AutoCloner

Multiple sequence alignment - TraesCS4D01G178600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G178600	chr4D	100.000	3854	0	0	1	3854	309942556	309946409	0.000000e+00	7118.0
1	TraesCS4D01G178600	chr4B	94.489	2468	88	12	890	3329	387401426	387403873	0.000000e+00	3760.0
2	TraesCS4D01G178600	chr4B	89.583	336	19	1	3324	3643	387404141	387404476	2.770000e-111	412.0
3	TraesCS4D01G178600	chr4A	93.818	2103	83	18	890	2962	164688545	164686460	0.000000e+00	3120.0
4	TraesCS4D01G178600	chr4A	83.333	420	36	15	476	873	601032288	601031881	1.320000e-94	357.0
5	TraesCS4D01G178600	chr6D	89.138	893	77	10	1	874	80335471	80336362	0.000000e+00	1094.0
6	TraesCS4D01G178600	chr1B	88.889	891	80	6	1	872	339360858	339361748	0.000000e+00	1079.0
7	TraesCS4D01G178600	chr1D	91.591	773	63	2	1	772	447464827	447464056	0.000000e+00	1066.0
8	TraesCS4D01G178600	chr1D	88.137	902	79	18	2	883	417913513	417912620	0.000000e+00	1048.0
9	TraesCS4D01G178600	chr1D	90.992	766	63	3	2	765	402303200	402302439	0.000000e+00	1027.0
10	TraesCS4D01G178600	chr2B	89.722	827	75	5	1	824	79658619	79657800	0.000000e+00	1048.0
11	TraesCS4D01G178600	chr2B	88.333	60	7	0	1165	1224	94090375	94090316	5.340000e-09	73.1
12	TraesCS4D01G178600	chr3B	88.558	874	75	11	1	855	553063422	553064289	0.000000e+00	1037.0
13	TraesCS4D01G178600	chr3B	84.131	397	41	10	506	883	531571438	531571831	7.870000e-97	364.0
14	TraesCS4D01G178600	chr3B	74.000	200	48	4	1308	1505	245964146	245963949	1.150000e-10	78.7
15	TraesCS4D01G178600	chr3B	100.000	30	0	0	1440	1469	448314115	448314086	5.380000e-04	56.5
16	TraesCS4D01G178600	chr7B	87.694	902	88	11	2	884	620638933	620638036	0.000000e+00	1029.0
17	TraesCS4D01G178600	chr7B	78.440	218	28	7	689	887	566325695	566325478	1.450000e-24	124.0
18	TraesCS4D01G178600	chr7D	87.682	893	83	18	2	873	611980161	611981047	0.000000e+00	1014.0
19	TraesCS4D01G178600	chr7D	85.572	901	100	14	2	882	621169452	621168562	0.000000e+00	917.0
20	TraesCS4D01G178600	chr3D	87.157	911	84	13	2974	3854	1772274	1773181	0.000000e+00	1003.0
21	TraesCS4D01G178600	chr3D	88.317	796	70	10	106	882	582588865	582589656	0.000000e+00	933.0
22	TraesCS4D01G178600	chr3D	100.000	32	0	0	1440	1471	348912533	348912502	4.160000e-05	60.2
23	TraesCS4D01G178600	chr3A	86.903	901	95	13	2	882	680983864	680984761	0.000000e+00	989.0
24	TraesCS4D01G178600	chr3A	86.364	660	58	10	2980	3609	7253965	7253308	0.000000e+00	691.0
25	TraesCS4D01G178600	chr3A	100.000	30	0	0	1440	1469	467403539	467403510	5.380000e-04	56.5
26	TraesCS4D01G178600	chr1A	86.409	905	97	14	2	884	526739906	526739006	0.000000e+00	966.0
27	TraesCS4D01G178600	chr7A	83.197	244	21	9	659	884	472564863	472565104	5.050000e-49	206.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G178600	chr4D	309942556	309946409	3853	False	7118	7118	100.000	1	3854	1	chr4D.!!$F1	3853
1	TraesCS4D01G178600	chr4B	387401426	387404476	3050	False	2086	3760	92.036	890	3643	2	chr4B.!!$F1	2753
2	TraesCS4D01G178600	chr4A	164686460	164688545	2085	True	3120	3120	93.818	890	2962	1	chr4A.!!$R1	2072
3	TraesCS4D01G178600	chr6D	80335471	80336362	891	False	1094	1094	89.138	1	874	1	chr6D.!!$F1	873
4	TraesCS4D01G178600	chr1B	339360858	339361748	890	False	1079	1079	88.889	1	872	1	chr1B.!!$F1	871
5	TraesCS4D01G178600	chr1D	447464056	447464827	771	True	1066	1066	91.591	1	772	1	chr1D.!!$R3	771
6	TraesCS4D01G178600	chr1D	417912620	417913513	893	True	1048	1048	88.137	2	883	1	chr1D.!!$R2	881
7	TraesCS4D01G178600	chr1D	402302439	402303200	761	True	1027	1027	90.992	2	765	1	chr1D.!!$R1	763
8	TraesCS4D01G178600	chr2B	79657800	79658619	819	True	1048	1048	89.722	1	824	1	chr2B.!!$R1	823
9	TraesCS4D01G178600	chr3B	553063422	553064289	867	False	1037	1037	88.558	1	855	1	chr3B.!!$F2	854
10	TraesCS4D01G178600	chr7B	620638036	620638933	897	True	1029	1029	87.694	2	884	1	chr7B.!!$R2	882
11	TraesCS4D01G178600	chr7D	611980161	611981047	886	False	1014	1014	87.682	2	873	1	chr7D.!!$F1	871
12	TraesCS4D01G178600	chr7D	621168562	621169452	890	True	917	917	85.572	2	882	1	chr7D.!!$R1	880
13	TraesCS4D01G178600	chr3D	1772274	1773181	907	False	1003	1003	87.157	2974	3854	1	chr3D.!!$F1	880
14	TraesCS4D01G178600	chr3D	582588865	582589656	791	False	933	933	88.317	106	882	1	chr3D.!!$F2	776
15	TraesCS4D01G178600	chr3A	680983864	680984761	897	False	989	989	86.903	2	882	1	chr3A.!!$F1	880
16	TraesCS4D01G178600	chr3A	7253308	7253965	657	True	691	691	86.364	2980	3609	1	chr3A.!!$R1	629
17	TraesCS4D01G178600	chr1A	526739006	526739906	900	True	966	966	86.409	2	884	1	chr1A.!!$R1	882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
986	1013	0.457851	CGAAAGGTGAGCCTCGAGAT	59.542	55.0	15.71	1.11	46.33	2.75	F
1591	1632	0.531974	TCGGCGGAATGGAAGTATGC	60.532	55.0	7.21	0.00	0.00	3.14	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1816	1875	1.134037	TGTGCATCATGGCTATCAGCA	60.134	47.619	0.0	0.0	44.75	4.41	R
3097	3178	0.818296	AGTCACACCCTCGCATAGAC	59.182	55.000	0.0	0.0	0.00	2.59	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
60	62	1.759445	CGATGGATCAAGTGGAGGAGT	59.241	52.381	0.00	0.00	0.00	3.85
374	377	2.266689	GTGGTTGGGCGTCGGTAT	59.733	61.111	0.00	0.00	0.00	2.73
381	384	3.192922	GGCGTCGGTATGTGGTGC	61.193	66.667	0.00	0.00	0.00	5.01
383	386	2.030401	GCGTCGGTATGTGGTGCAA	61.030	57.895	0.00	0.00	0.00	4.08
412	415	2.170397	TCATCCTACACATCAATGGCGT	59.830	45.455	0.00	0.00	0.00	5.68
642	646	0.949105	GTGCCGGACTGGTGTGTAAG	60.949	60.000	5.05	0.00	41.21	2.34
945	972	7.141363	CCTATAAATATGCTTTGGAACTGCAC	58.859	38.462	0.00	0.00	39.63	4.57
986	1013	0.457851	CGAAAGGTGAGCCTCGAGAT	59.542	55.000	15.71	1.11	46.33	2.75
1134	1161	1.407258	GCGCTTCTCACTATCAGGACT	59.593	52.381	0.00	0.00	0.00	3.85
1227	1254	1.311859	TTGTGCAAGCAAGTCCTCAG	58.688	50.000	0.00	0.00	0.00	3.35
1266	1293	5.373812	TCCCTTGGTCCTCTTTCAATATC	57.626	43.478	0.00	0.00	0.00	1.63
1269	1296	5.163343	CCCTTGGTCCTCTTTCAATATCGTA	60.163	44.000	0.00	0.00	0.00	3.43
1306	1339	1.674519	GGTGGATGCATGTGTGTACGA	60.675	52.381	2.46	0.00	0.00	3.43
1473	1506	4.498520	CTGCGCCGACATCCTCGT	62.499	66.667	4.18	0.00	41.18	4.18
1552	1589	2.433318	ACCTTCTCGCGCTTGAGC	60.433	61.111	5.56	0.00	35.90	4.26
1589	1630	1.270839	CCATCGGCGGAATGGAAGTAT	60.271	52.381	19.67	0.00	37.66	2.12
1590	1631	1.800586	CATCGGCGGAATGGAAGTATG	59.199	52.381	7.21	0.00	0.00	2.39
1591	1632	0.531974	TCGGCGGAATGGAAGTATGC	60.532	55.000	7.21	0.00	0.00	3.14
1596	1637	2.404215	CGGAATGGAAGTATGCGTAGG	58.596	52.381	0.00	0.00	0.00	3.18
1816	1875	2.596631	CTGCCTTGCCTGCACACT	60.597	61.111	0.00	0.00	34.46	3.55
1832	1891	2.548480	CACACTGCTGATAGCCATGATG	59.452	50.000	0.00	0.00	41.51	3.07
1868	1933	4.083431	GGAGACATGCATGCATTGATAGAC	60.083	45.833	30.32	17.89	33.90	2.59
2123	2196	0.028505	CCGCATCGCCTGAATTCAAG	59.971	55.000	9.88	4.49	0.00	3.02
2142	2215	2.045524	AGATGGTGATCGATGGCTCTT	58.954	47.619	0.54	0.00	33.34	2.85
2231	2304	4.279169	CCTTTTTGCTTGAGAACCTGATCA	59.721	41.667	0.00	0.00	0.00	2.92
2289	2362	0.037326	TCATTCACCACCGTGCTCTC	60.037	55.000	0.00	0.00	40.04	3.20
2433	2506	1.658114	TCGATAATGCCTCGACCGG	59.342	57.895	0.00	0.00	40.01	5.28
2890	2963	9.832445	TGGGTATCTATCTTACAAAATGAACTC	57.168	33.333	0.00	0.00	0.00	3.01
2965	3042	4.082245	CCGAGTTAAATGCATTGGTTCCTT	60.082	41.667	13.82	0.00	0.00	3.36
3020	3097	9.408648	CTTCCATTACTTAACCAAGGTCATTAT	57.591	33.333	0.00	0.00	35.97	1.28
3077	3157	2.297880	ACACATCGTAACCACACTGCTA	59.702	45.455	0.00	0.00	0.00	3.49
3097	3178	4.830765	TTTGGAGCGATCGGCCCG	62.831	66.667	18.30	0.00	45.17	6.13
3101	3182	3.285215	GAGCGATCGGCCCGTCTA	61.285	66.667	18.30	0.00	45.17	2.59
3102	3183	2.597805	AGCGATCGGCCCGTCTAT	60.598	61.111	18.30	0.00	45.17	1.98
3170	3253	0.107643	TCATGGTGCCGAGTGTGAAA	59.892	50.000	0.00	0.00	0.00	2.69
3195	3278	6.352016	AGATATCTAATGTCGCTCACCATT	57.648	37.500	2.53	0.00	35.55	3.16
3242	3325	1.226859	GGTCACCGATCATTCGCGA	60.227	57.895	3.71	3.71	44.12	5.87
3338	3701	1.605992	CTGCCATCTCTGCCTCCAA	59.394	57.895	0.00	0.00	0.00	3.53
3444	3807	1.274703	TGCCATCCTCCTCCTTCCAC	61.275	60.000	0.00	0.00	0.00	4.02
3452	3815	0.909610	TCCTCCTTCCACGAGCCATT	60.910	55.000	0.00	0.00	0.00	3.16
3456	3819	1.207089	TCCTTCCACGAGCCATTAGTG	59.793	52.381	0.00	0.00	35.79	2.74
3555	3934	1.271840	GCCCCTATGTGAGACCACCA	61.272	60.000	0.00	0.00	42.53	4.17
3646	4025	1.918609	GAATCTGGTAGACGCGTCAAC	59.081	52.381	37.85	26.32	0.00	3.18
3682	4061	5.491070	CTTGTTGTGATAGACCTCATTCCA	58.509	41.667	0.00	0.00	0.00	3.53
3685	4064	4.743057	TGTGATAGACCTCATTCCACAG	57.257	45.455	0.00	0.00	0.00	3.66
3690	4069	1.211457	AGACCTCATTCCACAGATGCC	59.789	52.381	0.00	0.00	0.00	4.40
3715	4094	1.004595	CGCCACAGTGTCATGATCAG	58.995	55.000	0.00	0.00	0.00	2.90
3723	4102	2.170187	AGTGTCATGATCAGAGGAAGCC	59.830	50.000	0.00	0.00	0.00	4.35
3733	4112	3.394836	AGGAAGCCGCTCCTCCAC	61.395	66.667	12.68	0.00	42.53	4.02
3738	4117	4.008933	GCCGCTCCTCCACAGTGT	62.009	66.667	0.00	0.00	0.00	3.55
3739	4118	2.262915	CCGCTCCTCCACAGTGTC	59.737	66.667	0.00	0.00	0.00	3.67
3740	4119	2.126307	CGCTCCTCCACAGTGTCG	60.126	66.667	0.00	0.00	0.00	4.35
3749	4128	0.320683	CCACAGTGTCGCCATCAAGA	60.321	55.000	0.00	0.00	0.00	3.02
3783	4162	1.129917	TTCAGGACCGGTGTTGGTTA	58.870	50.000	14.63	0.00	44.01	2.85
3790	4169	3.819902	GGACCGGTGTTGGTTATGTTTTA	59.180	43.478	14.63	0.00	44.01	1.52
3793	4172	4.828387	ACCGGTGTTGGTTATGTTTTACAT	59.172	37.500	6.12	0.00	39.99	2.29
3798	4177	7.520776	CGGTGTTGGTTATGTTTTACATCTTGA	60.521	37.037	0.00	0.00	39.88	3.02
3799	4178	8.303876	GGTGTTGGTTATGTTTTACATCTTGAT	58.696	33.333	0.00	0.00	39.88	2.57
3816	4195	8.712103	ACATCTTGATCATTCTTCTCCTATTCA	58.288	33.333	0.00	0.00	0.00	2.57
3823	4202	7.060383	TCATTCTTCTCCTATTCACCATCTC	57.940	40.000	0.00	0.00	0.00	2.75
3835	4214	1.341531	CACCATCTCCGTCCATAGTCC	59.658	57.143	0.00	0.00	0.00	3.85
3836	4215	0.969894	CCATCTCCGTCCATAGTCCC	59.030	60.000	0.00	0.00	0.00	4.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	2.282180	GCAACACCCACCGACCAT	60.282	61.111	0.00	0.00	0.00	3.55
60	62	0.399091	AGCAGCTAGGCCACCATCTA	60.399	55.000	5.01	0.00	0.00	1.98
287	289	2.125673	CATGGGGGTGACGACGAC	60.126	66.667	0.00	0.00	0.00	4.34
381	384	1.732259	GTGTAGGATGAAGCACCGTTG	59.268	52.381	0.00	0.00	0.00	4.10
383	386	0.973632	TGTGTAGGATGAAGCACCGT	59.026	50.000	0.00	0.00	0.00	4.83
412	415	4.193334	CACGCCGCTGAGATCCGA	62.193	66.667	0.00	0.00	0.00	4.55
460	463	2.091830	TCCTCCTACATGAGTCCATCGT	60.092	50.000	0.00	0.00	0.00	3.73
642	646	3.633361	GCCATATACCTGGACTGGC	57.367	57.895	14.30	14.30	44.91	4.85
754	761	2.688446	CCTGACACTTATCGCTACTCCA	59.312	50.000	0.00	0.00	0.00	3.86
884	911	5.467063	GGAATTACAGGCATGTACTAGCTTC	59.533	44.000	11.37	9.00	41.62	3.86
885	912	5.131142	AGGAATTACAGGCATGTACTAGCTT	59.869	40.000	11.37	0.40	41.62	3.74
886	913	4.656112	AGGAATTACAGGCATGTACTAGCT	59.344	41.667	11.37	0.00	41.62	3.32
887	914	4.962155	AGGAATTACAGGCATGTACTAGC	58.038	43.478	11.37	2.28	41.62	3.42
888	915	6.161855	TGAGGAATTACAGGCATGTACTAG	57.838	41.667	11.37	0.00	41.62	2.57
986	1013	4.517075	CACGAGCCATGAGAGATCTAAGTA	59.483	45.833	0.00	0.00	0.00	2.24
1014	1041	1.344763	AGAAAAGGTGGGAGACGAGTG	59.655	52.381	0.00	0.00	0.00	3.51
1125	1152	0.107066	TCGCCACGGTAGTCCTGATA	60.107	55.000	0.00	0.00	0.00	2.15
1227	1254	5.372373	CAAGGGAATAACAGAGGAAGATCC	58.628	45.833	0.00	0.00	36.58	3.36
1266	1293	5.204833	CACCATCAAACAAGTTCACTTACG	58.795	41.667	0.00	0.00	34.28	3.18
1269	1296	4.277476	TCCACCATCAAACAAGTTCACTT	58.723	39.130	0.00	0.00	36.45	3.16
1306	1339	4.203076	GACGCGTCGCACCCCTAT	62.203	66.667	25.19	0.00	0.00	2.57
1396	1429	3.260632	TGATCCTGTCAATCACCTCGAAA	59.739	43.478	0.00	0.00	32.78	3.46
1506	1539	7.550906	CAGAGAGCTGTAAATTTAGGCTTTAGT	59.449	37.037	19.91	10.23	37.37	2.24
1534	1571	2.734673	GCTCAAGCGCGAGAAGGTG	61.735	63.158	12.10	0.00	34.79	4.00
1552	1589	3.121463	CGATGGAACGATCGGTATTTTCG	60.121	47.826	20.98	15.20	41.29	3.46
1563	1604	2.897207	TTCCGCCGATGGAACGAT	59.103	55.556	4.44	0.00	43.01	3.73
1589	1630	2.299013	ACTGATTGTCACTTCCTACGCA	59.701	45.455	0.00	0.00	0.00	5.24
1590	1631	2.960819	ACTGATTGTCACTTCCTACGC	58.039	47.619	0.00	0.00	0.00	4.42
1591	1632	5.312120	AGTACTGATTGTCACTTCCTACG	57.688	43.478	0.00	0.00	0.00	3.51
1816	1875	1.134037	TGTGCATCATGGCTATCAGCA	60.134	47.619	0.00	0.00	44.75	4.41
1832	1891	1.816074	TGTCTCCGGGTAATTTGTGC	58.184	50.000	0.00	0.00	0.00	4.57
1868	1933	4.219507	AGTGTGACTGACTCTTCTATGTGG	59.780	45.833	0.00	0.00	0.00	4.17
2111	2184	3.003068	CGATCACCATCTTGAATTCAGGC	59.997	47.826	12.50	0.00	0.00	4.85
2123	2196	2.141517	CAAGAGCCATCGATCACCATC	58.858	52.381	0.00	0.00	0.00	3.51
2142	2215	2.280797	GTGACAAGCGCAGGGACA	60.281	61.111	11.47	1.73	0.00	4.02
2289	2362	8.768019	GTGATTTTCTTCTTTTGAATTTGGAGG	58.232	33.333	0.00	0.00	37.85	4.30
2389	2462	3.011119	GCTGTACCGGAGATCTATCGAT	58.989	50.000	9.46	2.16	0.00	3.59
2433	2506	1.278238	GGATTCACGTGGTGATCGAC	58.722	55.000	17.00	2.58	42.40	4.20
2977	3054	7.396540	AATGGAAGACTCTTATTTCGCAAAT	57.603	32.000	0.00	0.00	34.90	2.32
3077	3157	1.227674	GGCCGATCGCTCCAAAGAT	60.228	57.895	10.32	0.00	37.74	2.40
3097	3178	0.818296	AGTCACACCCTCGCATAGAC	59.182	55.000	0.00	0.00	0.00	2.59
3101	3182	2.665000	CCAGTCACACCCTCGCAT	59.335	61.111	0.00	0.00	0.00	4.73
3102	3183	4.314440	GCCAGTCACACCCTCGCA	62.314	66.667	0.00	0.00	0.00	5.10
3170	3253	7.652524	ATGGTGAGCGACATTAGATATCTAT	57.347	36.000	13.22	0.00	0.00	1.98
3195	3278	1.072806	GATAGATCACCCATGGCAGCA	59.927	52.381	6.09	0.00	0.00	4.41
3444	3807	2.015736	AGCTCAACACTAATGGCTCG	57.984	50.000	0.00	0.00	0.00	5.03
3452	3815	3.118884	GGGATCGGTAAAGCTCAACACTA	60.119	47.826	0.00	0.00	0.00	2.74
3456	3819	2.280628	CTGGGATCGGTAAAGCTCAAC	58.719	52.381	0.00	0.00	0.00	3.18
3555	3934	7.234355	AGTGTTGATTTCACTAAAGGGAAGAT	58.766	34.615	0.00	0.00	43.17	2.40
3655	4034	3.265791	GAGGTCTATCACAACAAGCTGG	58.734	50.000	0.00	0.00	0.00	4.85
3657	4036	4.833478	ATGAGGTCTATCACAACAAGCT	57.167	40.909	0.00	0.00	30.46	3.74
3664	4043	4.352893	TCTGTGGAATGAGGTCTATCACA	58.647	43.478	0.00	0.00	33.45	3.58
3682	4061	2.045926	GGCGGAACTGGCATCTGT	60.046	61.111	2.35	0.00	0.00	3.41
3685	4064	2.359850	TGTGGCGGAACTGGCATC	60.360	61.111	12.65	7.69	46.76	3.91
3690	4069	0.603707	ATGACACTGTGGCGGAACTG	60.604	55.000	13.09	0.00	0.00	3.16
3723	4102	2.126307	CGACACTGTGGAGGAGCG	60.126	66.667	13.09	2.43	0.00	5.03
3738	4117	3.619419	TCATCCATTTTCTTGATGGCGA	58.381	40.909	0.00	0.00	43.04	5.54
3739	4118	4.543692	GATCATCCATTTTCTTGATGGCG	58.456	43.478	0.00	0.00	43.04	5.69
3740	4119	4.342951	TGGATCATCCATTTTCTTGATGGC	59.657	41.667	0.66	0.00	42.67	4.40
3773	4152	7.653647	TCAAGATGTAAAACATAACCAACACC	58.346	34.615	0.00	0.00	39.27	4.16
3790	4169	8.712103	TGAATAGGAGAAGAATGATCAAGATGT	58.288	33.333	0.00	0.00	0.00	3.06
3793	4172	7.126268	TGGTGAATAGGAGAAGAATGATCAAGA	59.874	37.037	0.00	0.00	0.00	3.02
3798	4177	7.256619	GGAGATGGTGAATAGGAGAAGAATGAT	60.257	40.741	0.00	0.00	0.00	2.45
3799	4178	6.042552	GGAGATGGTGAATAGGAGAAGAATGA	59.957	42.308	0.00	0.00	0.00	2.57
3816	4195	1.705873	GGACTATGGACGGAGATGGT	58.294	55.000	0.00	0.00	0.00	3.55
3823	4202	2.857744	GCTCGGGGACTATGGACGG	61.858	68.421	0.00	0.00	0.00	4.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.