Multiple sequence alignment - TraesCS4D01G178700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G178700 chr4D 100.000 7202 0 0 1 7202 310098478 310105679 0.000000e+00 13300.0
1 TraesCS4D01G178700 chr4D 86.885 122 11 4 3464 3581 44636847 44636727 1.630000e-26 132.0
2 TraesCS4D01G178700 chr4D 82.734 139 21 2 3442 3578 347509191 347509328 3.530000e-23 121.0
3 TraesCS4D01G178700 chr4D 93.750 48 3 0 1602 1649 395948967 395948920 1.000000e-08 73.1
4 TraesCS4D01G178700 chr4D 95.556 45 1 1 1598 1642 325105011 325104968 3.600000e-08 71.3
5 TraesCS4D01G178700 chr4A 94.732 5809 151 57 763 6516 164636505 164630797 0.000000e+00 8889.0
6 TraesCS4D01G178700 chr4A 81.307 551 24 35 6683 7200 164630635 164630131 2.450000e-99 374.0
7 TraesCS4D01G178700 chr4A 90.566 53 5 0 1595 1647 643061150 643061202 3.600000e-08 71.3
8 TraesCS4D01G178700 chr4B 95.978 4823 127 21 544 5341 387499930 387504710 0.000000e+00 7769.0
9 TraesCS4D01G178700 chr4B 92.857 518 19 5 5340 5840 387504804 387505320 0.000000e+00 736.0
10 TraesCS4D01G178700 chr4B 84.916 716 34 39 5820 6503 387505347 387506020 0.000000e+00 656.0
11 TraesCS4D01G178700 chr4B 88.214 543 36 2 1 543 387499252 387499766 2.210000e-174 623.0
12 TraesCS4D01G178700 chr4B 87.162 296 15 9 6602 6888 387506125 387506406 1.510000e-81 315.0
13 TraesCS4D01G178700 chr4B 84.106 302 15 10 6902 7202 387506388 387506657 1.990000e-65 261.0
14 TraesCS4D01G178700 chr7B 92.113 355 25 3 46 398 605423500 605423853 1.400000e-136 497.0
15 TraesCS4D01G178700 chr7B 97.638 127 2 1 394 519 605423820 605423946 4.380000e-52 217.0
16 TraesCS4D01G178700 chr7B 82.639 144 17 5 3441 3578 416437480 416437339 3.530000e-23 121.0
17 TraesCS4D01G178700 chr1B 91.039 279 22 2 1 279 39966562 39966287 2.450000e-99 374.0
18 TraesCS4D01G178700 chr1B 97.479 119 3 0 400 518 39953685 39953567 3.410000e-48 204.0
19 TraesCS4D01G178700 chr1B 94.444 36 1 1 3399 3434 133412491 133412525 4.000000e-03 54.7
20 TraesCS4D01G178700 chr2D 84.034 357 26 14 166 519 626768975 626769303 1.510000e-81 315.0
21 TraesCS4D01G178700 chr2D 91.275 149 12 1 1 149 626760082 626760229 1.230000e-47 202.0
22 TraesCS4D01G178700 chr2D 84.932 146 20 2 1015 1160 410424207 410424064 5.820000e-31 147.0
23 TraesCS4D01G178700 chr2D 95.745 47 2 0 1602 1648 23143417 23143463 7.750000e-10 76.8
24 TraesCS4D01G178700 chr2D 97.727 44 1 0 1602 1645 574101116 574101073 7.750000e-10 76.8
25 TraesCS4D01G178700 chr5A 92.746 193 13 1 1 193 673086370 673086179 1.980000e-70 278.0
26 TraesCS4D01G178700 chr5A 96.923 130 1 2 394 522 673086086 673085959 1.570000e-51 215.0
27 TraesCS4D01G178700 chr5A 91.406 128 9 2 273 398 673086180 673086053 2.670000e-39 174.0
28 TraesCS4D01G178700 chr5A 86.154 130 13 3 525 651 575517894 575517767 1.260000e-27 135.0
29 TraesCS4D01G178700 chr5A 95.000 40 1 1 3396 3434 40917674 40917713 2.170000e-05 62.1
30 TraesCS4D01G178700 chr3D 89.344 122 8 3 527 645 300587666 300587547 1.620000e-31 148.0
31 TraesCS4D01G178700 chr3D 84.962 133 19 1 520 651 301895335 301895467 4.530000e-27 134.0
32 TraesCS4D01G178700 chr3D 95.745 47 2 0 1602 1648 562693617 562693571 7.750000e-10 76.8
33 TraesCS4D01G178700 chr2A 84.932 146 20 2 1015 1160 578601967 578602110 5.820000e-31 147.0
34 TraesCS4D01G178700 chr2A 87.395 119 11 3 3462 3578 89536481 89536365 4.530000e-27 134.0
35 TraesCS4D01G178700 chr2A 82.781 151 17 6 526 672 516473100 516472955 7.580000e-25 126.0
36 TraesCS4D01G178700 chr2A 100.000 28 0 0 496 523 731484235 731484208 1.300000e-02 52.8
37 TraesCS4D01G178700 chr2B 86.364 132 18 0 1015 1146 485046026 485045895 2.090000e-30 145.0
38 TraesCS4D01G178700 chr2B 86.869 99 13 0 410 508 481886063 481885965 2.120000e-20 111.0
39 TraesCS4D01G178700 chr3B 86.719 128 12 3 527 651 5228892 5229017 3.500000e-28 137.0
40 TraesCS4D01G178700 chr3B 87.395 119 11 3 3462 3578 721491837 721491953 4.530000e-27 134.0
41 TraesCS4D01G178700 chr3B 85.938 128 13 3 527 651 3607727 3607602 1.630000e-26 132.0
42 TraesCS4D01G178700 chr3B 95.833 48 1 1 1602 1648 526495809 526495856 7.750000e-10 76.8
43 TraesCS4D01G178700 chr5B 85.938 128 13 3 527 651 203674344 203674219 1.630000e-26 132.0
44 TraesCS4D01G178700 chr5B 82.192 146 18 5 3442 3581 482295475 482295332 1.270000e-22 119.0
45 TraesCS4D01G178700 chr6A 82.781 151 19 4 525 672 92573024 92572878 2.110000e-25 128.0
46 TraesCS4D01G178700 chr6D 82.979 141 17 5 3442 3577 470623869 470624007 3.530000e-23 121.0
47 TraesCS4D01G178700 chr1D 95.745 47 2 0 1602 1648 476449370 476449416 7.750000e-10 76.8
48 TraesCS4D01G178700 chr1D 94.444 36 1 1 3399 3434 80632467 80632501 4.000000e-03 54.7
49 TraesCS4D01G178700 chrUn 100.000 31 0 0 3404 3434 263052535 263052565 2.810000e-04 58.4
50 TraesCS4D01G178700 chrUn 100.000 31 0 0 3404 3434 369972520 369972550 2.810000e-04 58.4
51 TraesCS4D01G178700 chr7D 92.500 40 2 1 3396 3434 89889898 89889859 1.000000e-03 56.5
52 TraesCS4D01G178700 chr7A 88.889 45 4 1 3406 3450 228950515 228950558 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G178700 chr4D 310098478 310105679 7201 False 13300.000000 13300 100.000000 1 7202 1 chr4D.!!$F1 7201
1 TraesCS4D01G178700 chr4A 164630131 164636505 6374 True 4631.500000 8889 88.019500 763 7200 2 chr4A.!!$R1 6437
2 TraesCS4D01G178700 chr4B 387499252 387506657 7405 False 1726.666667 7769 88.872167 1 7202 6 chr4B.!!$F1 7201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 1078 0.108585 TGCAGAAACACCCTCTCCAC 59.891 55.000 0.00 0.00 0.00 4.02 F
1500 1671 0.874390 GATGGTGTGTGCGTCAACAT 59.126 50.000 5.95 5.95 44.49 2.71 F
1502 1673 1.098869 TGGTGTGTGCGTCAACATTT 58.901 45.000 0.00 0.00 31.49 2.32 F
1503 1674 1.474478 TGGTGTGTGCGTCAACATTTT 59.526 42.857 0.00 0.00 31.49 1.82 F
1504 1675 2.094494 TGGTGTGTGCGTCAACATTTTT 60.094 40.909 0.00 0.00 31.49 1.94 F
2462 2656 3.490348 CCATTCCTGGTGAGACACTTTT 58.510 45.455 0.00 0.00 37.79 2.27 F
3531 3729 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29 F
3554 3752 2.612604 ACATATTTGTGAGCGTGCGTA 58.387 42.857 0.00 0.00 33.85 4.42 F
4209 4410 3.256704 TGTATTCCTTGGGTCCTCTGTT 58.743 45.455 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 2081 2.380064 ATGTGACCAAAGGGAAGCAA 57.620 45.000 0.00 0.0 38.05 3.91 R
3388 3582 1.064952 GGTTCTGTGTTGTGGTTTCCG 59.935 52.381 0.00 0.0 0.00 4.30 R
3490 3684 1.745115 CACATGCACACCCTACCCG 60.745 63.158 0.00 0.0 0.00 5.28 R
3531 3729 2.347150 CGCACGCTCACAAATATGTACA 59.653 45.455 0.00 0.0 37.82 2.90 R
3532 3730 2.347452 ACGCACGCTCACAAATATGTAC 59.653 45.455 0.00 0.0 37.82 2.90 R
3534 3732 1.438651 ACGCACGCTCACAAATATGT 58.561 45.000 0.00 0.0 41.61 2.29 R
5311 5522 1.271656 AGACTCTGTTCCGTTAACCCG 59.728 52.381 0.00 0.0 37.27 5.28 R
5597 5904 0.868406 GCTCCGTCACAGAAAACTGG 59.132 55.000 0.00 0.0 0.00 4.00 R
6202 6576 0.034089 ACTGGCTGGCTGGAATTACC 60.034 55.000 12.46 0.0 39.54 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.542497 TGGAGTACACATTCAACATTTAGTAC 57.458 34.615 0.00 0.00 0.00 2.73
54 55 8.362639 ACTGATTTGAAAGTACATCAAAAGCAT 58.637 29.630 22.63 11.83 46.46 3.79
55 56 8.523523 TGATTTGAAAGTACATCAAAAGCATG 57.476 30.769 22.63 0.00 46.46 4.06
67 68 8.798859 ACATCAAAAGCATGAACTAGATAACT 57.201 30.769 0.00 0.00 32.06 2.24
71 72 9.587772 TCAAAAGCATGAACTAGATAACTAGAC 57.412 33.333 13.52 7.72 46.34 2.59
99 100 0.178953 ACAGGATGCCAAACCAAGCT 60.179 50.000 0.00 0.00 42.53 3.74
114 115 7.542130 CCAAACCAAGCTTAGCTAATTAAGTTG 59.458 37.037 7.32 6.10 38.25 3.16
118 119 5.491635 AGCTTAGCTAATTAAGTTGCTGC 57.508 39.130 19.55 15.32 36.99 5.25
125 126 5.183713 AGCTAATTAAGTTGCTGCACATCAA 59.816 36.000 10.94 0.00 34.19 2.57
139 140 6.348786 GCTGCACATCAACTTCATAAGAAAGA 60.349 38.462 0.00 0.00 32.35 2.52
163 164 6.025749 ACATGAACGAGAGAAGACATACAA 57.974 37.500 0.00 0.00 0.00 2.41
197 198 2.359975 GACCGCAAGAACCAGGGG 60.360 66.667 0.00 0.00 42.95 4.79
213 214 3.648545 CCAGGGGAAGAGGATTAGTAAGG 59.351 52.174 0.00 0.00 0.00 2.69
220 221 3.851979 AGAGGATTAGTAAGGGAGGAGC 58.148 50.000 0.00 0.00 0.00 4.70
223 224 3.051727 AGGATTAGTAAGGGAGGAGCTGT 60.052 47.826 0.00 0.00 0.00 4.40
237 238 1.150081 GCTGTGGGATGGAGATGGG 59.850 63.158 0.00 0.00 0.00 4.00
240 241 0.920763 TGTGGGATGGAGATGGGCTT 60.921 55.000 0.00 0.00 0.00 4.35
242 243 1.152368 GGGATGGAGATGGGCTTGG 59.848 63.158 0.00 0.00 0.00 3.61
259 260 2.460757 TGGGGCAAAACGTAGACTAC 57.539 50.000 2.24 2.24 0.00 2.73
262 263 2.257034 GGGCAAAACGTAGACTACTCG 58.743 52.381 10.82 1.26 0.00 4.18
284 285 4.393062 CGTGTTGATTGCCTTTAGACATCT 59.607 41.667 0.00 0.00 0.00 2.90
302 303 8.485976 AGACATCTGCTCTTAATAAACAAGAC 57.514 34.615 0.00 0.00 0.00 3.01
317 318 5.470047 AACAAGACAATAACTCCTCTCGT 57.530 39.130 0.00 0.00 0.00 4.18
350 351 4.347000 GGGCCATGGTACTAATTGACTCTA 59.653 45.833 14.67 0.00 0.00 2.43
381 382 9.080097 ACAATGTCTATATAGGAGTACTTCACC 57.920 37.037 9.89 0.00 0.00 4.02
395 396 7.364762 GGAGTACTTCACCCTGAGAAATGAATA 60.365 40.741 0.00 0.00 31.00 1.75
396 397 8.095452 AGTACTTCACCCTGAGAAATGAATAT 57.905 34.615 0.00 0.00 31.00 1.28
397 398 9.213777 AGTACTTCACCCTGAGAAATGAATATA 57.786 33.333 0.00 0.00 31.00 0.86
398 399 9.482627 GTACTTCACCCTGAGAAATGAATATAG 57.517 37.037 0.00 0.00 31.00 1.31
399 400 8.324191 ACTTCACCCTGAGAAATGAATATAGA 57.676 34.615 0.00 0.00 31.00 1.98
400 401 8.428063 ACTTCACCCTGAGAAATGAATATAGAG 58.572 37.037 0.00 0.00 31.00 2.43
401 402 7.921041 TCACCCTGAGAAATGAATATAGAGT 57.079 36.000 0.00 0.00 0.00 3.24
402 403 9.434275 TTCACCCTGAGAAATGAATATAGAGTA 57.566 33.333 0.00 0.00 0.00 2.59
403 404 8.861086 TCACCCTGAGAAATGAATATAGAGTAC 58.139 37.037 0.00 0.00 0.00 2.73
404 405 8.865090 CACCCTGAGAAATGAATATAGAGTACT 58.135 37.037 0.00 0.00 0.00 2.73
405 406 9.440761 ACCCTGAGAAATGAATATAGAGTACTT 57.559 33.333 0.00 0.00 0.00 2.24
406 407 9.921637 CCCTGAGAAATGAATATAGAGTACTTC 57.078 37.037 0.00 0.00 0.00 3.01
410 411 9.699703 GAGAAATGAATATAGAGTACTTCACCC 57.300 37.037 0.00 0.00 31.00 4.61
411 412 9.440761 AGAAATGAATATAGAGTACTTCACCCT 57.559 33.333 0.00 0.00 31.00 4.34
412 413 9.482627 GAAATGAATATAGAGTACTTCACCCTG 57.517 37.037 0.00 0.00 31.00 4.45
413 414 8.783660 AATGAATATAGAGTACTTCACCCTGA 57.216 34.615 0.00 0.00 31.00 3.86
414 415 7.825331 TGAATATAGAGTACTTCACCCTGAG 57.175 40.000 0.00 0.00 0.00 3.35
415 416 7.583625 TGAATATAGAGTACTTCACCCTGAGA 58.416 38.462 0.00 0.00 0.00 3.27
416 417 8.059461 TGAATATAGAGTACTTCACCCTGAGAA 58.941 37.037 0.00 0.00 0.00 2.87
417 418 8.840200 AATATAGAGTACTTCACCCTGAGAAA 57.160 34.615 0.00 0.00 0.00 2.52
418 419 9.440761 AATATAGAGTACTTCACCCTGAGAAAT 57.559 33.333 0.00 0.00 0.00 2.17
419 420 5.413309 AGAGTACTTCACCCTGAGAAATG 57.587 43.478 0.00 0.00 0.00 2.32
420 421 5.087323 AGAGTACTTCACCCTGAGAAATGA 58.913 41.667 0.00 0.00 0.00 2.57
421 422 5.544176 AGAGTACTTCACCCTGAGAAATGAA 59.456 40.000 0.00 0.00 0.00 2.57
422 423 6.214412 AGAGTACTTCACCCTGAGAAATGAAT 59.786 38.462 0.00 0.00 31.00 2.57
432 433 5.928839 CCCTGAGAAATGAATATACCTGACG 59.071 44.000 0.00 0.00 0.00 4.35
496 497 0.314302 ATATAGACCTCGCGTGCCAC 59.686 55.000 5.77 0.00 0.00 5.01
525 526 6.822073 TCACTCGTGATTTATCGGTTATTG 57.178 37.500 0.00 0.00 34.14 1.90
543 544 9.052759 CGGTTATTGTATGCTTTAGTTCCTTAT 57.947 33.333 0.00 0.00 0.00 1.73
581 747 4.985538 AGTCACTTCTTACCGGACTATG 57.014 45.455 9.46 0.00 37.08 2.23
601 767 1.068588 GGACTTTGGGGTTGCTCAAAC 59.931 52.381 0.00 0.00 38.12 2.93
613 779 4.455124 GTTGCTCAAACGTCATCTGTAAC 58.545 43.478 0.00 0.00 0.00 2.50
627 793 8.430828 CGTCATCTGTAACATGATGATCATAAC 58.569 37.037 8.54 7.55 46.89 1.89
630 796 9.148104 CATCTGTAACATGATGATCATAACGAT 57.852 33.333 8.54 10.32 41.69 3.73
632 798 9.626045 TCTGTAACATGATGATCATAACGATAC 57.374 33.333 8.54 3.92 34.28 2.24
681 847 3.045634 ACGGGGATAGATTTGGTCATCA 58.954 45.455 0.00 0.00 0.00 3.07
690 856 5.831702 AGATTTGGTCATCAGCTCAATTC 57.168 39.130 0.00 0.00 0.00 2.17
694 860 1.063174 GGTCATCAGCTCAATTCGTGC 59.937 52.381 0.00 0.00 0.00 5.34
708 874 5.963004 TCAATTCGTGCGTCATTTTTATAGC 59.037 36.000 0.00 0.00 0.00 2.97
742 908 1.865865 TCTCGTCAAGTTCAAGCACC 58.134 50.000 0.00 0.00 0.00 5.01
743 909 1.412710 TCTCGTCAAGTTCAAGCACCT 59.587 47.619 0.00 0.00 0.00 4.00
747 913 2.288666 GTCAAGTTCAAGCACCTGTGA 58.711 47.619 0.51 0.00 0.00 3.58
847 1015 6.567701 GCATTTCTACACGAATCCAGACAAAA 60.568 38.462 0.00 0.00 0.00 2.44
858 1026 1.335324 CCAGACAAAAGCCTCGCAAAG 60.335 52.381 0.00 0.00 0.00 2.77
909 1078 0.108585 TGCAGAAACACCCTCTCCAC 59.891 55.000 0.00 0.00 0.00 4.02
1230 1399 1.028330 TAGTTCGATCACGCCGTCCT 61.028 55.000 0.00 0.00 39.58 3.85
1273 1442 4.610680 GCCTTCCGATAATTACATGCGTTC 60.611 45.833 0.00 0.00 0.00 3.95
1274 1443 4.750098 CCTTCCGATAATTACATGCGTTCT 59.250 41.667 0.00 0.00 0.00 3.01
1289 1458 1.461888 CGTTCTGGTGCGAAAATCGAC 60.462 52.381 3.61 0.00 43.74 4.20
1290 1459 1.798813 GTTCTGGTGCGAAAATCGACT 59.201 47.619 3.61 0.00 43.74 4.18
1330 1499 1.202177 CGTATGCTTGTTGGCCATGTC 60.202 52.381 6.09 0.54 0.00 3.06
1350 1519 5.955488 TGTCGTTGGTTTGAATTGAGAAAA 58.045 33.333 0.00 0.00 0.00 2.29
1351 1520 6.390721 TGTCGTTGGTTTGAATTGAGAAAAA 58.609 32.000 0.00 0.00 0.00 1.94
1423 1594 8.130469 GCATTTGGACTAGACTAGTTCTACTAC 58.870 40.741 19.63 4.90 39.59 2.73
1495 1666 3.566261 CAGGATGGTGTGTGCGTC 58.434 61.111 0.00 0.00 0.00 5.19
1496 1667 1.301637 CAGGATGGTGTGTGCGTCA 60.302 57.895 0.00 0.00 0.00 4.35
1497 1668 0.884259 CAGGATGGTGTGTGCGTCAA 60.884 55.000 0.00 0.00 0.00 3.18
1498 1669 0.884704 AGGATGGTGTGTGCGTCAAC 60.885 55.000 0.00 0.00 0.00 3.18
1499 1670 1.163420 GGATGGTGTGTGCGTCAACA 61.163 55.000 0.00 0.00 36.92 3.33
1500 1671 0.874390 GATGGTGTGTGCGTCAACAT 59.126 50.000 5.95 5.95 44.49 2.71
1501 1672 1.266718 GATGGTGTGTGCGTCAACATT 59.733 47.619 7.38 0.00 42.31 2.71
1502 1673 1.098869 TGGTGTGTGCGTCAACATTT 58.901 45.000 0.00 0.00 31.49 2.32
1503 1674 1.474478 TGGTGTGTGCGTCAACATTTT 59.526 42.857 0.00 0.00 31.49 1.82
1504 1675 2.094494 TGGTGTGTGCGTCAACATTTTT 60.094 40.909 0.00 0.00 31.49 1.94
1628 1817 4.142138 CCCTCCGTACCATGATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1640 1829 7.201644 CCATGATATAAGAGCGTTTTTGACACT 60.202 37.037 0.00 0.00 0.00 3.55
1641 1830 8.817100 CATGATATAAGAGCGTTTTTGACACTA 58.183 33.333 0.00 0.00 0.00 2.74
1713 1905 5.863935 GCAACCAATTGGAGTTGAATTAGAC 59.136 40.000 31.22 7.40 44.93 2.59
1741 1933 5.891451 GGCACCTATAATTTTGTTCTCACC 58.109 41.667 0.00 0.00 0.00 4.02
1779 1971 9.899226 GATTTTTAGGATCAATATAAGGTGCAC 57.101 33.333 8.80 8.80 0.00 4.57
1889 2081 6.127758 TGCAACTATATTTTCCTGAAATGCGT 60.128 34.615 7.30 0.00 38.40 5.24
2248 2442 4.566278 CCTTCCATTCTGACAATGTCTGGA 60.566 45.833 15.40 15.40 33.42 3.86
2249 2443 4.639078 TCCATTCTGACAATGTCTGGAA 57.361 40.909 16.59 17.55 32.70 3.53
2250 2444 4.582869 TCCATTCTGACAATGTCTGGAAG 58.417 43.478 16.59 7.93 32.70 3.46
2251 2445 4.286808 TCCATTCTGACAATGTCTGGAAGA 59.713 41.667 16.59 8.04 43.69 2.87
2462 2656 3.490348 CCATTCCTGGTGAGACACTTTT 58.510 45.455 0.00 0.00 37.79 2.27
2919 3113 5.769367 AGATCCATTGCAATTGATCAATCG 58.231 37.500 36.13 11.75 39.04 3.34
3147 3341 7.039504 CCCTTCATTTGTGCTTATAAGGCATAT 60.040 37.037 14.28 5.79 41.86 1.78
3247 3441 8.995220 TGTTACTATGGTTGTTTACTCATTGAC 58.005 33.333 0.00 0.00 0.00 3.18
3490 3684 6.128418 GCTCAGTCTTTCAGAGGTTTTCATAC 60.128 42.308 0.00 0.00 31.57 2.39
3531 3729 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
3532 3730 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
3533 3731 3.132289 CGTTCATAGGGGTGAGTGTATGT 59.868 47.826 0.00 0.00 0.00 2.29
3534 3732 4.340097 CGTTCATAGGGGTGAGTGTATGTA 59.660 45.833 0.00 0.00 0.00 2.29
3554 3752 2.612604 ACATATTTGTGAGCGTGCGTA 58.387 42.857 0.00 0.00 33.85 4.42
3749 3949 4.392138 GGTATCGTTCTTCCTTGACTTTGG 59.608 45.833 0.00 0.00 0.00 3.28
3873 4073 4.980573 AGAGGTAGGTATCTCTAGTGCAG 58.019 47.826 0.00 0.00 41.79 4.41
4209 4410 3.256704 TGTATTCCTTGGGTCCTCTGTT 58.743 45.455 0.00 0.00 0.00 3.16
4286 4487 9.733556 ATTATAAACTCAGTAAACCACATGTGA 57.266 29.630 27.46 3.91 0.00 3.58
5258 5469 9.138062 GTTAGACACTGATCAAGCTATCATATG 57.862 37.037 0.00 0.00 35.40 1.78
5259 5470 7.300556 AGACACTGATCAAGCTATCATATGT 57.699 36.000 12.85 12.85 37.60 2.29
5597 5904 3.879892 GGCCAATACTTGACTTCCATCTC 59.120 47.826 0.00 0.00 0.00 2.75
5697 6004 6.358974 AATTTTCACCAATTCAGGTTAGGG 57.641 37.500 0.00 0.00 40.77 3.53
5703 6010 3.858638 ACCAATTCAGGTTAGGGAAGGAT 59.141 43.478 0.00 0.00 39.34 3.24
5713 6022 7.406151 TCAGGTTAGGGAAGGATCTCTTTTATT 59.594 37.037 0.00 0.00 37.61 1.40
5806 6132 1.602323 CAAAGCTTGTACGCCCCCA 60.602 57.895 0.00 0.00 0.00 4.96
5887 6261 7.639039 CATACACTGCATTTAATCCATTACGT 58.361 34.615 0.00 0.00 0.00 3.57
5888 6262 5.879237 ACACTGCATTTAATCCATTACGTG 58.121 37.500 0.00 0.00 0.00 4.49
5929 6303 1.843368 ATCATGAGGTGGCACTTTGG 58.157 50.000 18.45 3.86 0.00 3.28
6062 6436 1.156736 AAATATATCCGCGTGGCAGC 58.843 50.000 11.05 0.00 34.14 5.25
6165 6539 0.610687 TGTACCATGGTCATCGTGCA 59.389 50.000 23.76 2.02 0.00 4.57
6202 6576 1.409427 AGATCGGAAAGCTCGGGTAAG 59.591 52.381 0.00 0.00 0.00 2.34
6203 6577 0.464452 ATCGGAAAGCTCGGGTAAGG 59.536 55.000 0.00 0.00 0.00 2.69
6204 6578 0.901580 TCGGAAAGCTCGGGTAAGGT 60.902 55.000 0.00 0.00 0.00 3.50
6205 6579 0.819582 CGGAAAGCTCGGGTAAGGTA 59.180 55.000 0.00 0.00 0.00 3.08
6207 6581 2.159000 CGGAAAGCTCGGGTAAGGTAAT 60.159 50.000 0.00 0.00 0.00 1.89
6208 6582 3.680754 CGGAAAGCTCGGGTAAGGTAATT 60.681 47.826 0.00 0.00 0.00 1.40
6209 6583 3.875727 GGAAAGCTCGGGTAAGGTAATTC 59.124 47.826 0.00 0.00 0.00 2.17
6213 6606 2.835027 CTCGGGTAAGGTAATTCCAGC 58.165 52.381 0.00 0.00 39.02 4.85
6248 6641 2.551071 GGTAGCCAGAAACTGAGTTGCT 60.551 50.000 11.76 11.76 30.33 3.91
6249 6642 1.602311 AGCCAGAAACTGAGTTGCTG 58.398 50.000 23.59 23.59 45.91 4.41
6250 6643 0.039708 GCCAGAAACTGAGTTGCTGC 60.040 55.000 24.83 17.07 45.22 5.25
6294 6687 4.381292 GCTCAGGAGGAATTTTGGTCAATG 60.381 45.833 0.00 0.00 0.00 2.82
6315 6716 9.990360 TCAATGTTGTAATACAGTTTCTACTCA 57.010 29.630 0.00 0.00 30.26 3.41
6323 6724 4.491234 ACAGTTTCTACTCAGTCGACTG 57.509 45.455 34.76 34.76 45.08 3.51
6334 6735 5.779922 ACTCAGTCGACTGTTGCTAATTAA 58.220 37.500 37.21 18.16 44.12 1.40
6335 6736 5.864474 ACTCAGTCGACTGTTGCTAATTAAG 59.136 40.000 37.21 26.50 44.12 1.85
6337 6738 6.916440 TCAGTCGACTGTTGCTAATTAAGTA 58.084 36.000 37.21 15.95 44.12 2.24
6338 6739 7.544622 TCAGTCGACTGTTGCTAATTAAGTAT 58.455 34.615 37.21 0.39 44.12 2.12
6340 6741 8.656849 CAGTCGACTGTTGCTAATTAAGTATTT 58.343 33.333 32.77 0.00 39.09 1.40
6341 6742 8.656849 AGTCGACTGTTGCTAATTAAGTATTTG 58.343 33.333 19.30 0.00 0.00 2.32
6342 6743 8.653338 GTCGACTGTTGCTAATTAAGTATTTGA 58.347 33.333 8.70 0.00 0.00 2.69
6343 6744 9.378551 TCGACTGTTGCTAATTAAGTATTTGAT 57.621 29.630 0.00 0.00 0.00 2.57
6344 6745 9.638300 CGACTGTTGCTAATTAAGTATTTGATC 57.362 33.333 0.00 0.00 0.00 2.92
6345 6746 9.937175 GACTGTTGCTAATTAAGTATTTGATCC 57.063 33.333 0.00 0.00 0.00 3.36
6352 6753 7.175119 GCTAATTAAGTATTTGATCCCCCAGAC 59.825 40.741 0.00 0.00 0.00 3.51
6361 6762 0.474660 ATCCCCCAGACCATAGAGGC 60.475 60.000 0.00 0.00 43.14 4.70
6367 6768 2.103941 CCCAGACCATAGAGGCTTCTTC 59.896 54.545 2.68 0.00 43.14 2.87
6370 6771 4.442753 CCAGACCATAGAGGCTTCTTCTTC 60.443 50.000 2.68 0.00 43.14 2.87
6377 6782 2.708325 AGAGGCTTCTTCTTCCTTGTGT 59.292 45.455 0.00 0.00 0.00 3.72
6378 6783 3.904339 AGAGGCTTCTTCTTCCTTGTGTA 59.096 43.478 0.00 0.00 0.00 2.90
6379 6784 4.348168 AGAGGCTTCTTCTTCCTTGTGTAA 59.652 41.667 0.00 0.00 0.00 2.41
6380 6785 4.646572 AGGCTTCTTCTTCCTTGTGTAAG 58.353 43.478 0.00 0.00 0.00 2.34
6381 6786 3.189495 GGCTTCTTCTTCCTTGTGTAAGC 59.811 47.826 0.00 0.00 37.85 3.09
6382 6787 3.815401 GCTTCTTCTTCCTTGTGTAAGCA 59.185 43.478 0.00 0.00 38.33 3.91
6383 6788 4.457257 GCTTCTTCTTCCTTGTGTAAGCAT 59.543 41.667 0.00 0.00 38.33 3.79
6384 6789 5.048434 GCTTCTTCTTCCTTGTGTAAGCATT 60.048 40.000 0.00 0.00 38.33 3.56
6385 6790 5.947228 TCTTCTTCCTTGTGTAAGCATTG 57.053 39.130 0.00 0.00 32.40 2.82
6386 6791 4.216257 TCTTCTTCCTTGTGTAAGCATTGC 59.784 41.667 0.00 0.00 32.40 3.56
6387 6792 3.754965 TCTTCCTTGTGTAAGCATTGCT 58.245 40.909 5.03 5.03 42.56 3.91
6412 6817 1.086067 AGCAATCGGATCGCAGTGTG 61.086 55.000 3.44 0.00 0.00 3.82
6428 6836 3.935203 CAGTGTGTGCCTTATAGGTCAAG 59.065 47.826 0.00 0.00 37.80 3.02
6429 6837 3.583086 AGTGTGTGCCTTATAGGTCAAGT 59.417 43.478 0.00 0.00 37.80 3.16
6430 6838 3.933332 GTGTGTGCCTTATAGGTCAAGTC 59.067 47.826 0.00 0.00 37.80 3.01
6431 6839 3.838317 TGTGTGCCTTATAGGTCAAGTCT 59.162 43.478 0.00 0.00 37.80 3.24
6433 6841 4.631813 GTGTGCCTTATAGGTCAAGTCTTG 59.368 45.833 6.21 6.21 37.80 3.02
6434 6842 4.286032 TGTGCCTTATAGGTCAAGTCTTGT 59.714 41.667 12.30 0.00 37.80 3.16
6435 6843 4.631813 GTGCCTTATAGGTCAAGTCTTGTG 59.368 45.833 12.30 0.00 37.80 3.33
6436 6844 4.530553 TGCCTTATAGGTCAAGTCTTGTGA 59.469 41.667 12.30 0.00 37.80 3.58
6437 6845 5.012664 TGCCTTATAGGTCAAGTCTTGTGAA 59.987 40.000 12.30 0.00 37.80 3.18
6457 6876 4.202141 TGAAACATGCTCAAAACCCTCAAG 60.202 41.667 0.00 0.00 0.00 3.02
6484 6904 4.111916 CGTTGCTGAAAACTCCATTTTGT 58.888 39.130 0.00 0.00 40.73 2.83
6485 6905 4.566360 CGTTGCTGAAAACTCCATTTTGTT 59.434 37.500 0.00 0.00 40.73 2.83
6486 6906 5.500610 CGTTGCTGAAAACTCCATTTTGTTG 60.501 40.000 0.00 0.00 40.73 3.33
6503 6923 2.427812 TGTTGATCTGTTCCGCCGTATA 59.572 45.455 0.00 0.00 0.00 1.47
6504 6924 3.050619 GTTGATCTGTTCCGCCGTATAG 58.949 50.000 0.00 0.00 0.00 1.31
6505 6925 2.304092 TGATCTGTTCCGCCGTATAGT 58.696 47.619 0.00 0.00 0.00 2.12
6509 6929 5.884232 TGATCTGTTCCGCCGTATAGTATAT 59.116 40.000 0.00 0.00 0.00 0.86
6510 6930 5.556355 TCTGTTCCGCCGTATAGTATATG 57.444 43.478 2.76 2.76 0.00 1.78
6511 6931 5.005740 TCTGTTCCGCCGTATAGTATATGT 58.994 41.667 8.29 0.00 0.00 2.29
6512 6932 5.474532 TCTGTTCCGCCGTATAGTATATGTT 59.525 40.000 8.29 0.00 0.00 2.71
6513 6933 6.654582 TCTGTTCCGCCGTATAGTATATGTTA 59.345 38.462 8.29 0.00 0.00 2.41
6514 6934 6.611381 TGTTCCGCCGTATAGTATATGTTAC 58.389 40.000 8.29 0.00 0.00 2.50
6515 6935 5.469373 TCCGCCGTATAGTATATGTTACG 57.531 43.478 8.29 8.46 37.70 3.18
6516 6936 4.935205 TCCGCCGTATAGTATATGTTACGT 59.065 41.667 8.29 0.00 36.57 3.57
6517 6937 5.023920 CCGCCGTATAGTATATGTTACGTG 58.976 45.833 0.00 0.97 36.57 4.49
6518 6938 5.023920 CGCCGTATAGTATATGTTACGTGG 58.976 45.833 0.00 0.00 36.57 4.94
6519 6939 5.390885 CGCCGTATAGTATATGTTACGTGGT 60.391 44.000 0.00 0.00 36.57 4.16
6520 6940 6.381801 GCCGTATAGTATATGTTACGTGGTT 58.618 40.000 0.00 0.00 36.57 3.67
6521 6941 6.863126 GCCGTATAGTATATGTTACGTGGTTT 59.137 38.462 0.00 0.00 36.57 3.27
6523 6943 7.148918 CCGTATAGTATATGTTACGTGGTTTGC 60.149 40.741 0.00 0.00 36.57 3.68
6524 6944 7.592533 CGTATAGTATATGTTACGTGGTTTGCT 59.407 37.037 0.00 0.00 34.32 3.91
6525 6945 9.897744 GTATAGTATATGTTACGTGGTTTGCTA 57.102 33.333 0.00 0.00 0.00 3.49
6527 6947 6.870769 AGTATATGTTACGTGGTTTGCTAGT 58.129 36.000 0.00 0.00 0.00 2.57
6528 6948 7.999679 AGTATATGTTACGTGGTTTGCTAGTA 58.000 34.615 0.00 0.00 0.00 1.82
6529 6949 7.917505 AGTATATGTTACGTGGTTTGCTAGTAC 59.082 37.037 0.00 0.00 0.00 2.73
6531 6951 4.549458 TGTTACGTGGTTTGCTAGTACTC 58.451 43.478 0.00 0.00 0.00 2.59
6532 6952 2.342910 ACGTGGTTTGCTAGTACTCG 57.657 50.000 0.00 0.00 0.00 4.18
6534 6954 1.983605 CGTGGTTTGCTAGTACTCGTG 59.016 52.381 0.00 0.00 0.00 4.35
6535 6955 2.606308 CGTGGTTTGCTAGTACTCGTGT 60.606 50.000 0.00 0.00 0.00 4.49
6539 6959 6.324819 GTGGTTTGCTAGTACTCGTGTATTA 58.675 40.000 0.00 0.47 0.00 0.98
6547 7000 8.464404 TGCTAGTACTCGTGTATTAGTGAAAAT 58.536 33.333 21.04 0.00 39.60 1.82
6551 7004 8.932791 AGTACTCGTGTATTAGTGAAAATTTGG 58.067 33.333 0.02 0.00 0.00 3.28
6560 7013 7.826260 ATTAGTGAAAATTTGGCCAAATACG 57.174 32.000 37.45 0.00 39.88 3.06
6561 7014 5.208463 AGTGAAAATTTGGCCAAATACGT 57.792 34.783 37.45 26.49 39.88 3.57
6562 7015 6.334102 AGTGAAAATTTGGCCAAATACGTA 57.666 33.333 37.45 23.52 39.88 3.57
6563 7016 6.153756 AGTGAAAATTTGGCCAAATACGTAC 58.846 36.000 37.45 30.42 39.88 3.67
6564 7017 5.921408 GTGAAAATTTGGCCAAATACGTACA 59.079 36.000 37.45 27.89 39.88 2.90
6565 7018 6.588373 GTGAAAATTTGGCCAAATACGTACAT 59.412 34.615 37.45 21.13 39.88 2.29
6566 7019 6.587990 TGAAAATTTGGCCAAATACGTACATG 59.412 34.615 37.45 0.00 39.88 3.21
6569 7022 5.455056 TTTGGCCAAATACGTACATGTTT 57.545 34.783 27.13 0.00 0.00 2.83
6570 7023 4.427096 TGGCCAAATACGTACATGTTTG 57.573 40.909 0.61 10.91 32.24 2.93
6573 7026 3.191791 GCCAAATACGTACATGTTTGGGT 59.808 43.478 27.47 10.20 45.89 4.51
6574 7027 4.395542 GCCAAATACGTACATGTTTGGGTA 59.604 41.667 27.47 11.69 45.89 3.69
6575 7028 5.066764 GCCAAATACGTACATGTTTGGGTAT 59.933 40.000 27.47 13.06 45.89 2.73
6576 7029 6.260493 GCCAAATACGTACATGTTTGGGTATA 59.740 38.462 27.47 1.03 45.89 1.47
6577 7030 7.040961 GCCAAATACGTACATGTTTGGGTATAT 60.041 37.037 27.47 2.96 45.89 0.86
6581 7034 6.687081 ACGTACATGTTTGGGTATATTTGG 57.313 37.500 2.30 0.00 0.00 3.28
6582 7035 6.181908 ACGTACATGTTTGGGTATATTTGGT 58.818 36.000 2.30 0.00 0.00 3.67
6583 7036 6.094325 ACGTACATGTTTGGGTATATTTGGTG 59.906 38.462 2.30 0.00 0.00 4.17
6584 7037 5.930837 ACATGTTTGGGTATATTTGGTGG 57.069 39.130 0.00 0.00 0.00 4.61
6585 7038 4.161377 ACATGTTTGGGTATATTTGGTGGC 59.839 41.667 0.00 0.00 0.00 5.01
6586 7039 2.755655 TGTTTGGGTATATTTGGTGGCG 59.244 45.455 0.00 0.00 0.00 5.69
6587 7040 3.018149 GTTTGGGTATATTTGGTGGCGA 58.982 45.455 0.00 0.00 0.00 5.54
6588 7041 3.367646 TTGGGTATATTTGGTGGCGAA 57.632 42.857 0.00 0.00 0.00 4.70
6589 7042 3.586470 TGGGTATATTTGGTGGCGAAT 57.414 42.857 0.00 0.00 0.00 3.34
6590 7043 3.218453 TGGGTATATTTGGTGGCGAATG 58.782 45.455 0.00 0.00 0.00 2.67
6591 7044 2.556622 GGGTATATTTGGTGGCGAATGG 59.443 50.000 0.00 0.00 0.00 3.16
6592 7045 3.219281 GGTATATTTGGTGGCGAATGGT 58.781 45.455 0.00 0.00 0.00 3.55
6593 7046 3.252458 GGTATATTTGGTGGCGAATGGTC 59.748 47.826 0.00 0.00 0.00 4.02
6594 7047 1.757682 TATTTGGTGGCGAATGGTCC 58.242 50.000 0.00 0.00 0.00 4.46
6595 7048 0.251564 ATTTGGTGGCGAATGGTCCA 60.252 50.000 0.00 0.00 0.00 4.02
6598 7051 4.397348 GTGGCGAATGGTCCACTT 57.603 55.556 0.00 0.00 46.90 3.16
6599 7052 1.875963 GTGGCGAATGGTCCACTTG 59.124 57.895 0.00 0.00 46.90 3.16
6600 7053 0.605319 GTGGCGAATGGTCCACTTGA 60.605 55.000 0.00 0.00 46.90 3.02
6637 7095 2.095969 TGAAACGTGCGAAAATAGGCAG 60.096 45.455 0.00 0.00 40.32 4.85
6703 7162 1.970917 GCTTGTGGATTCGTCGCCTG 61.971 60.000 0.00 0.00 0.00 4.85
6732 7191 4.312231 CGCGGCGGTGGCATTATG 62.312 66.667 15.84 0.00 42.47 1.90
6755 7214 1.270358 GGAGAAGGACGTATCATGGGC 60.270 57.143 0.00 0.00 0.00 5.36
6757 7216 1.689273 AGAAGGACGTATCATGGGCTC 59.311 52.381 0.00 0.00 0.00 4.70
6758 7217 1.412710 GAAGGACGTATCATGGGCTCA 59.587 52.381 0.00 0.00 0.00 4.26
6759 7218 1.722034 AGGACGTATCATGGGCTCAT 58.278 50.000 0.00 0.00 0.00 2.90
6766 7225 2.836360 CATGGGCTCATGGGTGGC 60.836 66.667 19.46 0.00 45.19 5.01
6796 7255 3.125376 GCCGCTCTCCCAATCCCAT 62.125 63.158 0.00 0.00 0.00 4.00
6797 7256 1.228063 CCGCTCTCCCAATCCCATG 60.228 63.158 0.00 0.00 0.00 3.66
6798 7257 1.228063 CGCTCTCCCAATCCCATGG 60.228 63.158 4.14 4.14 40.35 3.66
6799 7258 1.925888 GCTCTCCCAATCCCATGGT 59.074 57.895 11.73 0.00 38.91 3.55
6800 7259 1.140312 GCTCTCCCAATCCCATGGTA 58.860 55.000 11.73 0.00 38.91 3.25
6801 7260 1.072965 GCTCTCCCAATCCCATGGTAG 59.927 57.143 11.73 0.00 38.91 3.18
6965 7449 0.101219 CAAGAGGCGGGCTTAATTGC 59.899 55.000 5.24 0.00 0.00 3.56
6966 7450 1.376609 AAGAGGCGGGCTTAATTGCG 61.377 55.000 5.24 0.00 0.00 4.85
6979 7463 0.179137 AATTGCGTGAGAGCGATCGA 60.179 50.000 21.57 0.00 40.15 3.59
6991 7475 0.463833 GCGATCGAAGTGGGGGAATT 60.464 55.000 21.57 0.00 0.00 2.17
6992 7476 1.299541 CGATCGAAGTGGGGGAATTG 58.700 55.000 10.26 0.00 0.00 2.32
6993 7477 1.134521 CGATCGAAGTGGGGGAATTGA 60.135 52.381 10.26 0.00 0.00 2.57
6994 7478 2.485479 CGATCGAAGTGGGGGAATTGAT 60.485 50.000 10.26 0.00 0.00 2.57
7010 7494 1.456296 TGATGTGCTCATGTTCCTGC 58.544 50.000 5.89 0.00 34.06 4.85
7038 7522 1.128188 GGCCCGGACAGGAGGAATAT 61.128 60.000 0.73 0.00 45.00 1.28
7039 7523 1.640917 GCCCGGACAGGAGGAATATA 58.359 55.000 0.73 0.00 45.00 0.86
7040 7524 2.188817 GCCCGGACAGGAGGAATATAT 58.811 52.381 0.73 0.00 45.00 0.86
7047 7531 7.309255 CCCGGACAGGAGGAATATATTATATCG 60.309 44.444 0.73 0.00 45.00 2.92
7055 7539 9.046296 GGAGGAATATATTATATCGCCAAAGTG 57.954 37.037 0.00 0.00 0.00 3.16
7056 7540 9.601217 GAGGAATATATTATATCGCCAAAGTGT 57.399 33.333 0.00 0.00 0.00 3.55
7146 7632 0.896923 CAACTGCTCTGCTCTCCTCT 59.103 55.000 0.00 0.00 0.00 3.69
7170 7666 4.969196 ACGACGCAGCCCAGTGTG 62.969 66.667 0.00 0.00 31.30 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.944376 ATCAGTACTAAATGTTGAATGTGTACT 57.056 29.630 0.00 0.00 39.58 2.73
29 30 8.644619 CATGCTTTTGATGTACTTTCAAATCAG 58.355 33.333 18.79 15.95 41.36 2.90
67 68 6.553953 TGGCATCCTGTTTAGTAATGTCTA 57.446 37.500 0.00 0.00 0.00 2.59
71 72 5.184864 TGGTTTGGCATCCTGTTTAGTAATG 59.815 40.000 9.91 0.00 0.00 1.90
83 84 1.134995 GCTAAGCTTGGTTTGGCATCC 60.135 52.381 9.86 0.00 31.51 3.51
99 100 6.374053 TGATGTGCAGCAACTTAATTAGCTAA 59.626 34.615 8.99 8.99 35.19 3.09
114 115 4.952262 TCTTATGAAGTTGATGTGCAGC 57.048 40.909 0.00 0.00 0.00 5.25
118 119 9.338291 CATGTTCTTTCTTATGAAGTTGATGTG 57.662 33.333 0.00 0.00 33.28 3.21
125 126 7.872993 TCTCGTTCATGTTCTTTCTTATGAAGT 59.127 33.333 0.00 0.00 39.43 3.01
139 140 6.025749 TGTATGTCTTCTCTCGTTCATGTT 57.974 37.500 0.00 0.00 0.00 2.71
147 148 5.635280 TGCTCTTTTTGTATGTCTTCTCTCG 59.365 40.000 0.00 0.00 0.00 4.04
163 164 3.070018 CGGTCTCTTCATGTGCTCTTTT 58.930 45.455 0.00 0.00 0.00 2.27
197 198 4.282449 GCTCCTCCCTTACTAATCCTCTTC 59.718 50.000 0.00 0.00 0.00 2.87
213 214 1.690633 TCCATCCCACAGCTCCTCC 60.691 63.158 0.00 0.00 0.00 4.30
220 221 1.150081 GCCCATCTCCATCCCACAG 59.850 63.158 0.00 0.00 0.00 3.66
223 224 1.648302 CCAAGCCCATCTCCATCCCA 61.648 60.000 0.00 0.00 0.00 4.37
237 238 0.240145 GTCTACGTTTTGCCCCAAGC 59.760 55.000 0.00 0.00 44.14 4.01
240 241 1.972795 AGTAGTCTACGTTTTGCCCCA 59.027 47.619 4.34 0.00 0.00 4.96
242 243 2.257034 CGAGTAGTCTACGTTTTGCCC 58.743 52.381 4.34 0.00 0.00 5.36
259 260 3.745975 TGTCTAAAGGCAATCAACACGAG 59.254 43.478 0.00 0.00 0.00 4.18
262 263 5.634896 CAGATGTCTAAAGGCAATCAACAC 58.365 41.667 0.00 0.00 0.00 3.32
302 303 6.035435 CACAAATCTGACGAGAGGAGTTATTG 59.965 42.308 0.00 0.00 0.00 1.90
317 318 0.409092 ACCATGGCCCACAAATCTGA 59.591 50.000 13.04 0.00 0.00 3.27
363 364 7.643612 TCTCAGGGTGAAGTACTCCTATATA 57.356 40.000 0.00 0.00 31.33 0.86
380 381 9.921637 GAAGTACTCTATATTCATTTCTCAGGG 57.078 37.037 0.00 0.00 0.00 4.45
395 396 6.897966 TCATTTCTCAGGGTGAAGTACTCTAT 59.102 38.462 0.00 0.00 38.32 1.98
396 397 6.253758 TCATTTCTCAGGGTGAAGTACTCTA 58.746 40.000 0.00 0.00 38.32 2.43
397 398 5.087323 TCATTTCTCAGGGTGAAGTACTCT 58.913 41.667 0.00 0.00 42.22 3.24
398 399 5.407407 TCATTTCTCAGGGTGAAGTACTC 57.593 43.478 0.00 0.00 0.00 2.59
399 400 5.825593 TTCATTTCTCAGGGTGAAGTACT 57.174 39.130 0.00 0.00 0.00 2.73
400 401 9.262358 GTATATTCATTTCTCAGGGTGAAGTAC 57.738 37.037 0.00 0.00 34.45 2.73
401 402 8.429641 GGTATATTCATTTCTCAGGGTGAAGTA 58.570 37.037 0.00 0.00 34.45 2.24
402 403 7.127955 AGGTATATTCATTTCTCAGGGTGAAGT 59.872 37.037 0.00 0.00 34.45 3.01
403 404 7.443575 CAGGTATATTCATTTCTCAGGGTGAAG 59.556 40.741 0.00 0.00 34.45 3.02
404 405 7.127186 TCAGGTATATTCATTTCTCAGGGTGAA 59.873 37.037 0.00 0.00 35.33 3.18
405 406 6.615316 TCAGGTATATTCATTTCTCAGGGTGA 59.385 38.462 0.00 0.00 0.00 4.02
406 407 6.708054 GTCAGGTATATTCATTTCTCAGGGTG 59.292 42.308 0.00 0.00 0.00 4.61
407 408 6.463049 CGTCAGGTATATTCATTTCTCAGGGT 60.463 42.308 0.00 0.00 0.00 4.34
408 409 5.928839 CGTCAGGTATATTCATTTCTCAGGG 59.071 44.000 0.00 0.00 0.00 4.45
409 410 5.406780 GCGTCAGGTATATTCATTTCTCAGG 59.593 44.000 0.00 0.00 0.00 3.86
410 411 5.406780 GGCGTCAGGTATATTCATTTCTCAG 59.593 44.000 0.00 0.00 0.00 3.35
411 412 5.070446 AGGCGTCAGGTATATTCATTTCTCA 59.930 40.000 0.00 0.00 0.00 3.27
412 413 5.542779 AGGCGTCAGGTATATTCATTTCTC 58.457 41.667 0.00 0.00 0.00 2.87
413 414 5.552870 AGGCGTCAGGTATATTCATTTCT 57.447 39.130 0.00 0.00 0.00 2.52
414 415 6.456501 ACTAGGCGTCAGGTATATTCATTTC 58.543 40.000 0.00 0.00 0.00 2.17
415 416 6.420913 ACTAGGCGTCAGGTATATTCATTT 57.579 37.500 0.00 0.00 0.00 2.32
416 417 7.396339 TCATACTAGGCGTCAGGTATATTCATT 59.604 37.037 4.95 0.00 0.00 2.57
417 418 6.890268 TCATACTAGGCGTCAGGTATATTCAT 59.110 38.462 4.95 0.00 0.00 2.57
418 419 6.243148 TCATACTAGGCGTCAGGTATATTCA 58.757 40.000 4.95 0.00 0.00 2.57
419 420 6.754702 TCATACTAGGCGTCAGGTATATTC 57.245 41.667 4.95 0.00 0.00 1.75
420 421 7.719871 ATTCATACTAGGCGTCAGGTATATT 57.280 36.000 4.95 0.00 0.00 1.28
421 422 7.832685 TGTATTCATACTAGGCGTCAGGTATAT 59.167 37.037 4.95 0.80 34.41 0.86
422 423 7.170277 TGTATTCATACTAGGCGTCAGGTATA 58.830 38.462 4.95 0.00 34.41 1.47
432 433 5.386958 TCCGTGATGTATTCATACTAGGC 57.613 43.478 0.00 0.00 36.54 3.93
496 497 4.025730 CCGATAAATCACGAGTGAACATGG 60.026 45.833 10.15 4.51 43.58 3.66
548 549 9.613957 CGGTAAGAAGTGACTATAATACTCATG 57.386 37.037 0.00 0.00 0.00 3.07
549 550 8.794553 CCGGTAAGAAGTGACTATAATACTCAT 58.205 37.037 0.00 0.00 0.00 2.90
550 551 7.994911 TCCGGTAAGAAGTGACTATAATACTCA 59.005 37.037 0.00 0.00 0.00 3.41
581 747 1.068588 GTTTGAGCAACCCCAAAGTCC 59.931 52.381 0.00 0.00 33.52 3.85
613 779 7.148356 CCCCAAAGTATCGTTATGATCATCATG 60.148 40.741 12.53 7.14 37.70 3.07
627 793 3.616219 TCCAATGAACCCCAAAGTATCG 58.384 45.455 0.00 0.00 0.00 2.92
658 824 2.193127 TGACCAAATCTATCCCCGTGT 58.807 47.619 0.00 0.00 0.00 4.49
661 827 3.668447 CTGATGACCAAATCTATCCCCG 58.332 50.000 0.00 0.00 0.00 5.73
666 832 6.204301 CGAATTGAGCTGATGACCAAATCTAT 59.796 38.462 0.00 0.00 0.00 1.98
681 847 1.442769 AATGACGCACGAATTGAGCT 58.557 45.000 0.00 0.00 31.26 4.09
690 856 4.832019 TGATGCTATAAAAATGACGCACG 58.168 39.130 0.00 0.00 0.00 5.34
708 874 8.511465 ACTTGACGAGAAAAATCAATTTGATG 57.489 30.769 12.50 1.52 37.15 3.07
727 893 2.288666 TCACAGGTGCTTGAACTTGAC 58.711 47.619 0.00 0.00 31.92 3.18
743 909 9.173021 CCTTTATACAAGTCCATTAACATCACA 57.827 33.333 0.00 0.00 0.00 3.58
816 983 0.174845 TCGTGTAGAAATGCTCCCCG 59.825 55.000 0.00 0.00 0.00 5.73
858 1026 2.092323 AGCAAAGAGGGGTAATTTCGC 58.908 47.619 0.00 0.00 0.00 4.70
871 1040 1.885887 CAATTTGTCCGGGAGCAAAGA 59.114 47.619 21.04 7.90 37.89 2.52
1230 1399 2.361104 GCAAAGCCATCGGGGACA 60.361 61.111 0.00 0.00 40.01 4.02
1248 1417 2.159627 GCATGTAATTATCGGAAGGCGG 59.840 50.000 0.00 0.00 0.00 6.13
1249 1418 2.159841 CGCATGTAATTATCGGAAGGCG 60.160 50.000 0.00 0.00 34.66 5.52
1273 1442 2.930040 ACATAGTCGATTTTCGCACCAG 59.070 45.455 0.00 0.00 40.21 4.00
1274 1443 2.967362 ACATAGTCGATTTTCGCACCA 58.033 42.857 0.00 0.00 40.21 4.17
1289 1458 3.242091 CGTCTCAACCGCATCAAACATAG 60.242 47.826 0.00 0.00 0.00 2.23
1290 1459 2.670905 CGTCTCAACCGCATCAAACATA 59.329 45.455 0.00 0.00 0.00 2.29
1423 1594 5.830912 TCAAAATAGAACAAACAGCACCAG 58.169 37.500 0.00 0.00 0.00 4.00
1489 1660 2.281234 CCACACAAAAATGTTGACGCAC 59.719 45.455 0.00 0.00 0.00 5.34
1490 1661 2.164422 TCCACACAAAAATGTTGACGCA 59.836 40.909 0.00 0.00 0.00 5.24
1491 1662 2.803451 TCCACACAAAAATGTTGACGC 58.197 42.857 0.00 0.00 0.00 5.19
1492 1663 4.206814 CACATCCACACAAAAATGTTGACG 59.793 41.667 0.00 0.00 30.16 4.35
1493 1664 4.025813 GCACATCCACACAAAAATGTTGAC 60.026 41.667 0.00 0.00 30.16 3.18
1494 1665 4.118410 GCACATCCACACAAAAATGTTGA 58.882 39.130 0.00 0.00 30.16 3.18
1495 1666 4.025563 CAGCACATCCACACAAAAATGTTG 60.026 41.667 0.00 0.00 30.16 3.33
1496 1667 4.121317 CAGCACATCCACACAAAAATGTT 58.879 39.130 0.00 0.00 30.16 2.71
1497 1668 3.384146 TCAGCACATCCACACAAAAATGT 59.616 39.130 0.00 0.00 32.73 2.71
1498 1669 3.979948 TCAGCACATCCACACAAAAATG 58.020 40.909 0.00 0.00 0.00 2.32
1499 1670 4.039488 ACATCAGCACATCCACACAAAAAT 59.961 37.500 0.00 0.00 0.00 1.82
1500 1671 3.384146 ACATCAGCACATCCACACAAAAA 59.616 39.130 0.00 0.00 0.00 1.94
1501 1672 2.957680 ACATCAGCACATCCACACAAAA 59.042 40.909 0.00 0.00 0.00 2.44
1502 1673 2.293955 CACATCAGCACATCCACACAAA 59.706 45.455 0.00 0.00 0.00 2.83
1503 1674 1.881324 CACATCAGCACATCCACACAA 59.119 47.619 0.00 0.00 0.00 3.33
1504 1675 1.525941 CACATCAGCACATCCACACA 58.474 50.000 0.00 0.00 0.00 3.72
1628 1817 7.550064 CTAGTACTCACTAGTGTCAAAAACG 57.450 40.000 21.99 3.38 46.30 3.60
1640 1829 7.179966 TGGAACTCCATTTCTAGTACTCACTA 58.820 38.462 0.00 0.00 42.01 2.74
1641 1830 6.017192 TGGAACTCCATTTCTAGTACTCACT 58.983 40.000 0.00 0.00 42.01 3.41
1690 1882 7.086376 CAGTCTAATTCAACTCCAATTGGTTG 58.914 38.462 23.76 20.33 42.66 3.77
1713 1905 3.642141 ACAAAATTATAGGTGCCCCCAG 58.358 45.455 0.00 0.00 34.66 4.45
1741 1933 6.434028 TGATCCTAAAAATCCTGAAACCTGTG 59.566 38.462 0.00 0.00 0.00 3.66
1779 1971 4.134379 AGATGGTAAGACACTGCATCAG 57.866 45.455 0.00 0.00 37.52 2.90
1889 2081 2.380064 ATGTGACCAAAGGGAAGCAA 57.620 45.000 0.00 0.00 38.05 3.91
2174 2368 8.907222 AAATGAAGCCAAACTGATAAAAATGT 57.093 26.923 0.00 0.00 0.00 2.71
2248 2442 4.210331 ACAAGCAAATCAGTTCCAGTCTT 58.790 39.130 0.00 0.00 0.00 3.01
2249 2443 3.825328 ACAAGCAAATCAGTTCCAGTCT 58.175 40.909 0.00 0.00 0.00 3.24
2250 2444 4.574599 AACAAGCAAATCAGTTCCAGTC 57.425 40.909 0.00 0.00 0.00 3.51
2251 2445 5.239525 GTCTAACAAGCAAATCAGTTCCAGT 59.760 40.000 0.00 0.00 0.00 4.00
2252 2446 5.471456 AGTCTAACAAGCAAATCAGTTCCAG 59.529 40.000 0.00 0.00 0.00 3.86
2253 2447 5.376625 AGTCTAACAAGCAAATCAGTTCCA 58.623 37.500 0.00 0.00 0.00 3.53
2254 2448 5.948992 AGTCTAACAAGCAAATCAGTTCC 57.051 39.130 0.00 0.00 0.00 3.62
2255 2449 8.224437 GTCTAAGTCTAACAAGCAAATCAGTTC 58.776 37.037 0.00 0.00 0.00 3.01
2462 2656 7.978414 TGTTTGTTAGCAATGTGAAAAGAATGA 59.022 29.630 0.00 0.00 34.18 2.57
2983 3177 2.957402 TGGAGGCAAAACTCATCAGT 57.043 45.000 0.00 0.00 39.27 3.41
3226 3420 6.721571 ACGTCAATGAGTAAACAACCATAG 57.278 37.500 0.00 0.00 0.00 2.23
3247 3441 5.546621 TCATATTCCCTCCTCCTTTAACG 57.453 43.478 0.00 0.00 0.00 3.18
3319 3513 6.879458 CCTATTCTTGTGGTTTGCTAGTAACT 59.121 38.462 0.00 0.00 0.00 2.24
3388 3582 1.064952 GGTTCTGTGTTGTGGTTTCCG 59.935 52.381 0.00 0.00 0.00 4.30
3490 3684 1.745115 CACATGCACACCCTACCCG 60.745 63.158 0.00 0.00 0.00 5.28
3531 3729 2.347150 CGCACGCTCACAAATATGTACA 59.653 45.455 0.00 0.00 37.82 2.90
3532 3730 2.347452 ACGCACGCTCACAAATATGTAC 59.653 45.455 0.00 0.00 37.82 2.90
3533 3731 2.612604 ACGCACGCTCACAAATATGTA 58.387 42.857 0.00 0.00 37.82 2.29
3534 3732 1.438651 ACGCACGCTCACAAATATGT 58.561 45.000 0.00 0.00 41.61 2.29
3577 3776 4.898829 TGGTTTCTCAATTGTGTGTCTG 57.101 40.909 5.13 0.00 0.00 3.51
3579 3778 7.199766 TGTAATTGGTTTCTCAATTGTGTGTC 58.800 34.615 5.13 0.00 44.26 3.67
3581 3780 8.592105 ATTGTAATTGGTTTCTCAATTGTGTG 57.408 30.769 5.13 0.00 44.26 3.82
3679 3879 7.165812 GCACATATTTCCGATTTGTCATGTAAC 59.834 37.037 0.00 0.00 0.00 2.50
3683 3883 5.456497 GTGCACATATTTCCGATTTGTCATG 59.544 40.000 13.17 0.00 0.00 3.07
3749 3949 7.057894 TCTAGAAGAGGATCCAGAAGTTAGTC 58.942 42.308 15.82 0.00 33.66 2.59
3873 4073 8.320396 AGATTGACATAAGCACATGATATCAC 57.680 34.615 7.78 0.00 0.00 3.06
4941 5151 1.484038 TGGCCATTAAAGGTCCATGC 58.516 50.000 0.00 0.00 32.37 4.06
5258 5469 3.051081 AGTGAGCAGACCAATTGAGAC 57.949 47.619 7.12 0.00 0.00 3.36
5259 5470 3.777106 AAGTGAGCAGACCAATTGAGA 57.223 42.857 7.12 0.00 0.00 3.27
5288 5499 3.354678 CCGTTTGGGAGGCTTGTG 58.645 61.111 0.00 0.00 38.47 3.33
5311 5522 1.271656 AGACTCTGTTCCGTTAACCCG 59.728 52.381 0.00 0.00 37.27 5.28
5597 5904 0.868406 GCTCCGTCACAGAAAACTGG 59.132 55.000 0.00 0.00 0.00 4.00
5713 6022 6.544197 TCAAGCCTCAACAGTAACAACATAAA 59.456 34.615 0.00 0.00 0.00 1.40
5732 6041 0.604780 TCTCAAGTGCAGCTCAAGCC 60.605 55.000 0.00 0.00 43.38 4.35
5885 6259 1.902840 ACAAACGAAAAAGTGCCACG 58.097 45.000 0.00 0.00 0.00 4.94
5887 6261 4.181309 AGAAACAAACGAAAAAGTGCCA 57.819 36.364 0.00 0.00 0.00 4.92
5888 6262 6.474102 TGATAAGAAACAAACGAAAAAGTGCC 59.526 34.615 0.00 0.00 0.00 5.01
5889 6263 7.444558 TGATAAGAAACAAACGAAAAAGTGC 57.555 32.000 0.00 0.00 0.00 4.40
5890 6264 9.232082 TCATGATAAGAAACAAACGAAAAAGTG 57.768 29.630 0.00 0.00 0.00 3.16
5891 6265 9.450807 CTCATGATAAGAAACAAACGAAAAAGT 57.549 29.630 0.00 0.00 0.00 2.66
5892 6266 8.905702 CCTCATGATAAGAAACAAACGAAAAAG 58.094 33.333 0.00 0.00 0.00 2.27
5893 6267 8.410141 ACCTCATGATAAGAAACAAACGAAAAA 58.590 29.630 0.00 0.00 0.00 1.94
5929 6303 6.978080 TGTTTTCTTCAGTAAAATCAACCTGC 59.022 34.615 0.00 0.00 0.00 4.85
6062 6436 6.017109 CCATGGGTTAGAAATTTCTATCACCG 60.017 42.308 27.57 20.50 39.74 4.94
6165 6539 5.365025 TCCGATCTCCATCTTCTTCTTGATT 59.635 40.000 0.00 0.00 0.00 2.57
6202 6576 0.034089 ACTGGCTGGCTGGAATTACC 60.034 55.000 12.46 0.00 39.54 2.85
6203 6577 2.565841 CTACTGGCTGGCTGGAATTAC 58.434 52.381 12.46 0.00 0.00 1.89
6204 6578 1.490490 CCTACTGGCTGGCTGGAATTA 59.510 52.381 12.46 0.00 0.00 1.40
6205 6579 0.257039 CCTACTGGCTGGCTGGAATT 59.743 55.000 12.46 0.00 0.00 2.17
6207 6581 1.229496 TCCTACTGGCTGGCTGGAA 60.229 57.895 12.46 0.02 0.00 3.53
6208 6582 1.990060 GTCCTACTGGCTGGCTGGA 60.990 63.158 12.46 2.93 0.00 3.86
6209 6583 2.586792 GTCCTACTGGCTGGCTGG 59.413 66.667 12.46 5.19 0.00 4.85
6213 6606 2.017559 GCTACCGTCCTACTGGCTGG 62.018 65.000 0.00 0.00 34.70 4.85
6263 6656 0.975040 TTCCTCCTGAGCTCTCTGCC 60.975 60.000 16.19 0.00 44.23 4.85
6294 6687 8.019669 TCGACTGAGTAGAAACTGTATTACAAC 58.980 37.037 0.00 0.00 35.56 3.32
6308 6709 2.505405 AGCAACAGTCGACTGAGTAGA 58.495 47.619 43.55 0.00 46.59 2.59
6315 6716 8.656849 CAAATACTTAATTAGCAACAGTCGACT 58.343 33.333 13.58 13.58 0.00 4.18
6323 6724 7.286775 TGGGGGATCAAATACTTAATTAGCAAC 59.713 37.037 0.00 0.00 0.00 4.17
6334 6735 2.858644 TGGTCTGGGGGATCAAATACT 58.141 47.619 0.00 0.00 31.22 2.12
6335 6736 3.884037 ATGGTCTGGGGGATCAAATAC 57.116 47.619 0.00 0.00 38.70 1.89
6337 6738 3.654806 CTCTATGGTCTGGGGGATCAAAT 59.345 47.826 0.00 0.00 38.70 2.32
6338 6739 3.048600 CTCTATGGTCTGGGGGATCAAA 58.951 50.000 0.00 0.00 38.70 2.69
6340 6741 1.132721 CCTCTATGGTCTGGGGGATCA 60.133 57.143 0.00 0.00 39.64 2.92
6341 6742 1.650528 CCTCTATGGTCTGGGGGATC 58.349 60.000 0.00 0.00 0.00 3.36
6342 6743 0.474660 GCCTCTATGGTCTGGGGGAT 60.475 60.000 0.00 0.00 38.35 3.85
6343 6744 1.074471 GCCTCTATGGTCTGGGGGA 60.074 63.158 0.00 0.00 38.35 4.81
6344 6745 0.695803 AAGCCTCTATGGTCTGGGGG 60.696 60.000 0.00 0.00 38.35 5.40
6345 6746 0.761802 GAAGCCTCTATGGTCTGGGG 59.238 60.000 0.00 0.00 38.35 4.96
6352 6753 4.080638 ACAAGGAAGAAGAAGCCTCTATGG 60.081 45.833 0.00 0.00 39.35 2.74
6361 6762 6.376978 CAATGCTTACACAAGGAAGAAGAAG 58.623 40.000 0.00 0.00 35.55 2.85
6388 6793 0.179086 TGCGATCCGATTGCTTAGCA 60.179 50.000 19.36 1.39 40.43 3.49
6389 6794 0.510359 CTGCGATCCGATTGCTTAGC 59.490 55.000 19.36 0.00 40.43 3.09
6390 6795 1.524355 CACTGCGATCCGATTGCTTAG 59.476 52.381 19.36 12.63 40.43 2.18
6412 6817 4.631813 CACAAGACTTGACCTATAAGGCAC 59.368 45.833 21.95 0.00 39.63 5.01
6415 6820 6.934645 TGTTTCACAAGACTTGACCTATAAGG 59.065 38.462 21.95 0.00 42.49 2.69
6428 6836 4.504097 GGTTTTGAGCATGTTTCACAAGAC 59.496 41.667 0.00 0.00 0.00 3.01
6429 6837 4.441356 GGGTTTTGAGCATGTTTCACAAGA 60.441 41.667 0.00 0.00 0.00 3.02
6430 6838 3.803778 GGGTTTTGAGCATGTTTCACAAG 59.196 43.478 0.00 0.00 0.00 3.16
6431 6839 3.450457 AGGGTTTTGAGCATGTTTCACAA 59.550 39.130 0.00 0.00 0.00 3.33
6433 6841 3.068024 TGAGGGTTTTGAGCATGTTTCAC 59.932 43.478 0.00 0.00 0.00 3.18
6434 6842 3.295093 TGAGGGTTTTGAGCATGTTTCA 58.705 40.909 0.00 0.00 0.00 2.69
6435 6843 4.202151 ACTTGAGGGTTTTGAGCATGTTTC 60.202 41.667 0.00 0.00 0.00 2.78
6436 6844 3.706086 ACTTGAGGGTTTTGAGCATGTTT 59.294 39.130 0.00 0.00 0.00 2.83
6437 6845 3.299503 ACTTGAGGGTTTTGAGCATGTT 58.700 40.909 0.00 0.00 0.00 2.71
6442 6861 2.287009 CGTTGACTTGAGGGTTTTGAGC 60.287 50.000 0.00 0.00 0.00 4.26
6457 6876 2.096819 TGGAGTTTTCAGCAACGTTGAC 59.903 45.455 31.62 21.18 0.00 3.18
6484 6904 2.691526 ACTATACGGCGGAACAGATCAA 59.308 45.455 13.24 0.00 0.00 2.57
6485 6905 2.304092 ACTATACGGCGGAACAGATCA 58.696 47.619 13.24 0.00 0.00 2.92
6486 6906 4.698583 ATACTATACGGCGGAACAGATC 57.301 45.455 13.24 0.00 0.00 2.75
6503 6923 6.870769 ACTAGCAAACCACGTAACATATACT 58.129 36.000 0.00 0.00 0.00 2.12
6504 6924 7.917505 AGTACTAGCAAACCACGTAACATATAC 59.082 37.037 0.00 0.00 0.00 1.47
6505 6925 7.999679 AGTACTAGCAAACCACGTAACATATA 58.000 34.615 0.00 0.00 0.00 0.86
6509 6929 4.549458 GAGTACTAGCAAACCACGTAACA 58.451 43.478 0.00 0.00 0.00 2.41
6510 6930 3.605486 CGAGTACTAGCAAACCACGTAAC 59.395 47.826 0.00 0.00 0.00 2.50
6511 6931 3.253188 ACGAGTACTAGCAAACCACGTAA 59.747 43.478 2.52 0.00 31.13 3.18
6512 6932 2.813754 ACGAGTACTAGCAAACCACGTA 59.186 45.455 2.52 0.00 31.13 3.57
6513 6933 1.610522 ACGAGTACTAGCAAACCACGT 59.389 47.619 2.52 0.00 0.00 4.49
6514 6934 1.983605 CACGAGTACTAGCAAACCACG 59.016 52.381 2.52 0.00 0.00 4.94
6515 6935 3.022607 ACACGAGTACTAGCAAACCAC 57.977 47.619 2.52 0.00 0.00 4.16
6516 6936 5.395682 AATACACGAGTACTAGCAAACCA 57.604 39.130 2.52 0.00 31.96 3.67
6517 6937 6.471519 CACTAATACACGAGTACTAGCAAACC 59.528 42.308 8.16 0.00 34.28 3.27
6518 6938 7.246311 TCACTAATACACGAGTACTAGCAAAC 58.754 38.462 8.16 0.00 34.28 2.93
6519 6939 7.381766 TCACTAATACACGAGTACTAGCAAA 57.618 36.000 8.16 0.00 34.28 3.68
6520 6940 6.990341 TCACTAATACACGAGTACTAGCAA 57.010 37.500 8.16 0.00 34.28 3.91
6521 6941 6.990341 TTCACTAATACACGAGTACTAGCA 57.010 37.500 8.16 0.00 34.28 3.49
6525 6945 8.932791 CCAAATTTTCACTAATACACGAGTACT 58.067 33.333 0.00 0.00 31.96 2.73
6526 6946 7.691050 GCCAAATTTTCACTAATACACGAGTAC 59.309 37.037 0.00 0.00 31.96 2.73
6527 6947 7.148373 GGCCAAATTTTCACTAATACACGAGTA 60.148 37.037 0.00 0.00 34.10 2.59
6528 6948 6.349033 GGCCAAATTTTCACTAATACACGAGT 60.349 38.462 0.00 0.00 0.00 4.18
6529 6949 6.027749 GGCCAAATTTTCACTAATACACGAG 58.972 40.000 0.00 0.00 0.00 4.18
6531 6951 5.704888 TGGCCAAATTTTCACTAATACACG 58.295 37.500 0.61 0.00 0.00 4.49
6532 6952 7.954788 TTTGGCCAAATTTTCACTAATACAC 57.045 32.000 27.13 0.00 0.00 2.90
6534 6954 8.803799 CGTATTTGGCCAAATTTTCACTAATAC 58.196 33.333 40.69 27.97 40.99 1.89
6535 6955 8.524487 ACGTATTTGGCCAAATTTTCACTAATA 58.476 29.630 40.69 20.98 40.99 0.98
6539 6959 5.208463 ACGTATTTGGCCAAATTTTCACT 57.792 34.783 40.69 23.05 40.99 3.41
6547 7000 5.223382 CAAACATGTACGTATTTGGCCAAA 58.777 37.500 32.12 32.12 34.46 3.28
6551 7004 3.191791 ACCCAAACATGTACGTATTTGGC 59.808 43.478 26.07 3.57 46.47 4.52
6560 7013 6.681865 GCCACCAAATATACCCAAACATGTAC 60.682 42.308 0.00 0.00 0.00 2.90
6561 7014 5.361285 GCCACCAAATATACCCAAACATGTA 59.639 40.000 0.00 0.00 0.00 2.29
6562 7015 4.161377 GCCACCAAATATACCCAAACATGT 59.839 41.667 0.00 0.00 0.00 3.21
6563 7016 4.692228 GCCACCAAATATACCCAAACATG 58.308 43.478 0.00 0.00 0.00 3.21
6564 7017 3.383185 CGCCACCAAATATACCCAAACAT 59.617 43.478 0.00 0.00 0.00 2.71
6565 7018 2.755655 CGCCACCAAATATACCCAAACA 59.244 45.455 0.00 0.00 0.00 2.83
6566 7019 3.018149 TCGCCACCAAATATACCCAAAC 58.982 45.455 0.00 0.00 0.00 2.93
6569 7022 3.218453 CATTCGCCACCAAATATACCCA 58.782 45.455 0.00 0.00 0.00 4.51
6570 7023 2.556622 CCATTCGCCACCAAATATACCC 59.443 50.000 0.00 0.00 0.00 3.69
6571 7024 3.219281 ACCATTCGCCACCAAATATACC 58.781 45.455 0.00 0.00 0.00 2.73
6573 7026 3.117851 TGGACCATTCGCCACCAAATATA 60.118 43.478 0.00 0.00 0.00 0.86
6574 7027 2.306847 GGACCATTCGCCACCAAATAT 58.693 47.619 0.00 0.00 0.00 1.28
6575 7028 1.004862 TGGACCATTCGCCACCAAATA 59.995 47.619 0.00 0.00 0.00 1.40
6576 7029 0.251564 TGGACCATTCGCCACCAAAT 60.252 50.000 0.00 0.00 0.00 2.32
6577 7030 1.151679 TGGACCATTCGCCACCAAA 59.848 52.632 0.00 0.00 0.00 3.28
6582 7035 0.327924 ATCAAGTGGACCATTCGCCA 59.672 50.000 0.00 0.00 0.00 5.69
6583 7036 0.734889 CATCAAGTGGACCATTCGCC 59.265 55.000 0.00 0.00 0.00 5.54
6594 7047 0.518636 CAACTCGCCACCATCAAGTG 59.481 55.000 0.00 0.00 37.51 3.16
6595 7048 1.237285 GCAACTCGCCACCATCAAGT 61.237 55.000 0.00 0.00 32.94 3.16
6596 7049 1.503542 GCAACTCGCCACCATCAAG 59.496 57.895 0.00 0.00 32.94 3.02
6597 7050 2.324330 CGCAACTCGCCACCATCAA 61.324 57.895 0.00 0.00 37.30 2.57
6598 7051 2.741985 CGCAACTCGCCACCATCA 60.742 61.111 0.00 0.00 37.30 3.07
6599 7052 2.742372 ACGCAACTCGCCACCATC 60.742 61.111 0.00 0.00 43.23 3.51
6600 7053 3.049674 CACGCAACTCGCCACCAT 61.050 61.111 0.00 0.00 43.23 3.55
6715 7174 4.312231 CATAATGCCACCGCCGCG 62.312 66.667 5.59 5.59 0.00 6.46
6716 7175 3.964875 CCATAATGCCACCGCCGC 61.965 66.667 0.00 0.00 0.00 6.53
6717 7176 3.964875 GCCATAATGCCACCGCCG 61.965 66.667 0.00 0.00 0.00 6.46
6719 7178 3.964875 CCGCCATAATGCCACCGC 61.965 66.667 0.00 0.00 0.00 5.68
6720 7179 2.203139 TCCGCCATAATGCCACCG 60.203 61.111 0.00 0.00 0.00 4.94
6721 7180 0.465460 TTCTCCGCCATAATGCCACC 60.465 55.000 0.00 0.00 0.00 4.61
6722 7181 0.947244 CTTCTCCGCCATAATGCCAC 59.053 55.000 0.00 0.00 0.00 5.01
6723 7182 0.179020 CCTTCTCCGCCATAATGCCA 60.179 55.000 0.00 0.00 0.00 4.92
6732 7191 0.674534 ATGATACGTCCTTCTCCGCC 59.325 55.000 0.00 0.00 0.00 6.13
6755 7214 0.890683 GTGAAAAGGCCACCCATGAG 59.109 55.000 5.01 0.00 0.00 2.90
6757 7216 1.178534 ACGTGAAAAGGCCACCCATG 61.179 55.000 5.01 5.32 0.00 3.66
6758 7217 1.152830 ACGTGAAAAGGCCACCCAT 59.847 52.632 5.01 0.00 0.00 4.00
6759 7218 1.826054 CACGTGAAAAGGCCACCCA 60.826 57.895 10.90 0.00 0.00 4.51
6760 7219 2.561037 CCACGTGAAAAGGCCACCC 61.561 63.158 19.30 0.00 0.00 4.61
6761 7220 3.039134 CCACGTGAAAAGGCCACC 58.961 61.111 19.30 0.00 0.00 4.61
6762 7221 2.335011 GCCACGTGAAAAGGCCAC 59.665 61.111 19.30 0.00 42.58 5.01
6766 7225 2.966309 GAGCGGCCACGTGAAAAGG 61.966 63.158 19.30 0.00 43.45 3.11
6797 7256 4.874977 GAGCGTGCCTCGGCTACC 62.875 72.222 9.65 0.00 42.51 3.18
6798 7257 3.432051 ATGAGCGTGCCTCGGCTAC 62.432 63.158 9.65 5.16 43.82 3.58
6799 7258 3.138930 GATGAGCGTGCCTCGGCTA 62.139 63.158 9.65 0.00 43.82 3.93
6800 7259 4.521062 GATGAGCGTGCCTCGGCT 62.521 66.667 9.65 0.00 43.82 5.52
6925 7400 2.044650 CCCCTCCGTCTCCGTGTA 60.045 66.667 0.00 0.00 0.00 2.90
6949 7424 2.112815 ACGCAATTAAGCCCGCCTC 61.113 57.895 0.00 0.00 0.00 4.70
6965 7449 0.863538 CCACTTCGATCGCTCTCACG 60.864 60.000 11.09 0.00 0.00 4.35
6966 7450 0.526524 CCCACTTCGATCGCTCTCAC 60.527 60.000 11.09 0.00 0.00 3.51
6979 7463 1.077663 AGCACATCAATTCCCCCACTT 59.922 47.619 0.00 0.00 0.00 3.16
6991 7475 1.456296 GCAGGAACATGAGCACATCA 58.544 50.000 0.00 0.00 43.70 3.07
6992 7476 0.737219 GGCAGGAACATGAGCACATC 59.263 55.000 0.00 0.00 34.15 3.06
6993 7477 0.682209 GGGCAGGAACATGAGCACAT 60.682 55.000 0.00 0.00 37.19 3.21
6994 7478 1.303561 GGGCAGGAACATGAGCACA 60.304 57.895 0.00 0.00 0.00 4.57
7038 7522 9.634163 CACTACATACACTTTGGCGATATAATA 57.366 33.333 0.00 0.00 0.00 0.98
7039 7523 8.148351 ACACTACATACACTTTGGCGATATAAT 58.852 33.333 0.00 0.00 0.00 1.28
7040 7524 7.436970 CACACTACATACACTTTGGCGATATAA 59.563 37.037 0.00 0.00 0.00 0.98
7047 7531 2.161609 GGCACACTACATACACTTTGGC 59.838 50.000 0.00 0.00 0.00 4.52
7055 7539 2.470821 GATCCACGGCACACTACATAC 58.529 52.381 0.00 0.00 0.00 2.39
7056 7540 1.411246 GGATCCACGGCACACTACATA 59.589 52.381 6.95 0.00 0.00 2.29
7057 7541 0.178068 GGATCCACGGCACACTACAT 59.822 55.000 6.95 0.00 0.00 2.29
7170 7666 4.699522 GGACACTCCACCCACGCC 62.700 72.222 0.00 0.00 36.28 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.