Multiple sequence alignment - TraesCS4D01G179500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G179500 chr4D 100.000 8434 0 0 1 8434 312556233 312564666 0.000000e+00 15575.0
1 TraesCS4D01G179500 chr4D 85.575 513 45 10 2074 2586 66649525 66650008 2.100000e-140 510.0
2 TraesCS4D01G179500 chr4D 89.888 267 21 3 2610 2874 66650590 66650852 1.050000e-88 339.0
3 TraesCS4D01G179500 chr4B 96.290 4043 81 14 1 3995 389104175 389108196 0.000000e+00 6571.0
4 TraesCS4D01G179500 chr4B 96.836 1833 36 12 4073 5897 389108191 389110009 0.000000e+00 3044.0
5 TraesCS4D01G179500 chr4B 92.733 1789 53 23 6631 8376 389112795 389114549 0.000000e+00 2512.0
6 TraesCS4D01G179500 chr4B 95.289 743 24 2 5897 6637 389110044 389110777 0.000000e+00 1168.0
7 TraesCS4D01G179500 chr4B 83.196 607 69 11 2065 2670 97446813 97447387 7.500000e-145 525.0
8 TraesCS4D01G179500 chr4B 88.208 212 20 3 2665 2874 97459440 97459648 1.820000e-61 248.0
9 TraesCS4D01G179500 chr4B 93.443 61 2 2 8376 8434 389114575 389114635 1.170000e-13 89.8
10 TraesCS4D01G179500 chr4A 94.511 2168 50 13 307 2468 163931437 163929333 0.000000e+00 3280.0
11 TraesCS4D01G179500 chr4A 97.328 1834 39 9 4073 5900 163922426 163920597 0.000000e+00 3107.0
12 TraesCS4D01G179500 chr4A 93.241 1805 67 11 5896 7675 163920566 163918792 0.000000e+00 2606.0
13 TraesCS4D01G179500 chr4A 95.108 1574 28 7 2464 3995 163923987 163922421 0.000000e+00 2435.0
14 TraesCS4D01G179500 chr4A 89.875 721 36 12 7731 8434 163918491 163917791 0.000000e+00 893.0
15 TraesCS4D01G179500 chr4A 97.386 306 7 1 1 305 163933105 163932800 3.490000e-143 520.0
16 TraesCS4D01G179500 chr7D 85.022 227 24 5 5062 5280 316386794 316387018 1.100000e-53 222.0
17 TraesCS4D01G179500 chr7D 90.816 98 8 1 3988 4085 243706971 243707067 6.870000e-26 130.0
18 TraesCS4D01G179500 chr5D 98.765 81 1 0 7607 7687 521846310 521846230 2.450000e-30 145.0
19 TraesCS4D01G179500 chr5D 93.333 90 6 0 3988 4077 52675431 52675342 5.310000e-27 134.0
20 TraesCS4D01G179500 chr5D 90.099 101 8 2 3977 4077 268385417 268385319 6.870000e-26 130.0
21 TraesCS4D01G179500 chr5B 95.604 91 3 1 7597 7686 658145790 658145700 2.450000e-30 145.0
22 TraesCS4D01G179500 chr7A 98.750 80 1 0 7607 7686 618084944 618084865 8.820000e-30 143.0
23 TraesCS4D01G179500 chr7A 90.625 96 7 2 3992 4087 50004309 50004216 8.890000e-25 126.0
24 TraesCS4D01G179500 chr5A 92.157 102 6 2 7587 7688 650138210 650138111 8.820000e-30 143.0
25 TraesCS4D01G179500 chr5A 90.625 96 8 1 3982 4077 326533285 326533379 8.890000e-25 126.0
26 TraesCS4D01G179500 chr3D 98.750 80 1 0 7607 7686 3302238 3302159 8.820000e-30 143.0
27 TraesCS4D01G179500 chr3B 98.750 80 1 0 7607 7686 479988668 479988589 8.820000e-30 143.0
28 TraesCS4D01G179500 chr3B 98.750 80 1 0 7607 7686 606655559 606655480 8.820000e-30 143.0
29 TraesCS4D01G179500 chr6D 93.333 90 6 0 3988 4077 339469463 339469374 5.310000e-27 134.0
30 TraesCS4D01G179500 chr6D 90.816 98 9 0 3984 4081 29740989 29741086 1.910000e-26 132.0
31 TraesCS4D01G179500 chr2D 93.333 90 6 0 3988 4077 188966997 188966908 5.310000e-27 134.0
32 TraesCS4D01G179500 chr2D 90.722 97 8 1 3989 4085 478048610 478048515 2.470000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G179500 chr4D 312556233 312564666 8433 False 15575.00 15575 100.0000 1 8434 1 chr4D.!!$F1 8433
1 TraesCS4D01G179500 chr4D 66649525 66650852 1327 False 424.50 510 87.7315 2074 2874 2 chr4D.!!$F2 800
2 TraesCS4D01G179500 chr4B 389104175 389114635 10460 False 2676.96 6571 94.9182 1 8434 5 chr4B.!!$F3 8433
3 TraesCS4D01G179500 chr4B 97446813 97447387 574 False 525.00 525 83.1960 2065 2670 1 chr4B.!!$F1 605
4 TraesCS4D01G179500 chr4A 163917791 163923987 6196 True 2260.25 3107 93.8880 2464 8434 4 chr4A.!!$R1 5970
5 TraesCS4D01G179500 chr4A 163929333 163933105 3772 True 1900.00 3280 95.9485 1 2468 2 chr4A.!!$R2 2467

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 1766 0.108424 GACAGCTTCTCATGTCGGCT 60.108 55.000 0.0 0.0 36.76 5.52 F
921 2293 4.458989 TGTCCATTGTAACTTTGATGCTCC 59.541 41.667 0.0 0.0 0.00 4.70 F
1807 3182 3.550842 GCTCGTCATTTTGGCACTTCTTT 60.551 43.478 0.0 0.0 0.00 2.52 F
2384 3761 1.402787 GTTTCTGGGGCATGGTATGG 58.597 55.000 0.0 0.0 0.00 2.74 F
3643 5629 6.381801 TCTTTCGATCATTTTCCTTTTCAGC 58.618 36.000 0.0 0.0 0.00 4.26 F
4008 5994 0.113776 AGTACTTCCTCCGTCCCACA 59.886 55.000 0.0 0.0 0.00 4.17 F
4011 5997 0.324943 ACTTCCTCCGTCCCACAATG 59.675 55.000 0.0 0.0 0.00 2.82 F
4012 5998 0.324943 CTTCCTCCGTCCCACAATGT 59.675 55.000 0.0 0.0 0.00 2.71 F
4077 6063 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.0 0.0 0.00 2.73 F
4078 6064 1.229131 ATGGGACGGAGGGAGTACTA 58.771 55.000 0.0 0.0 0.00 1.82 F
5893 7889 1.740025 GCAACCTTTATCGAAGCTGCT 59.260 47.619 0.0 0.0 38.57 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 3140 2.227388 GCACCCACTTCAATCAGACAAG 59.773 50.000 0.00 0.00 0.00 3.16 R
2192 3569 2.354003 CCATGGGTCAATGTTTGAAGGC 60.354 50.000 2.85 0.00 42.15 4.35 R
2953 4903 2.777832 AGCTGAAGCCTTGAGTTAGG 57.222 50.000 0.00 0.00 43.38 2.69 R
3998 5984 1.067425 CGTCTTACATTGTGGGACGGA 60.067 52.381 24.96 5.37 43.69 4.69 R
5266 7256 7.212976 TCTGAATCCTAGTGACAAGATTATGC 58.787 38.462 0.00 0.00 0.00 3.14 R
5898 7930 8.475639 AGAATAGAACTTGCGGTAATTCTCTAA 58.524 33.333 6.73 0.00 31.92 2.10 R
6089 8121 2.288091 CGGATGTCAAACATTGCCAACA 60.288 45.455 0.00 0.00 39.27 3.33 R
6184 8216 1.303888 AGCTCGTACCTTCGGTCCA 60.304 57.895 0.00 0.00 37.09 4.02 R
6284 8316 0.374758 CAGCATCATTTCCGGTCACG 59.625 55.000 0.00 0.00 40.55 4.35 R
6370 8402 5.123979 GCCAAACCAGAAGTAGAATACAAGG 59.876 44.000 0.00 0.00 46.26 3.61 R
7538 11596 0.240945 CTTGCCCTTTAACCTGCGTG 59.759 55.000 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 3.619233 AACTTTACTGCGCGAATGTTT 57.381 38.095 12.10 0.00 0.00 2.83
197 199 4.202070 TGGTTGCCAACTTGCTTTACTTAC 60.202 41.667 7.62 0.00 0.00 2.34
204 206 5.207768 CAACTTGCTTTACTTACACAGCAG 58.792 41.667 0.00 0.00 43.02 4.24
208 210 3.985279 TGCTTTACTTACACAGCAGTACG 59.015 43.478 0.00 0.00 37.35 3.67
311 1674 6.430308 CCTTACTGTACTGTCTGTTACTCTGA 59.570 42.308 8.85 0.00 0.00 3.27
319 1682 5.698545 ACTGTCTGTTACTCTGATTCTTTGC 59.301 40.000 0.00 0.00 0.00 3.68
320 1683 5.858381 TGTCTGTTACTCTGATTCTTTGCT 58.142 37.500 0.00 0.00 0.00 3.91
321 1684 6.291377 TGTCTGTTACTCTGATTCTTTGCTT 58.709 36.000 0.00 0.00 0.00 3.91
403 1766 0.108424 GACAGCTTCTCATGTCGGCT 60.108 55.000 0.00 0.00 36.76 5.52
406 1769 0.108424 AGCTTCTCATGTCGGCTGAC 60.108 55.000 19.20 19.20 45.71 3.51
476 1846 9.173021 CCAATTCATAGGTTATTGTCACAGTTA 57.827 33.333 0.00 0.00 0.00 2.24
512 1882 6.423905 ACACTATGCCTTGTATATTTGTAGCG 59.576 38.462 0.00 0.00 0.00 4.26
618 1989 8.782144 GCCAAAACATTTCAATTGATTCCTTAA 58.218 29.630 9.40 0.00 0.00 1.85
816 2188 4.539870 CAATCTGTTGGTGCTAACTTGTG 58.460 43.478 0.51 0.00 0.00 3.33
921 2293 4.458989 TGTCCATTGTAACTTTGATGCTCC 59.541 41.667 0.00 0.00 0.00 4.70
953 2325 4.582656 GGGGTTGCAGTATATGTATTTGCA 59.417 41.667 7.29 7.29 42.44 4.08
1456 2831 8.397906 GCTGTAGAATTGCAACAAATAGATGTA 58.602 33.333 0.00 0.00 32.02 2.29
1676 3051 5.700402 ACTTGTAGGAGATTAACCATGCT 57.300 39.130 0.00 0.00 0.00 3.79
1765 3140 5.973565 GTCAAAGATATACATGCACTTTGGC 59.026 40.000 18.22 14.87 43.91 4.52
1807 3182 3.550842 GCTCGTCATTTTGGCACTTCTTT 60.551 43.478 0.00 0.00 0.00 2.52
2047 3422 8.862325 ACATAATTCTTGTATGTGGTGAAGAA 57.138 30.769 0.00 0.00 40.00 2.52
2192 3569 2.167693 TGAAGCTGGTGGTCCTAATACG 59.832 50.000 0.00 0.00 34.23 3.06
2384 3761 1.402787 GTTTCTGGGGCATGGTATGG 58.597 55.000 0.00 0.00 0.00 2.74
2516 3893 8.514594 CATTAAACCTAGATCTTTTGCAGTCAA 58.485 33.333 0.00 0.00 0.00 3.18
2704 4652 8.840321 GGTTTATAAAGTCAGCATGTACATCAT 58.160 33.333 5.07 0.00 37.40 2.45
2953 4903 7.310664 TGATCTGCAATCAAGTGAAAGAAATC 58.689 34.615 8.52 0.00 0.00 2.17
3030 4980 6.519382 TCAAGTATCACTTATGCCATCTGAG 58.481 40.000 0.00 0.00 36.03 3.35
3643 5629 6.381801 TCTTTCGATCATTTTCCTTTTCAGC 58.618 36.000 0.00 0.00 0.00 4.26
3996 5982 8.441312 GTGGTAACGAACTAAACTAGTACTTC 57.559 38.462 0.00 0.00 37.47 3.01
3997 5983 7.539022 GTGGTAACGAACTAAACTAGTACTTCC 59.461 40.741 0.00 0.00 37.47 3.46
3998 5984 7.448469 TGGTAACGAACTAAACTAGTACTTCCT 59.552 37.037 0.00 0.00 37.47 3.36
3999 5985 7.965655 GGTAACGAACTAAACTAGTACTTCCTC 59.034 40.741 0.00 0.00 38.26 3.71
4000 5986 6.507958 ACGAACTAAACTAGTACTTCCTCC 57.492 41.667 0.00 0.00 38.26 4.30
4001 5987 5.123027 ACGAACTAAACTAGTACTTCCTCCG 59.877 44.000 0.00 0.00 38.26 4.63
4002 5988 5.123027 CGAACTAAACTAGTACTTCCTCCGT 59.877 44.000 0.00 0.00 38.26 4.69
4003 5989 6.507958 AACTAAACTAGTACTTCCTCCGTC 57.492 41.667 0.00 0.00 38.26 4.79
4004 5990 4.946772 ACTAAACTAGTACTTCCTCCGTCC 59.053 45.833 0.00 0.00 37.23 4.79
4005 5991 2.433662 ACTAGTACTTCCTCCGTCCC 57.566 55.000 0.00 0.00 0.00 4.46
4006 5992 1.637553 ACTAGTACTTCCTCCGTCCCA 59.362 52.381 0.00 0.00 0.00 4.37
4007 5993 2.022934 CTAGTACTTCCTCCGTCCCAC 58.977 57.143 0.00 0.00 0.00 4.61
4008 5994 0.113776 AGTACTTCCTCCGTCCCACA 59.886 55.000 0.00 0.00 0.00 4.17
4009 5995 0.971386 GTACTTCCTCCGTCCCACAA 59.029 55.000 0.00 0.00 0.00 3.33
4010 5996 1.553704 GTACTTCCTCCGTCCCACAAT 59.446 52.381 0.00 0.00 0.00 2.71
4011 5997 0.324943 ACTTCCTCCGTCCCACAATG 59.675 55.000 0.00 0.00 0.00 2.82
4012 5998 0.324943 CTTCCTCCGTCCCACAATGT 59.675 55.000 0.00 0.00 0.00 2.71
4013 5999 1.553248 CTTCCTCCGTCCCACAATGTA 59.447 52.381 0.00 0.00 0.00 2.29
4014 6000 1.646912 TCCTCCGTCCCACAATGTAA 58.353 50.000 0.00 0.00 0.00 2.41
4015 6001 1.553248 TCCTCCGTCCCACAATGTAAG 59.447 52.381 0.00 0.00 0.00 2.34
4016 6002 1.553248 CCTCCGTCCCACAATGTAAGA 59.447 52.381 0.00 0.00 0.00 2.10
4017 6003 2.618053 CTCCGTCCCACAATGTAAGAC 58.382 52.381 5.24 5.24 0.00 3.01
4019 6005 1.337447 CCGTCCCACAATGTAAGACGT 60.337 52.381 25.28 0.00 46.62 4.34
4020 6006 2.409975 CGTCCCACAATGTAAGACGTT 58.590 47.619 21.67 0.00 43.89 3.99
4021 6007 2.803956 CGTCCCACAATGTAAGACGTTT 59.196 45.455 21.67 0.00 43.89 3.60
4022 6008 3.249080 CGTCCCACAATGTAAGACGTTTT 59.751 43.478 21.67 0.00 43.89 2.43
4023 6009 4.260866 CGTCCCACAATGTAAGACGTTTTT 60.261 41.667 21.67 0.00 43.89 1.94
4024 6010 4.973663 GTCCCACAATGTAAGACGTTTTTG 59.026 41.667 0.00 0.00 0.00 2.44
4025 6011 3.733727 CCCACAATGTAAGACGTTTTTGC 59.266 43.478 0.00 0.00 0.00 3.68
4026 6012 4.355437 CCACAATGTAAGACGTTTTTGCA 58.645 39.130 0.00 1.87 0.00 4.08
4027 6013 4.800993 CCACAATGTAAGACGTTTTTGCAA 59.199 37.500 0.00 0.00 0.00 4.08
4028 6014 5.051774 CCACAATGTAAGACGTTTTTGCAAG 60.052 40.000 0.00 2.28 0.00 4.01
4029 6015 4.502645 ACAATGTAAGACGTTTTTGCAAGC 59.497 37.500 0.00 0.00 0.00 4.01
4030 6016 3.073144 TGTAAGACGTTTTTGCAAGCC 57.927 42.857 0.00 0.00 0.00 4.35
4031 6017 2.423892 TGTAAGACGTTTTTGCAAGCCA 59.576 40.909 0.00 0.00 0.00 4.75
4032 6018 2.888834 AAGACGTTTTTGCAAGCCAT 57.111 40.000 0.00 0.00 0.00 4.40
4033 6019 2.888834 AGACGTTTTTGCAAGCCATT 57.111 40.000 0.00 0.00 0.00 3.16
4034 6020 3.177997 AGACGTTTTTGCAAGCCATTT 57.822 38.095 0.00 0.00 0.00 2.32
4035 6021 3.530535 AGACGTTTTTGCAAGCCATTTT 58.469 36.364 0.00 0.00 0.00 1.82
4036 6022 4.688021 AGACGTTTTTGCAAGCCATTTTA 58.312 34.783 0.00 0.00 0.00 1.52
4037 6023 4.744631 AGACGTTTTTGCAAGCCATTTTAG 59.255 37.500 0.00 0.00 0.00 1.85
4038 6024 3.247411 ACGTTTTTGCAAGCCATTTTAGC 59.753 39.130 0.00 0.00 0.00 3.09
4039 6025 3.494251 CGTTTTTGCAAGCCATTTTAGCT 59.506 39.130 0.00 0.00 44.19 3.32
4048 6034 4.341366 AGCCATTTTAGCTTGCAAAAGT 57.659 36.364 0.00 0.00 37.24 2.66
4049 6035 4.060205 AGCCATTTTAGCTTGCAAAAGTG 58.940 39.130 0.00 0.00 37.24 3.16
4050 6036 3.809279 GCCATTTTAGCTTGCAAAAGTGT 59.191 39.130 0.00 0.00 0.00 3.55
4051 6037 4.084380 GCCATTTTAGCTTGCAAAAGTGTC 60.084 41.667 0.00 0.00 0.00 3.67
4052 6038 5.291971 CCATTTTAGCTTGCAAAAGTGTCT 58.708 37.500 0.00 0.00 0.00 3.41
4053 6039 5.754890 CCATTTTAGCTTGCAAAAGTGTCTT 59.245 36.000 0.00 0.00 0.00 3.01
4054 6040 6.922957 CCATTTTAGCTTGCAAAAGTGTCTTA 59.077 34.615 0.00 0.00 0.00 2.10
4055 6041 7.599998 CCATTTTAGCTTGCAAAAGTGTCTTAT 59.400 33.333 0.00 0.00 0.00 1.73
4056 6042 9.624697 CATTTTAGCTTGCAAAAGTGTCTTATA 57.375 29.630 0.00 0.00 0.00 0.98
4062 6048 8.408601 AGCTTGCAAAAGTGTCTTATATTATGG 58.591 33.333 0.00 0.00 0.00 2.74
4063 6049 7.649306 GCTTGCAAAAGTGTCTTATATTATGGG 59.351 37.037 0.00 0.00 0.00 4.00
4064 6050 8.815565 TTGCAAAAGTGTCTTATATTATGGGA 57.184 30.769 0.00 0.00 0.00 4.37
4065 6051 8.220755 TGCAAAAGTGTCTTATATTATGGGAC 57.779 34.615 0.00 0.00 0.00 4.46
4066 6052 7.011950 TGCAAAAGTGTCTTATATTATGGGACG 59.988 37.037 0.00 0.00 0.00 4.79
4067 6053 7.519970 GCAAAAGTGTCTTATATTATGGGACGG 60.520 40.741 0.00 0.00 0.00 4.79
4068 6054 6.989155 AAGTGTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
4069 6055 6.591750 AGTGTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
4070 6056 5.480772 AGTGTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
4071 6057 4.775780 TGTCTTATATTATGGGACGGAGGG 59.224 45.833 0.00 0.00 0.00 4.30
4072 6058 5.021458 GTCTTATATTATGGGACGGAGGGA 58.979 45.833 0.00 0.00 0.00 4.20
4073 6059 5.127356 GTCTTATATTATGGGACGGAGGGAG 59.873 48.000 0.00 0.00 0.00 4.30
4074 6060 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4075 6061 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
4076 6062 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
4077 6063 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
4078 6064 1.229131 ATGGGACGGAGGGAGTACTA 58.771 55.000 0.00 0.00 0.00 1.82
4284 6270 7.492994 GCGGATAAAAGTTCACTCTAGAAAGAT 59.507 37.037 0.00 0.00 0.00 2.40
5204 7194 7.011109 AGGAAAGGATTACACGATAAATGAACG 59.989 37.037 0.00 0.00 0.00 3.95
5233 7223 9.090692 CCATTTATTTTAAAAGCCATCTCAGTG 57.909 33.333 6.79 0.00 0.00 3.66
5491 7485 2.604046 ACAGTCTGGCGTGAATATCC 57.396 50.000 4.53 0.00 0.00 2.59
5893 7889 1.740025 GCAACCTTTATCGAAGCTGCT 59.260 47.619 0.00 0.00 38.57 4.24
6370 8402 9.449719 TCTTATTGGATTAGAAAGAAACAGGTC 57.550 33.333 0.00 0.00 0.00 3.85
6428 8460 6.882610 TGATAGCAGTCATTTTGAACTTGT 57.117 33.333 0.00 0.00 0.00 3.16
6447 8479 7.646446 ACTTGTGTGTTTTACCAACTTTTTC 57.354 32.000 0.00 0.00 0.00 2.29
6458 8490 2.159627 CCAACTTTTTCTACGCAGCGAT 59.840 45.455 24.65 8.54 0.00 4.58
6529 8561 5.972935 TCGCAGGTAAATGATTCAACTCTA 58.027 37.500 0.00 0.00 0.00 2.43
6563 8597 7.484035 AAATCAGTCAGTGTACTTCTGAAAC 57.516 36.000 17.90 10.60 42.42 2.78
6933 10991 2.099098 GGTGCATTTATTCCCTTGTCCG 59.901 50.000 0.00 0.00 0.00 4.79
7067 11125 4.445453 TGAGATTCAGACATTTGGATCCG 58.555 43.478 7.39 0.00 34.19 4.18
7151 11209 6.743575 AGGTATGCTACATTGACTTGTTTC 57.256 37.500 0.00 0.00 0.00 2.78
7153 11211 4.685169 ATGCTACATTGACTTGTTTCCG 57.315 40.909 0.00 0.00 0.00 4.30
7156 11214 3.364964 GCTACATTGACTTGTTTCCGGTG 60.365 47.826 0.00 0.00 0.00 4.94
7172 11230 1.001815 CGGTGACCGCAAACTGAATTT 60.002 47.619 12.53 0.00 41.17 1.82
7189 11247 6.072286 ACTGAATTTGATGCGAGAATTGTTCT 60.072 34.615 0.00 0.00 44.21 3.01
7195 11253 5.478407 TGATGCGAGAATTGTTCTGTCTTA 58.522 37.500 0.00 0.00 40.87 2.10
7224 11282 4.021102 AGCTGTAGTGGTGCTTGTAAAT 57.979 40.909 0.00 0.00 32.61 1.40
7265 11323 5.671082 GCTTTGTCTTGAACTTTTGTTTGGC 60.671 40.000 0.00 0.00 43.66 4.52
7534 11592 2.484770 GGCCGTGTGTGGATGTATACAT 60.485 50.000 18.31 18.31 39.70 2.29
7535 11593 3.202906 GCCGTGTGTGGATGTATACATT 58.797 45.455 19.19 3.85 36.57 2.71
7536 11594 4.373527 GCCGTGTGTGGATGTATACATTA 58.626 43.478 19.19 9.34 36.57 1.90
7538 11596 5.277154 GCCGTGTGTGGATGTATACATTAAC 60.277 44.000 19.19 18.63 36.57 2.01
7569 11629 6.980397 GGTTAAAGGGCAAGTGATTATGATTG 59.020 38.462 0.00 0.00 0.00 2.67
7675 11752 2.029964 GTTCAAGTCCCGGCGACA 59.970 61.111 20.68 0.00 44.66 4.35
7677 11754 2.204461 TTCAAGTCCCGGCGACAGA 61.204 57.895 20.68 15.76 44.66 3.41
7678 11755 1.750341 TTCAAGTCCCGGCGACAGAA 61.750 55.000 20.68 19.27 44.66 3.02
7682 11759 0.036306 AGTCCCGGCGACAGAATTTT 59.964 50.000 20.68 0.82 44.66 1.82
7683 11760 0.879090 GTCCCGGCGACAGAATTTTT 59.121 50.000 9.30 0.00 41.54 1.94
7699 11776 4.589046 TTTTTGGAGGCGGCTTCA 57.411 50.000 17.45 17.45 0.00 3.02
7700 11777 3.050089 TTTTTGGAGGCGGCTTCAT 57.950 47.368 22.21 0.00 0.00 2.57
7701 11778 2.208132 TTTTTGGAGGCGGCTTCATA 57.792 45.000 22.21 14.03 0.00 2.15
7702 11779 1.459450 TTTTGGAGGCGGCTTCATAC 58.541 50.000 22.21 3.07 0.00 2.39
7703 11780 0.393808 TTTGGAGGCGGCTTCATACC 60.394 55.000 22.21 13.79 0.00 2.73
7711 11788 2.256445 CGGCTTCATACCGTTTTTGG 57.744 50.000 0.00 0.00 45.70 3.28
7712 11789 1.731098 CGGCTTCATACCGTTTTTGGC 60.731 52.381 0.00 0.00 45.70 4.52
7834 12199 1.499007 AGGTTTCCTCTTTCCTTGGCA 59.501 47.619 0.00 0.00 0.00 4.92
7835 12200 1.889170 GGTTTCCTCTTTCCTTGGCAG 59.111 52.381 0.00 0.00 0.00 4.85
7897 12262 6.361768 AACCCGCTCCCAATTTTAAAATTA 57.638 33.333 22.44 9.48 36.52 1.40
7914 12279 4.946784 AATTACAAATTTCTCGCTCGCT 57.053 36.364 0.00 0.00 0.00 4.93
7921 12288 0.389948 TTTCTCGCTCGCTTCCTTCC 60.390 55.000 0.00 0.00 0.00 3.46
7944 12311 2.812619 CCCGGCAGGAGGAGAATCC 61.813 68.421 3.68 0.00 45.86 3.01
7973 12346 3.673484 CCACCAAAGCACCGGCAG 61.673 66.667 0.00 0.00 44.61 4.85
7974 12347 3.673484 CACCAAAGCACCGGCAGG 61.673 66.667 0.00 0.00 44.61 4.85
7977 12350 4.047059 CAAAGCACCGGCAGGCAG 62.047 66.667 14.75 0.00 44.61 4.85
8261 12647 1.258445 CCTCCTACAACCCGCTCACT 61.258 60.000 0.00 0.00 0.00 3.41
8422 12843 5.799213 AGACTTGAGAGGAACATTTACCTG 58.201 41.667 0.00 0.00 36.57 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 3.250744 CTCTAAACGGTCGAAAGCATCA 58.749 45.455 0.00 0.00 0.00 3.07
204 206 7.589954 AGCAAACATTTCACAGTAAAATCGTAC 59.410 33.333 0.00 0.00 0.00 3.67
208 210 9.677567 TTAGAGCAAACATTTCACAGTAAAATC 57.322 29.630 0.00 0.00 0.00 2.17
311 1674 4.280929 ACCGGCTTAAAAGAAGCAAAGAAT 59.719 37.500 0.00 0.00 44.71 2.40
319 1682 2.095212 GCAGGAACCGGCTTAAAAGAAG 60.095 50.000 0.00 0.00 34.41 2.85
320 1683 1.883926 GCAGGAACCGGCTTAAAAGAA 59.116 47.619 0.00 0.00 34.41 2.52
321 1684 1.202830 TGCAGGAACCGGCTTAAAAGA 60.203 47.619 15.80 0.00 37.97 2.52
403 1766 4.090819 TGGCACTAGTGTACTATTGGTCA 58.909 43.478 23.44 0.00 31.95 4.02
406 1769 4.870426 CACTTGGCACTAGTGTACTATTGG 59.130 45.833 23.44 8.89 38.51 3.16
476 1846 4.216411 AGGCATAGTGTACCAAAACGAT 57.784 40.909 0.00 0.00 0.00 3.73
618 1989 8.907222 TCCCTAGTAATTGAAACGTTTACTTT 57.093 30.769 14.65 9.86 37.37 2.66
649 2021 2.496679 ACTGTATATGCCCTGAGGGT 57.503 50.000 20.64 2.02 46.51 4.34
816 2188 2.849294 AGCCAAGAGAAGACCAGAAC 57.151 50.000 0.00 0.00 0.00 3.01
921 2293 1.101049 ACTGCAACCCCAGAAACACG 61.101 55.000 0.00 0.00 36.67 4.49
953 2325 6.128282 CCAAAGCAGTAACTAATTGATCGTGT 60.128 38.462 0.00 0.00 0.00 4.49
1429 2804 6.194796 TCTATTTGTTGCAATTCTACAGCC 57.805 37.500 0.59 0.00 32.37 4.85
1575 2950 5.985911 ACACTATATTACAAGGTTCGGCTT 58.014 37.500 0.00 0.00 0.00 4.35
1676 3051 4.217210 CACAACCCACCAGCCCCA 62.217 66.667 0.00 0.00 0.00 4.96
1765 3140 2.227388 GCACCCACTTCAATCAGACAAG 59.773 50.000 0.00 0.00 0.00 3.16
1807 3182 3.133183 TGAACTATGCCAGGTAATACGCA 59.867 43.478 0.00 0.00 35.35 5.24
2047 3422 8.579850 TTCTAATTGCATGTCCTCTAAACAAT 57.420 30.769 0.00 0.00 0.00 2.71
2192 3569 2.354003 CCATGGGTCAATGTTTGAAGGC 60.354 50.000 2.85 0.00 42.15 4.35
2420 3797 4.070716 AGAAAAGCTCAAGTCACATGAGG 58.929 43.478 11.89 0.00 43.60 3.86
2516 3893 5.185828 TGAGCAGTGTGTCACTAATGAGTAT 59.814 40.000 4.27 0.00 43.43 2.12
2704 4652 3.650948 AGATCCATGGAGTCTGATGACA 58.349 45.455 21.33 0.00 45.20 3.58
2886 4836 8.950210 CACTCTTTAAAATCTTCCTTATCAGCA 58.050 33.333 0.00 0.00 0.00 4.41
2953 4903 2.777832 AGCTGAAGCCTTGAGTTAGG 57.222 50.000 0.00 0.00 43.38 2.69
3602 5588 7.821595 TCGAAAGATACATTGTAATCAACGT 57.178 32.000 0.00 0.00 33.51 3.99
3643 5629 4.307432 AGATCTTTACGATAACCATGCCG 58.693 43.478 0.00 0.00 30.84 5.69
3697 5683 6.054941 GTGACAAACCTGGGAATTTCAAAAT 58.945 36.000 0.00 0.00 0.00 1.82
3995 5981 1.553248 CTTACATTGTGGGACGGAGGA 59.447 52.381 0.00 0.00 0.00 3.71
3996 5982 1.553248 TCTTACATTGTGGGACGGAGG 59.447 52.381 0.00 0.00 0.00 4.30
3997 5983 2.618053 GTCTTACATTGTGGGACGGAG 58.382 52.381 0.00 0.00 0.00 4.63
3998 5984 1.067425 CGTCTTACATTGTGGGACGGA 60.067 52.381 24.96 5.37 43.69 4.69
3999 5985 1.355971 CGTCTTACATTGTGGGACGG 58.644 55.000 24.96 14.26 43.69 4.79
4001 5987 4.823790 AAAACGTCTTACATTGTGGGAC 57.176 40.909 0.00 6.72 0.00 4.46
4002 5988 4.498345 GCAAAAACGTCTTACATTGTGGGA 60.498 41.667 0.00 0.00 0.00 4.37
4003 5989 3.733727 GCAAAAACGTCTTACATTGTGGG 59.266 43.478 0.00 0.00 0.00 4.61
4004 5990 4.355437 TGCAAAAACGTCTTACATTGTGG 58.645 39.130 0.00 0.00 0.00 4.17
4005 5991 5.554324 GCTTGCAAAAACGTCTTACATTGTG 60.554 40.000 0.00 0.00 0.00 3.33
4006 5992 4.502645 GCTTGCAAAAACGTCTTACATTGT 59.497 37.500 0.00 0.00 0.00 2.71
4007 5993 4.085107 GGCTTGCAAAAACGTCTTACATTG 60.085 41.667 0.00 0.00 0.00 2.82
4008 5994 4.048504 GGCTTGCAAAAACGTCTTACATT 58.951 39.130 0.00 0.00 0.00 2.71
4009 5995 3.067461 TGGCTTGCAAAAACGTCTTACAT 59.933 39.130 0.00 0.00 0.00 2.29
4010 5996 2.423892 TGGCTTGCAAAAACGTCTTACA 59.576 40.909 0.00 0.00 0.00 2.41
4011 5997 3.073144 TGGCTTGCAAAAACGTCTTAC 57.927 42.857 0.00 0.00 0.00 2.34
4012 5998 4.314740 AATGGCTTGCAAAAACGTCTTA 57.685 36.364 0.00 0.00 0.00 2.10
4013 5999 2.888834 ATGGCTTGCAAAAACGTCTT 57.111 40.000 0.00 0.00 0.00 3.01
4014 6000 2.888834 AATGGCTTGCAAAAACGTCT 57.111 40.000 0.00 0.00 0.00 4.18
4015 6001 3.942539 AAAATGGCTTGCAAAAACGTC 57.057 38.095 0.00 0.00 0.00 4.34
4016 6002 3.247411 GCTAAAATGGCTTGCAAAAACGT 59.753 39.130 0.00 0.00 0.00 3.99
4017 6003 3.494251 AGCTAAAATGGCTTGCAAAAACG 59.506 39.130 0.00 0.00 36.56 3.60
4018 6004 5.422666 AAGCTAAAATGGCTTGCAAAAAC 57.577 34.783 0.00 0.00 46.53 2.43
4027 6013 4.060205 CACTTTTGCAAGCTAAAATGGCT 58.940 39.130 0.00 0.00 42.31 4.75
4028 6014 3.809279 ACACTTTTGCAAGCTAAAATGGC 59.191 39.130 13.09 0.00 32.57 4.40
4029 6015 5.291971 AGACACTTTTGCAAGCTAAAATGG 58.708 37.500 13.09 4.76 32.57 3.16
4030 6016 6.833342 AAGACACTTTTGCAAGCTAAAATG 57.167 33.333 8.41 8.41 32.57 2.32
4036 6022 8.408601 CCATAATATAAGACACTTTTGCAAGCT 58.591 33.333 0.00 0.00 32.57 3.74
4037 6023 7.649306 CCCATAATATAAGACACTTTTGCAAGC 59.351 37.037 0.00 0.00 32.57 4.01
4038 6024 8.902806 TCCCATAATATAAGACACTTTTGCAAG 58.097 33.333 0.00 0.00 35.92 4.01
4039 6025 8.682710 GTCCCATAATATAAGACACTTTTGCAA 58.317 33.333 0.00 0.00 0.00 4.08
4040 6026 7.011950 CGTCCCATAATATAAGACACTTTTGCA 59.988 37.037 0.00 0.00 0.00 4.08
4041 6027 7.352739 CGTCCCATAATATAAGACACTTTTGC 58.647 38.462 0.00 0.00 0.00 3.68
4042 6028 7.713507 TCCGTCCCATAATATAAGACACTTTTG 59.286 37.037 0.00 0.00 0.00 2.44
4043 6029 7.798071 TCCGTCCCATAATATAAGACACTTTT 58.202 34.615 0.00 0.00 0.00 2.27
4044 6030 7.369551 TCCGTCCCATAATATAAGACACTTT 57.630 36.000 0.00 0.00 0.00 2.66
4045 6031 6.014499 CCTCCGTCCCATAATATAAGACACTT 60.014 42.308 0.00 0.00 0.00 3.16
4046 6032 5.480772 CCTCCGTCCCATAATATAAGACACT 59.519 44.000 0.00 0.00 0.00 3.55
4047 6033 5.337330 CCCTCCGTCCCATAATATAAGACAC 60.337 48.000 0.00 0.00 0.00 3.67
4048 6034 4.775780 CCCTCCGTCCCATAATATAAGACA 59.224 45.833 0.00 0.00 0.00 3.41
4049 6035 5.021458 TCCCTCCGTCCCATAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
4050 6036 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4051 6037 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4052 6038 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4053 6039 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4054 6040 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4055 6041 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
4056 6042 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
4057 6043 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
4058 6044 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4059 6045 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
4060 6046 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
4061 6047 3.735720 ATATAGTACTCCCTCCGTCCC 57.264 52.381 0.00 0.00 0.00 4.46
4062 6048 6.059787 TCTAATATAGTACTCCCTCCGTCC 57.940 45.833 0.00 0.00 0.00 4.79
4063 6049 8.263640 TGTATCTAATATAGTACTCCCTCCGTC 58.736 40.741 0.00 0.00 0.00 4.79
4064 6050 8.155620 TGTATCTAATATAGTACTCCCTCCGT 57.844 38.462 0.00 0.00 0.00 4.69
5175 7165 9.542462 TCATTTATCGTGTAATCCTTTCCTTAG 57.458 33.333 0.00 0.00 0.00 2.18
5257 7247 7.325660 AGTGACAAGATTATGCCTGTATTTG 57.674 36.000 0.00 0.00 0.00 2.32
5266 7256 7.212976 TCTGAATCCTAGTGACAAGATTATGC 58.787 38.462 0.00 0.00 0.00 3.14
5898 7930 8.475639 AGAATAGAACTTGCGGTAATTCTCTAA 58.524 33.333 6.73 0.00 31.92 2.10
6089 8121 2.288091 CGGATGTCAAACATTGCCAACA 60.288 45.455 0.00 0.00 39.27 3.33
6184 8216 1.303888 AGCTCGTACCTTCGGTCCA 60.304 57.895 0.00 0.00 37.09 4.02
6284 8316 0.374758 CAGCATCATTTCCGGTCACG 59.625 55.000 0.00 0.00 40.55 4.35
6370 8402 5.123979 GCCAAACCAGAAGTAGAATACAAGG 59.876 44.000 0.00 0.00 46.26 3.61
6428 8460 6.028987 GCGTAGAAAAAGTTGGTAAAACACA 58.971 36.000 0.00 0.00 0.00 3.72
6458 8490 2.168106 ACAACTTGCCATTTCAACAGCA 59.832 40.909 0.00 0.00 0.00 4.41
6529 8561 9.896645 AGTACACTGACTGATTTATTGATTCAT 57.103 29.630 0.00 0.00 0.00 2.57
6563 8597 0.865769 GTAGACAAACTGTGGCACGG 59.134 55.000 24.47 24.47 37.96 4.94
6664 10722 0.182061 ATGGCACAGGCATCAGTAGG 59.818 55.000 0.00 0.00 45.69 3.18
6808 10866 5.955961 TGAATGGTAGATGGATGAAGTGA 57.044 39.130 0.00 0.00 0.00 3.41
6933 10991 6.515272 TTTCATCAGCTCAGTTTAATTCCC 57.485 37.500 0.00 0.00 0.00 3.97
7067 11125 5.958955 ACCAGATGTAAGTACCGTCTTTAC 58.041 41.667 0.00 0.00 0.00 2.01
7153 11211 2.034053 TCAAATTCAGTTTGCGGTCACC 59.966 45.455 0.00 0.00 45.45 4.02
7156 11214 2.663119 GCATCAAATTCAGTTTGCGGTC 59.337 45.455 0.00 0.00 45.45 4.79
7172 11230 3.930336 AGACAGAACAATTCTCGCATCA 58.070 40.909 0.00 0.00 38.11 3.07
7174 11232 5.724328 TCTAAGACAGAACAATTCTCGCAT 58.276 37.500 0.00 0.00 38.11 4.73
7175 11233 5.134202 TCTAAGACAGAACAATTCTCGCA 57.866 39.130 0.00 0.00 38.11 5.10
7176 11234 6.654793 AATCTAAGACAGAACAATTCTCGC 57.345 37.500 0.00 0.00 38.11 5.03
7189 11247 7.067129 CACCACTACAGCTACTAATCTAAGACA 59.933 40.741 0.00 0.00 0.00 3.41
7195 11253 4.282496 AGCACCACTACAGCTACTAATCT 58.718 43.478 0.00 0.00 36.73 2.40
7224 11282 8.830201 AGACAAAGCATTATAAACATTGCAAA 57.170 26.923 1.71 0.00 37.56 3.68
7242 11300 5.407995 TGCCAAACAAAAGTTCAAGACAAAG 59.592 36.000 0.00 0.00 0.00 2.77
7265 11323 1.727511 CCGGCACCACCTATTGCATG 61.728 60.000 0.00 0.00 40.75 4.06
7471 11529 7.747155 AATCCAAATTCATGTTTTGCATTGA 57.253 28.000 14.48 9.18 35.19 2.57
7534 11592 1.881324 GCCCTTTAACCTGCGTGTTAA 59.119 47.619 6.54 6.54 38.55 2.01
7535 11593 1.202782 TGCCCTTTAACCTGCGTGTTA 60.203 47.619 0.00 0.00 0.00 2.41
7536 11594 0.466555 TGCCCTTTAACCTGCGTGTT 60.467 50.000 0.00 0.00 0.00 3.32
7538 11596 0.240945 CTTGCCCTTTAACCTGCGTG 59.759 55.000 0.00 0.00 0.00 5.34
7569 11629 5.593010 AGCTTTAGTCTGAACCATATCGAC 58.407 41.667 0.00 0.00 0.00 4.20
7682 11759 1.816224 GTATGAAGCCGCCTCCAAAAA 59.184 47.619 0.00 0.00 0.00 1.94
7683 11760 1.459450 GTATGAAGCCGCCTCCAAAA 58.541 50.000 0.00 0.00 0.00 2.44
7684 11761 0.393808 GGTATGAAGCCGCCTCCAAA 60.394 55.000 0.00 0.00 0.00 3.28
7685 11762 1.223487 GGTATGAAGCCGCCTCCAA 59.777 57.895 0.00 0.00 0.00 3.53
7686 11763 2.908015 GGTATGAAGCCGCCTCCA 59.092 61.111 0.00 0.00 0.00 3.86
7687 11764 2.280186 CGGTATGAAGCCGCCTCC 60.280 66.667 0.00 0.00 42.82 4.30
7693 11770 1.271102 TGCCAAAAACGGTATGAAGCC 59.729 47.619 0.00 0.00 0.00 4.35
7694 11771 2.715737 TGCCAAAAACGGTATGAAGC 57.284 45.000 0.00 0.00 0.00 3.86
7695 11772 4.497473 TCTTGCCAAAAACGGTATGAAG 57.503 40.909 0.00 0.00 0.00 3.02
7696 11773 5.461032 AATCTTGCCAAAAACGGTATGAA 57.539 34.783 0.00 0.00 30.51 2.57
7697 11774 5.461032 AAATCTTGCCAAAAACGGTATGA 57.539 34.783 0.00 0.00 31.11 2.15
7698 11775 4.625311 GGAAATCTTGCCAAAAACGGTATG 59.375 41.667 0.00 0.00 0.00 2.39
7699 11776 4.526650 AGGAAATCTTGCCAAAAACGGTAT 59.473 37.500 0.00 0.00 0.00 2.73
7700 11777 3.892588 AGGAAATCTTGCCAAAAACGGTA 59.107 39.130 0.00 0.00 0.00 4.02
7701 11778 2.698274 AGGAAATCTTGCCAAAAACGGT 59.302 40.909 0.00 0.00 0.00 4.83
7702 11779 3.385193 AGGAAATCTTGCCAAAAACGG 57.615 42.857 0.00 0.00 0.00 4.44
7703 11780 8.702163 AAATATAGGAAATCTTGCCAAAAACG 57.298 30.769 0.00 0.00 0.00 3.60
7709 11786 9.874205 CTTTCAAAAATATAGGAAATCTTGCCA 57.126 29.630 0.00 0.00 0.00 4.92
7710 11787 9.317936 CCTTTCAAAAATATAGGAAATCTTGCC 57.682 33.333 0.00 0.00 0.00 4.52
7824 12189 0.884704 GAGCACGACTGCCAAGGAAA 60.885 55.000 0.00 0.00 45.53 3.13
7834 12199 3.649277 GATGGCCACGAGCACGACT 62.649 63.158 8.16 0.00 46.50 4.18
7835 12200 3.188786 GATGGCCACGAGCACGAC 61.189 66.667 8.16 0.00 46.50 4.34
7897 12262 1.464997 GGAAGCGAGCGAGAAATTTGT 59.535 47.619 0.00 0.00 0.00 2.83
7914 12279 0.837272 CTGCCGGGATTAGGAAGGAA 59.163 55.000 2.18 0.00 30.48 3.36
7921 12288 0.470080 TCTCCTCCTGCCGGGATTAG 60.470 60.000 2.18 0.00 44.15 1.73
7960 12333 4.047059 CTGCCTGCCGGTGCTTTG 62.047 66.667 1.90 0.00 38.71 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.