Multiple sequence alignment - TraesCS4D01G178000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G178000 chr4D 100.000 4511 0 0 1 4511 309513602 309509092 0.000000e+00 8331.0
1 TraesCS4D01G178000 chr4A 95.317 2947 88 17 1597 4511 165709547 165712475 0.000000e+00 4632.0
2 TraesCS4D01G178000 chr4A 96.089 358 14 0 1239 1596 165709137 165709494 6.500000e-163 584.0
3 TraesCS4D01G178000 chr4A 87.719 399 23 8 887 1259 165707999 165708397 4.140000e-120 442.0
4 TraesCS4D01G178000 chr4A 90.625 288 17 7 461 742 165707724 165708007 1.530000e-99 374.0
5 TraesCS4D01G178000 chr4A 89.200 250 27 0 82 331 515453534 515453783 3.390000e-81 313.0
6 TraesCS4D01G178000 chr4B 94.278 2534 66 23 1595 4105 386225472 386222995 0.000000e+00 3803.0
7 TraesCS4D01G178000 chr4B 90.890 933 57 10 691 1596 386226454 386225523 0.000000e+00 1227.0
8 TraesCS4D01G178000 chr4B 90.106 758 20 13 3609 4353 386222989 386222274 0.000000e+00 933.0
9 TraesCS4D01G178000 chr4B 90.947 243 22 0 82 324 104439938 104440180 1.210000e-85 327.0
10 TraesCS4D01G178000 chr4B 89.041 219 18 5 461 678 386226803 386226590 2.680000e-67 267.0
11 TraesCS4D01G178000 chr4B 93.617 94 6 0 4418 4511 386218774 386218681 1.690000e-29 141.0
12 TraesCS4D01G178000 chr4B 93.617 94 6 0 4418 4511 386220595 386220502 1.690000e-29 141.0
13 TraesCS4D01G178000 chr4B 92.553 94 7 0 4418 4511 386216953 386216860 7.870000e-28 135.0
14 TraesCS4D01G178000 chr2D 90.476 252 24 0 82 333 429087007 429086756 2.600000e-87 333.0
15 TraesCS4D01G178000 chr2D 96.078 51 0 2 3902 3952 8281194 8281242 1.040000e-11 82.4
16 TraesCS4D01G178000 chr2D 97.561 41 1 0 3738 3778 381801156 381801196 2.250000e-08 71.3
17 TraesCS4D01G178000 chr1B 90.837 251 18 5 82 331 470294730 470294976 9.350000e-87 331.0
18 TraesCS4D01G178000 chr1B 92.381 105 5 3 1 104 241129027 241129129 3.640000e-31 147.0
19 TraesCS4D01G178000 chr1B 89.655 58 4 1 3900 3957 302789766 302789711 6.260000e-09 73.1
20 TraesCS4D01G178000 chr1A 89.243 251 27 0 82 332 44477721 44477471 9.420000e-82 315.0
21 TraesCS4D01G178000 chr1A 89.655 116 12 0 345 460 369574821 369574936 1.010000e-31 148.0
22 TraesCS4D01G178000 chr1A 92.308 52 2 1 3900 3951 268916577 268916626 6.260000e-09 73.1
23 TraesCS4D01G178000 chr7A 89.200 250 27 0 82 331 307374890 307374641 3.390000e-81 313.0
24 TraesCS4D01G178000 chr7A 98.837 86 1 0 1 86 359831038 359830953 2.170000e-33 154.0
25 TraesCS4D01G178000 chr7A 85.135 74 8 2 3738 3811 730191201 730191271 6.260000e-09 73.1
26 TraesCS4D01G178000 chr7A 85.135 74 8 2 3738 3811 730202595 730202665 6.260000e-09 73.1
27 TraesCS4D01G178000 chr5A 89.200 250 27 0 82 331 494285494 494285245 3.390000e-81 313.0
28 TraesCS4D01G178000 chr5A 84.615 104 15 1 358 461 44406322 44406424 7.980000e-18 102.0
29 TraesCS4D01G178000 chr5A 95.349 43 2 0 3738 3780 6483788 6483746 8.100000e-08 69.4
30 TraesCS4D01G178000 chr1D 88.976 254 26 1 82 333 193424771 193424518 3.390000e-81 313.0
31 TraesCS4D01G178000 chr1D 92.308 52 2 1 3900 3951 212503019 212503068 6.260000e-09 73.1
32 TraesCS4D01G178000 chr2B 88.889 252 27 1 81 332 490797739 490797489 4.380000e-80 309.0
33 TraesCS4D01G178000 chr2B 94.118 51 1 2 3897 3947 68141101 68141149 4.840000e-10 76.8
34 TraesCS4D01G178000 chr7D 97.778 90 2 0 1 90 339424495 339424406 6.040000e-34 156.0
35 TraesCS4D01G178000 chrUn 98.837 86 1 0 1 86 121329633 121329718 2.170000e-33 154.0
36 TraesCS4D01G178000 chrUn 96.739 92 1 2 1 92 405133770 405133859 7.820000e-33 152.0
37 TraesCS4D01G178000 chrUn 93.204 103 4 3 1 101 200516221 200516322 1.010000e-31 148.0
38 TraesCS4D01G178000 chrUn 94.737 57 3 0 4418 4474 414074371 414074315 6.220000e-14 89.8
39 TraesCS4D01G178000 chr3A 97.753 89 2 0 1 89 318439868 318439780 2.170000e-33 154.0
40 TraesCS4D01G178000 chr6B 96.739 92 2 1 1 92 324373234 324373144 7.820000e-33 152.0
41 TraesCS4D01G178000 chr6B 96.739 92 1 2 1 92 329738111 329738200 7.820000e-33 152.0
42 TraesCS4D01G178000 chr6B 97.561 41 1 0 3738 3778 678605910 678605870 2.250000e-08 71.3
43 TraesCS4D01G178000 chr5B 86.923 130 17 0 333 462 494737923 494737794 3.640000e-31 147.0
44 TraesCS4D01G178000 chr2A 86.111 72 9 1 3738 3809 683725670 683725740 4.840000e-10 76.8
45 TraesCS4D01G178000 chr6A 88.889 63 4 3 3902 3964 39263119 39263060 1.740000e-09 75.0
46 TraesCS4D01G178000 chr3D 95.455 44 2 0 415 458 520359282 520359239 2.250000e-08 71.3
47 TraesCS4D01G178000 chr6D 91.837 49 3 1 3727 3775 406201119 406201166 2.910000e-07 67.6
48 TraesCS4D01G178000 chr6D 88.462 52 5 1 415 465 291974761 291974710 1.350000e-05 62.1
49 TraesCS4D01G178000 chr3B 88.462 52 6 0 3727 3778 819794273 819794324 3.770000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G178000 chr4D 309509092 309513602 4510 True 8331.000000 8331 100.000000 1 4511 1 chr4D.!!$R1 4510
1 TraesCS4D01G178000 chr4A 165707724 165712475 4751 False 1508.000000 4632 92.437500 461 4511 4 chr4A.!!$F2 4050
2 TraesCS4D01G178000 chr4B 386216860 386226803 9943 True 949.571429 3803 92.014571 461 4511 7 chr4B.!!$R1 4050

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.031585 CGTCAAAGTCGTCTCCACCA 59.968 55.0 0.00 0.0 0.0 4.17 F
680 683 0.044244 TTCCTTCCCCTCTCCCGAAT 59.956 55.0 0.00 0.0 0.0 3.34 F
1121 1264 0.031721 CGCTAATCCGTCACTACCCC 59.968 60.0 0.00 0.0 0.0 4.95 F
2621 3618 0.118346 ATAGATGCCCGGACCCCATA 59.882 55.0 0.73 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1118 1261 0.108138 CAGTCAGCGGTAGAAAGGGG 60.108 60.0 0.00 0.00 0.00 4.79 R
2621 3618 1.840181 CGTACATGCTGCGTGTCTAT 58.160 50.0 28.98 9.19 35.12 1.98 R
2629 3626 2.549633 AAATTCTGCGTACATGCTGC 57.450 45.0 0.00 0.00 34.22 5.25 R
3966 5405 0.613260 TATGAGAGGGCACACACCAC 59.387 55.0 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.438583 GTAGTCGGATCGTCAAAGTCG 58.561 52.381 0.00 0.00 0.00 4.18
21 22 0.879765 AGTCGGATCGTCAAAGTCGT 59.120 50.000 0.00 0.00 0.00 4.34
22 23 1.135746 AGTCGGATCGTCAAAGTCGTC 60.136 52.381 0.00 0.00 0.00 4.20
23 24 1.135746 GTCGGATCGTCAAAGTCGTCT 60.136 52.381 0.00 0.00 0.00 4.18
24 25 1.129998 TCGGATCGTCAAAGTCGTCTC 59.870 52.381 0.00 0.00 0.00 3.36
25 26 1.794437 CGGATCGTCAAAGTCGTCTCC 60.794 57.143 0.00 0.00 0.00 3.71
26 27 1.201647 GGATCGTCAAAGTCGTCTCCA 59.798 52.381 0.00 0.00 34.30 3.86
27 28 2.251893 GATCGTCAAAGTCGTCTCCAC 58.748 52.381 0.00 0.00 0.00 4.02
28 29 0.313043 TCGTCAAAGTCGTCTCCACC 59.687 55.000 0.00 0.00 0.00 4.61
29 30 0.031585 CGTCAAAGTCGTCTCCACCA 59.968 55.000 0.00 0.00 0.00 4.17
30 31 1.537348 CGTCAAAGTCGTCTCCACCAA 60.537 52.381 0.00 0.00 0.00 3.67
31 32 2.557317 GTCAAAGTCGTCTCCACCAAA 58.443 47.619 0.00 0.00 0.00 3.28
32 33 3.139077 GTCAAAGTCGTCTCCACCAAAT 58.861 45.455 0.00 0.00 0.00 2.32
33 34 3.186613 GTCAAAGTCGTCTCCACCAAATC 59.813 47.826 0.00 0.00 0.00 2.17
34 35 2.080286 AAGTCGTCTCCACCAAATCG 57.920 50.000 0.00 0.00 0.00 3.34
35 36 1.254026 AGTCGTCTCCACCAAATCGA 58.746 50.000 0.00 0.00 0.00 3.59
36 37 1.825474 AGTCGTCTCCACCAAATCGAT 59.175 47.619 0.00 0.00 0.00 3.59
37 38 3.021695 AGTCGTCTCCACCAAATCGATA 58.978 45.455 0.00 0.00 0.00 2.92
38 39 3.066900 AGTCGTCTCCACCAAATCGATAG 59.933 47.826 0.00 0.00 0.00 2.08
39 40 3.021695 TCGTCTCCACCAAATCGATAGT 58.978 45.455 0.00 0.00 37.40 2.12
40 41 3.446161 TCGTCTCCACCAAATCGATAGTT 59.554 43.478 0.00 0.00 37.40 2.24
41 42 4.641541 TCGTCTCCACCAAATCGATAGTTA 59.358 41.667 0.00 0.00 37.40 2.24
42 43 5.301045 TCGTCTCCACCAAATCGATAGTTAT 59.699 40.000 0.00 0.00 37.40 1.89
43 44 5.629849 CGTCTCCACCAAATCGATAGTTATC 59.370 44.000 0.00 0.00 37.40 1.75
44 45 6.513180 GTCTCCACCAAATCGATAGTTATCA 58.487 40.000 0.00 0.00 32.98 2.15
45 46 7.155328 GTCTCCACCAAATCGATAGTTATCAT 58.845 38.462 0.00 0.00 32.98 2.45
46 47 7.329717 GTCTCCACCAAATCGATAGTTATCATC 59.670 40.741 0.00 0.00 32.98 2.92
47 48 7.233553 TCTCCACCAAATCGATAGTTATCATCT 59.766 37.037 0.00 0.00 32.98 2.90
48 49 7.378966 TCCACCAAATCGATAGTTATCATCTC 58.621 38.462 0.00 0.00 32.98 2.75
49 50 7.015195 TCCACCAAATCGATAGTTATCATCTCA 59.985 37.037 0.00 0.00 32.98 3.27
50 51 7.821359 CCACCAAATCGATAGTTATCATCTCAT 59.179 37.037 0.00 0.00 32.98 2.90
51 52 8.867935 CACCAAATCGATAGTTATCATCTCATC 58.132 37.037 0.00 0.00 32.98 2.92
52 53 7.757173 ACCAAATCGATAGTTATCATCTCATCG 59.243 37.037 0.00 0.00 37.27 3.84
53 54 7.970614 CCAAATCGATAGTTATCATCTCATCGA 59.029 37.037 0.00 6.90 45.57 3.59
54 55 9.346725 CAAATCGATAGTTATCATCTCATCGAA 57.653 33.333 0.00 0.00 44.92 3.71
55 56 9.914131 AAATCGATAGTTATCATCTCATCGAAA 57.086 29.630 0.00 0.00 44.92 3.46
56 57 9.566530 AATCGATAGTTATCATCTCATCGAAAG 57.433 33.333 0.00 0.00 44.92 2.62
57 58 8.324163 TCGATAGTTATCATCTCATCGAAAGA 57.676 34.615 3.63 3.63 40.70 2.52
58 59 8.951243 TCGATAGTTATCATCTCATCGAAAGAT 58.049 33.333 7.64 7.64 40.70 2.40
59 60 9.220635 CGATAGTTATCATCTCATCGAAAGATC 57.779 37.037 9.95 0.00 39.59 2.75
60 61 9.220635 GATAGTTATCATCTCATCGAAAGATCG 57.779 37.037 9.95 7.22 39.59 3.69
69 70 3.834732 CGAAAGATCGGGACACCTT 57.165 52.632 0.00 0.00 45.32 3.50
70 71 1.641577 CGAAAGATCGGGACACCTTC 58.358 55.000 0.00 0.00 45.32 3.46
71 72 1.641577 GAAAGATCGGGACACCTTCG 58.358 55.000 0.00 0.00 33.28 3.79
72 73 0.391263 AAAGATCGGGACACCTTCGC 60.391 55.000 0.00 0.00 33.28 4.70
73 74 2.202892 GATCGGGACACCTTCGCC 60.203 66.667 0.00 0.00 33.49 5.54
74 75 2.683933 ATCGGGACACCTTCGCCT 60.684 61.111 0.00 0.00 33.49 5.52
75 76 2.630592 GATCGGGACACCTTCGCCTC 62.631 65.000 0.00 0.00 33.49 4.70
76 77 3.382832 CGGGACACCTTCGCCTCT 61.383 66.667 0.00 0.00 33.49 3.69
77 78 2.050350 CGGGACACCTTCGCCTCTA 61.050 63.158 0.00 0.00 33.49 2.43
78 79 1.392710 CGGGACACCTTCGCCTCTAT 61.393 60.000 0.00 0.00 33.49 1.98
79 80 0.389757 GGGACACCTTCGCCTCTATC 59.610 60.000 0.00 0.00 0.00 2.08
80 81 1.112113 GGACACCTTCGCCTCTATCA 58.888 55.000 0.00 0.00 0.00 2.15
81 82 1.480954 GGACACCTTCGCCTCTATCAA 59.519 52.381 0.00 0.00 0.00 2.57
82 83 2.093658 GGACACCTTCGCCTCTATCAAA 60.094 50.000 0.00 0.00 0.00 2.69
83 84 3.190874 GACACCTTCGCCTCTATCAAAG 58.809 50.000 0.00 0.00 0.00 2.77
84 85 2.832129 ACACCTTCGCCTCTATCAAAGA 59.168 45.455 0.00 0.00 0.00 2.52
85 86 3.260884 ACACCTTCGCCTCTATCAAAGAA 59.739 43.478 0.00 0.00 32.46 2.52
86 87 3.868077 CACCTTCGCCTCTATCAAAGAAG 59.132 47.826 0.00 0.00 35.99 2.85
87 88 3.462021 CCTTCGCCTCTATCAAAGAAGG 58.538 50.000 7.52 7.52 45.56 3.46
88 89 4.392921 CTTCGCCTCTATCAAAGAAGGA 57.607 45.455 0.00 0.00 32.46 3.36
89 90 4.759782 CTTCGCCTCTATCAAAGAAGGAA 58.240 43.478 0.00 0.00 32.46 3.36
90 91 5.359194 TTCGCCTCTATCAAAGAAGGAAT 57.641 39.130 0.00 0.00 32.46 3.01
91 92 4.697514 TCGCCTCTATCAAAGAAGGAATG 58.302 43.478 0.00 0.00 32.46 2.67
92 93 4.162320 TCGCCTCTATCAAAGAAGGAATGT 59.838 41.667 0.00 0.00 32.46 2.71
93 94 4.878397 CGCCTCTATCAAAGAAGGAATGTT 59.122 41.667 0.00 0.00 32.46 2.71
94 95 6.049149 CGCCTCTATCAAAGAAGGAATGTTA 58.951 40.000 0.00 0.00 32.46 2.41
95 96 6.201806 CGCCTCTATCAAAGAAGGAATGTTAG 59.798 42.308 0.00 0.00 32.46 2.34
96 97 7.275920 GCCTCTATCAAAGAAGGAATGTTAGA 58.724 38.462 0.00 0.00 32.46 2.10
97 98 7.440856 GCCTCTATCAAAGAAGGAATGTTAGAG 59.559 40.741 10.83 10.83 40.20 2.43
98 99 8.700051 CCTCTATCAAAGAAGGAATGTTAGAGA 58.300 37.037 16.16 0.00 41.58 3.10
99 100 9.528018 CTCTATCAAAGAAGGAATGTTAGAGAC 57.472 37.037 11.81 0.00 41.58 3.36
100 101 9.261035 TCTATCAAAGAAGGAATGTTAGAGACT 57.739 33.333 0.00 0.00 0.00 3.24
101 102 9.883142 CTATCAAAGAAGGAATGTTAGAGACTT 57.117 33.333 0.00 0.00 0.00 3.01
103 104 8.980481 TCAAAGAAGGAATGTTAGAGACTTTT 57.020 30.769 0.00 0.00 0.00 2.27
190 191 9.636879 TCACCATCAATTTGTTTGTATGTAATG 57.363 29.630 0.00 0.00 36.65 1.90
191 192 9.636879 CACCATCAATTTGTTTGTATGTAATGA 57.363 29.630 0.00 0.00 36.65 2.57
271 272 9.688592 GCCTTAATCATATGAATTGAAAGAAGG 57.311 33.333 9.99 10.77 35.48 3.46
272 273 9.688592 CCTTAATCATATGAATTGAAAGAAGGC 57.311 33.333 9.99 0.00 30.34 4.35
276 277 7.707624 TCATATGAATTGAAAGAAGGCAAGT 57.292 32.000 1.98 0.00 0.00 3.16
277 278 8.125978 TCATATGAATTGAAAGAAGGCAAGTT 57.874 30.769 1.98 0.00 0.00 2.66
278 279 9.241919 TCATATGAATTGAAAGAAGGCAAGTTA 57.758 29.630 1.98 0.00 0.00 2.24
279 280 9.512435 CATATGAATTGAAAGAAGGCAAGTTAG 57.488 33.333 0.00 0.00 0.00 2.34
280 281 6.331369 TGAATTGAAAGAAGGCAAGTTAGG 57.669 37.500 0.00 0.00 0.00 2.69
281 282 5.243730 TGAATTGAAAGAAGGCAAGTTAGGG 59.756 40.000 0.00 0.00 0.00 3.53
282 283 4.447138 TTGAAAGAAGGCAAGTTAGGGA 57.553 40.909 0.00 0.00 0.00 4.20
283 284 4.447138 TGAAAGAAGGCAAGTTAGGGAA 57.553 40.909 0.00 0.00 0.00 3.97
284 285 4.998051 TGAAAGAAGGCAAGTTAGGGAAT 58.002 39.130 0.00 0.00 0.00 3.01
285 286 5.393866 TGAAAGAAGGCAAGTTAGGGAATT 58.606 37.500 0.00 0.00 0.00 2.17
286 287 5.243730 TGAAAGAAGGCAAGTTAGGGAATTG 59.756 40.000 0.00 0.00 0.00 2.32
287 288 4.388577 AGAAGGCAAGTTAGGGAATTGT 57.611 40.909 0.00 0.00 0.00 2.71
288 289 5.514500 AGAAGGCAAGTTAGGGAATTGTA 57.486 39.130 0.00 0.00 0.00 2.41
289 290 5.501156 AGAAGGCAAGTTAGGGAATTGTAG 58.499 41.667 0.00 0.00 0.00 2.74
290 291 4.929146 AGGCAAGTTAGGGAATTGTAGT 57.071 40.909 0.00 0.00 0.00 2.73
291 292 5.256806 AGGCAAGTTAGGGAATTGTAGTT 57.743 39.130 0.00 0.00 0.00 2.24
292 293 5.641155 AGGCAAGTTAGGGAATTGTAGTTT 58.359 37.500 0.00 0.00 0.00 2.66
293 294 5.710567 AGGCAAGTTAGGGAATTGTAGTTTC 59.289 40.000 0.00 0.00 0.00 2.78
294 295 5.710567 GGCAAGTTAGGGAATTGTAGTTTCT 59.289 40.000 0.00 0.00 0.00 2.52
295 296 6.127980 GGCAAGTTAGGGAATTGTAGTTTCTC 60.128 42.308 0.00 0.00 0.00 2.87
296 297 6.127980 GCAAGTTAGGGAATTGTAGTTTCTCC 60.128 42.308 0.00 0.00 0.00 3.71
297 298 6.697641 AGTTAGGGAATTGTAGTTTCTCCA 57.302 37.500 0.00 0.00 0.00 3.86
298 299 7.086685 AGTTAGGGAATTGTAGTTTCTCCAA 57.913 36.000 0.00 0.00 0.00 3.53
299 300 6.940867 AGTTAGGGAATTGTAGTTTCTCCAAC 59.059 38.462 0.00 0.00 35.32 3.77
301 302 5.953571 AGGGAATTGTAGTTTCTCCAACTT 58.046 37.500 0.00 0.00 43.89 2.66
302 303 6.373759 AGGGAATTGTAGTTTCTCCAACTTT 58.626 36.000 0.00 0.00 43.89 2.66
303 304 6.490381 AGGGAATTGTAGTTTCTCCAACTTTC 59.510 38.462 0.00 0.00 43.89 2.62
304 305 6.294564 GGGAATTGTAGTTTCTCCAACTTTCC 60.295 42.308 7.13 7.13 43.89 3.13
305 306 6.490381 GGAATTGTAGTTTCTCCAACTTTCCT 59.510 38.462 7.98 0.00 43.89 3.36
306 307 7.014326 GGAATTGTAGTTTCTCCAACTTTCCTT 59.986 37.037 7.98 0.00 43.89 3.36
307 308 6.937436 TTGTAGTTTCTCCAACTTTCCTTC 57.063 37.500 0.00 0.00 43.89 3.46
308 309 6.248569 TGTAGTTTCTCCAACTTTCCTTCT 57.751 37.500 0.00 0.00 43.89 2.85
309 310 6.659824 TGTAGTTTCTCCAACTTTCCTTCTT 58.340 36.000 0.00 0.00 43.89 2.52
310 311 7.798071 TGTAGTTTCTCCAACTTTCCTTCTTA 58.202 34.615 0.00 0.00 43.89 2.10
311 312 8.269317 TGTAGTTTCTCCAACTTTCCTTCTTAA 58.731 33.333 0.00 0.00 43.89 1.85
312 313 9.286170 GTAGTTTCTCCAACTTTCCTTCTTAAT 57.714 33.333 0.00 0.00 43.89 1.40
313 314 8.171164 AGTTTCTCCAACTTTCCTTCTTAATG 57.829 34.615 0.00 0.00 43.89 1.90
314 315 6.575162 TTCTCCAACTTTCCTTCTTAATGC 57.425 37.500 0.00 0.00 0.00 3.56
315 316 5.010282 TCTCCAACTTTCCTTCTTAATGCC 58.990 41.667 0.00 0.00 0.00 4.40
316 317 4.735369 TCCAACTTTCCTTCTTAATGCCA 58.265 39.130 0.00 0.00 0.00 4.92
317 318 5.144100 TCCAACTTTCCTTCTTAATGCCAA 58.856 37.500 0.00 0.00 0.00 4.52
318 319 5.600484 TCCAACTTTCCTTCTTAATGCCAAA 59.400 36.000 0.00 0.00 0.00 3.28
319 320 5.928264 CCAACTTTCCTTCTTAATGCCAAAG 59.072 40.000 0.00 0.00 0.00 2.77
320 321 5.728637 ACTTTCCTTCTTAATGCCAAAGG 57.271 39.130 0.00 0.00 39.73 3.11
321 322 5.393866 ACTTTCCTTCTTAATGCCAAAGGA 58.606 37.500 0.00 0.00 44.20 3.36
322 323 6.019108 ACTTTCCTTCTTAATGCCAAAGGAT 58.981 36.000 3.70 0.00 44.97 3.24
323 324 6.153510 ACTTTCCTTCTTAATGCCAAAGGATC 59.846 38.462 3.70 0.00 44.97 3.36
324 325 4.199310 TCCTTCTTAATGCCAAAGGATCG 58.801 43.478 0.00 0.00 41.74 3.69
325 326 4.080582 TCCTTCTTAATGCCAAAGGATCGA 60.081 41.667 0.00 0.00 41.74 3.59
326 327 4.274459 CCTTCTTAATGCCAAAGGATCGAG 59.726 45.833 0.00 0.00 40.63 4.04
327 328 4.487714 TCTTAATGCCAAAGGATCGAGT 57.512 40.909 0.00 0.00 0.00 4.18
328 329 4.843728 TCTTAATGCCAAAGGATCGAGTT 58.156 39.130 0.00 0.00 0.00 3.01
329 330 4.876107 TCTTAATGCCAAAGGATCGAGTTC 59.124 41.667 0.00 0.00 0.00 3.01
330 331 2.044123 ATGCCAAAGGATCGAGTTCC 57.956 50.000 0.00 0.00 35.90 3.62
331 332 0.391130 TGCCAAAGGATCGAGTTCCG 60.391 55.000 0.00 0.00 40.94 4.30
332 333 0.391263 GCCAAAGGATCGAGTTCCGT 60.391 55.000 0.00 0.00 40.94 4.69
333 334 1.134907 GCCAAAGGATCGAGTTCCGTA 60.135 52.381 0.00 0.00 40.94 4.02
334 335 2.537401 CCAAAGGATCGAGTTCCGTAC 58.463 52.381 0.00 0.00 40.94 3.67
335 336 2.094390 CCAAAGGATCGAGTTCCGTACA 60.094 50.000 0.00 0.00 40.94 2.90
336 337 3.179830 CAAAGGATCGAGTTCCGTACAG 58.820 50.000 0.00 0.00 40.94 2.74
337 338 2.125773 AGGATCGAGTTCCGTACAGT 57.874 50.000 0.00 0.00 40.94 3.55
338 339 3.272574 AGGATCGAGTTCCGTACAGTA 57.727 47.619 0.00 0.00 40.94 2.74
339 340 2.941720 AGGATCGAGTTCCGTACAGTAC 59.058 50.000 0.00 0.00 40.94 2.73
340 341 2.032675 GGATCGAGTTCCGTACAGTACC 59.967 54.545 5.07 0.00 39.75 3.34
341 342 2.479566 TCGAGTTCCGTACAGTACCT 57.520 50.000 5.07 0.00 39.75 3.08
342 343 2.079158 TCGAGTTCCGTACAGTACCTG 58.921 52.381 5.07 0.00 39.75 4.00
343 344 1.467035 CGAGTTCCGTACAGTACCTGC 60.467 57.143 5.07 0.00 34.37 4.85
344 345 1.817447 GAGTTCCGTACAGTACCTGCT 59.183 52.381 5.07 0.00 34.37 4.24
345 346 3.012518 GAGTTCCGTACAGTACCTGCTA 58.987 50.000 5.07 0.00 34.37 3.49
346 347 3.629087 AGTTCCGTACAGTACCTGCTAT 58.371 45.455 5.07 0.00 34.37 2.97
347 348 4.785301 AGTTCCGTACAGTACCTGCTATA 58.215 43.478 5.07 0.00 34.37 1.31
348 349 4.820716 AGTTCCGTACAGTACCTGCTATAG 59.179 45.833 5.07 0.00 34.37 1.31
349 350 4.428294 TCCGTACAGTACCTGCTATAGT 57.572 45.455 5.07 0.00 34.37 2.12
350 351 5.551305 TCCGTACAGTACCTGCTATAGTA 57.449 43.478 5.07 0.00 34.37 1.82
351 352 5.545588 TCCGTACAGTACCTGCTATAGTAG 58.454 45.833 10.66 10.66 34.37 2.57
352 353 5.305386 TCCGTACAGTACCTGCTATAGTAGA 59.695 44.000 18.42 0.00 34.37 2.59
353 354 6.013898 TCCGTACAGTACCTGCTATAGTAGAT 60.014 42.308 18.42 4.58 34.37 1.98
354 355 7.179160 TCCGTACAGTACCTGCTATAGTAGATA 59.821 40.741 18.42 3.49 34.37 1.98
355 356 7.821359 CCGTACAGTACCTGCTATAGTAGATAA 59.179 40.741 18.42 1.68 34.37 1.75
356 357 9.212641 CGTACAGTACCTGCTATAGTAGATAAA 57.787 37.037 18.42 0.00 34.37 1.40
364 365 9.589461 ACCTGCTATAGTAGATAAATACAGTGT 57.411 33.333 18.42 0.00 0.00 3.55
368 369 9.063739 GCTATAGTAGATAAATACAGTGTTCGC 57.936 37.037 0.00 0.00 0.00 4.70
372 373 7.993101 AGTAGATAAATACAGTGTTCGCTACA 58.007 34.615 0.00 0.00 0.00 2.74
373 374 8.464404 AGTAGATAAATACAGTGTTCGCTACAA 58.536 33.333 0.00 0.00 38.80 2.41
374 375 9.245962 GTAGATAAATACAGTGTTCGCTACAAT 57.754 33.333 0.00 0.00 38.80 2.71
376 377 9.245962 AGATAAATACAGTGTTCGCTACAATAC 57.754 33.333 0.00 0.00 38.80 1.89
377 378 9.245962 GATAAATACAGTGTTCGCTACAATACT 57.754 33.333 0.00 0.00 38.80 2.12
378 379 7.521509 AAATACAGTGTTCGCTACAATACTC 57.478 36.000 0.00 0.00 38.80 2.59
379 380 3.499048 ACAGTGTTCGCTACAATACTCG 58.501 45.455 0.00 0.00 38.80 4.18
380 381 3.057736 ACAGTGTTCGCTACAATACTCGT 60.058 43.478 0.00 0.00 38.80 4.18
381 382 3.300853 CAGTGTTCGCTACAATACTCGTG 59.699 47.826 0.00 0.00 38.80 4.35
382 383 2.597305 GTGTTCGCTACAATACTCGTGG 59.403 50.000 0.00 0.00 38.80 4.94
383 384 1.587034 GTTCGCTACAATACTCGTGGC 59.413 52.381 0.00 0.00 37.49 5.01
384 385 1.100510 TCGCTACAATACTCGTGGCT 58.899 50.000 0.00 0.00 38.58 4.75
385 386 1.475280 TCGCTACAATACTCGTGGCTT 59.525 47.619 0.00 0.00 38.58 4.35
386 387 2.094390 TCGCTACAATACTCGTGGCTTT 60.094 45.455 0.00 0.00 38.58 3.51
387 388 2.281762 CGCTACAATACTCGTGGCTTTC 59.718 50.000 0.00 0.00 38.58 2.62
388 389 2.608090 GCTACAATACTCGTGGCTTTCC 59.392 50.000 0.00 0.00 37.81 3.13
389 390 3.679083 GCTACAATACTCGTGGCTTTCCT 60.679 47.826 0.00 0.00 37.81 3.36
390 391 3.418684 ACAATACTCGTGGCTTTCCTT 57.581 42.857 0.00 0.00 0.00 3.36
391 392 3.335579 ACAATACTCGTGGCTTTCCTTC 58.664 45.455 0.00 0.00 0.00 3.46
392 393 3.008049 ACAATACTCGTGGCTTTCCTTCT 59.992 43.478 0.00 0.00 0.00 2.85
393 394 3.528597 ATACTCGTGGCTTTCCTTCTC 57.471 47.619 0.00 0.00 0.00 2.87
394 395 1.343069 ACTCGTGGCTTTCCTTCTCT 58.657 50.000 0.00 0.00 0.00 3.10
395 396 1.001406 ACTCGTGGCTTTCCTTCTCTG 59.999 52.381 0.00 0.00 0.00 3.35
396 397 1.001406 CTCGTGGCTTTCCTTCTCTGT 59.999 52.381 0.00 0.00 0.00 3.41
397 398 1.416401 TCGTGGCTTTCCTTCTCTGTT 59.584 47.619 0.00 0.00 0.00 3.16
398 399 2.158813 TCGTGGCTTTCCTTCTCTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
399 400 2.618709 CGTGGCTTTCCTTCTCTGTTTT 59.381 45.455 0.00 0.00 0.00 2.43
400 401 3.813166 CGTGGCTTTCCTTCTCTGTTTTA 59.187 43.478 0.00 0.00 0.00 1.52
401 402 4.319549 CGTGGCTTTCCTTCTCTGTTTTAC 60.320 45.833 0.00 0.00 0.00 2.01
402 403 4.578928 GTGGCTTTCCTTCTCTGTTTTACA 59.421 41.667 0.00 0.00 0.00 2.41
403 404 4.578928 TGGCTTTCCTTCTCTGTTTTACAC 59.421 41.667 0.00 0.00 0.00 2.90
404 405 4.822350 GGCTTTCCTTCTCTGTTTTACACT 59.178 41.667 0.00 0.00 0.00 3.55
405 406 5.995897 GGCTTTCCTTCTCTGTTTTACACTA 59.004 40.000 0.00 0.00 0.00 2.74
406 407 6.147985 GGCTTTCCTTCTCTGTTTTACACTAG 59.852 42.308 0.00 0.00 0.00 2.57
407 408 6.929606 GCTTTCCTTCTCTGTTTTACACTAGA 59.070 38.462 0.00 0.00 0.00 2.43
408 409 7.604545 GCTTTCCTTCTCTGTTTTACACTAGAT 59.395 37.037 0.00 0.00 0.00 1.98
409 410 9.495572 CTTTCCTTCTCTGTTTTACACTAGATT 57.504 33.333 0.00 0.00 0.00 2.40
410 411 8.833231 TTCCTTCTCTGTTTTACACTAGATTG 57.167 34.615 0.00 0.00 0.00 2.67
411 412 6.874134 TCCTTCTCTGTTTTACACTAGATTGC 59.126 38.462 0.00 0.00 0.00 3.56
412 413 6.650807 CCTTCTCTGTTTTACACTAGATTGCA 59.349 38.462 0.00 0.00 0.00 4.08
413 414 7.148507 CCTTCTCTGTTTTACACTAGATTGCAG 60.149 40.741 0.00 0.00 0.00 4.41
414 415 6.759272 TCTCTGTTTTACACTAGATTGCAGT 58.241 36.000 0.00 0.00 0.00 4.40
424 425 5.895928 CACTAGATTGCAGTGTAGCTTAGA 58.104 41.667 12.58 0.00 38.86 2.10
425 426 6.511416 CACTAGATTGCAGTGTAGCTTAGAT 58.489 40.000 12.58 0.00 38.86 1.98
426 427 6.420306 CACTAGATTGCAGTGTAGCTTAGATG 59.580 42.308 12.58 0.24 38.86 2.90
427 428 5.604758 AGATTGCAGTGTAGCTTAGATGA 57.395 39.130 0.00 0.00 34.99 2.92
428 429 5.355596 AGATTGCAGTGTAGCTTAGATGAC 58.644 41.667 0.00 0.00 34.99 3.06
429 430 4.808414 TTGCAGTGTAGCTTAGATGACT 57.192 40.909 0.00 0.00 34.99 3.41
430 431 4.808414 TGCAGTGTAGCTTAGATGACTT 57.192 40.909 0.00 0.00 34.99 3.01
431 432 4.748892 TGCAGTGTAGCTTAGATGACTTC 58.251 43.478 0.00 0.00 34.99 3.01
432 433 4.464244 TGCAGTGTAGCTTAGATGACTTCT 59.536 41.667 0.00 0.00 35.42 2.85
433 434 5.040635 GCAGTGTAGCTTAGATGACTTCTC 58.959 45.833 0.00 0.00 35.79 2.87
434 435 5.163561 GCAGTGTAGCTTAGATGACTTCTCT 60.164 44.000 0.00 0.00 35.79 3.10
435 436 6.494842 CAGTGTAGCTTAGATGACTTCTCTC 58.505 44.000 0.00 0.00 35.79 3.20
436 437 5.592688 AGTGTAGCTTAGATGACTTCTCTCC 59.407 44.000 0.00 0.00 35.79 3.71
437 438 5.592688 GTGTAGCTTAGATGACTTCTCTCCT 59.407 44.000 0.00 0.00 35.79 3.69
438 439 6.096282 GTGTAGCTTAGATGACTTCTCTCCTT 59.904 42.308 0.00 0.00 35.79 3.36
439 440 5.852282 AGCTTAGATGACTTCTCTCCTTC 57.148 43.478 0.00 0.00 35.79 3.46
440 441 5.268387 AGCTTAGATGACTTCTCTCCTTCA 58.732 41.667 0.00 0.00 35.79 3.02
441 442 5.898972 AGCTTAGATGACTTCTCTCCTTCAT 59.101 40.000 0.00 0.00 35.79 2.57
442 443 5.984926 GCTTAGATGACTTCTCTCCTTCATG 59.015 44.000 0.00 0.00 35.79 3.07
443 444 6.406849 GCTTAGATGACTTCTCTCCTTCATGT 60.407 42.308 0.00 0.00 35.79 3.21
444 445 7.487822 TTAGATGACTTCTCTCCTTCATGTT 57.512 36.000 0.00 0.00 35.79 2.71
445 446 8.595362 TTAGATGACTTCTCTCCTTCATGTTA 57.405 34.615 0.00 0.00 35.79 2.41
446 447 7.111247 AGATGACTTCTCTCCTTCATGTTAG 57.889 40.000 0.00 0.00 0.00 2.34
447 448 6.894654 AGATGACTTCTCTCCTTCATGTTAGA 59.105 38.462 0.00 0.00 0.00 2.10
448 449 6.522625 TGACTTCTCTCCTTCATGTTAGAG 57.477 41.667 0.00 1.71 37.42 2.43
449 450 5.420421 TGACTTCTCTCCTTCATGTTAGAGG 59.580 44.000 12.86 8.04 36.85 3.69
450 451 5.584913 ACTTCTCTCCTTCATGTTAGAGGA 58.415 41.667 12.86 10.87 36.85 3.71
451 452 6.201591 ACTTCTCTCCTTCATGTTAGAGGAT 58.798 40.000 12.86 2.09 36.85 3.24
452 453 6.323739 ACTTCTCTCCTTCATGTTAGAGGATC 59.676 42.308 12.86 0.00 36.85 3.36
453 454 5.144100 TCTCTCCTTCATGTTAGAGGATCC 58.856 45.833 2.48 2.48 36.85 3.36
454 455 4.883759 TCTCCTTCATGTTAGAGGATCCA 58.116 43.478 15.82 0.00 33.66 3.41
455 456 4.651503 TCTCCTTCATGTTAGAGGATCCAC 59.348 45.833 15.82 8.01 33.66 4.02
456 457 4.624913 TCCTTCATGTTAGAGGATCCACT 58.375 43.478 16.41 16.41 33.66 4.00
457 458 5.032846 TCCTTCATGTTAGAGGATCCACTT 58.967 41.667 17.39 2.46 33.66 3.16
458 459 5.129485 TCCTTCATGTTAGAGGATCCACTTC 59.871 44.000 17.39 11.20 33.66 3.01
459 460 5.359194 TTCATGTTAGAGGATCCACTTCC 57.641 43.478 17.39 8.65 33.66 3.46
473 474 9.004231 AGGATCCACTTCCTATTTTAACTATGT 57.996 33.333 15.82 0.00 44.50 2.29
495 496 6.450545 TGTAGAGACTATATGTGCTCATTGC 58.549 40.000 6.57 0.00 43.25 3.56
505 506 3.563508 TGTGCTCATTGCGTTTGTATTG 58.436 40.909 0.00 0.00 46.63 1.90
628 631 5.490139 AAGAATAAGCATGTGATGTTCCG 57.510 39.130 0.00 0.00 0.00 4.30
629 632 4.517285 AGAATAAGCATGTGATGTTCCGT 58.483 39.130 0.00 0.00 0.00 4.69
630 633 4.572389 AGAATAAGCATGTGATGTTCCGTC 59.428 41.667 0.00 0.00 0.00 4.79
640 643 2.897326 TGATGTTCCGTCTTCTTCTCCA 59.103 45.455 0.00 0.00 0.00 3.86
642 645 1.000607 TGTTCCGTCTTCTTCTCCACG 60.001 52.381 0.00 0.00 0.00 4.94
667 670 4.946157 TCTTTGCATGATCCTTCTTCCTTC 59.054 41.667 0.00 0.00 0.00 3.46
680 683 0.044244 TTCCTTCCCCTCTCCCGAAT 59.956 55.000 0.00 0.00 0.00 3.34
781 911 3.812156 ATGTAGTTGCGCATACCAGTA 57.188 42.857 12.75 0.00 0.00 2.74
787 917 1.317431 TGCGCATACCAGTAGTCCGT 61.317 55.000 5.66 0.00 0.00 4.69
834 964 4.521146 AGGTCCTAATCTGAAATGCTGTG 58.479 43.478 0.00 0.00 0.00 3.66
846 976 0.250901 ATGCTGTGGTGAGTTGACCC 60.251 55.000 0.00 0.00 34.79 4.46
863 993 1.377725 CCAGATGTCCAGGCACACC 60.378 63.158 0.00 0.00 0.00 4.16
866 996 3.976701 GATGTCCAGGCACACCCCG 62.977 68.421 0.00 0.00 36.11 5.73
1064 1201 1.065410 AACCCCACCATGTGAGACCA 61.065 55.000 0.00 0.00 35.23 4.02
1096 1233 1.468985 CTCTCTCCTCCTCTCGCAAA 58.531 55.000 0.00 0.00 0.00 3.68
1101 1238 2.664081 CCTCCTCTCGCAAAGCCCT 61.664 63.158 0.00 0.00 0.00 5.19
1103 1240 2.510238 CCTCTCGCAAAGCCCTCG 60.510 66.667 0.00 0.00 0.00 4.63
1114 1257 1.756950 AGCCCTCGCTAATCCGTCA 60.757 57.895 0.00 0.00 46.08 4.35
1118 1261 1.001597 CCCTCGCTAATCCGTCACTAC 60.002 57.143 0.00 0.00 0.00 2.73
1120 1263 1.001597 CTCGCTAATCCGTCACTACCC 60.002 57.143 0.00 0.00 0.00 3.69
1121 1264 0.031721 CGCTAATCCGTCACTACCCC 59.968 60.000 0.00 0.00 0.00 4.95
1122 1265 1.411041 GCTAATCCGTCACTACCCCT 58.589 55.000 0.00 0.00 0.00 4.79
1123 1266 1.761198 GCTAATCCGTCACTACCCCTT 59.239 52.381 0.00 0.00 0.00 3.95
1125 1268 3.740452 GCTAATCCGTCACTACCCCTTTC 60.740 52.174 0.00 0.00 0.00 2.62
1126 1269 2.249309 ATCCGTCACTACCCCTTTCT 57.751 50.000 0.00 0.00 0.00 2.52
1127 1270 2.905415 TCCGTCACTACCCCTTTCTA 57.095 50.000 0.00 0.00 0.00 2.10
1128 1271 2.450476 TCCGTCACTACCCCTTTCTAC 58.550 52.381 0.00 0.00 0.00 2.59
1148 1295 1.138636 CGCTGACTGCTCGATCTGTG 61.139 60.000 3.38 0.00 40.11 3.66
1160 1307 0.379669 GATCTGTGGGATTGCGCTTG 59.620 55.000 9.73 0.00 34.33 4.01
1208 1371 2.223144 TGTTGCGATTTGTCACTACTGC 59.777 45.455 0.00 0.00 0.00 4.40
1224 1387 1.276421 ACTGCCTCGAGTAATTGTGCT 59.724 47.619 12.31 0.00 0.00 4.40
1228 1391 1.656652 CTCGAGTAATTGTGCTGGGG 58.343 55.000 3.62 0.00 0.00 4.96
1295 2218 3.222603 ACTAGTTTTGTCCCCAAGCTTG 58.777 45.455 19.93 19.93 0.00 4.01
1303 2226 2.266689 CCCAAGCTTGCCCAATGC 59.733 61.111 21.43 0.00 41.77 3.56
1429 2352 1.076549 AAATCGGAGCCTGGCCAAA 59.923 52.632 16.57 0.00 0.00 3.28
1448 2371 9.616156 TGGCCAAAAACGAAATAGAACTATATA 57.384 29.630 0.61 0.00 0.00 0.86
1504 2427 2.627945 TCACCGTGTTGGCTATTGATC 58.372 47.619 0.00 0.00 43.94 2.92
1574 2497 4.793216 GCTGGTATTGTGCTTTTATGTTCG 59.207 41.667 0.00 0.00 0.00 3.95
1581 2504 9.469239 GTATTGTGCTTTTATGTTCGTAGTAAC 57.531 33.333 0.00 0.00 0.00 2.50
2055 3030 9.975218 ATGGGTTTTGTTAGAATATTACAGAGT 57.025 29.630 0.00 0.00 0.00 3.24
2081 3076 0.388659 TCATGCTTGGGTTGTGTTGC 59.611 50.000 0.00 0.00 0.00 4.17
2277 3272 2.287644 GCGCACACATATACATGCTCAA 59.712 45.455 0.30 0.00 35.39 3.02
2339 3334 4.901849 TGTTACCATGCTAGAGCCTAAGAT 59.098 41.667 0.00 0.00 41.18 2.40
2370 3365 6.772078 AGCGCACACATATTAGTACTTTTTC 58.228 36.000 11.47 0.00 0.00 2.29
2441 3436 0.865769 CTTGGACTGCACGTACCAAC 59.134 55.000 0.00 0.00 37.46 3.77
2526 3523 6.559810 TGTGTGGAGTTGTTGAGTTTTATTG 58.440 36.000 0.00 0.00 0.00 1.90
2621 3618 0.118346 ATAGATGCCCGGACCCCATA 59.882 55.000 0.73 0.00 0.00 2.74
2629 3626 0.601558 CCGGACCCCATATAGACACG 59.398 60.000 0.00 0.00 0.00 4.49
2640 3637 1.840181 ATAGACACGCAGCATGTACG 58.160 50.000 0.00 0.00 39.31 3.67
2658 3655 7.535258 GCATGTACGCAGAATTTTATGATAAGG 59.465 37.037 0.00 0.00 0.00 2.69
3262 4259 1.156736 ACGCTGCAAAAGTTATCGCT 58.843 45.000 0.00 0.00 0.00 4.93
3629 4626 8.884323 AGGAACATTTGCTCTATCTATGGAATA 58.116 33.333 0.00 0.00 0.00 1.75
3748 4746 4.538746 ACTTGTTTAGTACTCCCTCTGC 57.461 45.455 0.00 0.00 34.56 4.26
3765 4869 4.437239 CTCTGCCCCATAATATAAGAGCG 58.563 47.826 0.00 0.00 0.00 5.03
3778 5217 9.826574 ATAATATAAGAGCGTTTTGGACACTAA 57.173 29.630 0.00 0.00 0.00 2.24
3779 5218 8.732746 AATATAAGAGCGTTTTGGACACTAAT 57.267 30.769 0.00 0.00 0.00 1.73
3780 5219 9.826574 AATATAAGAGCGTTTTGGACACTAATA 57.173 29.630 0.00 0.00 0.00 0.98
3781 5220 7.772332 ATAAGAGCGTTTTGGACACTAATAG 57.228 36.000 0.00 0.00 0.00 1.73
3784 5223 3.933332 AGCGTTTTGGACACTAATAGCTC 59.067 43.478 0.00 0.00 0.00 4.09
3785 5224 3.933332 GCGTTTTGGACACTAATAGCTCT 59.067 43.478 0.00 0.00 0.00 4.09
3788 5227 6.455246 GCGTTTTGGACACTAATAGCTCTTAC 60.455 42.308 0.00 0.00 0.00 2.34
3789 5228 6.588756 CGTTTTGGACACTAATAGCTCTTACA 59.411 38.462 0.00 0.00 0.00 2.41
3790 5229 7.277981 CGTTTTGGACACTAATAGCTCTTACAT 59.722 37.037 0.00 0.00 0.00 2.29
3794 5233 9.764363 TTGGACACTAATAGCTCTTACATTATG 57.236 33.333 0.00 0.00 0.00 1.90
3795 5234 8.924303 TGGACACTAATAGCTCTTACATTATGT 58.076 33.333 2.58 2.58 0.00 2.29
3843 5282 5.751990 CCGGTGTTACCTATATTTCTGTGAC 59.248 44.000 0.00 0.00 35.66 3.67
3849 5288 5.276461 ACCTATATTTCTGTGACGCATCA 57.724 39.130 0.00 0.00 0.00 3.07
3850 5289 5.858381 ACCTATATTTCTGTGACGCATCAT 58.142 37.500 0.00 0.00 37.14 2.45
3851 5290 5.698089 ACCTATATTTCTGTGACGCATCATG 59.302 40.000 0.00 0.00 37.14 3.07
3862 5301 2.860136 GACGCATCATGACGATCTTCAA 59.140 45.455 12.18 0.00 29.21 2.69
3905 5344 6.179756 TGTTCGTGTCCATAGTACCTTAGTA 58.820 40.000 0.00 0.00 0.00 1.82
3940 5379 9.716556 ACTCTTATATTTCTTTACAGAGGGAGA 57.283 33.333 0.00 0.00 32.21 3.71
3955 5394 3.898123 GAGGGAGATTACATCACTAGCCA 59.102 47.826 0.00 0.00 0.00 4.75
3966 5405 3.071874 TCACTAGCCAAATGAACCTGG 57.928 47.619 0.00 0.00 35.67 4.45
3995 5434 2.026542 TGCCCTCTCATATCATGATGGC 60.027 50.000 18.72 18.97 43.20 4.40
4029 5468 4.832266 TGTGAACATTTGACAGGGCTTTAT 59.168 37.500 0.00 0.00 0.00 1.40
4072 5513 7.107542 ACGTCTCTAGATCTTTCAGTCTTAGT 58.892 38.462 0.00 0.00 0.00 2.24
4078 5519 9.529823 TCTAGATCTTTCAGTCTTAGTTAACCA 57.470 33.333 0.00 0.00 0.00 3.67
4355 5811 0.526739 AAACAGGAAACCGCGTTTGC 60.527 50.000 4.92 11.14 42.66 3.68
4381 5837 1.204312 GTTCTTGACGTTGCTCGCC 59.796 57.895 0.00 0.00 44.19 5.54
4401 5857 4.641396 GCCCTCACACACAATATATGCTA 58.359 43.478 0.00 0.00 0.00 3.49
4457 9370 4.754618 ACAACAACTCGATAAGCACAATGA 59.245 37.500 0.00 0.00 0.00 2.57
4468 9381 0.593128 GCACAATGACAAGCCTCGTT 59.407 50.000 0.00 0.00 0.00 3.85
4498 9411 1.206849 CTGCACCTCTTCTCCCTCTTC 59.793 57.143 0.00 0.00 0.00 2.87
4506 9419 0.604780 TTCTCCCTCTTCGTCGTCGT 60.605 55.000 1.33 0.00 38.33 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.159599 ACGACTTTGACGATCCGACTAC 60.160 50.000 0.00 0.00 34.70 2.73
1 2 2.079158 ACGACTTTGACGATCCGACTA 58.921 47.619 0.00 0.00 34.70 2.59
2 3 0.879765 ACGACTTTGACGATCCGACT 59.120 50.000 0.00 0.00 34.70 4.18
3 4 1.135746 AGACGACTTTGACGATCCGAC 60.136 52.381 0.00 0.00 34.70 4.79
4 5 1.129998 GAGACGACTTTGACGATCCGA 59.870 52.381 0.00 0.00 34.70 4.55
5 6 1.536149 GAGACGACTTTGACGATCCG 58.464 55.000 0.00 0.00 34.70 4.18
6 7 1.201647 TGGAGACGACTTTGACGATCC 59.798 52.381 0.00 0.00 39.01 3.36
7 8 2.251893 GTGGAGACGACTTTGACGATC 58.748 52.381 0.00 0.00 34.70 3.69
8 9 1.067776 GGTGGAGACGACTTTGACGAT 60.068 52.381 0.00 0.00 34.70 3.73
9 10 0.313043 GGTGGAGACGACTTTGACGA 59.687 55.000 0.00 0.00 34.70 4.20
10 11 0.031585 TGGTGGAGACGACTTTGACG 59.968 55.000 0.00 0.00 0.00 4.35
11 12 2.234300 TTGGTGGAGACGACTTTGAC 57.766 50.000 0.00 0.00 0.00 3.18
12 13 2.992124 TTTGGTGGAGACGACTTTGA 57.008 45.000 0.00 0.00 0.00 2.69
13 14 2.157668 CGATTTGGTGGAGACGACTTTG 59.842 50.000 0.00 0.00 0.00 2.77
14 15 2.036733 TCGATTTGGTGGAGACGACTTT 59.963 45.455 0.00 0.00 0.00 2.66
15 16 1.616865 TCGATTTGGTGGAGACGACTT 59.383 47.619 0.00 0.00 0.00 3.01
16 17 1.254026 TCGATTTGGTGGAGACGACT 58.746 50.000 0.00 0.00 0.00 4.18
17 18 2.295253 ATCGATTTGGTGGAGACGAC 57.705 50.000 0.00 0.00 32.93 4.34
18 19 3.021695 ACTATCGATTTGGTGGAGACGA 58.978 45.455 1.71 0.00 0.00 4.20
19 20 3.438297 ACTATCGATTTGGTGGAGACG 57.562 47.619 1.71 0.00 0.00 4.18
20 21 6.513180 TGATAACTATCGATTTGGTGGAGAC 58.487 40.000 1.71 0.00 35.48 3.36
21 22 6.724893 TGATAACTATCGATTTGGTGGAGA 57.275 37.500 1.71 0.00 35.48 3.71
22 23 7.382110 AGATGATAACTATCGATTTGGTGGAG 58.618 38.462 1.71 0.00 35.48 3.86
23 24 7.015195 TGAGATGATAACTATCGATTTGGTGGA 59.985 37.037 1.71 0.00 35.48 4.02
24 25 7.154656 TGAGATGATAACTATCGATTTGGTGG 58.845 38.462 1.71 0.00 35.48 4.61
25 26 8.768957 ATGAGATGATAACTATCGATTTGGTG 57.231 34.615 1.71 0.00 35.48 4.17
26 27 7.757173 CGATGAGATGATAACTATCGATTTGGT 59.243 37.037 1.71 0.00 39.60 3.67
27 28 7.970614 TCGATGAGATGATAACTATCGATTTGG 59.029 37.037 1.71 0.00 40.71 3.28
28 29 8.902040 TCGATGAGATGATAACTATCGATTTG 57.098 34.615 1.71 0.00 40.71 2.32
29 30 9.914131 TTTCGATGAGATGATAACTATCGATTT 57.086 29.630 1.71 0.00 43.69 2.17
30 31 9.566530 CTTTCGATGAGATGATAACTATCGATT 57.433 33.333 1.71 0.00 43.69 3.34
31 32 8.951243 TCTTTCGATGAGATGATAACTATCGAT 58.049 33.333 2.16 2.16 43.69 3.59
32 33 8.324163 TCTTTCGATGAGATGATAACTATCGA 57.676 34.615 0.00 0.00 42.92 3.59
33 34 9.220635 GATCTTTCGATGAGATGATAACTATCG 57.779 37.037 14.43 0.00 38.86 2.92
51 52 1.641577 GAAGGTGTCCCGATCTTTCG 58.358 55.000 0.00 0.00 45.08 3.46
52 53 1.641577 CGAAGGTGTCCCGATCTTTC 58.358 55.000 0.00 0.00 35.12 2.62
53 54 0.391263 GCGAAGGTGTCCCGATCTTT 60.391 55.000 0.00 0.00 35.12 2.52
54 55 1.218316 GCGAAGGTGTCCCGATCTT 59.782 57.895 0.00 0.00 35.12 2.40
55 56 2.722201 GGCGAAGGTGTCCCGATCT 61.722 63.158 0.00 0.00 35.12 2.75
56 57 2.202892 GGCGAAGGTGTCCCGATC 60.203 66.667 0.00 0.00 35.12 3.69
57 58 2.683933 AGGCGAAGGTGTCCCGAT 60.684 61.111 0.00 0.00 35.12 4.18
58 59 2.488771 TAGAGGCGAAGGTGTCCCGA 62.489 60.000 0.00 0.00 35.12 5.14
59 60 1.392710 ATAGAGGCGAAGGTGTCCCG 61.393 60.000 0.00 0.00 35.12 5.14
60 61 0.389757 GATAGAGGCGAAGGTGTCCC 59.610 60.000 0.00 0.00 0.00 4.46
61 62 1.112113 TGATAGAGGCGAAGGTGTCC 58.888 55.000 0.00 0.00 0.00 4.02
62 63 2.961526 TTGATAGAGGCGAAGGTGTC 57.038 50.000 0.00 0.00 0.00 3.67
63 64 2.832129 TCTTTGATAGAGGCGAAGGTGT 59.168 45.455 0.00 0.00 0.00 4.16
64 65 3.526931 TCTTTGATAGAGGCGAAGGTG 57.473 47.619 0.00 0.00 0.00 4.00
65 66 3.118592 CCTTCTTTGATAGAGGCGAAGGT 60.119 47.826 0.00 0.00 41.45 3.50
66 67 3.133003 TCCTTCTTTGATAGAGGCGAAGG 59.867 47.826 9.06 9.06 45.46 3.46
67 68 4.392921 TCCTTCTTTGATAGAGGCGAAG 57.607 45.455 0.00 0.00 33.51 3.79
68 69 4.819105 TTCCTTCTTTGATAGAGGCGAA 57.181 40.909 0.00 0.00 33.51 4.70
69 70 4.162320 ACATTCCTTCTTTGATAGAGGCGA 59.838 41.667 0.00 0.00 33.51 5.54
70 71 4.446371 ACATTCCTTCTTTGATAGAGGCG 58.554 43.478 0.00 0.00 33.51 5.52
71 72 7.275920 TCTAACATTCCTTCTTTGATAGAGGC 58.724 38.462 0.00 0.00 33.51 4.70
72 73 8.700051 TCTCTAACATTCCTTCTTTGATAGAGG 58.300 37.037 13.19 0.00 40.48 3.69
73 74 9.528018 GTCTCTAACATTCCTTCTTTGATAGAG 57.472 37.037 9.07 9.07 40.98 2.43
74 75 9.261035 AGTCTCTAACATTCCTTCTTTGATAGA 57.739 33.333 0.00 0.00 0.00 1.98
75 76 9.883142 AAGTCTCTAACATTCCTTCTTTGATAG 57.117 33.333 0.00 0.00 0.00 2.08
77 78 9.579932 AAAAGTCTCTAACATTCCTTCTTTGAT 57.420 29.630 0.00 0.00 0.00 2.57
78 79 8.980481 AAAAGTCTCTAACATTCCTTCTTTGA 57.020 30.769 0.00 0.00 0.00 2.69
164 165 9.636879 CATTACATACAAACAAATTGATGGTGA 57.363 29.630 0.00 0.00 41.85 4.02
165 166 9.636879 TCATTACATACAAACAAATTGATGGTG 57.363 29.630 0.00 5.15 41.85 4.17
245 246 9.688592 CCTTCTTTCAATTCATATGATTAAGGC 57.311 33.333 6.17 0.00 30.43 4.35
246 247 9.688592 GCCTTCTTTCAATTCATATGATTAAGG 57.311 33.333 6.17 11.86 35.52 2.69
250 251 8.755977 ACTTGCCTTCTTTCAATTCATATGATT 58.244 29.630 6.17 0.00 0.00 2.57
251 252 8.302515 ACTTGCCTTCTTTCAATTCATATGAT 57.697 30.769 6.17 0.00 0.00 2.45
252 253 7.707624 ACTTGCCTTCTTTCAATTCATATGA 57.292 32.000 0.00 0.00 0.00 2.15
253 254 9.512435 CTAACTTGCCTTCTTTCAATTCATATG 57.488 33.333 0.00 0.00 0.00 1.78
254 255 8.689972 CCTAACTTGCCTTCTTTCAATTCATAT 58.310 33.333 0.00 0.00 0.00 1.78
255 256 7.122650 CCCTAACTTGCCTTCTTTCAATTCATA 59.877 37.037 0.00 0.00 0.00 2.15
256 257 6.071165 CCCTAACTTGCCTTCTTTCAATTCAT 60.071 38.462 0.00 0.00 0.00 2.57
257 258 5.243730 CCCTAACTTGCCTTCTTTCAATTCA 59.756 40.000 0.00 0.00 0.00 2.57
258 259 5.476945 TCCCTAACTTGCCTTCTTTCAATTC 59.523 40.000 0.00 0.00 0.00 2.17
259 260 5.393866 TCCCTAACTTGCCTTCTTTCAATT 58.606 37.500 0.00 0.00 0.00 2.32
260 261 4.998051 TCCCTAACTTGCCTTCTTTCAAT 58.002 39.130 0.00 0.00 0.00 2.57
261 262 4.447138 TCCCTAACTTGCCTTCTTTCAA 57.553 40.909 0.00 0.00 0.00 2.69
262 263 4.447138 TTCCCTAACTTGCCTTCTTTCA 57.553 40.909 0.00 0.00 0.00 2.69
263 264 5.243954 ACAATTCCCTAACTTGCCTTCTTTC 59.756 40.000 0.00 0.00 0.00 2.62
264 265 5.147767 ACAATTCCCTAACTTGCCTTCTTT 58.852 37.500 0.00 0.00 0.00 2.52
265 266 4.740902 ACAATTCCCTAACTTGCCTTCTT 58.259 39.130 0.00 0.00 0.00 2.52
266 267 4.388577 ACAATTCCCTAACTTGCCTTCT 57.611 40.909 0.00 0.00 0.00 2.85
267 268 5.254115 ACTACAATTCCCTAACTTGCCTTC 58.746 41.667 0.00 0.00 0.00 3.46
268 269 5.256806 ACTACAATTCCCTAACTTGCCTT 57.743 39.130 0.00 0.00 0.00 4.35
269 270 4.929146 ACTACAATTCCCTAACTTGCCT 57.071 40.909 0.00 0.00 0.00 4.75
270 271 5.710567 AGAAACTACAATTCCCTAACTTGCC 59.289 40.000 0.00 0.00 0.00 4.52
271 272 6.127980 GGAGAAACTACAATTCCCTAACTTGC 60.128 42.308 0.00 0.00 0.00 4.01
272 273 6.940298 TGGAGAAACTACAATTCCCTAACTTG 59.060 38.462 0.00 0.00 0.00 3.16
273 274 7.086685 TGGAGAAACTACAATTCCCTAACTT 57.913 36.000 0.00 0.00 0.00 2.66
274 275 6.697641 TGGAGAAACTACAATTCCCTAACT 57.302 37.500 0.00 0.00 0.00 2.24
275 276 7.142306 GTTGGAGAAACTACAATTCCCTAAC 57.858 40.000 0.00 0.00 36.63 2.34
289 290 6.863645 GCATTAAGAAGGAAAGTTGGAGAAAC 59.136 38.462 0.00 0.00 39.24 2.78
290 291 6.015434 GGCATTAAGAAGGAAAGTTGGAGAAA 60.015 38.462 0.00 0.00 0.00 2.52
291 292 5.476945 GGCATTAAGAAGGAAAGTTGGAGAA 59.523 40.000 0.00 0.00 0.00 2.87
292 293 5.010282 GGCATTAAGAAGGAAAGTTGGAGA 58.990 41.667 0.00 0.00 0.00 3.71
293 294 4.766891 TGGCATTAAGAAGGAAAGTTGGAG 59.233 41.667 0.00 0.00 0.00 3.86
294 295 4.735369 TGGCATTAAGAAGGAAAGTTGGA 58.265 39.130 0.00 0.00 0.00 3.53
295 296 5.467035 TTGGCATTAAGAAGGAAAGTTGG 57.533 39.130 0.00 0.00 0.00 3.77
296 297 5.928264 CCTTTGGCATTAAGAAGGAAAGTTG 59.072 40.000 8.89 0.00 40.86 3.16
297 298 5.838521 TCCTTTGGCATTAAGAAGGAAAGTT 59.161 36.000 13.79 0.00 43.35 2.66
298 299 5.393866 TCCTTTGGCATTAAGAAGGAAAGT 58.606 37.500 13.79 0.00 43.35 2.66
299 300 5.982890 TCCTTTGGCATTAAGAAGGAAAG 57.017 39.130 13.79 0.00 43.35 2.62
303 304 4.199310 TCGATCCTTTGGCATTAAGAAGG 58.801 43.478 8.34 8.34 39.97 3.46
304 305 4.878397 ACTCGATCCTTTGGCATTAAGAAG 59.122 41.667 0.48 0.00 0.00 2.85
305 306 4.843728 ACTCGATCCTTTGGCATTAAGAA 58.156 39.130 0.48 0.00 0.00 2.52
306 307 4.487714 ACTCGATCCTTTGGCATTAAGA 57.512 40.909 0.48 0.00 0.00 2.10
307 308 4.035675 GGAACTCGATCCTTTGGCATTAAG 59.964 45.833 0.00 0.00 36.50 1.85
308 309 3.945285 GGAACTCGATCCTTTGGCATTAA 59.055 43.478 0.00 0.00 36.50 1.40
309 310 3.541632 GGAACTCGATCCTTTGGCATTA 58.458 45.455 0.00 0.00 36.50 1.90
310 311 2.369394 GGAACTCGATCCTTTGGCATT 58.631 47.619 0.00 0.00 36.50 3.56
311 312 1.743772 CGGAACTCGATCCTTTGGCAT 60.744 52.381 3.65 0.00 42.43 4.40
312 313 0.391130 CGGAACTCGATCCTTTGGCA 60.391 55.000 3.65 0.00 42.43 4.92
313 314 0.391263 ACGGAACTCGATCCTTTGGC 60.391 55.000 3.65 0.00 42.43 4.52
314 315 2.094390 TGTACGGAACTCGATCCTTTGG 60.094 50.000 3.65 0.00 42.43 3.28
315 316 3.179830 CTGTACGGAACTCGATCCTTTG 58.820 50.000 0.00 0.00 42.43 2.77
316 317 2.824341 ACTGTACGGAACTCGATCCTTT 59.176 45.455 9.17 0.00 42.43 3.11
317 318 2.444421 ACTGTACGGAACTCGATCCTT 58.556 47.619 9.17 0.00 42.43 3.36
318 319 2.125773 ACTGTACGGAACTCGATCCT 57.874 50.000 9.17 0.00 42.43 3.24
319 320 2.032675 GGTACTGTACGGAACTCGATCC 59.967 54.545 9.17 0.00 42.43 3.36
320 321 2.941720 AGGTACTGTACGGAACTCGATC 59.058 50.000 9.17 0.00 38.30 3.69
321 322 2.996631 AGGTACTGTACGGAACTCGAT 58.003 47.619 9.17 0.00 38.30 3.59
322 323 2.479566 AGGTACTGTACGGAACTCGA 57.520 50.000 9.17 0.00 38.30 4.04
338 339 9.589461 ACACTGTATTTATCTACTATAGCAGGT 57.411 33.333 0.00 0.00 0.00 4.00
342 343 9.063739 GCGAACACTGTATTTATCTACTATAGC 57.936 37.037 0.00 0.00 0.00 2.97
346 347 9.112725 TGTAGCGAACACTGTATTTATCTACTA 57.887 33.333 0.00 0.00 31.43 1.82
347 348 7.993101 TGTAGCGAACACTGTATTTATCTACT 58.007 34.615 0.00 0.00 31.43 2.57
348 349 8.624701 TTGTAGCGAACACTGTATTTATCTAC 57.375 34.615 0.00 0.00 38.00 2.59
350 351 9.245962 GTATTGTAGCGAACACTGTATTTATCT 57.754 33.333 0.00 0.00 38.00 1.98
351 352 9.245962 AGTATTGTAGCGAACACTGTATTTATC 57.754 33.333 0.00 0.00 38.00 1.75
352 353 9.245962 GAGTATTGTAGCGAACACTGTATTTAT 57.754 33.333 0.00 0.00 38.00 1.40
353 354 7.430211 CGAGTATTGTAGCGAACACTGTATTTA 59.570 37.037 0.00 0.00 38.00 1.40
354 355 6.252869 CGAGTATTGTAGCGAACACTGTATTT 59.747 38.462 0.00 0.00 38.00 1.40
355 356 5.742453 CGAGTATTGTAGCGAACACTGTATT 59.258 40.000 0.00 0.00 38.00 1.89
356 357 5.163683 ACGAGTATTGTAGCGAACACTGTAT 60.164 40.000 0.00 0.00 38.00 2.29
357 358 4.154737 ACGAGTATTGTAGCGAACACTGTA 59.845 41.667 0.00 0.00 38.00 2.74
358 359 3.057736 ACGAGTATTGTAGCGAACACTGT 60.058 43.478 0.00 0.00 38.00 3.55
359 360 3.300853 CACGAGTATTGTAGCGAACACTG 59.699 47.826 0.00 0.00 38.00 3.66
360 361 3.499048 CACGAGTATTGTAGCGAACACT 58.501 45.455 0.00 0.00 38.00 3.55
361 362 2.597305 CCACGAGTATTGTAGCGAACAC 59.403 50.000 0.00 0.00 38.00 3.32
362 363 2.871133 CCACGAGTATTGTAGCGAACA 58.129 47.619 0.00 0.00 35.88 3.18
363 364 1.587034 GCCACGAGTATTGTAGCGAAC 59.413 52.381 0.00 0.00 24.76 3.95
364 365 1.475280 AGCCACGAGTATTGTAGCGAA 59.525 47.619 0.00 0.00 42.27 4.70
365 366 1.100510 AGCCACGAGTATTGTAGCGA 58.899 50.000 0.00 0.00 42.27 4.93
366 367 1.922570 AAGCCACGAGTATTGTAGCG 58.077 50.000 0.00 0.00 42.27 4.26
367 368 2.608090 GGAAAGCCACGAGTATTGTAGC 59.392 50.000 0.00 0.00 37.39 3.58
368 369 4.124851 AGGAAAGCCACGAGTATTGTAG 57.875 45.455 0.00 0.00 36.29 2.74
369 370 4.222145 AGAAGGAAAGCCACGAGTATTGTA 59.778 41.667 0.00 0.00 36.29 2.41
370 371 3.008049 AGAAGGAAAGCCACGAGTATTGT 59.992 43.478 0.00 0.00 36.29 2.71
371 372 3.600388 AGAAGGAAAGCCACGAGTATTG 58.400 45.455 0.00 0.00 36.29 1.90
372 373 3.515901 AGAGAAGGAAAGCCACGAGTATT 59.484 43.478 0.00 0.00 36.29 1.89
373 374 3.100671 AGAGAAGGAAAGCCACGAGTAT 58.899 45.455 0.00 0.00 36.29 2.12
374 375 2.231478 CAGAGAAGGAAAGCCACGAGTA 59.769 50.000 0.00 0.00 36.29 2.59
375 376 1.001406 CAGAGAAGGAAAGCCACGAGT 59.999 52.381 0.00 0.00 36.29 4.18
376 377 1.001406 ACAGAGAAGGAAAGCCACGAG 59.999 52.381 0.00 0.00 36.29 4.18
377 378 1.048601 ACAGAGAAGGAAAGCCACGA 58.951 50.000 0.00 0.00 36.29 4.35
378 379 1.884235 AACAGAGAAGGAAAGCCACG 58.116 50.000 0.00 0.00 36.29 4.94
379 380 4.578928 TGTAAAACAGAGAAGGAAAGCCAC 59.421 41.667 0.00 0.00 36.29 5.01
380 381 4.578928 GTGTAAAACAGAGAAGGAAAGCCA 59.421 41.667 0.00 0.00 36.29 4.75
381 382 4.822350 AGTGTAAAACAGAGAAGGAAAGCC 59.178 41.667 0.00 0.00 0.00 4.35
382 383 6.929606 TCTAGTGTAAAACAGAGAAGGAAAGC 59.070 38.462 0.00 0.00 0.00 3.51
383 384 9.495572 AATCTAGTGTAAAACAGAGAAGGAAAG 57.504 33.333 0.00 0.00 28.63 2.62
384 385 9.273016 CAATCTAGTGTAAAACAGAGAAGGAAA 57.727 33.333 0.00 0.00 28.63 3.13
385 386 7.387948 GCAATCTAGTGTAAAACAGAGAAGGAA 59.612 37.037 0.00 0.00 28.63 3.36
386 387 6.874134 GCAATCTAGTGTAAAACAGAGAAGGA 59.126 38.462 0.00 0.00 28.63 3.36
387 388 6.650807 TGCAATCTAGTGTAAAACAGAGAAGG 59.349 38.462 0.00 0.00 28.63 3.46
388 389 7.386299 ACTGCAATCTAGTGTAAAACAGAGAAG 59.614 37.037 0.00 0.00 28.63 2.85
389 390 7.171508 CACTGCAATCTAGTGTAAAACAGAGAA 59.828 37.037 0.00 0.00 40.43 2.87
390 391 6.646653 CACTGCAATCTAGTGTAAAACAGAGA 59.353 38.462 0.00 0.00 40.43 3.10
391 392 6.825584 CACTGCAATCTAGTGTAAAACAGAG 58.174 40.000 0.00 0.00 40.43 3.35
392 393 6.785488 CACTGCAATCTAGTGTAAAACAGA 57.215 37.500 0.00 0.00 40.43 3.41
402 403 6.322456 TCATCTAAGCTACACTGCAATCTAGT 59.678 38.462 0.00 0.00 34.99 2.57
403 404 6.640499 GTCATCTAAGCTACACTGCAATCTAG 59.360 42.308 0.00 0.00 34.99 2.43
404 405 6.322456 AGTCATCTAAGCTACACTGCAATCTA 59.678 38.462 0.00 0.00 34.99 1.98
405 406 5.128499 AGTCATCTAAGCTACACTGCAATCT 59.872 40.000 0.00 0.00 34.99 2.40
406 407 5.355596 AGTCATCTAAGCTACACTGCAATC 58.644 41.667 0.00 0.00 34.99 2.67
407 408 5.350504 AGTCATCTAAGCTACACTGCAAT 57.649 39.130 0.00 0.00 34.99 3.56
408 409 4.808414 AGTCATCTAAGCTACACTGCAA 57.192 40.909 0.00 0.00 34.99 4.08
409 410 4.464244 AGAAGTCATCTAAGCTACACTGCA 59.536 41.667 0.00 0.00 36.32 4.41
410 411 5.004922 AGAAGTCATCTAAGCTACACTGC 57.995 43.478 0.00 0.00 36.32 4.40
411 412 6.449635 AGAGAAGTCATCTAAGCTACACTG 57.550 41.667 0.00 0.00 38.96 3.66
412 413 5.592688 GGAGAGAAGTCATCTAAGCTACACT 59.407 44.000 0.00 0.00 38.96 3.55
413 414 5.592688 AGGAGAGAAGTCATCTAAGCTACAC 59.407 44.000 0.00 0.00 38.96 2.90
414 415 5.761205 AGGAGAGAAGTCATCTAAGCTACA 58.239 41.667 0.00 0.00 38.96 2.74
415 416 6.320164 TGAAGGAGAGAAGTCATCTAAGCTAC 59.680 42.308 0.00 0.00 38.96 3.58
416 417 6.427441 TGAAGGAGAGAAGTCATCTAAGCTA 58.573 40.000 0.00 0.00 38.96 3.32
417 418 5.268387 TGAAGGAGAGAAGTCATCTAAGCT 58.732 41.667 0.00 0.00 38.96 3.74
418 419 5.590530 TGAAGGAGAGAAGTCATCTAAGC 57.409 43.478 0.00 0.00 38.96 3.09
419 420 7.111247 ACATGAAGGAGAGAAGTCATCTAAG 57.889 40.000 0.00 0.00 38.96 2.18
420 421 7.487822 AACATGAAGGAGAGAAGTCATCTAA 57.512 36.000 0.00 0.00 38.96 2.10
421 422 8.055790 TCTAACATGAAGGAGAGAAGTCATCTA 58.944 37.037 0.00 0.00 38.96 1.98
422 423 6.894654 TCTAACATGAAGGAGAGAAGTCATCT 59.105 38.462 0.00 0.00 42.61 2.90
423 424 7.106439 TCTAACATGAAGGAGAGAAGTCATC 57.894 40.000 0.00 0.00 0.00 2.92
424 425 6.098124 CCTCTAACATGAAGGAGAGAAGTCAT 59.902 42.308 0.00 0.00 38.14 3.06
425 426 5.420421 CCTCTAACATGAAGGAGAGAAGTCA 59.580 44.000 0.00 0.00 38.14 3.41
426 427 5.654650 TCCTCTAACATGAAGGAGAGAAGTC 59.345 44.000 0.00 0.00 38.14 3.01
427 428 5.584913 TCCTCTAACATGAAGGAGAGAAGT 58.415 41.667 0.00 0.00 38.14 3.01
428 429 6.239289 GGATCCTCTAACATGAAGGAGAGAAG 60.239 46.154 3.84 0.00 38.14 2.85
429 430 5.600484 GGATCCTCTAACATGAAGGAGAGAA 59.400 44.000 3.84 0.00 38.14 2.87
430 431 5.144100 GGATCCTCTAACATGAAGGAGAGA 58.856 45.833 3.84 4.03 38.14 3.10
431 432 4.898265 TGGATCCTCTAACATGAAGGAGAG 59.102 45.833 14.23 5.42 36.08 3.20
432 433 4.651503 GTGGATCCTCTAACATGAAGGAGA 59.348 45.833 14.23 0.00 31.64 3.71
433 434 4.653341 AGTGGATCCTCTAACATGAAGGAG 59.347 45.833 14.73 3.27 31.64 3.69
434 435 4.624913 AGTGGATCCTCTAACATGAAGGA 58.375 43.478 14.73 6.54 0.00 3.36
435 436 5.363939 GAAGTGGATCCTCTAACATGAAGG 58.636 45.833 16.52 0.63 0.00 3.46
436 437 5.363939 GGAAGTGGATCCTCTAACATGAAG 58.636 45.833 16.52 0.00 36.50 3.02
437 438 5.359194 GGAAGTGGATCCTCTAACATGAA 57.641 43.478 16.52 0.00 36.50 2.57
473 474 5.241728 ACGCAATGAGCACATATAGTCTCTA 59.758 40.000 0.00 0.00 46.13 2.43
518 521 7.503521 TGAAGTATCAAAGCAATACAACACA 57.496 32.000 0.00 0.00 33.00 3.72
589 592 7.540745 GCTTATTCTTTTTCGTTATGCAAAGGA 59.459 33.333 0.00 0.00 0.00 3.36
628 631 2.734079 CAAAGAGCGTGGAGAAGAAGAC 59.266 50.000 0.00 0.00 0.00 3.01
629 632 2.868044 GCAAAGAGCGTGGAGAAGAAGA 60.868 50.000 0.00 0.00 0.00 2.87
630 633 1.462670 GCAAAGAGCGTGGAGAAGAAG 59.537 52.381 0.00 0.00 0.00 2.85
642 645 3.066481 GGAAGAAGGATCATGCAAAGAGC 59.934 47.826 0.00 0.00 45.96 4.09
667 670 0.984995 GGGATAATTCGGGAGAGGGG 59.015 60.000 0.00 0.00 41.75 4.79
781 911 3.190953 CCGAGAGAACTAGAAAACGGACT 59.809 47.826 0.00 0.00 41.30 3.85
787 917 4.771590 TTACGCCGAGAGAACTAGAAAA 57.228 40.909 0.00 0.00 0.00 2.29
834 964 1.339151 GGACATCTGGGTCAACTCACC 60.339 57.143 0.00 0.00 39.59 4.02
846 976 1.377725 GGGTGTGCCTGGACATCTG 60.378 63.158 0.00 0.00 34.45 2.90
938 1068 2.434702 CCCGGAGCTTGGTAGATAAAGT 59.565 50.000 0.73 0.00 0.00 2.66
1064 1201 1.148236 GGAGAGAGGGGTACAGGCTAT 59.852 57.143 0.00 0.00 0.00 2.97
1101 1238 1.027357 GGGTAGTGACGGATTAGCGA 58.973 55.000 0.00 0.00 0.00 4.93
1103 1240 1.411041 AGGGGTAGTGACGGATTAGC 58.589 55.000 0.00 0.00 0.00 3.09
1105 1242 3.716431 AGAAAGGGGTAGTGACGGATTA 58.284 45.455 0.00 0.00 0.00 1.75
1114 1257 1.192428 CAGCGGTAGAAAGGGGTAGT 58.808 55.000 0.00 0.00 0.00 2.73
1118 1261 0.108138 CAGTCAGCGGTAGAAAGGGG 60.108 60.000 0.00 0.00 0.00 4.79
1120 1263 2.755929 GCAGTCAGCGGTAGAAAGG 58.244 57.895 0.00 0.00 0.00 3.11
1163 1310 4.080638 TCTGAAACCACCAAAATGGCTTTT 60.081 37.500 0.00 0.00 44.33 2.27
1164 1311 3.454082 TCTGAAACCACCAAAATGGCTTT 59.546 39.130 0.00 0.00 44.33 3.51
1165 1312 3.037549 TCTGAAACCACCAAAATGGCTT 58.962 40.909 0.00 0.00 44.33 4.35
1166 1313 2.676748 TCTGAAACCACCAAAATGGCT 58.323 42.857 0.00 0.00 44.33 4.75
1167 1314 3.244181 ACATCTGAAACCACCAAAATGGC 60.244 43.478 0.00 0.00 44.33 4.40
1168 1315 4.605640 ACATCTGAAACCACCAAAATGG 57.394 40.909 0.00 0.00 46.10 3.16
1169 1316 4.211794 GCAACATCTGAAACCACCAAAATG 59.788 41.667 0.00 0.00 0.00 2.32
1208 1371 1.656652 CCCAGCACAATTACTCGAGG 58.343 55.000 18.41 0.17 0.00 4.63
1224 1387 7.671819 TCAAATACTACAAATTCATCAACCCCA 59.328 33.333 0.00 0.00 0.00 4.96
1303 2226 1.990799 CAATCCAGCAGCACACAATG 58.009 50.000 0.00 0.00 0.00 2.82
1448 2371 2.814805 ATGGCTTGCACTAATGTCCT 57.185 45.000 0.00 0.00 0.00 3.85
1504 2427 2.175878 AAAGTGGACTACTGCTGCAG 57.824 50.000 27.02 27.02 40.26 4.41
1602 2577 9.010029 TGTTCCTTACTCCTTCATTAACAAATC 57.990 33.333 0.00 0.00 0.00 2.17
1852 2827 3.181461 CCTTCTCATCCTCATACACCACC 60.181 52.174 0.00 0.00 0.00 4.61
1993 2968 7.979537 GTGAACTCAATGTATGTACATCCACTA 59.020 37.037 12.68 0.00 45.55 2.74
2277 3272 2.868044 GCTGCTAGGCGTGCACTTATAT 60.868 50.000 16.19 0.00 36.37 0.86
2320 3315 3.495806 GCAATCTTAGGCTCTAGCATGGT 60.496 47.826 1.62 1.62 44.36 3.55
2370 3365 4.876125 ACATCGTCATAGCCAGTGATTAG 58.124 43.478 0.00 0.00 0.00 1.73
2377 3372 5.440234 AGTAGTAACATCGTCATAGCCAG 57.560 43.478 0.00 0.00 0.00 4.85
2441 3436 5.371115 AACTGTATTGTGAATTCCAACCG 57.629 39.130 2.27 0.00 0.00 4.44
2459 3454 3.008049 AGGTAACCACTGAGGCTTAACTG 59.992 47.826 0.00 0.00 43.14 3.16
2621 3618 1.840181 CGTACATGCTGCGTGTCTAT 58.160 50.000 28.98 9.19 35.12 1.98
2629 3626 2.549633 AAATTCTGCGTACATGCTGC 57.450 45.000 0.00 0.00 34.22 5.25
2640 3637 7.039784 TGGTATGCCCTTATCATAAAATTCTGC 60.040 37.037 0.00 0.00 0.00 4.26
2658 3655 4.634004 GGGCAACTAAATTTTTGGTATGCC 59.366 41.667 22.41 22.41 44.60 4.40
2721 3718 7.242914 ACTAGAAATTTACCGCTATTTTCCG 57.757 36.000 0.00 0.00 0.00 4.30
3262 4259 4.323792 CCATCTTCAAGTCCTTCCTGCTTA 60.324 45.833 0.00 0.00 0.00 3.09
3388 4385 6.668645 ACAAGTGGGCACAATAATAGGATTA 58.331 36.000 0.00 0.00 0.00 1.75
3389 4386 5.518865 ACAAGTGGGCACAATAATAGGATT 58.481 37.500 0.00 0.00 0.00 3.01
3390 4387 5.129368 ACAAGTGGGCACAATAATAGGAT 57.871 39.130 0.00 0.00 0.00 3.24
3391 4388 4.523083 GACAAGTGGGCACAATAATAGGA 58.477 43.478 0.00 0.00 0.00 2.94
3392 4389 3.632145 GGACAAGTGGGCACAATAATAGG 59.368 47.826 0.00 0.00 0.00 2.57
3393 4390 4.269183 TGGACAAGTGGGCACAATAATAG 58.731 43.478 0.00 0.00 0.00 1.73
3394 4391 4.308526 TGGACAAGTGGGCACAATAATA 57.691 40.909 0.00 0.00 0.00 0.98
3395 4392 3.168035 TGGACAAGTGGGCACAATAAT 57.832 42.857 0.00 0.00 0.00 1.28
3398 4395 1.203038 TGATGGACAAGTGGGCACAAT 60.203 47.619 0.00 0.00 0.00 2.71
3748 4746 6.001460 TCCAAAACGCTCTTATATTATGGGG 58.999 40.000 0.00 0.00 0.00 4.96
3765 4869 7.900782 TGTAAGAGCTATTAGTGTCCAAAAC 57.099 36.000 0.00 0.00 0.00 2.43
3778 5217 8.099537 CCTTCCATCACATAATGTAAGAGCTAT 58.900 37.037 0.00 0.00 0.00 2.97
3779 5218 7.290014 TCCTTCCATCACATAATGTAAGAGCTA 59.710 37.037 0.00 0.00 0.00 3.32
3780 5219 6.100279 TCCTTCCATCACATAATGTAAGAGCT 59.900 38.462 0.00 0.00 0.00 4.09
3781 5220 6.291377 TCCTTCCATCACATAATGTAAGAGC 58.709 40.000 0.00 0.00 0.00 4.09
3784 5223 8.424918 ACTACTCCTTCCATCACATAATGTAAG 58.575 37.037 0.00 0.00 0.00 2.34
3785 5224 8.319057 ACTACTCCTTCCATCACATAATGTAA 57.681 34.615 0.00 0.00 0.00 2.41
3788 5227 7.440556 CAGAACTACTCCTTCCATCACATAATG 59.559 40.741 0.00 0.00 0.00 1.90
3789 5228 7.419518 CCAGAACTACTCCTTCCATCACATAAT 60.420 40.741 0.00 0.00 0.00 1.28
3790 5229 6.127054 CCAGAACTACTCCTTCCATCACATAA 60.127 42.308 0.00 0.00 0.00 1.90
3793 5232 3.515502 CCAGAACTACTCCTTCCATCACA 59.484 47.826 0.00 0.00 0.00 3.58
3794 5233 3.515901 ACCAGAACTACTCCTTCCATCAC 59.484 47.826 0.00 0.00 0.00 3.06
3795 5234 3.791320 ACCAGAACTACTCCTTCCATCA 58.209 45.455 0.00 0.00 0.00 3.07
3843 5282 2.862536 ACTTGAAGATCGTCATGATGCG 59.137 45.455 24.44 4.68 37.47 4.73
3849 5288 3.599730 TGCAGACTTGAAGATCGTCAT 57.400 42.857 12.25 0.00 0.00 3.06
3850 5289 3.256558 CATGCAGACTTGAAGATCGTCA 58.743 45.455 7.29 7.29 0.00 4.35
3851 5290 2.030213 GCATGCAGACTTGAAGATCGTC 59.970 50.000 14.21 1.20 0.00 4.20
3862 5301 2.290768 ACAAGGATCAAGCATGCAGACT 60.291 45.455 21.98 8.75 0.00 3.24
3914 5353 9.716556 TCTCCCTCTGTAAAGAAATATAAGAGT 57.283 33.333 0.00 0.00 0.00 3.24
3940 5379 6.319658 CAGGTTCATTTGGCTAGTGATGTAAT 59.680 38.462 0.00 0.00 0.00 1.89
3941 5380 5.647658 CAGGTTCATTTGGCTAGTGATGTAA 59.352 40.000 0.00 0.00 0.00 2.41
3966 5405 0.613260 TATGAGAGGGCACACACCAC 59.387 55.000 0.00 0.00 0.00 4.16
3995 5434 2.425143 ATGTTCACACCATAGGCAGG 57.575 50.000 0.00 0.00 0.00 4.85
4029 5468 1.886222 CGTCTGCCCAAAAAGGATCCA 60.886 52.381 15.82 0.00 41.22 3.41
4072 5513 9.559732 CATCAGATATTGTAATCAGGTGGTTAA 57.440 33.333 0.00 0.00 0.00 2.01
4355 5811 2.845764 GCAACGTCAAGAACAACTGTCG 60.846 50.000 0.00 0.00 0.00 4.35
4381 5837 5.928839 GGAGTAGCATATATTGTGTGTGAGG 59.071 44.000 0.00 0.00 0.00 3.86
4457 9370 1.598130 GAGTGGCAACGAGGCTTGT 60.598 57.895 0.18 0.18 44.55 3.16
4468 9381 2.527624 AGGTGCAGGAGAGTGGCA 60.528 61.111 0.00 0.00 34.70 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.