Multiple sequence alignment - TraesCS4D01G178200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G178200 chr4D 100.000 5834 0 0 1 5834 309701957 309696124 0.000000e+00 10774.0
1 TraesCS4D01G178200 chr4D 97.487 557 14 0 1522 2078 471504622 471505178 0.000000e+00 952.0
2 TraesCS4D01G178200 chr4D 98.182 330 5 1 2414 2742 471505709 471506038 5.070000e-160 575.0
3 TraesCS4D01G178200 chr4D 95.808 167 7 0 5373 5539 173125845 173125679 2.680000e-68 270.0
4 TraesCS4D01G178200 chr4B 97.769 2645 43 8 2742 5374 386747185 386744545 0.000000e+00 4543.0
5 TraesCS4D01G178200 chr4B 94.060 1532 38 16 1 1524 386748660 386747174 0.000000e+00 2276.0
6 TraesCS4D01G178200 chr4B 95.205 292 13 1 5536 5827 386744546 386744256 1.480000e-125 460.0
7 TraesCS4D01G178200 chr4B 94.286 175 9 1 5373 5546 99432916 99433090 3.470000e-67 267.0
8 TraesCS4D01G178200 chr4A 96.544 2257 49 8 3142 5374 165359039 165361290 0.000000e+00 3709.0
9 TraesCS4D01G178200 chr4A 95.666 1523 41 5 1 1521 165357261 165358760 0.000000e+00 2423.0
10 TraesCS4D01G178200 chr4A 92.784 873 34 4 1871 2741 46622410 46621565 0.000000e+00 1236.0
11 TraesCS4D01G178200 chr4A 91.449 573 41 8 1517 2084 689654053 689653484 0.000000e+00 780.0
12 TraesCS4D01G178200 chr4A 93.636 330 18 3 2414 2741 689653048 689652720 1.890000e-134 490.0
13 TraesCS4D01G178200 chr4A 94.314 299 12 3 5536 5834 165361289 165361582 2.480000e-123 453.0
14 TraesCS4D01G178200 chr4A 95.539 269 8 2 2742 3008 165358752 165359018 1.500000e-115 427.0
15 TraesCS4D01G178200 chr7D 95.579 1244 28 3 1522 2742 273838671 273839910 0.000000e+00 1967.0
16 TraesCS4D01G178200 chr7D 86.452 155 15 5 4964 5114 83654271 83654423 1.300000e-36 165.0
17 TraesCS4D01G178200 chr7D 87.838 74 6 3 2289 2361 631319873 631319802 3.750000e-12 84.2
18 TraesCS4D01G178200 chr5A 90.927 1003 65 17 1756 2741 613535218 613534225 0.000000e+00 1325.0
19 TraesCS4D01G178200 chr5A 85.256 156 15 5 4964 5116 427828438 427828588 2.820000e-33 154.0
20 TraesCS4D01G178200 chr5B 96.092 563 21 1 1522 2084 592314564 592314003 0.000000e+00 917.0
21 TraesCS4D01G178200 chr5B 94.896 529 23 4 1513 2040 82173771 82173246 0.000000e+00 824.0
22 TraesCS4D01G178200 chr5B 92.212 565 32 9 1522 2078 38773901 38774461 0.000000e+00 789.0
23 TraesCS4D01G178200 chr5B 97.214 323 6 3 2421 2741 592313470 592313149 1.430000e-150 544.0
24 TraesCS4D01G178200 chr5B 94.099 322 15 3 2425 2743 38774915 38775235 2.440000e-133 486.0
25 TraesCS4D01G178200 chr5B 92.476 319 20 4 2424 2741 304657636 304657951 2.480000e-123 453.0
26 TraesCS4D01G178200 chr5B 87.080 387 36 8 2355 2728 110129709 110130094 5.400000e-115 425.0
27 TraesCS4D01G178200 chr5B 94.737 171 8 1 5373 5543 441127707 441127876 1.250000e-66 265.0
28 TraesCS4D01G178200 chr1A 96.353 521 17 2 1522 2041 580547338 580546819 0.000000e+00 856.0
29 TraesCS4D01G178200 chr1A 95.777 521 20 2 1522 2041 580534034 580533515 0.000000e+00 839.0
30 TraesCS4D01G178200 chr7A 95.202 521 22 3 1522 2041 696874424 696873906 0.000000e+00 821.0
31 TraesCS4D01G178200 chr7A 88.000 50 6 0 69 118 668769231 668769280 6.310000e-05 60.2
32 TraesCS4D01G178200 chr1B 93.958 331 17 3 2414 2742 670852218 670851889 1.130000e-136 497.0
33 TraesCS4D01G178200 chr1B 87.500 152 10 5 4964 5114 491543348 491543491 3.620000e-37 167.0
34 TraesCS4D01G178200 chr1B 84.211 95 8 6 2289 2381 599335641 599335552 1.040000e-12 86.1
35 TraesCS4D01G178200 chr7B 96.364 165 6 0 5373 5537 728967520 728967356 7.450000e-69 272.0
36 TraesCS4D01G178200 chr6D 93.785 177 9 2 5373 5547 260024674 260024498 1.250000e-66 265.0
37 TraesCS4D01G178200 chr6A 93.785 177 9 2 5373 5547 370675440 370675616 1.250000e-66 265.0
38 TraesCS4D01G178200 chr5D 94.186 172 10 0 5373 5544 6096291 6096462 4.480000e-66 263.0
39 TraesCS4D01G178200 chr5D 88.725 204 20 2 5367 5570 321901908 321902108 4.520000e-61 246.0
40 TraesCS4D01G178200 chr2D 94.675 169 8 1 5373 5540 32474468 32474300 1.610000e-65 261.0
41 TraesCS4D01G178200 chr3B 87.578 161 16 4 4956 5115 733603076 733603233 3.590000e-42 183.0
42 TraesCS4D01G178200 chr3D 88.235 153 16 2 4963 5114 307237215 307237064 1.290000e-41 182.0
43 TraesCS4D01G178200 chr1D 87.342 158 13 4 4964 5114 452344728 452344571 2.160000e-39 174.0
44 TraesCS4D01G178200 chr1D 86.486 148 17 3 4968 5114 486005885 486006030 6.050000e-35 159.0
45 TraesCS4D01G178200 chr2A 88.000 75 5 4 2289 2361 431041969 431042041 1.040000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G178200 chr4D 309696124 309701957 5833 True 10774.000000 10774 100.00000 1 5834 1 chr4D.!!$R2 5833
1 TraesCS4D01G178200 chr4D 471504622 471506038 1416 False 763.500000 952 97.83450 1522 2742 2 chr4D.!!$F1 1220
2 TraesCS4D01G178200 chr4B 386744256 386748660 4404 True 2426.333333 4543 95.67800 1 5827 3 chr4B.!!$R1 5826
3 TraesCS4D01G178200 chr4A 165357261 165361582 4321 False 1753.000000 3709 95.51575 1 5834 4 chr4A.!!$F1 5833
4 TraesCS4D01G178200 chr4A 46621565 46622410 845 True 1236.000000 1236 92.78400 1871 2741 1 chr4A.!!$R1 870
5 TraesCS4D01G178200 chr4A 689652720 689654053 1333 True 635.000000 780 92.54250 1517 2741 2 chr4A.!!$R2 1224
6 TraesCS4D01G178200 chr7D 273838671 273839910 1239 False 1967.000000 1967 95.57900 1522 2742 1 chr7D.!!$F2 1220
7 TraesCS4D01G178200 chr5A 613534225 613535218 993 True 1325.000000 1325 90.92700 1756 2741 1 chr5A.!!$R1 985
8 TraesCS4D01G178200 chr5B 82173246 82173771 525 True 824.000000 824 94.89600 1513 2040 1 chr5B.!!$R1 527
9 TraesCS4D01G178200 chr5B 592313149 592314564 1415 True 730.500000 917 96.65300 1522 2741 2 chr5B.!!$R2 1219
10 TraesCS4D01G178200 chr5B 38773901 38775235 1334 False 637.500000 789 93.15550 1522 2743 2 chr5B.!!$F4 1221
11 TraesCS4D01G178200 chr1A 580546819 580547338 519 True 856.000000 856 96.35300 1522 2041 1 chr1A.!!$R2 519
12 TraesCS4D01G178200 chr1A 580533515 580534034 519 True 839.000000 839 95.77700 1522 2041 1 chr1A.!!$R1 519
13 TraesCS4D01G178200 chr7A 696873906 696874424 518 True 821.000000 821 95.20200 1522 2041 1 chr7A.!!$R1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 497 1.182385 GCGAGAGGATGGGGTAGAGG 61.182 65.000 0.00 0.0 0.0 3.69 F
1096 1104 2.158559 TGCGTGCCAGTATTTGTGAAT 58.841 42.857 0.00 0.0 0.0 2.57 F
2746 3144 0.694771 TCTGCAATTCACTCCAGGCT 59.305 50.000 0.00 0.0 0.0 4.58 F
2934 3334 0.984230 ACCATCCCTGAAAAGCGAGA 59.016 50.000 0.00 0.0 0.0 4.04 F
3127 3527 1.234615 TAGTGGCACAGCTTTTCGGC 61.235 55.000 21.41 0.0 41.8 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2050 1.003839 GTCGTTGATGCCAGGTCCA 60.004 57.895 0.00 0.0 0.00 4.02 R
2997 3397 0.109342 AAGAGGTGCACCAACTGAGG 59.891 55.000 36.39 0.0 38.89 3.86 R
4615 5029 3.547054 AAACAGAACCGGTACAGTTCA 57.453 42.857 22.66 0.0 44.91 3.18 R
4771 5185 1.135315 TGAAATGCATGAGAAAGCCGC 60.135 47.619 0.00 0.0 0.00 6.53 R
5174 5598 1.202290 ACAACAGCAGCCTCAAAAACG 60.202 47.619 0.00 0.0 0.00 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
494 497 1.182385 GCGAGAGGATGGGGTAGAGG 61.182 65.000 0.00 0.00 0.00 3.69
738 741 2.288025 TACTTGACCACCCCGAGCC 61.288 63.158 0.00 0.00 0.00 4.70
1091 1099 2.162208 AGAACATGCGTGCCAGTATTTG 59.838 45.455 5.64 0.00 0.00 2.32
1096 1104 2.158559 TGCGTGCCAGTATTTGTGAAT 58.841 42.857 0.00 0.00 0.00 2.57
1405 1414 2.542597 TCAACAACCAGTACGTGTGAC 58.457 47.619 0.00 0.00 0.00 3.67
2534 2918 1.900351 GGGGGCTGATTGCTTTTCC 59.100 57.895 0.00 0.00 42.39 3.13
2743 3141 3.318839 TGGTTTTCTGCAATTCACTCCAG 59.681 43.478 0.00 0.00 0.00 3.86
2744 3142 3.305608 GGTTTTCTGCAATTCACTCCAGG 60.306 47.826 0.00 0.00 0.00 4.45
2745 3143 1.538047 TTCTGCAATTCACTCCAGGC 58.462 50.000 0.00 0.00 0.00 4.85
2746 3144 0.694771 TCTGCAATTCACTCCAGGCT 59.305 50.000 0.00 0.00 0.00 4.58
2747 3145 1.908619 TCTGCAATTCACTCCAGGCTA 59.091 47.619 0.00 0.00 0.00 3.93
2748 3146 2.093288 TCTGCAATTCACTCCAGGCTAG 60.093 50.000 0.00 0.00 0.00 3.42
2749 3147 1.630369 TGCAATTCACTCCAGGCTAGT 59.370 47.619 0.00 0.00 0.00 2.57
2933 3333 1.089920 CACCATCCCTGAAAAGCGAG 58.910 55.000 0.00 0.00 0.00 5.03
2934 3334 0.984230 ACCATCCCTGAAAAGCGAGA 59.016 50.000 0.00 0.00 0.00 4.04
2989 3389 3.326578 TGCTATGTGGGTGGCGGT 61.327 61.111 0.00 0.00 0.00 5.68
2990 3390 2.824041 GCTATGTGGGTGGCGGTG 60.824 66.667 0.00 0.00 0.00 4.94
2997 3397 4.279043 GGGTGGCGGTGTTGTTGC 62.279 66.667 0.00 0.00 0.00 4.17
3124 3524 2.813754 TCACATAGTGGCACAGCTTTTC 59.186 45.455 21.41 0.00 41.80 2.29
3127 3527 1.234615 TAGTGGCACAGCTTTTCGGC 61.235 55.000 21.41 0.00 41.80 5.54
3376 3776 2.050350 CGTGGAGCTCCGGACCTAA 61.050 63.158 27.43 5.35 39.43 2.69
3941 4355 5.292765 CATCAGCATTGTCGATACTAGGTT 58.707 41.667 0.00 0.00 0.00 3.50
4058 4472 7.170554 TGGTAGGAATCAGGGAAGTATACTA 57.829 40.000 5.65 0.00 0.00 1.82
4287 4701 5.260424 TGGGCTTGCATAATCTTTCTGTTA 58.740 37.500 0.00 0.00 0.00 2.41
4378 4792 7.589958 TTTGGGTTACTCACAAATTGTACAT 57.410 32.000 0.00 0.00 43.47 2.29
4570 4984 2.299582 CCACAATTCTTGGCATGGTTGA 59.700 45.455 18.78 0.44 34.12 3.18
4615 5029 7.760340 TCCGTGTTAAAATGTTGCTTAAAGTTT 59.240 29.630 0.00 0.00 0.00 2.66
5010 5424 4.518970 GCCCTTTTAGCGATTCCAATATGA 59.481 41.667 0.00 0.00 0.00 2.15
5011 5425 5.335191 GCCCTTTTAGCGATTCCAATATGAG 60.335 44.000 0.00 0.00 0.00 2.90
5012 5426 5.997746 CCCTTTTAGCGATTCCAATATGAGA 59.002 40.000 0.00 0.00 0.00 3.27
5014 5428 7.148340 CCCTTTTAGCGATTCCAATATGAGATC 60.148 40.741 0.00 0.00 0.00 2.75
5374 5798 6.199342 ACCAAATGTGTTACGCAAATTGTTAC 59.801 34.615 19.09 0.00 35.32 2.50
5375 5799 6.419413 CCAAATGTGTTACGCAAATTGTTACT 59.581 34.615 19.09 0.00 35.32 2.24
5376 5800 7.358023 CCAAATGTGTTACGCAAATTGTTACTC 60.358 37.037 19.09 0.00 35.32 2.59
5377 5801 5.098218 TGTGTTACGCAAATTGTTACTCC 57.902 39.130 0.00 0.00 0.00 3.85
5378 5802 4.023878 TGTGTTACGCAAATTGTTACTCCC 60.024 41.667 0.00 0.00 0.00 4.30
5379 5803 4.214758 GTGTTACGCAAATTGTTACTCCCT 59.785 41.667 0.00 0.00 0.00 4.20
5380 5804 4.453136 TGTTACGCAAATTGTTACTCCCTC 59.547 41.667 0.00 0.00 0.00 4.30
5381 5805 2.433436 ACGCAAATTGTTACTCCCTCC 58.567 47.619 0.00 0.00 0.00 4.30
5382 5806 1.396996 CGCAAATTGTTACTCCCTCCG 59.603 52.381 0.00 0.00 0.00 4.63
5383 5807 2.433436 GCAAATTGTTACTCCCTCCGT 58.567 47.619 0.00 0.00 0.00 4.69
5384 5808 2.817844 GCAAATTGTTACTCCCTCCGTT 59.182 45.455 0.00 0.00 0.00 4.44
5385 5809 3.119955 GCAAATTGTTACTCCCTCCGTTC 60.120 47.826 0.00 0.00 0.00 3.95
5386 5810 3.345508 AATTGTTACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
5387 5811 2.019807 TTGTTACTCCCTCCGTTCCT 57.980 50.000 0.00 0.00 0.00 3.36
5388 5812 2.905415 TGTTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
5389 5813 3.173953 TGTTACTCCCTCCGTTCCTAA 57.826 47.619 0.00 0.00 0.00 2.69
5390 5814 3.509442 TGTTACTCCCTCCGTTCCTAAA 58.491 45.455 0.00 0.00 0.00 1.85
5391 5815 4.098894 TGTTACTCCCTCCGTTCCTAAAT 58.901 43.478 0.00 0.00 0.00 1.40
5392 5816 5.271598 TGTTACTCCCTCCGTTCCTAAATA 58.728 41.667 0.00 0.00 0.00 1.40
5393 5817 5.901276 TGTTACTCCCTCCGTTCCTAAATAT 59.099 40.000 0.00 0.00 0.00 1.28
5394 5818 6.384886 TGTTACTCCCTCCGTTCCTAAATATT 59.615 38.462 0.00 0.00 0.00 1.28
5395 5819 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5396 5820 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5397 5821 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5398 5822 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5399 5823 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5400 5824 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5401 5825 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5402 5826 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5403 5827 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5404 5828 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5405 5829 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5406 5830 8.336080 CCGTTCCTAAATATTTGTCTTTCTAGC 58.664 37.037 11.05 0.00 0.00 3.42
5407 5831 8.336080 CGTTCCTAAATATTTGTCTTTCTAGCC 58.664 37.037 11.05 0.00 0.00 3.93
5408 5832 9.174166 GTTCCTAAATATTTGTCTTTCTAGCCA 57.826 33.333 11.05 0.00 0.00 4.75
5409 5833 9.920946 TTCCTAAATATTTGTCTTTCTAGCCAT 57.079 29.630 11.05 0.00 0.00 4.40
5410 5834 9.920946 TCCTAAATATTTGTCTTTCTAGCCATT 57.079 29.630 11.05 0.00 0.00 3.16
5417 5841 8.767478 ATTTGTCTTTCTAGCCATTTCAAATG 57.233 30.769 2.80 2.80 33.66 2.32
5418 5842 6.271488 TGTCTTTCTAGCCATTTCAAATGG 57.729 37.500 23.16 23.16 41.99 3.16
5419 5843 6.009589 TGTCTTTCTAGCCATTTCAAATGGA 58.990 36.000 30.24 11.40 41.64 3.41
5420 5844 6.493115 TGTCTTTCTAGCCATTTCAAATGGAA 59.507 34.615 30.24 16.80 41.64 3.53
5421 5845 7.178983 TGTCTTTCTAGCCATTTCAAATGGAAT 59.821 33.333 30.24 19.85 41.64 3.01
5422 5846 8.686334 GTCTTTCTAGCCATTTCAAATGGAATA 58.314 33.333 30.24 19.90 41.64 1.75
5423 5847 8.686334 TCTTTCTAGCCATTTCAAATGGAATAC 58.314 33.333 30.24 13.82 41.64 1.89
5424 5848 7.953005 TTCTAGCCATTTCAAATGGAATACA 57.047 32.000 30.24 9.57 41.64 2.29
5425 5849 7.953005 TCTAGCCATTTCAAATGGAATACAA 57.047 32.000 30.24 8.90 41.64 2.41
5426 5850 7.771183 TCTAGCCATTTCAAATGGAATACAAC 58.229 34.615 30.24 12.12 41.64 3.32
5427 5851 6.357579 AGCCATTTCAAATGGAATACAACA 57.642 33.333 30.24 0.00 41.64 3.33
5428 5852 6.949715 AGCCATTTCAAATGGAATACAACAT 58.050 32.000 30.24 3.51 41.64 2.71
5429 5853 8.076910 AGCCATTTCAAATGGAATACAACATA 57.923 30.769 30.24 0.00 41.64 2.29
5430 5854 7.981225 AGCCATTTCAAATGGAATACAACATAC 59.019 33.333 30.24 9.62 41.64 2.39
5431 5855 7.763528 GCCATTTCAAATGGAATACAACATACA 59.236 33.333 30.24 0.00 41.64 2.29
5432 5856 9.820725 CCATTTCAAATGGAATACAACATACAT 57.179 29.630 23.10 0.00 41.64 2.29
5435 5859 7.258022 TCAAATGGAATACAACATACATCCG 57.742 36.000 0.00 0.00 0.00 4.18
5436 5860 6.826231 TCAAATGGAATACAACATACATCCGT 59.174 34.615 0.00 0.00 0.00 4.69
5437 5861 7.988028 TCAAATGGAATACAACATACATCCGTA 59.012 33.333 0.00 0.00 0.00 4.02
5438 5862 8.783093 CAAATGGAATACAACATACATCCGTAT 58.217 33.333 0.00 0.00 38.96 3.06
5458 5882 9.128404 TCCGTATGTAGACATATTTTAGAGTGT 57.872 33.333 5.69 0.00 40.53 3.55
5478 5902 7.516198 AGTGTAGATTCACTCATTTTGCTTT 57.484 32.000 0.00 0.00 44.07 3.51
5479 5903 7.365741 AGTGTAGATTCACTCATTTTGCTTTG 58.634 34.615 0.00 0.00 44.07 2.77
5480 5904 7.013655 AGTGTAGATTCACTCATTTTGCTTTGT 59.986 33.333 0.00 0.00 44.07 2.83
5481 5905 8.289618 GTGTAGATTCACTCATTTTGCTTTGTA 58.710 33.333 0.00 0.00 35.68 2.41
5482 5906 9.013229 TGTAGATTCACTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
5483 5907 9.282247 GTAGATTCACTCATTTTGCTTTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
5484 5908 7.889469 AGATTCACTCATTTTGCTTTGTATGT 58.111 30.769 0.00 0.00 0.00 2.29
5485 5909 9.013229 AGATTCACTCATTTTGCTTTGTATGTA 57.987 29.630 0.00 0.00 0.00 2.29
5486 5910 9.282247 GATTCACTCATTTTGCTTTGTATGTAG 57.718 33.333 0.00 0.00 0.00 2.74
5487 5911 7.744087 TCACTCATTTTGCTTTGTATGTAGT 57.256 32.000 0.00 0.00 0.00 2.73
5488 5912 7.806690 TCACTCATTTTGCTTTGTATGTAGTC 58.193 34.615 0.00 0.00 0.00 2.59
5489 5913 7.443879 TCACTCATTTTGCTTTGTATGTAGTCA 59.556 33.333 0.00 0.00 0.00 3.41
5490 5914 7.535258 CACTCATTTTGCTTTGTATGTAGTCAC 59.465 37.037 0.00 0.00 0.00 3.67
5491 5915 7.445402 ACTCATTTTGCTTTGTATGTAGTCACT 59.555 33.333 0.00 0.00 0.00 3.41
5492 5916 8.165239 TCATTTTGCTTTGTATGTAGTCACTT 57.835 30.769 0.00 0.00 0.00 3.16
5493 5917 8.075574 TCATTTTGCTTTGTATGTAGTCACTTG 58.924 33.333 0.00 0.00 0.00 3.16
5494 5918 6.935741 TTTGCTTTGTATGTAGTCACTTGT 57.064 33.333 0.00 0.00 0.00 3.16
5495 5919 6.935741 TTGCTTTGTATGTAGTCACTTGTT 57.064 33.333 0.00 0.00 0.00 2.83
5496 5920 6.299023 TGCTTTGTATGTAGTCACTTGTTG 57.701 37.500 0.00 0.00 0.00 3.33
5497 5921 6.052360 TGCTTTGTATGTAGTCACTTGTTGA 58.948 36.000 0.00 0.00 0.00 3.18
5498 5922 6.540551 TGCTTTGTATGTAGTCACTTGTTGAA 59.459 34.615 0.00 0.00 35.39 2.69
5499 5923 7.066404 TGCTTTGTATGTAGTCACTTGTTGAAA 59.934 33.333 0.00 0.00 35.39 2.69
5500 5924 8.076178 GCTTTGTATGTAGTCACTTGTTGAAAT 58.924 33.333 0.00 0.00 35.39 2.17
5501 5925 9.599322 CTTTGTATGTAGTCACTTGTTGAAATC 57.401 33.333 0.00 0.00 35.39 2.17
5502 5926 8.902540 TTGTATGTAGTCACTTGTTGAAATCT 57.097 30.769 0.00 0.00 35.39 2.40
5503 5927 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
5504 5928 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
5505 5929 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
5506 5930 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
5507 5931 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
5508 5932 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
5509 5933 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
5510 5934 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
5511 5935 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
5512 5936 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
5513 5937 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
5514 5938 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
5515 5939 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
5528 5952 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
5529 5953 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5530 5954 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5531 5955 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5532 5956 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5533 5957 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5534 5958 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5535 5959 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
5536 5960 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
5589 6013 7.485810 TCAATTGATAGTTTGATCATTGCAGG 58.514 34.615 3.38 0.00 35.77 4.85
5611 6035 3.352648 GCATTTCCTGTTGCCTACCTTA 58.647 45.455 0.00 0.00 32.66 2.69
5699 6123 9.681062 AATATAACTTACACTTTGGCAGTACAT 57.319 29.630 0.00 0.00 32.76 2.29
5714 6138 7.767261 TGGCAGTACATTTTCCATGTTATTAC 58.233 34.615 0.00 0.00 33.76 1.89
5746 6170 0.109781 CGATGCTTCCGTTGTTTGGG 60.110 55.000 0.00 0.00 0.00 4.12
5829 6253 4.695231 CGCGAACGGGACTGTCGT 62.695 66.667 0.00 0.00 43.14 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.853468 TGTATACTGGGATTTTGCCTCA 57.147 40.909 4.17 0.00 0.00 3.86
158 161 1.068281 CCTGACGAGGTGATCCATGAG 59.932 57.143 0.00 0.00 34.16 2.90
388 391 0.522180 CTCTCTGTACGGCGTCAAGT 59.478 55.000 19.21 0.00 0.00 3.16
458 461 2.124570 CTCCGGGACATTGGGCTG 60.125 66.667 0.00 0.00 0.00 4.85
738 741 2.182030 GGTTCTCGAGGCGTGGAG 59.818 66.667 13.56 11.72 0.00 3.86
809 812 2.520741 CAACAAAGCGGGGTGGGT 60.521 61.111 0.00 0.00 0.00 4.51
813 816 4.531426 TGGGCAACAAAGCGGGGT 62.531 61.111 0.00 0.00 39.74 4.95
901 909 3.066481 GCGGACGTCTAGGTTTCTCTTAT 59.934 47.826 16.46 0.00 0.00 1.73
902 910 2.421424 GCGGACGTCTAGGTTTCTCTTA 59.579 50.000 16.46 0.00 0.00 2.10
904 912 0.810016 GCGGACGTCTAGGTTTCTCT 59.190 55.000 16.46 0.00 0.00 3.10
1091 1099 0.385974 GACACGCAGCCACAATTCAC 60.386 55.000 0.00 0.00 0.00 3.18
1096 1104 2.280797 GAGGACACGCAGCCACAA 60.281 61.111 0.00 0.00 0.00 3.33
1163 1172 2.066340 CCCACCACAGCAGGAACTA 58.934 57.895 0.00 0.00 36.02 2.24
1405 1414 4.049186 CGATTAACCCGGATTACACTCAG 58.951 47.826 0.73 0.00 0.00 3.35
1440 1449 2.566833 TTGCTGCTACACTCATTGGT 57.433 45.000 0.00 0.00 0.00 3.67
1719 1729 4.396357 TTTCTTTTTAGATCCAGGGGCA 57.604 40.909 0.00 0.00 0.00 5.36
2008 2050 1.003839 GTCGTTGATGCCAGGTCCA 60.004 57.895 0.00 0.00 0.00 4.02
2140 2182 2.523168 TGCACGTGGTCTCCCTCA 60.523 61.111 18.88 0.42 0.00 3.86
2534 2918 3.188460 CACACACCCCTTGATCTAAAACG 59.812 47.826 0.00 0.00 0.00 3.60
2745 3143 3.027412 TCTTCTCCCTGCAGCTAACTAG 58.973 50.000 8.66 1.00 0.00 2.57
2746 3144 3.101643 TCTTCTCCCTGCAGCTAACTA 57.898 47.619 8.66 0.00 0.00 2.24
2747 3145 1.944177 TCTTCTCCCTGCAGCTAACT 58.056 50.000 8.66 0.00 0.00 2.24
2748 3146 2.770164 TTCTTCTCCCTGCAGCTAAC 57.230 50.000 8.66 0.00 0.00 2.34
2749 3147 3.788227 TTTTCTTCTCCCTGCAGCTAA 57.212 42.857 8.66 0.00 0.00 3.09
2933 3333 2.125512 CTAGGGCGCCACTGTGTC 60.126 66.667 30.85 8.87 0.00 3.67
2934 3334 2.603473 TCTAGGGCGCCACTGTGT 60.603 61.111 30.85 7.34 0.00 3.72
2989 3389 1.102154 CACCAACTGAGGCAACAACA 58.898 50.000 0.00 0.00 41.41 3.33
2990 3390 0.249031 GCACCAACTGAGGCAACAAC 60.249 55.000 0.00 0.00 41.41 3.32
2997 3397 0.109342 AAGAGGTGCACCAACTGAGG 59.891 55.000 36.39 0.00 38.89 3.86
3371 3771 2.405559 ACCCGCCTAGCTAAATTAGGT 58.594 47.619 9.76 9.76 39.91 3.08
3376 3776 2.224548 GGATCAACCCGCCTAGCTAAAT 60.225 50.000 0.00 0.00 0.00 1.40
3760 4174 8.193250 TCGTAGCCTTACAATTGAAGTAATTC 57.807 34.615 13.59 0.00 36.87 2.17
3941 4355 9.219603 CTAACAGGAGAAATAGAACAATCACAA 57.780 33.333 0.00 0.00 0.00 3.33
4058 4472 4.515191 CGAATTTATCATTCGGACACCCAT 59.485 41.667 8.74 0.00 44.89 4.00
4214 4628 6.614694 TTGAACTACTGGTAGAAAGGCATA 57.385 37.500 13.83 0.00 36.97 3.14
4357 4771 8.448615 GTTAGATGTACAATTTGTGAGTAACCC 58.551 37.037 12.30 0.00 0.00 4.11
4558 4972 6.357579 ACTGAATTAAATCAACCATGCCAA 57.642 33.333 0.00 0.00 0.00 4.52
4615 5029 3.547054 AAACAGAACCGGTACAGTTCA 57.453 42.857 22.66 0.00 44.91 3.18
4771 5185 1.135315 TGAAATGCATGAGAAAGCCGC 60.135 47.619 0.00 0.00 0.00 6.53
5174 5598 1.202290 ACAACAGCAGCCTCAAAAACG 60.202 47.619 0.00 0.00 0.00 3.60
5374 5798 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5375 5799 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5376 5800 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5377 5801 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5378 5802 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5379 5803 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5380 5804 8.336080 GCTAGAAAGACAAATATTTAGGAACGG 58.664 37.037 0.00 0.00 0.00 4.44
5381 5805 8.336080 GGCTAGAAAGACAAATATTTAGGAACG 58.664 37.037 0.00 0.00 0.00 3.95
5382 5806 9.174166 TGGCTAGAAAGACAAATATTTAGGAAC 57.826 33.333 0.00 0.00 38.01 3.62
5383 5807 9.920946 ATGGCTAGAAAGACAAATATTTAGGAA 57.079 29.630 0.00 0.00 46.32 3.36
5384 5808 9.920946 AATGGCTAGAAAGACAAATATTTAGGA 57.079 29.630 0.00 0.00 46.32 2.94
5391 5815 9.859427 CATTTGAAATGGCTAGAAAGACAAATA 57.141 29.630 9.98 0.00 46.32 1.40
5392 5816 7.820872 CCATTTGAAATGGCTAGAAAGACAAAT 59.179 33.333 22.59 0.00 46.32 2.32
5393 5817 7.015098 TCCATTTGAAATGGCTAGAAAGACAAA 59.985 33.333 27.78 6.99 46.32 2.83
5394 5818 6.493115 TCCATTTGAAATGGCTAGAAAGACAA 59.507 34.615 27.78 7.18 46.32 3.18
5395 5819 7.178983 ATTCCATTTGAAATGGCTAGAAAGACA 59.821 33.333 27.78 7.65 39.03 3.41
5396 5820 6.515272 TCCATTTGAAATGGCTAGAAAGAC 57.485 37.500 27.78 0.00 39.01 3.01
5397 5821 7.722949 ATTCCATTTGAAATGGCTAGAAAGA 57.277 32.000 27.78 8.99 39.01 2.52
5398 5822 8.469200 TGTATTCCATTTGAAATGGCTAGAAAG 58.531 33.333 27.78 6.20 39.01 2.62
5399 5823 8.359875 TGTATTCCATTTGAAATGGCTAGAAA 57.640 30.769 27.78 18.21 39.01 2.52
5400 5824 7.953005 TGTATTCCATTTGAAATGGCTAGAA 57.047 32.000 27.78 18.53 39.01 2.10
5401 5825 7.395772 TGTTGTATTCCATTTGAAATGGCTAGA 59.604 33.333 27.78 17.90 39.01 2.43
5402 5826 7.546358 TGTTGTATTCCATTTGAAATGGCTAG 58.454 34.615 27.78 8.52 39.01 3.42
5403 5827 7.473735 TGTTGTATTCCATTTGAAATGGCTA 57.526 32.000 27.78 19.32 39.01 3.93
5404 5828 6.357579 TGTTGTATTCCATTTGAAATGGCT 57.642 33.333 27.78 20.06 39.01 4.75
5405 5829 7.763528 TGTATGTTGTATTCCATTTGAAATGGC 59.236 33.333 27.78 16.28 39.01 4.40
5406 5830 9.820725 ATGTATGTTGTATTCCATTTGAAATGG 57.179 29.630 26.94 26.94 40.48 3.16
5409 5833 8.187480 CGGATGTATGTTGTATTCCATTTGAAA 58.813 33.333 0.00 0.00 36.33 2.69
5410 5834 7.338196 ACGGATGTATGTTGTATTCCATTTGAA 59.662 33.333 0.00 0.00 37.38 2.69
5411 5835 6.826231 ACGGATGTATGTTGTATTCCATTTGA 59.174 34.615 0.00 0.00 0.00 2.69
5412 5836 7.026631 ACGGATGTATGTTGTATTCCATTTG 57.973 36.000 0.00 0.00 0.00 2.32
5413 5837 8.918202 ATACGGATGTATGTTGTATTCCATTT 57.082 30.769 0.00 0.00 39.81 2.32
5432 5856 9.128404 ACACTCTAAAATATGTCTACATACGGA 57.872 33.333 4.98 0.00 41.15 4.69
5455 5879 7.141363 ACAAAGCAAAATGAGTGAATCTACAC 58.859 34.615 0.00 0.00 40.60 2.90
5456 5880 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
5457 5881 9.282247 CATACAAAGCAAAATGAGTGAATCTAC 57.718 33.333 0.00 0.00 0.00 2.59
5458 5882 9.013229 ACATACAAAGCAAAATGAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
5459 5883 7.889469 ACATACAAAGCAAAATGAGTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
5460 5884 9.282247 CTACATACAAAGCAAAATGAGTGAATC 57.718 33.333 0.00 0.00 0.00 2.52
5461 5885 8.796475 ACTACATACAAAGCAAAATGAGTGAAT 58.204 29.630 0.00 0.00 0.00 2.57
5462 5886 8.165239 ACTACATACAAAGCAAAATGAGTGAA 57.835 30.769 0.00 0.00 0.00 3.18
5463 5887 7.443879 TGACTACATACAAAGCAAAATGAGTGA 59.556 33.333 0.00 0.00 0.00 3.41
5464 5888 7.535258 GTGACTACATACAAAGCAAAATGAGTG 59.465 37.037 0.00 0.00 0.00 3.51
5465 5889 7.445402 AGTGACTACATACAAAGCAAAATGAGT 59.555 33.333 0.00 0.00 0.00 3.41
5466 5890 7.810658 AGTGACTACATACAAAGCAAAATGAG 58.189 34.615 0.00 0.00 0.00 2.90
5467 5891 7.744087 AGTGACTACATACAAAGCAAAATGA 57.256 32.000 0.00 0.00 0.00 2.57
5468 5892 7.862372 ACAAGTGACTACATACAAAGCAAAATG 59.138 33.333 0.00 0.00 0.00 2.32
5469 5893 7.940850 ACAAGTGACTACATACAAAGCAAAAT 58.059 30.769 0.00 0.00 0.00 1.82
5470 5894 7.328277 ACAAGTGACTACATACAAAGCAAAA 57.672 32.000 0.00 0.00 0.00 2.44
5471 5895 6.935741 ACAAGTGACTACATACAAAGCAAA 57.064 33.333 0.00 0.00 0.00 3.68
5472 5896 6.540551 TCAACAAGTGACTACATACAAAGCAA 59.459 34.615 0.00 0.00 0.00 3.91
5473 5897 6.052360 TCAACAAGTGACTACATACAAAGCA 58.948 36.000 0.00 0.00 0.00 3.91
5474 5898 6.539649 TCAACAAGTGACTACATACAAAGC 57.460 37.500 0.00 0.00 0.00 3.51
5475 5899 9.599322 GATTTCAACAAGTGACTACATACAAAG 57.401 33.333 0.00 0.00 35.39 2.77
5476 5900 9.337396 AGATTTCAACAAGTGACTACATACAAA 57.663 29.630 0.00 0.00 35.39 2.83
5477 5901 8.902540 AGATTTCAACAAGTGACTACATACAA 57.097 30.769 0.00 0.00 35.39 2.41
5478 5902 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
5479 5903 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
5481 5905 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
5482 5906 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
5483 5907 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
5484 5908 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
5485 5909 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
5486 5910 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
5487 5911 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
5488 5912 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
5489 5913 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5502 5926 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
5503 5927 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5504 5928 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5505 5929 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5506 5930 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5507 5931 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5508 5932 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5509 5933 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5510 5934 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5511 5935 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5512 5936 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5513 5937 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5514 5938 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
5517 5941 8.912614 AATATATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
5518 5942 9.247861 GTAATATATACTCCCTCCGTTCCTAAA 57.752 37.037 0.00 0.00 0.00 1.85
5519 5943 8.618385 AGTAATATATACTCCCTCCGTTCCTAA 58.382 37.037 0.00 0.00 0.00 2.69
5520 5944 8.167691 AGTAATATATACTCCCTCCGTTCCTA 57.832 38.462 0.00 0.00 0.00 2.94
5521 5945 7.042106 AGTAATATATACTCCCTCCGTTCCT 57.958 40.000 0.00 0.00 0.00 3.36
5522 5946 8.993404 ATAGTAATATATACTCCCTCCGTTCC 57.007 38.462 0.00 0.00 0.00 3.62
5524 5948 8.693625 GCAATAGTAATATATACTCCCTCCGTT 58.306 37.037 0.00 0.00 0.00 4.44
5525 5949 8.060075 AGCAATAGTAATATATACTCCCTCCGT 58.940 37.037 0.00 0.00 0.00 4.69
5526 5950 8.466617 AGCAATAGTAATATATACTCCCTCCG 57.533 38.462 0.00 0.00 0.00 4.63
5527 5951 9.649316 AGAGCAATAGTAATATATACTCCCTCC 57.351 37.037 0.00 0.00 0.00 4.30
5611 6035 8.725148 CAAATTGCAAGAGACTCAATTAGTAGT 58.275 33.333 4.94 0.00 38.88 2.73
5699 6123 8.183104 TGATGTTGTGGTAATAACATGGAAAA 57.817 30.769 7.26 0.00 45.09 2.29
5746 6170 2.348998 CAGCCCAGTGGTCAGGAC 59.651 66.667 8.74 0.00 0.00 3.85
5772 6196 2.646175 ATCTGACCGGGTCACCACG 61.646 63.158 25.53 15.82 37.67 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.