.47
34 35 6.172136 AGCATATCTTGAGCATCTACAACT 57.828 37.500 0.00 0.00 34.92 3.16
65 66 2.109128 TGCTTTCCATAAAGGTGGGTCA 59.891 45.455 0.00 0.00 42.07 4.02
68 69 3.578282 ACTTTGCTTTCCATAAAGGTGGG 59.422 43.478 0.00 0.00 42.07 4.61
89 90 4.127171 TCTTGTCACCTTTAGAGTGCAAC 58.873 43.478 0.00 0.00 35.14 4.17
90 91 4.415881 TCTTGTCACCTTTAGAGTGCAA 57.584 40.909 0.00 0.00 35.14 4.08
91 92 4.202357 ACATCTTGTCACCTTTAGAGTGCA 60.202 41.667 0.00 0.00 35.14 4.57
92 93 4.319177 ACATCTTGTCACCTTTAGAGTGC 58.681 43.478 0.00 0.00 35.14 4.40
93 94 5.180117 CCAACATCTTGTCACCTTTAGAGTG 59.820 44.000 0.00 0.00 36.54 3.51
94 95 5.071788 TCCAACATCTTGTCACCTTTAGAGT 59.928 40.000 0.00 0.00 0.00 3.24
95 96 5.551233 TCCAACATCTTGTCACCTTTAGAG 58.449 41.667 0.00 0.00 0.00 2.43
96 97 5.560722 TCCAACATCTTGTCACCTTTAGA 57.439 39.130 0.00 0.00 0.00 2.10
97 98 7.278868 GTCTATCCAACATCTTGTCACCTTTAG 59.721 40.741 0.00 0.00 0.00 1.85
98 99 7.103641 GTCTATCCAACATCTTGTCACCTTTA 58.896 38.462 0.00 0.00 0.00 1.85
99 100 5.940470 GTCTATCCAACATCTTGTCACCTTT 59.060 40.000 0.00 0.00 0.00 3.11
100 101 5.491982 GTCTATCCAACATCTTGTCACCTT 58.508 41.667 0.00 0.00 0.00 3.50
101 102 4.080863 GGTCTATCCAACATCTTGTCACCT 60.081 45.833 0.00 0.00 35.97 4.00
102 103 4.192317 GGTCTATCCAACATCTTGTCACC 58.808 47.826 0.00 0.00 35.97 4.02
103 104 4.192317 GGGTCTATCCAACATCTTGTCAC 58.808 47.826 0.00 0.00 38.11 3.67
104 105 3.199946 GGGGTCTATCCAACATCTTGTCA 59.800 47.826 0.00 0.00 38.11 3.58
105 106 3.433740 GGGGGTCTATCCAACATCTTGTC 60.434 52.174 0.00 0.00 38.11 3.18
106 107 2.509964 GGGGGTCTATCCAACATCTTGT 59.490 50.000 0.00 0.00 38.11 3.16
107 108 2.780010 AGGGGGTCTATCCAACATCTTG 59.220 50.000 0.00 0.00 38.11 3.02
108 109 3.049344 GAGGGGGTCTATCCAACATCTT 58.951 50.000 0.00 0.00 38.11 2.40
109 110 2.251338 AGAGGGGGTCTATCCAACATCT 59.749 50.000 0.00 0.00 38.11 2.90
110 111 2.370189 CAGAGGGGGTCTATCCAACATC 59.630 54.545 0.00 0.00 38.11 3.06
111 112 2.412591 CAGAGGGGGTCTATCCAACAT 58.587 52.381 0.00 0.00 38.11 2.71
112 113 1.625228 CCAGAGGGGGTCTATCCAACA 60.625 57.143 0.00 0.00 38.11 3.33
113 114 1.132500 CCAGAGGGGGTCTATCCAAC 58.868 60.000 0.00 0.00 38.11 3.77
114 115 0.694444 GCCAGAGGGGGTCTATCCAA 60.694 60.000 0.00 0.00 38.11 3.53
115 116 1.074471 GCCAGAGGGGGTCTATCCA 60.074 63.158 0.00 0.00 38.11 3.41
116 117 3.893324 GCCAGAGGGGGTCTATCC 58.107 66.667 0.00 0.00 37.04 2.59
123 124 2.203549 GACCAGAAAGCCAGAGGGGG 62.204 65.000 0.00 0.00 37.04 5.40
124 125 1.301293 GACCAGAAAGCCAGAGGGG 59.699 63.158 0.00 0.00 40.85 4.79
125 126 0.322008 GTGACCAGAAAGCCAGAGGG 60.322 60.000 0.00 0.00 37.18 4.30
126 127 0.397941 TGTGACCAGAAAGCCAGAGG 59.602 55.000 0.00 0.00 0.00 3.69
127 128 2.149578 CTTGTGACCAGAAAGCCAGAG 58.850 52.381 0.00 0.00 0.00 3.35
128 129 1.815408 GCTTGTGACCAGAAAGCCAGA 60.815 52.381 6.23 0.00 40.32 3.86
129 130 0.595095 GCTTGTGACCAGAAAGCCAG 59.405 55.000 6.23 0.00 40.32 4.85
130 131 2.719376 GCTTGTGACCAGAAAGCCA 58.281 52.632 6.23 0.00 40.32 4.75
132 133 0.595095 CAGGCTTGTGACCAGAAAGC 59.405 55.000 8.19 8.19 44.43 3.51
133 134 2.260844 TCAGGCTTGTGACCAGAAAG 57.739 50.000 0.00 0.00 0.00 2.62
134 135 2.507484 CATCAGGCTTGTGACCAGAAA 58.493 47.619 0.00 0.00 0.00 2.52
135 136 1.271543 CCATCAGGCTTGTGACCAGAA 60.272 52.381 0.00 0.00 0.00 3.02
136 137 0.325933 CCATCAGGCTTGTGACCAGA 59.674 55.000 0.00 0.00 0.00 3.86
137 138 2.864114 CCATCAGGCTTGTGACCAG 58.136 57.895 0.00 0.00 0.00 4.00
148 149 1.748122 GTCACTGCCAGCCATCAGG 60.748 63.158 0.00 0.00 34.76 3.86
149 150 1.002990 TGTCACTGCCAGCCATCAG 60.003 57.895 0.00 0.00 36.45 2.90
150 151 1.002990 CTGTCACTGCCAGCCATCA 60.003 57.895 0.00 0.00 0.00 3.07
151 152 0.743701 CTCTGTCACTGCCAGCCATC 60.744 60.000 0.00 0.00 0.00 3.51
152 153 1.298993 CTCTGTCACTGCCAGCCAT 59.701 57.895 0.00 0.00 0.00 4.40
153 154 2.745698 CTCTGTCACTGCCAGCCA 59.254 61.111 0.00 0.00 0.00 4.75
154 155 2.745492 GCTCTGTCACTGCCAGCC 60.745 66.667 0.00 0.00 0.00 4.85
155 156 2.849120 ATCGCTCTGTCACTGCCAGC 62.849 60.000 0.00 0.00 0.00 4.85
156 157 0.390866 AATCGCTCTGTCACTGCCAG 60.391 55.000 0.00 0.00 0.00 4.85
157 158 0.035317 AAATCGCTCTGTCACTGCCA 59.965 50.000 0.00 0.00 0.00 4.92
158 159 0.723981 GAAATCGCTCTGTCACTGCC 59.276 55.000 0.00 0.00 0.00 4.85
159 160 1.432514 TGAAATCGCTCTGTCACTGC 58.567 50.000 0.00 0.00 0.00 4.40
160 161 5.045872 TCATATGAAATCGCTCTGTCACTG 58.954 41.667 1.98 0.00 0.00 3.66
161 162 5.268118 TCATATGAAATCGCTCTGTCACT 57.732 39.130 1.98 0.00 0.00 3.41
162 163 5.973651 TTCATATGAAATCGCTCTGTCAC 57.026 39.130 15.82 0.00 0.00 3.67
163 164 8.661352 TTTATTCATATGAAATCGCTCTGTCA 57.339 30.769 21.50 0.00 37.61 3.58
164 165 9.374960 GTTTTATTCATATGAAATCGCTCTGTC 57.625 33.333 21.50 2.84 37.61 3.51
165 166 9.113838 AGTTTTATTCATATGAAATCGCTCTGT 57.886 29.630 21.50 5.09 37.61 3.41
166 167 9.591404 GAGTTTTATTCATATGAAATCGCTCTG 57.409 33.333 21.50 0.00 37.61 3.35
167 168 9.553064 AGAGTTTTATTCATATGAAATCGCTCT 57.447 29.630 21.50 22.31 37.61 4.09
205 206 7.595130 AGCAAACGTCCTTTAATCATTTTTCTC 59.405 33.333 0.00 0.00 0.00 2.87
207 208 7.637709 AGCAAACGTCCTTTAATCATTTTTC 57.362 32.000 0.00 0.00 0.00 2.29
209 210 6.799925 CGTAGCAAACGTCCTTTAATCATTTT 59.200 34.615 3.67 0.00 46.72 1.82
213 214 4.914312 CGTAGCAAACGTCCTTTAATCA 57.086 40.909 3.67 0.00 46.72 2.57
235 237 1.062880 TGCGTCAAAACTTTCACGACC 59.937 47.619 2.64 0.00 34.06 4.79
239 241 4.593157 TGTACATGCGTCAAAACTTTCAC 58.407 39.130 0.00 0.00 0.00 3.18
245 247 4.717991 TGCTATTGTACATGCGTCAAAAC 58.282 39.130 0.00 0.00 0.00 2.43
271 273 4.739195 TGTTTGCCCGCATTTTCTATTAC 58.261 39.130 0.00 0.00 0.00 1.89
275 277 3.951775 ATTGTTTGCCCGCATTTTCTA 57.048 38.095 0.00 0.00 0.00 2.10
283 285 5.605564 AAAGAAAATTATTGTTTGCCCGC 57.394 34.783 0.00 0.00 0.00 6.13
285 287 7.383843 TCGAGAAAAGAAAATTATTGTTTGCCC 59.616 33.333 0.00 0.00 0.00 5.36
303 305 3.162666 TCTAGCCAGTCCTTCGAGAAAA 58.837 45.455 0.00 0.00 0.00 2.29
304 306 2.803956 TCTAGCCAGTCCTTCGAGAAA 58.196 47.619 0.00 0.00 0.00 2.52
305 307 2.509166 TCTAGCCAGTCCTTCGAGAA 57.491 50.000 0.00 0.00 0.00 2.87
306 308 2.092375 TCATCTAGCCAGTCCTTCGAGA 60.092 50.000 0.00 0.00 0.00 4.04
307 309 2.034053 GTCATCTAGCCAGTCCTTCGAG 59.966 54.545 0.00 0.00 0.00 4.04
308 310 2.025155 GTCATCTAGCCAGTCCTTCGA 58.975 52.381 0.00 0.00 0.00 3.71
309 311 1.751351 TGTCATCTAGCCAGTCCTTCG 59.249 52.381 0.00 0.00 0.00 3.79
310 312 2.763448 ACTGTCATCTAGCCAGTCCTTC 59.237 50.000 0.00 0.00 34.44 3.46
311 313 2.763448 GACTGTCATCTAGCCAGTCCTT 59.237 50.000 15.20 0.00 45.92 3.36
312 314 2.383855 GACTGTCATCTAGCCAGTCCT 58.616 52.381 15.20 0.00 45.92 3.85
313 315 2.880963 GACTGTCATCTAGCCAGTCC 57.119 55.000 15.20 4.33 45.92 3.85
315 317 1.746220 GACGACTGTCATCTAGCCAGT 59.254 52.381 8.73 0.00 44.82 4.00
316 318 2.483583 GACGACTGTCATCTAGCCAG 57.516 55.000 8.73 0.00 44.82 4.85
323 325 7.947284 AAAATTCCTTTTTGGACGACTGTCATC 60.947 37.037 8.73 1.41 46.14 2.92
324 326 6.183360 AAAATTCCTTTTTGGACGACTGTCAT 60.183 34.615 8.73 0.00 46.14 3.06
325 327 5.126384 AAAATTCCTTTTTGGACGACTGTCA 59.874 36.000 8.73 0.00 46.14 3.58
326 328 4.830826 AATTCCTTTTTGGACGACTGTC 57.169 40.909 0.00 0.00 46.14 3.51
327 329 5.348164 CAAAATTCCTTTTTGGACGACTGT 58.652 37.500 0.00 0.00 46.88 3.55
328 330 5.888412 CAAAATTCCTTTTTGGACGACTG 57.112 39.130 0.00 0.00 46.88 3.51
337 339 4.162509 TCGACCAACCCAAAATTCCTTTTT 59.837 37.500 0.00 0.00 38.05 1.94
338 340 3.707102 TCGACCAACCCAAAATTCCTTTT 59.293 39.130 0.00 0.00 34.90 2.27
339 341 3.301274 TCGACCAACCCAAAATTCCTTT 58.699 40.909 0.00 0.00 0.00 3.11
340 342 2.952116 TCGACCAACCCAAAATTCCTT 58.048 42.857 0.00 0.00 0.00 3.36
341 343 2.668144 TCGACCAACCCAAAATTCCT 57.332 45.000 0.00 0.00 0.00 3.36
342 344 3.953712 AATCGACCAACCCAAAATTCC 57.046 42.857 0.00 0.00 0.00 3.01
343 345 4.627058 ACAAATCGACCAACCCAAAATTC 58.373 39.130 0.00 0.00 0.00 2.17
344 346 4.681074 ACAAATCGACCAACCCAAAATT 57.319 36.364 0.00 0.00 0.00 1.82
345 347 4.681074 AACAAATCGACCAACCCAAAAT 57.319 36.364 0.00 0.00 0.00 1.82
346 348 4.473477 AAACAAATCGACCAACCCAAAA 57.527 36.364 0.00 0.00 0.00 2.44
347 349 4.473477 AAAACAAATCGACCAACCCAAA 57.527 36.364 0.00 0.00 0.00 3.28
348 350 5.127356 ACTTAAAACAAATCGACCAACCCAA 59.873 36.000 0.00 0.00 0.00 4.12
349 351 4.645588 ACTTAAAACAAATCGACCAACCCA 59.354 37.500 0.00 0.00 0.00 4.51
350 352 5.190992 ACTTAAAACAAATCGACCAACCC 57.809 39.130 0.00 0.00 0.00 4.11
351 353 4.907582 CGACTTAAAACAAATCGACCAACC 59.092 41.667 0.00 0.00 34.77 3.77
352 354 5.504392 ACGACTTAAAACAAATCGACCAAC 58.496 37.500 0.00 0.00 36.64 3.77
353 355 5.738118 ACGACTTAAAACAAATCGACCAA 57.262 34.783 0.00 0.00 36.64 3.67
354 356 5.503498 CAACGACTTAAAACAAATCGACCA 58.497 37.500 0.00 0.00 36.64 4.02
355 357 4.907582 CCAACGACTTAAAACAAATCGACC 59.092 41.667 0.00 0.00 36.64 4.79
356 358 5.740406 TCCAACGACTTAAAACAAATCGAC 58.260 37.500 0.00 0.00 36.64 4.20
357 359 5.987777 TCCAACGACTTAAAACAAATCGA 57.012 34.783 0.00 0.00 36.64 3.59
358 360 8.716619 TTTATCCAACGACTTAAAACAAATCG 57.283 30.769 0.00 0.00 38.71 3.34
382 384 5.622770 AAGCGATCTAACCGTTCATTTTT 57.377 34.783 0.00 0.00 0.00 1.94
383 385 5.411669 AGAAAGCGATCTAACCGTTCATTTT 59.588 36.000 0.00 0.00 0.00 1.82
384 386 4.935808 AGAAAGCGATCTAACCGTTCATTT 59.064 37.500 0.00 0.00 0.00 2.32
385 387 4.504858 AGAAAGCGATCTAACCGTTCATT 58.495 39.130 0.00 0.00 0.00 2.57
386 388 4.124851 AGAAAGCGATCTAACCGTTCAT 57.875 40.909 0.00 0.00 0.00 2.57
387 389 3.587797 AGAAAGCGATCTAACCGTTCA 57.412 42.857 0.00 0.00 0.00 3.18
388 390 3.924686 TGAAGAAAGCGATCTAACCGTTC 59.075 43.478 0.00 0.00 0.00 3.95
389 391 3.921677 TGAAGAAAGCGATCTAACCGTT 58.078 40.909 0.00 0.00 0.00 4.44
390 392 3.587797 TGAAGAAAGCGATCTAACCGT 57.412 42.857 0.00 0.00 0.00 4.83
391 393 3.062234 GGTTGAAGAAAGCGATCTAACCG 59.938 47.826 9.37 0.00 31.69 4.44
392 394 4.254492 AGGTTGAAGAAAGCGATCTAACC 58.746 43.478 14.06 14.06 41.32 2.85
393 395 5.408604 TGAAGGTTGAAGAAAGCGATCTAAC 59.591 40.000 0.00 0.00 41.32 2.34
394 396 5.547465 TGAAGGTTGAAGAAAGCGATCTAA 58.453 37.500 0.00 0.00 41.32 2.10
395 397 5.147330 TGAAGGTTGAAGAAAGCGATCTA 57.853 39.130 0.00 0.00 41.32 1.98
396 398 4.008074 TGAAGGTTGAAGAAAGCGATCT 57.992 40.909 0.00 0.00 41.32 2.75
397 399 4.201861 GGATGAAGGTTGAAGAAAGCGATC 60.202 45.833 0.00 0.00 41.32 3.69
398 400 3.691609 GGATGAAGGTTGAAGAAAGCGAT 59.308 43.478 0.00 0.00 41.32 4.58
399 401 3.074412 GGATGAAGGTTGAAGAAAGCGA 58.926 45.455 0.00 0.00 41.32 4.93
400 402 3.077359 AGGATGAAGGTTGAAGAAAGCG 58.923 45.455 0.00 0.00 41.32 4.68
401 403 3.192212 CCAGGATGAAGGTTGAAGAAAGC 59.808 47.826 0.00 0.00 39.69 3.51
402 404 4.401925 ACCAGGATGAAGGTTGAAGAAAG 58.598 43.478 0.00 0.00 39.69 2.62
403 405 4.104738 AGACCAGGATGAAGGTTGAAGAAA 59.895 41.667 0.00 0.00 39.69 2.52
404 406 3.652869 AGACCAGGATGAAGGTTGAAGAA 59.347 43.478 0.00 0.00 39.69 2.52
405 407 3.251484 AGACCAGGATGAAGGTTGAAGA 58.749 45.455 0.00 0.00 39.69 2.87
406 408 3.262915 AGAGACCAGGATGAAGGTTGAAG 59.737 47.826 0.00 0.00 39.69 3.02
407 409 3.251484 AGAGACCAGGATGAAGGTTGAA 58.749 45.455 0.00 0.00 39.69 2.69
408 410 2.907892 AGAGACCAGGATGAAGGTTGA 58.092 47.619 0.00 0.00 39.69 3.18
409 411 3.244700 ACAAGAGACCAGGATGAAGGTTG 60.245 47.826 0.00 0.00 39.69 3.77
410 412 2.982488 ACAAGAGACCAGGATGAAGGTT 59.018 45.455 0.00 0.00 39.69 3.50
411 413 2.625639 ACAAGAGACCAGGATGAAGGT 58.374 47.619 0.00 0.00 39.69 3.50
412 414 3.008375 TGAACAAGAGACCAGGATGAAGG 59.992 47.826 0.00 0.00 39.69 3.46
413 415 4.277515 TGAACAAGAGACCAGGATGAAG 57.722 45.455 0.00 0.00 39.69 3.02
414 416 4.533707 AGATGAACAAGAGACCAGGATGAA 59.466 41.667 0.00 0.00 39.69 2.57
415 417 4.099633 AGATGAACAAGAGACCAGGATGA 58.900 43.478 0.00 0.00 39.69 2.92
416 418 4.484537 AGATGAACAAGAGACCAGGATG 57.515 45.455 0.00 0.00 0.00 3.51
417 419 4.782156 AGAAGATGAACAAGAGACCAGGAT 59.218 41.667 0.00 0.00 0.00 3.24
418 420 4.163427 AGAAGATGAACAAGAGACCAGGA 58.837 43.478 0.00 0.00 0.00 3.86
419 421 4.550076 AGAAGATGAACAAGAGACCAGG 57.450 45.455 0.00 0.00 0.00 4.45
420 422 4.934602 GGAAGAAGATGAACAAGAGACCAG 59.065 45.833 0.00 0.00 0.00 4.00
421 423 4.594920 AGGAAGAAGATGAACAAGAGACCA 59.405 41.667 0.00 0.00 0.00 4.02
422 424 5.159273 AGGAAGAAGATGAACAAGAGACC 57.841 43.478 0.00 0.00 0.00 3.85
423 425 5.788450 TGAGGAAGAAGATGAACAAGAGAC 58.212 41.667 0.00 0.00 0.00 3.36
424 426 6.425210 TTGAGGAAGAAGATGAACAAGAGA 57.575 37.500 0.00 0.00 0.00 3.10
425 427 7.412781 CGATTTGAGGAAGAAGATGAACAAGAG 60.413 40.741 0.00 0.00 0.00 2.85
426 428 6.369890 CGATTTGAGGAAGAAGATGAACAAGA 59.630 38.462 0.00 0.00 0.00 3.02
427 429 6.541086 CGATTTGAGGAAGAAGATGAACAAG 58.459 40.000 0.00 0.00 0.00 3.16
428 430 5.106555 GCGATTTGAGGAAGAAGATGAACAA 60.107 40.000 0.00 0.00 0.00 2.83
429 431 4.393062 GCGATTTGAGGAAGAAGATGAACA 59.607 41.667 0.00 0.00 0.00 3.18
430 432 4.633565 AGCGATTTGAGGAAGAAGATGAAC 59.366 41.667 0.00 0.00 0.00 3.18
431 433 4.836825 AGCGATTTGAGGAAGAAGATGAA 58.163 39.130 0.00 0.00 0.00 2.57
432 434 4.478206 AGCGATTTGAGGAAGAAGATGA 57.522 40.909 0.00 0.00 0.00 2.92
433 435 4.633126 TCAAGCGATTTGAGGAAGAAGATG 59.367 41.667 0.00 0.00 40.82 2.90
434 436 4.836825 TCAAGCGATTTGAGGAAGAAGAT 58.163 39.130 0.00 0.00 40.82 2.40
435 437 4.271696 TCAAGCGATTTGAGGAAGAAGA 57.728 40.909 0.00 0.00 40.82 2.87
445 447 3.303329 CCGGTGATACATCAAGCGATTTG 60.303 47.826 0.00 0.00 38.75 2.32
446 448 2.872245 CCGGTGATACATCAAGCGATTT 59.128 45.455 0.00 0.00 38.75 2.17
447 449 2.483876 CCGGTGATACATCAAGCGATT 58.516 47.619 0.00 0.00 38.75 3.34
448 450 1.873903 GCCGGTGATACATCAAGCGAT 60.874 52.381 1.90 0.00 38.75 4.58
449 451 0.529773 GCCGGTGATACATCAAGCGA 60.530 55.000 1.90 0.00 38.75 4.93
450 452 1.498865 GGCCGGTGATACATCAAGCG 61.499 60.000 1.90 0.88 38.75 4.68
451 453 1.166531 GGGCCGGTGATACATCAAGC 61.167 60.000 1.90 0.00 38.75 4.01
452 454 0.180171 TGGGCCGGTGATACATCAAG 59.820 55.000 1.90 0.00 38.75 3.02
453 455 0.621082 TTGGGCCGGTGATACATCAA 59.379 50.000 1.90 0.00 38.75 2.57
454 456 0.107410 GTTGGGCCGGTGATACATCA 60.107 55.000 1.90 0.00 0.00 3.07
455 457 0.180406 AGTTGGGCCGGTGATACATC 59.820 55.000 1.90 0.00 0.00 3.06
456 458 0.107214 CAGTTGGGCCGGTGATACAT 60.107 55.000 1.90 0.00 0.00 2.29
457 459 1.298340 CAGTTGGGCCGGTGATACA 59.702 57.895 1.90 0.00 0.00 2.29
458 460 2.112815 GCAGTTGGGCCGGTGATAC 61.113 63.158 1.90 0.00 0.00 2.24
459 461 2.270850 GCAGTTGGGCCGGTGATA 59.729 61.111 1.90 0.00 0.00 2.15
460 462 4.740822 GGCAGTTGGGCCGGTGAT 62.741 66.667 1.90 0.00 45.40 3.06
532 534 1.459539 TTAGAGGGATGGCCGAGGG 60.460 63.158 0.00 0.00 33.83 4.30
533 535 1.749033 GTTAGAGGGATGGCCGAGG 59.251 63.158 0.00 0.00 33.83 4.63
534 536 1.749033 GGTTAGAGGGATGGCCGAG 59.251 63.158 0.00 0.00 33.83 4.63
535 537 1.764854 GGGTTAGAGGGATGGCCGA 60.765 63.158 0.00 0.00 33.83 5.54
536 538 2.819284 GGGGTTAGAGGGATGGCCG 61.819 68.421 0.00 0.00 33.83 6.13
537 539 2.819284 CGGGGTTAGAGGGATGGCC 61.819 68.421 0.00 0.00 0.00 5.36
538 540 2.819284 CCGGGGTTAGAGGGATGGC 61.819 68.421 0.00 0.00 0.00 4.40
539 541 2.819284 GCCGGGGTTAGAGGGATGG 61.819 68.421 2.18 0.00 0.00 3.51
540 542 2.829592 GCCGGGGTTAGAGGGATG 59.170 66.667 2.18 0.00 0.00 3.51
541 543 2.842936 CGCCGGGGTTAGAGGGAT 60.843 66.667 11.01 0.00 0.00 3.85
542 544 4.064768 TCGCCGGGGTTAGAGGGA 62.065 66.667 19.13 0.00 0.00 4.20
543 545 3.846430 GTCGCCGGGGTTAGAGGG 61.846 72.222 19.13 0.00 0.00 4.30
544 546 4.203076 CGTCGCCGGGGTTAGAGG 62.203 72.222 19.13 0.62 0.00 3.69
545 547 3.136123 TCGTCGCCGGGGTTAGAG 61.136 66.667 19.13 6.74 33.95 2.43
546 548 3.443045 GTCGTCGCCGGGGTTAGA 61.443 66.667 19.13 13.02 33.95 2.10
547 549 3.285523 TTGTCGTCGCCGGGGTTAG 62.286 63.158 19.13 10.90 33.95 2.34
548 550 3.285523 CTTGTCGTCGCCGGGGTTA 62.286 63.158 19.13 2.21 33.95 2.85
549 551 4.675029 CTTGTCGTCGCCGGGGTT 62.675 66.667 19.13 0.00 33.95 4.11
551 553 4.675029 AACTTGTCGTCGCCGGGG 62.675 66.667 13.31 13.31 33.95 5.73
552 554 1.778027 AAAAACTTGTCGTCGCCGGG 61.778 55.000 2.18 0.00 33.95 5.73
553 555 1.644913 AAAAACTTGTCGTCGCCGG 59.355 52.632 0.00 0.00 33.95 6.13
568 570 0.248702 GTGCAAGTTCGCCGGAAAAA 60.249 50.000 5.05 0.00 33.05 1.94
569 571 1.357334 GTGCAAGTTCGCCGGAAAA 59.643 52.632 5.05 0.00 33.05 2.29
570 572 2.548295 GGTGCAAGTTCGCCGGAAA 61.548 57.895 5.05 0.00 33.05 3.13
571 573 2.975799 GGTGCAAGTTCGCCGGAA 60.976 61.111 5.05 0.00 0.00 4.30
572 574 3.545124 ATGGTGCAAGTTCGCCGGA 62.545 57.895 5.05 0.00 39.42 5.14
573 575 3.039202 GATGGTGCAAGTTCGCCGG 62.039 63.158 0.00 0.00 39.42 6.13
574 576 2.480555 GATGGTGCAAGTTCGCCG 59.519 61.111 0.00 0.00 39.42 6.46
575 577 1.971167 TGGATGGTGCAAGTTCGCC 60.971 57.895 0.00 0.00 37.15 5.54
576 578 1.210155 GTGGATGGTGCAAGTTCGC 59.790 57.895 0.00 0.00 0.00 4.70
577 579 0.238289 GTGTGGATGGTGCAAGTTCG 59.762 55.000 0.00 0.00 0.00 3.95
578 580 0.598065 GGTGTGGATGGTGCAAGTTC 59.402 55.000 0.00 0.00 0.00 3.01
579 581 0.827507 GGGTGTGGATGGTGCAAGTT 60.828 55.000 0.00 0.00 0.00 2.66
580 582 1.228552 GGGTGTGGATGGTGCAAGT 60.229 57.895 0.00 0.00 0.00 3.16
581 583 0.540365 AAGGGTGTGGATGGTGCAAG 60.540 55.000 0.00 0.00 0.00 4.01
582 584 0.774276 TAAGGGTGTGGATGGTGCAA 59.226 50.000 0.00 0.00 0.00 4.08
583 585 0.774276 TTAAGGGTGTGGATGGTGCA 59.226 50.000 0.00 0.00 0.00 4.57
584 586 1.004277 TCTTAAGGGTGTGGATGGTGC 59.996 52.381 1.85 0.00 0.00 5.01
585 587 2.039746 TGTCTTAAGGGTGTGGATGGTG 59.960 50.000 1.85 0.00 0.00 4.17
586 588 2.305927 CTGTCTTAAGGGTGTGGATGGT 59.694 50.000 1.85 0.00 0.00 3.55
587 589 2.571653 TCTGTCTTAAGGGTGTGGATGG 59.428 50.000 1.85 0.00 0.00 3.51
588 590 3.981071 TCTGTCTTAAGGGTGTGGATG 57.019 47.619 1.85 0.00 0.00 3.51
589 591 6.831664 ATTATCTGTCTTAAGGGTGTGGAT 57.168 37.500 1.85 2.04 0.00 3.41
590 592 6.414732 CAATTATCTGTCTTAAGGGTGTGGA 58.585 40.000 1.85 0.00 0.00 4.02
591 593 5.590259 CCAATTATCTGTCTTAAGGGTGTGG 59.410 44.000 1.85 0.00 0.00 4.17
592 594 5.590259 CCCAATTATCTGTCTTAAGGGTGTG 59.410 44.000 1.85 0.00 0.00 3.82
593 595 5.253096 ACCCAATTATCTGTCTTAAGGGTGT 59.747 40.000 1.85 0.00 44.84 4.16
594 596 5.755849 ACCCAATTATCTGTCTTAAGGGTG 58.244 41.667 1.85 0.00 44.84 4.61
596 598 6.187682 ACAACCCAATTATCTGTCTTAAGGG 58.812 40.000 1.85 0.00 39.66 3.95
597 599 7.066284 CAGACAACCCAATTATCTGTCTTAAGG 59.934 40.741 1.85 0.00 43.14 2.69
598 600 7.414540 GCAGACAACCCAATTATCTGTCTTAAG 60.415 40.741 0.00 0.00 43.14 1.85
599 601 6.374333 GCAGACAACCCAATTATCTGTCTTAA 59.626 38.462 8.25 0.00 43.14 1.85
600 602 5.880332 GCAGACAACCCAATTATCTGTCTTA 59.120 40.000 8.25 0.00 43.14 2.10
601 603 4.702131 GCAGACAACCCAATTATCTGTCTT 59.298 41.667 8.25 0.00 43.14 3.01
602 604 4.265073 GCAGACAACCCAATTATCTGTCT 58.735 43.478 0.00 6.05 45.81 3.41
603 605 3.378427 GGCAGACAACCCAATTATCTGTC 59.622 47.826 0.00 0.00 39.21 3.51
604 606 3.245229 TGGCAGACAACCCAATTATCTGT 60.245 43.478 0.00 0.00 39.21 3.41
605 607 3.129287 GTGGCAGACAACCCAATTATCTG 59.871 47.826 0.00 0.00 39.84 2.90
606 608 3.245229 TGTGGCAGACAACCCAATTATCT 60.245 43.478 0.00 0.00 31.90 1.98
607 609 3.088532 TGTGGCAGACAACCCAATTATC 58.911 45.455 0.00 0.00 31.90 1.75
608 610 3.168035 TGTGGCAGACAACCCAATTAT 57.832 42.857 0.00 0.00 31.90 1.28
609 611 2.666272 TGTGGCAGACAACCCAATTA 57.334 45.000 0.00 0.00 31.90 1.40
610 612 2.014010 ATGTGGCAGACAACCCAATT 57.986 45.000 0.00 0.00 38.36 2.32
611 613 2.014010 AATGTGGCAGACAACCCAAT 57.986 45.000 0.00 0.00 38.36 3.16
612 614 2.666272 TAATGTGGCAGACAACCCAA 57.334 45.000 0.00 0.00 38.36 4.12
613 615 2.107378 TCTTAATGTGGCAGACAACCCA 59.893 45.455 0.00 0.00 38.36 4.51
614 616 2.790433 TCTTAATGTGGCAGACAACCC 58.210 47.619 0.00 0.00 38.36 4.11
615 617 5.294552 GTCTATCTTAATGTGGCAGACAACC 59.705 44.000 0.00 0.00 38.36 3.77
616 618 5.005779 CGTCTATCTTAATGTGGCAGACAAC 59.994 44.000 0.00 0.00 38.36 3.32
617 619 5.109210 CGTCTATCTTAATGTGGCAGACAA 58.891 41.667 0.00 0.00 38.36 3.18
618 620 4.682787 CGTCTATCTTAATGTGGCAGACA 58.317 43.478 0.00 0.00 39.53 3.41
619 621 3.491267 GCGTCTATCTTAATGTGGCAGAC 59.509 47.826 0.00 0.00 0.00 3.51
620 622 3.132111 TGCGTCTATCTTAATGTGGCAGA 59.868 43.478 0.00 0.00 0.00 4.26
624 626 4.302455 CCTCTGCGTCTATCTTAATGTGG 58.698 47.826 0.00 0.00 0.00 4.17
659 661 1.006688 TAAGAAGCACGCGTCTGCA 60.007 52.632 21.73 0.00 42.97 4.41
662 664 1.669211 GGAAGTAAGAAGCACGCGTCT 60.669 52.381 9.86 7.13 36.39 4.18
677 679 3.382832 CAGCCGACGGAGGGAAGT 61.383 66.667 20.50 0.00 0.00 3.01
863 866 1.205460 TTTCCTACCACCTGGGGCTC 61.205 60.000 0.00 0.00 42.91 4.70
938 941 3.017581 GGCTGATGGGTGGGGTCT 61.018 66.667 0.00 0.00 0.00 3.85
949 952 2.548178 CTGAAACACAGCGGCTGAT 58.452 52.632 34.70 19.70 39.86 2.90
958 961 2.435372 AGTCAAAGGGCTGAAACACA 57.565 45.000 0.00 0.00 0.00 3.72
1060 1076 1.063972 CAGCGCGGAGAGAGAAGAG 59.936 63.158 8.83 0.00 0.00 2.85
1061 1077 3.057547 GCAGCGCGGAGAGAGAAGA 62.058 63.158 13.03 0.00 0.00 2.87
1062 1078 2.581953 GCAGCGCGGAGAGAGAAG 60.582 66.667 13.03 0.00 0.00 2.85
1063 1079 4.135153 GGCAGCGCGGAGAGAGAA 62.135 66.667 13.03 0.00 0.00 2.87
1137 1153 4.129148 ATTTGGAGGGAGGCCGGC 62.129 66.667 21.18 21.18 0.00 6.13
1138 1154 2.193248 GATTTGGAGGGAGGCCGG 59.807 66.667 0.00 0.00 0.00 6.13
1139 1155 2.193248 GGATTTGGAGGGAGGCCG 59.807 66.667 0.00 0.00 0.00 6.13
1140 1156 1.342672 TACGGATTTGGAGGGAGGCC 61.343 60.000 0.00 0.00 0.00 5.19
1141 1157 0.179054 GTACGGATTTGGAGGGAGGC 60.179 60.000 0.00 0.00 0.00 4.70
1142 1158 0.104304 CGTACGGATTTGGAGGGAGG 59.896 60.000 7.57 0.00 0.00 4.30
1143 1159 0.529992 GCGTACGGATTTGGAGGGAG 60.530 60.000 18.39 0.00 0.00 4.30
1144 1160 1.518774 GCGTACGGATTTGGAGGGA 59.481 57.895 18.39 0.00 0.00 4.20
1145 1161 1.523032 GGCGTACGGATTTGGAGGG 60.523 63.158 18.39 0.00 0.00 4.30
1217 1233 0.321653 AGGGCTTTCAGCTTACCACG 60.322 55.000 0.00 0.00 41.99 4.94
1227 1243 0.180406 GAGCGGGATTAGGGCTTTCA 59.820 55.000 0.00 0.00 37.10 2.69
1242 1258 2.691674 GAATCAGGCGGGAGAGAGCG 62.692 65.000 0.00 0.00 0.00 5.03
1566 1594 0.744414 TAGGCACTTTGGCAGATCGC 60.744 55.000 2.29 1.55 46.46 4.58
1769 1797 5.411361 CGTCACCTATCCATCACAAGAAAAA 59.589 40.000 0.00 0.00 0.00 1.94
1820 1848 1.435256 AGGGCGCCTGTATCCTTTAT 58.565 50.000 28.56 0.00 29.57 1.40
1853 1881 2.607038 CGCTTTGTTGCCCCTTTAGTTC 60.607 50.000 0.00 0.00 0.00 3.01
1886 1914 3.368948 GGGTTTTCCAGCTCAAAACAACA 60.369 43.478 23.03 0.00 42.95 3.33
2067 2095 6.620877 TTTACACCACAACTCAGGATAGAT 57.379 37.500 0.00 0.00 0.00 1.98
2416 2447 6.097554 TGAACAGCCCTTCTATTTGTCAAAAA 59.902 34.615 1.31 0.00 0.00 1.94
2493 2524 7.256691 GGTGTTCATATCCAACATATAGGAGGT 60.257 40.741 0.00 0.00 37.34 3.85
2559 2590 8.638873 TCATATGGAATGTAGTAACAACTCGAT 58.361 33.333 2.13 0.00 39.58 3.59
2601 2632 3.067833 CCGTTTTGTGTGGTTGGTTTTT 58.932 40.909 0.00 0.00 0.00 1.94
2832 2870 1.608717 GCCTGTCGGACCTGTCAGAT 61.609 60.000 5.55 0.00 36.30 2.90
3062 3100 6.681777 GCAATAGCTCCCCAATGTAAATTAG 58.318 40.000 0.00 0.00 37.91 1.73
3154 3192 5.351740 GTGGTATCAAAAGTGCTAGAGAACC 59.648 44.000 0.00 0.00 0.00 3.62
3753 3793 5.630121 AGTTGTATTCCCAATGAACACTCA 58.370 37.500 0.00 0.00 35.31 3.41
4190 4231 7.428826 ACAAGGAGCTGAAAATTTACAAGAAG 58.571 34.615 0.00 0.00 0.00 2.85
4564 4605 0.457851 CTGCACCGACTAGGAAGGAG 59.542 60.000 7.30 1.42 45.00 3.69
4565 4606 1.605058 GCTGCACCGACTAGGAAGGA 61.605 60.000 7.30 0.00 45.00 3.36
4566 4607 1.153549 GCTGCACCGACTAGGAAGG 60.154 63.158 0.00 0.00 45.00 3.46
4592 4633 3.562557 AGCATCTAACGTTTCACGGTTTT 59.437 39.130 5.91 0.00 39.21 2.43
4605 4646 8.885494 AATCTTCAGAACTATGAGCATCTAAC 57.115 34.615 0.00 0.00 34.92 2.34
4635 4676 5.047847 GTCAGCCTAGCACAAATATAACGA 58.952 41.667 0.00 0.00 0.00 3.85
4636 4677 4.808895 TGTCAGCCTAGCACAAATATAACG 59.191 41.667 0.00 0.00 0.00 3.18
4769 4811 1.025647 GCCTTGCAAGCCAGAGAGAG 61.026 60.000 21.43 5.11 0.00 3.20
4784 4826 0.475044 TGTTTTACTCCCGTGGCCTT 59.525 50.000 3.32 0.00 0.00 4.35
4839 4881 4.298332 GTCGCAATTTGTCCACATTTCTT 58.702 39.130 0.00 0.00 0.00 2.52
5049 5094 1.753073 GCAATCAATGGGTCCTCTTGG 59.247 52.381 4.72 0.00 0.00 3.61
5058 5103 1.066716 CCAACAGGTGCAATCAATGGG 60.067 52.381 0.00 0.00 0.00 4.00
5125 5171 2.246761 TTAATGCGGAGTCGGGGGTG 62.247 60.000 0.00 0.00 36.79 4.61
5131 5177 3.291585 GCATCATTTTAATGCGGAGTCG 58.708 45.455 0.00 0.00 40.05 4.18
5142 5188 9.999660 AATAATATGGTTGCATGCATCATTTTA 57.000 25.926 29.45 28.54 0.00 1.52
5191 5237 4.707030 TTGAGTTCACGTATCGTACCAT 57.293 40.909 0.00 0.00 38.32 3.55
5241 5287 9.739276 TCATCTAGTCCTATTTTTGTTGATTGT 57.261 29.630 0.00 0.00 0.00 2.71
5245 5291 9.871238 GTAGTCATCTAGTCCTATTTTTGTTGA 57.129 33.333 0.00 0.00 0.00 3.18
5275 5321 7.065923 CGATCTTGATCGTAGTCCAATAGGATA 59.934 40.741 20.80 0.00 41.52 2.59
5276 5322 6.127869 CGATCTTGATCGTAGTCCAATAGGAT 60.128 42.308 20.80 0.00 41.52 3.24
5278 5324 5.394802 CGATCTTGATCGTAGTCCAATAGG 58.605 45.833 20.80 0.00 39.07 2.57
5287 5552 3.036633 CGTGAACCGATCTTGATCGTAG 58.963 50.000 25.04 16.18 42.07 3.51
5288 5553 2.421073 ACGTGAACCGATCTTGATCGTA 59.579 45.455 25.04 10.70 42.07 3.43
5295 5560 1.403780 GGTAGCACGTGAACCGATCTT 60.404 52.381 22.23 0.00 40.70 2.40
5336 5601 8.629158 CAACCATTAGCAAAGTATATGGCTTAA 58.371 33.333 0.00 0.00 39.46 1.85
5359 5624 4.461198 AGTATATGGCTTAAGGGTGCAAC 58.539 43.478 4.29 0.00 0.00 4.17
5360 5625 4.788925 AGTATATGGCTTAAGGGTGCAA 57.211 40.909 4.29 0.00 0.00 4.08
5361 5626 4.165180 TCAAGTATATGGCTTAAGGGTGCA 59.835 41.667 4.29 0.00 0.00 4.57
5362 5627 4.714632 TCAAGTATATGGCTTAAGGGTGC 58.285 43.478 4.29 0.00 0.00 5.01
5363 5628 5.930135 ACTCAAGTATATGGCTTAAGGGTG 58.070 41.667 4.29 0.00 0.00 4.61
5364 5629 7.685849 TTACTCAAGTATATGGCTTAAGGGT 57.314 36.000 4.29 0.00 0.00 4.34
5365 5630 8.375506 TCATTACTCAAGTATATGGCTTAAGGG 58.624 37.037 4.29 0.00 0.00 3.95
5366 5631 9.950496 ATCATTACTCAAGTATATGGCTTAAGG 57.050 33.333 4.29 0.00 0.00 2.69
5370 5635 9.445878 CATGATCATTACTCAAGTATATGGCTT 57.554 33.333 5.16 0.00 0.00 4.35
5371 5636 8.600668 ACATGATCATTACTCAAGTATATGGCT 58.399 33.333 5.16 0.00 0.00 4.75
5372 5637 8.783833 ACATGATCATTACTCAAGTATATGGC 57.216 34.615 5.16 0.00 0.00 4.40
5377 5642 7.378966 CCCGTACATGATCATTACTCAAGTAT 58.621 38.462 5.16 0.00 31.73 2.12
5389 5654 0.679505 GCTAGGCCCGTACATGATCA 59.320 55.000 0.00 0.00 0.00 2.92
5402 5667 2.158900 TCTGCAGAGTAATTGGCTAGGC 60.159 50.000 13.74 9.85 0.00 3.93
5403 5668 3.827008 TCTGCAGAGTAATTGGCTAGG 57.173 47.619 13.74 0.00 0.00 3.02
5420 5685 5.524646 ACAATTTTGTTTTGCAGGTCATCTG 59.475 36.000 0.00 0.00 41.58 2.90
5427 5692 5.738118 ACATCACAATTTTGTTTTGCAGG 57.262 34.783 0.00 0.00 39.91 4.85
5453 5723 9.185192 GTCAAAATGAGGTGATTTTTAACAGAG 57.815 33.333 0.00 0.00 34.05 3.35
5682 5964 1.005450 GGACTTGGCTAAATGGGGTGA 59.995 52.381 0.00 0.00 0.00 4.02
5701 5983 9.965824 CCTAACACCATTGCTATTTTATTTAGG 57.034 33.333 0.00 0.00 0.00 2.69
5704 5986 8.695456 CCTCCTAACACCATTGCTATTTTATTT 58.305 33.333 0.00 0.00 0.00 1.40
5722 6414 5.821470 GGCCTTTAATGTAAGTCCTCCTAAC 59.179 44.000 0.00 0.00 0.00 2.34
5752 6447 1.135315 GCTACTGTGGCGCACATTG 59.865 57.895 10.83 3.87 43.71 2.82
5788 6483 5.939883 TGAATCGATCCAACATCTGTTTCTT 59.060 36.000 0.00 0.00 35.83 2.52
5794 6489 5.756833 TCAAGATGAATCGATCCAACATCTG 59.243 40.000 24.10 19.78 44.15 2.90
5824 6519 5.289083 AGGGTAGTAAACGGTGTTGTTTA 57.711 39.130 0.00 0.00 41.92 2.01
5893 6589 3.078837 AGTCTTTGTGTGGTTTGTTCGT 58.921 40.909 0.00 0.00 0.00 3.85
5894 6590 3.757745 AGTCTTTGTGTGGTTTGTTCG 57.242 42.857 0.00 0.00 0.00 3.95
5937 6633 7.556275 AGTCACTTCACACTTGGAAAATTAAGA 59.444 33.333 0.00 0.00 0.00 2.10
6039 6735 4.449068 CCGATGAGCCAAATACACTACATC 59.551 45.833 0.00 0.00 0.00 3.06
6040 6736 4.100963 TCCGATGAGCCAAATACACTACAT 59.899 41.667 0.00 0.00 0.00 2.29
6051 6748 1.073125 TCAACCTTTCCGATGAGCCAA 59.927 47.619 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.