Multiple sequence alignment - TraesCS4D01G177500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G177500 chr4D 100.000 3472 0 0 1 3472 308819961 308823432 0.000000e+00 6412.0
1 TraesCS4D01G177500 chr4D 96.825 63 2 0 3148 3210 308823047 308823109 4.740000e-19 106.0
2 TraesCS4D01G177500 chr4D 96.825 63 2 0 3087 3149 308823108 308823170 4.740000e-19 106.0
3 TraesCS4D01G177500 chr4D 87.356 87 3 4 2453 2534 308822328 308822411 3.690000e-15 93.5
4 TraesCS4D01G177500 chr4D 87.356 87 3 4 2368 2451 308822413 308822494 3.690000e-15 93.5
5 TraesCS4D01G177500 chr4B 93.916 2449 75 27 1 2392 385622964 385625395 0.000000e+00 3629.0
6 TraesCS4D01G177500 chr4B 84.199 443 21 26 2463 2864 385625408 385625842 5.440000e-103 385.0
7 TraesCS4D01G177500 chr4B 94.538 238 10 2 3236 3472 385645310 385645545 7.080000e-97 364.0
8 TraesCS4D01G177500 chr4B 89.189 74 6 2 3077 3149 385643540 385643612 1.330000e-14 91.6
9 TraesCS4D01G177500 chr4B 92.593 54 3 1 3152 3204 385643554 385643607 3.720000e-10 76.8
10 TraesCS4D01G177500 chr4A 93.550 2403 115 20 14 2392 166884114 166881728 0.000000e+00 3542.0
11 TraesCS4D01G177500 chr4A 88.028 426 25 13 2462 2867 166881716 166881297 6.740000e-132 481.0
12 TraesCS4D01G177500 chr4A 81.707 164 18 5 2941 3096 646622879 646623038 3.640000e-25 126.0
13 TraesCS4D01G177500 chrUn 82.209 163 17 5 2942 3096 105399716 105399874 2.810000e-26 130.0
14 TraesCS4D01G177500 chrUn 83.178 107 11 7 517 621 261901588 261901689 1.330000e-14 91.6
15 TraesCS4D01G177500 chr2B 82.209 163 17 5 2942 3096 147299962 147300120 2.810000e-26 130.0
16 TraesCS4D01G177500 chr5A 81.818 165 18 5 2942 3098 585005021 585005181 1.010000e-25 128.0
17 TraesCS4D01G177500 chr1A 77.729 229 35 16 445 667 52453061 52452843 3.640000e-25 126.0
18 TraesCS4D01G177500 chr1A 80.982 163 19 6 2942 3096 82712736 82712578 6.090000e-23 119.0
19 TraesCS4D01G177500 chr3B 79.755 163 21 6 2942 3096 811133933 811133775 1.320000e-19 108.0
20 TraesCS4D01G177500 chr3B 78.808 151 23 9 519 666 793671753 793671609 3.690000e-15 93.5
21 TraesCS4D01G177500 chr3B 83.178 107 11 7 517 621 792447631 792447732 1.330000e-14 91.6
22 TraesCS4D01G177500 chr3B 87.500 80 7 3 543 621 792501130 792501207 4.770000e-14 89.8
23 TraesCS4D01G177500 chr3B 80.734 109 17 4 559 666 793502842 793502737 7.990000e-12 82.4
24 TraesCS4D01G177500 chr6D 79.755 163 18 7 2942 3096 306036885 306037040 1.700000e-18 104.0
25 TraesCS4D01G177500 chr6D 83.505 97 13 2 2939 3035 10459465 10459558 1.720000e-13 87.9
26 TraesCS4D01G177500 chr1B 85.417 96 11 2 2939 3034 602236096 602236188 2.850000e-16 97.1
27 TraesCS4D01G177500 chr1B 83.333 90 9 5 554 640 83968143 83968057 1.030000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G177500 chr4D 308819961 308823432 3471 False 1362.2 6412 93.6724 1 3472 5 chr4D.!!$F1 3471
1 TraesCS4D01G177500 chr4B 385622964 385625842 2878 False 2007.0 3629 89.0575 1 2864 2 chr4B.!!$F1 2863
2 TraesCS4D01G177500 chr4A 166881297 166884114 2817 True 2011.5 3542 90.7890 14 2867 2 chr4A.!!$R1 2853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 706 1.387119 AAGGGAAGGGAAGGAAGCAT 58.613 50.0 0.0 0.0 0.0 3.79 F
1019 1045 0.235665 CTGCAACACTACAGCCAACG 59.764 55.0 0.0 0.0 0.0 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2421 2484 0.249953 TTCAAACTAAGGGACGCGCA 60.250 50.0 5.73 0.0 0.0 6.09 R
2493 2556 0.463116 AAGGGACGAACACACACCAC 60.463 55.0 0.00 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 5.560722 TTTGAAGGTGTGATTGAGTCCTA 57.439 39.130 0.00 0.00 0.00 2.94
268 289 7.500807 AAAAGTTTTTCACATACACGTTGAC 57.499 32.000 0.00 0.00 0.00 3.18
683 706 1.387119 AAGGGAAGGGAAGGAAGCAT 58.613 50.000 0.00 0.00 0.00 3.79
973 999 4.547532 CGAGGAGTATATACACACTTGCC 58.452 47.826 15.18 4.79 0.00 4.52
1019 1045 0.235665 CTGCAACACTACAGCCAACG 59.764 55.000 0.00 0.00 0.00 4.10
1384 1410 3.114616 CACCGCCGCAGACAAGAG 61.115 66.667 0.00 0.00 0.00 2.85
1426 1452 1.600916 GGAACAAGCTGGGCGAGTT 60.601 57.895 0.00 0.00 34.40 3.01
1459 1485 1.519719 CCGAGAAGGCCAAGGAGAG 59.480 63.158 5.01 0.00 0.00 3.20
1745 1771 0.464036 AGGACGTGACACAGCAGAAA 59.536 50.000 6.37 0.00 0.00 2.52
1760 1786 2.667199 AAAGCCGGCGTGTACACC 60.667 61.111 23.20 12.43 0.00 4.16
1833 1892 1.884464 CAGACCCACGATGCCGATG 60.884 63.158 0.00 0.00 39.50 3.84
2383 2446 5.007724 CAGTAGAGCCTTCGTTTTCAAGTTT 59.992 40.000 0.00 0.00 0.00 2.66
2388 2451 5.720202 AGCCTTCGTTTTCAAGTTTCTTTT 58.280 33.333 0.00 0.00 0.00 2.27
2389 2452 6.859017 AGCCTTCGTTTTCAAGTTTCTTTTA 58.141 32.000 0.00 0.00 0.00 1.52
2390 2453 6.750501 AGCCTTCGTTTTCAAGTTTCTTTTAC 59.249 34.615 0.00 0.00 0.00 2.01
2391 2454 6.750501 GCCTTCGTTTTCAAGTTTCTTTTACT 59.249 34.615 0.00 0.00 0.00 2.24
2392 2455 7.911727 GCCTTCGTTTTCAAGTTTCTTTTACTA 59.088 33.333 0.00 0.00 0.00 1.82
2393 2456 9.218359 CCTTCGTTTTCAAGTTTCTTTTACTAC 57.782 33.333 0.00 0.00 0.00 2.73
2394 2457 9.218359 CTTCGTTTTCAAGTTTCTTTTACTACC 57.782 33.333 0.00 0.00 0.00 3.18
2395 2458 8.266392 TCGTTTTCAAGTTTCTTTTACTACCA 57.734 30.769 0.00 0.00 0.00 3.25
2396 2459 8.177013 TCGTTTTCAAGTTTCTTTTACTACCAC 58.823 33.333 0.00 0.00 0.00 4.16
2397 2460 7.430211 CGTTTTCAAGTTTCTTTTACTACCACC 59.570 37.037 0.00 0.00 0.00 4.61
2398 2461 8.464404 GTTTTCAAGTTTCTTTTACTACCACCT 58.536 33.333 0.00 0.00 0.00 4.00
2399 2462 8.584063 TTTCAAGTTTCTTTTACTACCACCTT 57.416 30.769 0.00 0.00 0.00 3.50
2400 2463 8.584063 TTCAAGTTTCTTTTACTACCACCTTT 57.416 30.769 0.00 0.00 0.00 3.11
2401 2464 8.584063 TCAAGTTTCTTTTACTACCACCTTTT 57.416 30.769 0.00 0.00 0.00 2.27
2402 2465 8.463607 TCAAGTTTCTTTTACTACCACCTTTTG 58.536 33.333 0.00 0.00 0.00 2.44
2403 2466 7.949690 AGTTTCTTTTACTACCACCTTTTGT 57.050 32.000 0.00 0.00 0.00 2.83
2404 2467 7.993101 AGTTTCTTTTACTACCACCTTTTGTC 58.007 34.615 0.00 0.00 0.00 3.18
2405 2468 7.832685 AGTTTCTTTTACTACCACCTTTTGTCT 59.167 33.333 0.00 0.00 0.00 3.41
2406 2469 9.112725 GTTTCTTTTACTACCACCTTTTGTCTA 57.887 33.333 0.00 0.00 0.00 2.59
2407 2470 9.683870 TTTCTTTTACTACCACCTTTTGTCTAA 57.316 29.630 0.00 0.00 0.00 2.10
2408 2471 8.897872 TCTTTTACTACCACCTTTTGTCTAAG 57.102 34.615 0.00 0.00 0.00 2.18
2409 2472 8.488668 TCTTTTACTACCACCTTTTGTCTAAGT 58.511 33.333 0.00 0.00 0.00 2.24
2410 2473 9.768662 CTTTTACTACCACCTTTTGTCTAAGTA 57.231 33.333 0.00 0.00 0.00 2.24
2411 2474 9.768662 TTTTACTACCACCTTTTGTCTAAGTAG 57.231 33.333 0.00 0.00 33.75 2.57
2412 2475 6.990908 ACTACCACCTTTTGTCTAAGTAGT 57.009 37.500 0.00 0.00 35.54 2.73
2413 2476 6.756221 ACTACCACCTTTTGTCTAAGTAGTG 58.244 40.000 0.00 0.00 38.14 2.74
2414 2477 5.625568 ACCACCTTTTGTCTAAGTAGTGT 57.374 39.130 0.00 0.00 0.00 3.55
2415 2478 6.736110 ACCACCTTTTGTCTAAGTAGTGTA 57.264 37.500 0.00 0.00 0.00 2.90
2416 2479 6.756221 ACCACCTTTTGTCTAAGTAGTGTAG 58.244 40.000 0.00 0.00 0.00 2.74
2417 2480 6.325804 ACCACCTTTTGTCTAAGTAGTGTAGT 59.674 38.462 0.00 0.00 0.00 2.73
2418 2481 6.645415 CCACCTTTTGTCTAAGTAGTGTAGTG 59.355 42.308 0.00 0.00 0.00 2.74
2419 2482 7.208080 CACCTTTTGTCTAAGTAGTGTAGTGT 58.792 38.462 0.00 0.00 0.00 3.55
2420 2483 7.169308 CACCTTTTGTCTAAGTAGTGTAGTGTG 59.831 40.741 0.00 0.00 0.00 3.82
2421 2484 7.147776 ACCTTTTGTCTAAGTAGTGTAGTGTGT 60.148 37.037 0.00 0.00 0.00 3.72
2422 2485 7.169308 CCTTTTGTCTAAGTAGTGTAGTGTGTG 59.831 40.741 0.00 0.00 0.00 3.82
2423 2486 5.117355 TGTCTAAGTAGTGTAGTGTGTGC 57.883 43.478 0.00 0.00 0.00 4.57
2424 2487 4.156915 GTCTAAGTAGTGTAGTGTGTGCG 58.843 47.826 0.00 0.00 0.00 5.34
2425 2488 1.779569 AAGTAGTGTAGTGTGTGCGC 58.220 50.000 0.00 0.00 0.00 6.09
2426 2489 0.386858 AGTAGTGTAGTGTGTGCGCG 60.387 55.000 0.00 0.00 0.00 6.86
2427 2490 0.662374 GTAGTGTAGTGTGTGCGCGT 60.662 55.000 8.43 0.00 0.00 6.01
2428 2491 0.386352 TAGTGTAGTGTGTGCGCGTC 60.386 55.000 8.43 0.00 0.00 5.19
2429 2492 2.355363 TGTAGTGTGTGCGCGTCC 60.355 61.111 8.43 0.00 0.00 4.79
2430 2493 3.110178 GTAGTGTGTGCGCGTCCC 61.110 66.667 8.43 0.00 0.00 4.46
2431 2494 3.299977 TAGTGTGTGCGCGTCCCT 61.300 61.111 8.43 0.00 0.00 4.20
2432 2495 2.863346 TAGTGTGTGCGCGTCCCTT 61.863 57.895 8.43 0.00 0.00 3.95
2433 2496 1.525718 TAGTGTGTGCGCGTCCCTTA 61.526 55.000 8.43 0.00 0.00 2.69
2434 2497 2.048597 TGTGTGCGCGTCCCTTAG 60.049 61.111 8.43 0.00 0.00 2.18
2435 2498 2.048503 GTGTGCGCGTCCCTTAGT 60.049 61.111 8.43 0.00 0.00 2.24
2436 2499 1.666872 GTGTGCGCGTCCCTTAGTT 60.667 57.895 8.43 0.00 0.00 2.24
2437 2500 1.070105 TGTGCGCGTCCCTTAGTTT 59.930 52.632 8.43 0.00 0.00 2.66
2438 2501 1.225376 TGTGCGCGTCCCTTAGTTTG 61.225 55.000 8.43 0.00 0.00 2.93
2439 2502 0.947180 GTGCGCGTCCCTTAGTTTGA 60.947 55.000 8.43 0.00 0.00 2.69
2440 2503 0.249953 TGCGCGTCCCTTAGTTTGAA 60.250 50.000 8.43 0.00 0.00 2.69
2441 2504 1.084289 GCGCGTCCCTTAGTTTGAAT 58.916 50.000 8.43 0.00 0.00 2.57
2442 2505 1.062148 GCGCGTCCCTTAGTTTGAATC 59.938 52.381 8.43 0.00 0.00 2.52
2443 2506 1.664151 CGCGTCCCTTAGTTTGAATCC 59.336 52.381 0.00 0.00 0.00 3.01
2444 2507 2.706890 GCGTCCCTTAGTTTGAATCCA 58.293 47.619 0.00 0.00 0.00 3.41
2446 2509 4.448210 GCGTCCCTTAGTTTGAATCCATA 58.552 43.478 0.00 0.00 0.00 2.74
2448 2511 5.355910 GCGTCCCTTAGTTTGAATCCATAAA 59.644 40.000 0.00 0.00 0.00 1.40
2450 2513 7.417612 CGTCCCTTAGTTTGAATCCATAAATG 58.582 38.462 0.00 0.00 0.00 2.32
2452 2515 8.406297 GTCCCTTAGTTTGAATCCATAAATGTC 58.594 37.037 0.00 0.00 0.00 3.06
2459 2522 5.110814 TGAATCCATAAATGTCCTTCGGT 57.889 39.130 0.00 0.00 0.00 4.69
2460 2523 5.505780 TGAATCCATAAATGTCCTTCGGTT 58.494 37.500 0.00 0.00 0.00 4.44
2468 2531 5.592104 AAATGTCCTTCGGTTTCAAGTTT 57.408 34.783 0.00 0.00 0.00 2.66
2479 2542 7.250445 TCGGTTTCAAGTTTCTTTTACTACC 57.750 36.000 0.00 0.00 0.00 3.18
2480 2543 6.822676 TCGGTTTCAAGTTTCTTTTACTACCA 59.177 34.615 0.00 0.00 0.00 3.25
2486 2549 8.584063 TCAAGTTTCTTTTACTACCACCTTTT 57.416 30.769 0.00 0.00 0.00 2.27
2487 2550 8.463607 TCAAGTTTCTTTTACTACCACCTTTTG 58.536 33.333 0.00 0.00 0.00 2.44
2488 2551 7.949690 AGTTTCTTTTACTACCACCTTTTGT 57.050 32.000 0.00 0.00 0.00 2.83
2490 2553 7.832685 AGTTTCTTTTACTACCACCTTTTGTCT 59.167 33.333 0.00 0.00 0.00 3.41
2492 2555 9.683870 TTTCTTTTACTACCACCTTTTGTCTAA 57.316 29.630 0.00 0.00 0.00 2.10
2493 2556 8.897872 TCTTTTACTACCACCTTTTGTCTAAG 57.102 34.615 0.00 0.00 0.00 2.18
2494 2557 8.488668 TCTTTTACTACCACCTTTTGTCTAAGT 58.511 33.333 0.00 0.00 0.00 2.24
2495 2558 8.441312 TTTTACTACCACCTTTTGTCTAAGTG 57.559 34.615 0.00 0.00 0.00 3.16
2496 2559 4.969484 ACTACCACCTTTTGTCTAAGTGG 58.031 43.478 5.96 5.96 34.89 4.00
2497 2560 3.945640 ACCACCTTTTGTCTAAGTGGT 57.054 42.857 7.29 7.29 36.05 4.16
2504 2567 4.398044 CCTTTTGTCTAAGTGGTGTGTGTT 59.602 41.667 0.00 0.00 0.00 3.32
2526 2589 3.007635 CGTCCCTTAGTTTGGTGAATCC 58.992 50.000 0.00 0.00 0.00 3.01
2572 2635 3.288964 AGAATCTCCGGTGTCTTCGTAT 58.711 45.455 0.00 0.00 0.00 3.06
2573 2636 4.458397 AGAATCTCCGGTGTCTTCGTATA 58.542 43.478 0.00 0.00 0.00 1.47
2574 2637 4.275443 AGAATCTCCGGTGTCTTCGTATAC 59.725 45.833 0.00 0.00 0.00 1.47
2616 2683 3.295273 TCTGCGTGAGTCTGGCGT 61.295 61.111 0.00 0.00 0.00 5.68
2685 2797 3.607661 TGCACCGAGGCGTACACA 61.608 61.111 0.00 0.00 36.28 3.72
2686 2798 2.125673 GCACCGAGGCGTACACAT 60.126 61.111 0.00 0.00 0.00 3.21
2687 2799 2.165301 GCACCGAGGCGTACACATC 61.165 63.158 0.00 0.00 0.00 3.06
2689 2801 1.980232 ACCGAGGCGTACACATCCA 60.980 57.895 0.00 0.00 0.00 3.41
2690 2802 1.327690 ACCGAGGCGTACACATCCAT 61.328 55.000 0.00 0.00 0.00 3.41
2691 2803 0.671796 CCGAGGCGTACACATCCATA 59.328 55.000 0.00 0.00 0.00 2.74
2692 2804 1.272490 CCGAGGCGTACACATCCATAT 59.728 52.381 0.00 0.00 0.00 1.78
2834 2955 2.939103 CCAGAGAATTCATCGACCCAAC 59.061 50.000 8.44 0.00 0.00 3.77
2865 2986 8.613060 AAGACATCATGATCATAAGCGTATTT 57.387 30.769 8.15 0.40 0.00 1.40
2866 2987 9.710900 AAGACATCATGATCATAAGCGTATTTA 57.289 29.630 8.15 0.00 0.00 1.40
2867 2988 9.710900 AGACATCATGATCATAAGCGTATTTAA 57.289 29.630 8.15 0.00 0.00 1.52
2870 2991 9.546909 CATCATGATCATAAGCGTATTTAAACC 57.453 33.333 8.15 0.00 0.00 3.27
2871 2992 8.669946 TCATGATCATAAGCGTATTTAAACCA 57.330 30.769 8.15 0.00 0.00 3.67
2872 2993 8.773645 TCATGATCATAAGCGTATTTAAACCAG 58.226 33.333 8.15 0.00 0.00 4.00
2873 2994 7.490962 TGATCATAAGCGTATTTAAACCAGG 57.509 36.000 0.00 0.00 0.00 4.45
2874 2995 7.276658 TGATCATAAGCGTATTTAAACCAGGA 58.723 34.615 0.00 0.00 0.00 3.86
2875 2996 7.771361 TGATCATAAGCGTATTTAAACCAGGAA 59.229 33.333 0.00 0.00 0.00 3.36
2876 2997 7.925043 TCATAAGCGTATTTAAACCAGGAAA 57.075 32.000 0.00 0.00 0.00 3.13
2877 2998 7.981142 TCATAAGCGTATTTAAACCAGGAAAG 58.019 34.615 0.00 0.00 0.00 2.62
2878 2999 7.608761 TCATAAGCGTATTTAAACCAGGAAAGT 59.391 33.333 0.00 0.00 0.00 2.66
2879 3000 8.885722 CATAAGCGTATTTAAACCAGGAAAGTA 58.114 33.333 0.00 0.00 0.00 2.24
2880 3001 6.980051 AGCGTATTTAAACCAGGAAAGTAG 57.020 37.500 0.00 0.00 0.00 2.57
2881 3002 6.470278 AGCGTATTTAAACCAGGAAAGTAGT 58.530 36.000 0.00 0.00 0.00 2.73
2882 3003 6.592994 AGCGTATTTAAACCAGGAAAGTAGTC 59.407 38.462 0.00 0.00 0.00 2.59
2883 3004 6.592994 GCGTATTTAAACCAGGAAAGTAGTCT 59.407 38.462 0.00 0.00 0.00 3.24
2884 3005 7.118825 GCGTATTTAAACCAGGAAAGTAGTCTT 59.881 37.037 0.00 0.00 35.14 3.01
2885 3006 9.643693 CGTATTTAAACCAGGAAAGTAGTCTTA 57.356 33.333 0.00 0.00 33.09 2.10
2888 3009 9.856162 ATTTAAACCAGGAAAGTAGTCTTAACA 57.144 29.630 0.00 0.00 33.09 2.41
2889 3010 8.897872 TTAAACCAGGAAAGTAGTCTTAACAG 57.102 34.615 0.00 0.00 33.09 3.16
2890 3011 6.742559 AACCAGGAAAGTAGTCTTAACAGA 57.257 37.500 0.00 0.00 33.09 3.41
2891 3012 6.742559 ACCAGGAAAGTAGTCTTAACAGAA 57.257 37.500 0.00 0.00 33.09 3.02
2892 3013 7.317722 ACCAGGAAAGTAGTCTTAACAGAAT 57.682 36.000 0.00 0.00 33.09 2.40
2893 3014 8.431910 ACCAGGAAAGTAGTCTTAACAGAATA 57.568 34.615 0.00 0.00 33.09 1.75
2894 3015 8.877195 ACCAGGAAAGTAGTCTTAACAGAATAA 58.123 33.333 0.00 0.00 31.46 1.40
2895 3016 9.720769 CCAGGAAAGTAGTCTTAACAGAATAAA 57.279 33.333 0.00 0.00 31.46 1.40
2901 3022 8.530269 AGTAGTCTTAACAGAATAAAACCACG 57.470 34.615 0.00 0.00 31.46 4.94
2902 3023 8.146412 AGTAGTCTTAACAGAATAAAACCACGT 58.854 33.333 0.00 0.00 31.46 4.49
2903 3024 7.797038 AGTCTTAACAGAATAAAACCACGTT 57.203 32.000 0.00 0.00 0.00 3.99
2904 3025 8.217131 AGTCTTAACAGAATAAAACCACGTTT 57.783 30.769 0.00 0.00 37.34 3.60
2905 3026 8.126700 AGTCTTAACAGAATAAAACCACGTTTG 58.873 33.333 0.00 0.00 35.80 2.93
2909 3030 5.131784 ACAGAATAAAACCACGTTTGGGTA 58.868 37.500 0.00 0.00 44.90 3.69
2910 3031 5.008911 ACAGAATAAAACCACGTTTGGGTAC 59.991 40.000 0.00 0.00 44.90 3.34
2911 3032 5.239963 CAGAATAAAACCACGTTTGGGTACT 59.760 40.000 0.00 0.00 44.90 2.73
2912 3033 5.471116 AGAATAAAACCACGTTTGGGTACTC 59.529 40.000 0.00 0.00 44.90 2.59
2913 3034 1.971481 AAACCACGTTTGGGTACTCC 58.029 50.000 0.00 0.00 44.90 3.85
2914 3035 0.838608 AACCACGTTTGGGTACTCCA 59.161 50.000 0.00 0.00 43.20 3.86
2915 3036 2.356947 AAACCACGTTTGGGTACTCCAA 60.357 45.455 10.67 10.67 44.90 3.53
2954 3075 7.931578 TGAAAAACTTAGAAAGAAGTCCACA 57.068 32.000 0.00 0.00 38.75 4.17
2955 3076 8.519799 TGAAAAACTTAGAAAGAAGTCCACAT 57.480 30.769 0.00 0.00 38.75 3.21
2956 3077 9.621629 TGAAAAACTTAGAAAGAAGTCCACATA 57.378 29.630 0.00 0.00 38.75 2.29
2959 3080 7.981102 AACTTAGAAAGAAGTCCACATAACC 57.019 36.000 0.00 0.00 38.75 2.85
2960 3081 6.473758 ACTTAGAAAGAAGTCCACATAACCC 58.526 40.000 0.00 0.00 34.48 4.11
2961 3082 4.302559 AGAAAGAAGTCCACATAACCCC 57.697 45.455 0.00 0.00 0.00 4.95
2962 3083 3.010250 AGAAAGAAGTCCACATAACCCCC 59.990 47.826 0.00 0.00 0.00 5.40
2978 3099 1.707106 CCCCCGGGTTTTTACAAACT 58.293 50.000 21.85 0.00 41.92 2.66
2979 3100 1.341852 CCCCCGGGTTTTTACAAACTG 59.658 52.381 21.85 0.00 41.92 3.16
2980 3101 1.341852 CCCCGGGTTTTTACAAACTGG 59.658 52.381 21.85 6.83 41.92 4.00
2981 3102 2.033372 CCCGGGTTTTTACAAACTGGT 58.967 47.619 14.18 0.00 41.92 4.00
2982 3103 2.034939 CCCGGGTTTTTACAAACTGGTC 59.965 50.000 14.18 0.00 41.92 4.02
2983 3104 2.688958 CCGGGTTTTTACAAACTGGTCA 59.311 45.455 4.59 0.00 41.92 4.02
2984 3105 3.489568 CCGGGTTTTTACAAACTGGTCAC 60.490 47.826 4.59 0.00 41.92 3.67
2985 3106 3.379057 CGGGTTTTTACAAACTGGTCACT 59.621 43.478 4.59 0.00 41.92 3.41
2986 3107 4.142337 CGGGTTTTTACAAACTGGTCACTT 60.142 41.667 4.59 0.00 41.92 3.16
2987 3108 5.622687 CGGGTTTTTACAAACTGGTCACTTT 60.623 40.000 4.59 0.00 41.92 2.66
2988 3109 6.404513 CGGGTTTTTACAAACTGGTCACTTTA 60.405 38.462 4.59 0.00 41.92 1.85
2989 3110 6.753279 GGGTTTTTACAAACTGGTCACTTTAC 59.247 38.462 4.59 0.00 41.92 2.01
2990 3111 7.363181 GGGTTTTTACAAACTGGTCACTTTACT 60.363 37.037 4.59 0.00 41.92 2.24
2991 3112 8.676401 GGTTTTTACAAACTGGTCACTTTACTA 58.324 33.333 4.59 0.00 41.92 1.82
2992 3113 9.494479 GTTTTTACAAACTGGTCACTTTACTAC 57.506 33.333 0.00 0.00 39.49 2.73
2993 3114 7.790823 TTTACAAACTGGTCACTTTACTACC 57.209 36.000 0.00 0.00 0.00 3.18
2994 3115 4.711399 ACAAACTGGTCACTTTACTACCC 58.289 43.478 0.00 0.00 31.97 3.69
2995 3116 4.070009 CAAACTGGTCACTTTACTACCCC 58.930 47.826 0.00 0.00 31.97 4.95
2996 3117 2.263545 ACTGGTCACTTTACTACCCCC 58.736 52.381 0.00 0.00 31.97 5.40
2997 3118 2.158050 ACTGGTCACTTTACTACCCCCT 60.158 50.000 0.00 0.00 31.97 4.79
2998 3119 2.236395 CTGGTCACTTTACTACCCCCTG 59.764 54.545 0.00 0.00 31.97 4.45
2999 3120 2.158127 TGGTCACTTTACTACCCCCTGA 60.158 50.000 0.00 0.00 31.97 3.86
3000 3121 2.500504 GGTCACTTTACTACCCCCTGAG 59.499 54.545 0.00 0.00 0.00 3.35
3001 3122 3.438183 GTCACTTTACTACCCCCTGAGA 58.562 50.000 0.00 0.00 0.00 3.27
3002 3123 4.031611 GTCACTTTACTACCCCCTGAGAT 58.968 47.826 0.00 0.00 0.00 2.75
3003 3124 4.099727 GTCACTTTACTACCCCCTGAGATC 59.900 50.000 0.00 0.00 0.00 2.75
3004 3125 4.016479 TCACTTTACTACCCCCTGAGATCT 60.016 45.833 0.00 0.00 0.00 2.75
3005 3126 5.195146 TCACTTTACTACCCCCTGAGATCTA 59.805 44.000 0.00 0.00 0.00 1.98
3006 3127 5.897824 CACTTTACTACCCCCTGAGATCTAA 59.102 44.000 0.00 0.00 0.00 2.10
3007 3128 6.383147 CACTTTACTACCCCCTGAGATCTAAA 59.617 42.308 0.00 0.00 0.00 1.85
3008 3129 6.964086 ACTTTACTACCCCCTGAGATCTAAAA 59.036 38.462 0.00 0.00 0.00 1.52
3009 3130 6.803366 TTACTACCCCCTGAGATCTAAAAC 57.197 41.667 0.00 0.00 0.00 2.43
3010 3131 4.038633 ACTACCCCCTGAGATCTAAAACC 58.961 47.826 0.00 0.00 0.00 3.27
3011 3132 1.838077 ACCCCCTGAGATCTAAAACCG 59.162 52.381 0.00 0.00 0.00 4.44
3012 3133 1.141053 CCCCCTGAGATCTAAAACCGG 59.859 57.143 0.00 0.00 0.00 5.28
3013 3134 1.141053 CCCCTGAGATCTAAAACCGGG 59.859 57.143 6.32 0.00 0.00 5.73
3014 3135 1.838077 CCCTGAGATCTAAAACCGGGT 59.162 52.381 6.32 0.00 0.00 5.28
3015 3136 3.036091 CCCTGAGATCTAAAACCGGGTA 58.964 50.000 6.32 0.00 0.00 3.69
3016 3137 3.646637 CCCTGAGATCTAAAACCGGGTAT 59.353 47.826 6.32 0.00 0.00 2.73
3017 3138 4.102681 CCCTGAGATCTAAAACCGGGTATT 59.897 45.833 6.32 0.00 0.00 1.89
3018 3139 5.397559 CCCTGAGATCTAAAACCGGGTATTT 60.398 44.000 6.32 6.90 0.00 1.40
3019 3140 6.183361 CCCTGAGATCTAAAACCGGGTATTTA 60.183 42.308 6.32 7.74 0.00 1.40
3020 3141 7.277396 CCTGAGATCTAAAACCGGGTATTTAA 58.723 38.462 6.32 1.14 0.00 1.52
3021 3142 7.226128 CCTGAGATCTAAAACCGGGTATTTAAC 59.774 40.741 6.32 3.87 0.00 2.01
3032 3153 3.664551 GGTATTTAACCCCCTGAGCTT 57.335 47.619 0.00 0.00 43.16 3.74
3033 3154 3.977312 GGTATTTAACCCCCTGAGCTTT 58.023 45.455 0.00 0.00 43.16 3.51
3034 3155 3.952323 GGTATTTAACCCCCTGAGCTTTC 59.048 47.826 0.00 0.00 43.16 2.62
3035 3156 3.825908 ATTTAACCCCCTGAGCTTTCA 57.174 42.857 0.00 0.00 0.00 2.69
3036 3157 3.825908 TTTAACCCCCTGAGCTTTCAT 57.174 42.857 0.00 0.00 0.00 2.57
3037 3158 2.806945 TAACCCCCTGAGCTTTCATG 57.193 50.000 0.00 0.00 0.00 3.07
3038 3159 0.779997 AACCCCCTGAGCTTTCATGT 59.220 50.000 0.00 0.00 0.00 3.21
3039 3160 0.038744 ACCCCCTGAGCTTTCATGTG 59.961 55.000 0.00 0.00 0.00 3.21
3040 3161 0.329261 CCCCCTGAGCTTTCATGTGA 59.671 55.000 0.00 0.00 0.00 3.58
3041 3162 1.272092 CCCCCTGAGCTTTCATGTGAA 60.272 52.381 0.00 0.00 0.00 3.18
3042 3163 2.622452 CCCCCTGAGCTTTCATGTGAAT 60.622 50.000 0.00 0.00 33.54 2.57
3043 3164 2.686915 CCCCTGAGCTTTCATGTGAATC 59.313 50.000 0.00 0.00 33.54 2.52
3044 3165 3.349927 CCCTGAGCTTTCATGTGAATCA 58.650 45.455 0.00 0.00 33.54 2.57
3045 3166 3.952323 CCCTGAGCTTTCATGTGAATCAT 59.048 43.478 0.00 0.00 37.22 2.45
3046 3167 4.036498 CCCTGAGCTTTCATGTGAATCATC 59.964 45.833 0.00 0.00 34.09 2.92
3047 3168 4.036498 CCTGAGCTTTCATGTGAATCATCC 59.964 45.833 0.00 0.00 34.09 3.51
3048 3169 3.949754 TGAGCTTTCATGTGAATCATCCC 59.050 43.478 0.00 0.00 34.09 3.85
3049 3170 4.205587 GAGCTTTCATGTGAATCATCCCT 58.794 43.478 0.00 0.00 34.09 4.20
3050 3171 5.104402 TGAGCTTTCATGTGAATCATCCCTA 60.104 40.000 0.00 0.00 34.09 3.53
3051 3172 5.759059 AGCTTTCATGTGAATCATCCCTAA 58.241 37.500 0.00 0.00 34.09 2.69
3052 3173 5.591877 AGCTTTCATGTGAATCATCCCTAAC 59.408 40.000 0.00 0.00 34.09 2.34
3053 3174 5.591877 GCTTTCATGTGAATCATCCCTAACT 59.408 40.000 0.00 0.00 34.09 2.24
3054 3175 6.238593 GCTTTCATGTGAATCATCCCTAACTC 60.239 42.308 0.00 0.00 34.09 3.01
3055 3176 6.566079 TTCATGTGAATCATCCCTAACTCT 57.434 37.500 0.00 0.00 34.09 3.24
3056 3177 5.922053 TCATGTGAATCATCCCTAACTCTG 58.078 41.667 0.00 0.00 34.09 3.35
3057 3178 5.662657 TCATGTGAATCATCCCTAACTCTGA 59.337 40.000 0.00 0.00 34.09 3.27
3058 3179 6.328410 TCATGTGAATCATCCCTAACTCTGAT 59.672 38.462 0.00 0.00 34.09 2.90
3059 3180 6.566079 TGTGAATCATCCCTAACTCTGATT 57.434 37.500 0.00 0.00 40.16 2.57
3060 3181 7.675161 TGTGAATCATCCCTAACTCTGATTA 57.325 36.000 0.00 0.00 38.19 1.75
3061 3182 7.730084 TGTGAATCATCCCTAACTCTGATTAG 58.270 38.462 0.00 0.00 38.19 1.73
3062 3183 7.565029 TGTGAATCATCCCTAACTCTGATTAGA 59.435 37.037 0.00 0.00 38.19 2.10
3073 3194 4.465040 CTCTGATTAGAGCGGATTTTGC 57.535 45.455 0.97 0.00 43.62 3.68
3074 3195 3.872696 TCTGATTAGAGCGGATTTTGCA 58.127 40.909 0.00 0.00 33.85 4.08
3075 3196 4.260985 TCTGATTAGAGCGGATTTTGCAA 58.739 39.130 0.00 0.00 33.85 4.08
3076 3197 4.333649 TCTGATTAGAGCGGATTTTGCAAG 59.666 41.667 0.00 0.00 33.85 4.01
3077 3198 2.919666 TTAGAGCGGATTTTGCAAGC 57.080 45.000 0.00 0.00 33.85 4.01
3078 3199 0.726827 TAGAGCGGATTTTGCAAGCG 59.273 50.000 0.00 0.00 33.85 4.68
3079 3200 1.514873 GAGCGGATTTTGCAAGCGG 60.515 57.895 0.00 0.00 33.85 5.52
3080 3201 2.200170 GAGCGGATTTTGCAAGCGGT 62.200 55.000 0.00 0.00 33.85 5.68
3081 3202 1.372872 GCGGATTTTGCAAGCGGTT 60.373 52.632 0.00 0.00 0.00 4.44
3082 3203 0.943835 GCGGATTTTGCAAGCGGTTT 60.944 50.000 0.00 0.00 0.00 3.27
3083 3204 1.496934 CGGATTTTGCAAGCGGTTTT 58.503 45.000 0.00 0.00 0.00 2.43
3084 3205 1.192090 CGGATTTTGCAAGCGGTTTTG 59.808 47.619 0.00 0.00 0.00 2.44
3085 3206 1.530720 GGATTTTGCAAGCGGTTTTGG 59.469 47.619 0.00 0.00 0.00 3.28
3086 3207 0.943673 ATTTTGCAAGCGGTTTTGGC 59.056 45.000 0.00 0.00 0.00 4.52
3087 3208 0.107945 TTTTGCAAGCGGTTTTGGCT 60.108 45.000 0.00 0.00 44.02 4.75
3088 3209 0.747255 TTTGCAAGCGGTTTTGGCTA 59.253 45.000 0.00 0.00 40.53 3.93
3089 3210 0.031449 TTGCAAGCGGTTTTGGCTAC 59.969 50.000 0.00 0.00 40.53 3.58
3090 3211 1.442017 GCAAGCGGTTTTGGCTACG 60.442 57.895 0.00 0.00 40.53 3.51
3091 3212 1.946267 CAAGCGGTTTTGGCTACGT 59.054 52.632 0.00 0.00 40.53 3.57
3092 3213 0.385473 CAAGCGGTTTTGGCTACGTG 60.385 55.000 0.00 0.00 40.53 4.49
3093 3214 1.512156 AAGCGGTTTTGGCTACGTGG 61.512 55.000 0.00 0.00 40.53 4.94
3094 3215 2.559330 CGGTTTTGGCTACGTGGC 59.441 61.111 16.51 16.51 42.18 5.01
3101 3222 3.102097 GGCTACGTGGCAAGATGC 58.898 61.111 25.79 10.25 44.08 3.91
3111 3232 2.486796 GCAAGATGCACCTCCTTCC 58.513 57.895 0.00 0.00 44.26 3.46
3112 3233 0.034670 GCAAGATGCACCTCCTTCCT 60.035 55.000 0.00 0.00 44.26 3.36
3113 3234 1.747709 CAAGATGCACCTCCTTCCTG 58.252 55.000 0.00 0.00 0.00 3.86
3114 3235 1.280133 CAAGATGCACCTCCTTCCTGA 59.720 52.381 0.00 0.00 0.00 3.86
3115 3236 0.908198 AGATGCACCTCCTTCCTGAC 59.092 55.000 0.00 0.00 0.00 3.51
3116 3237 0.908198 GATGCACCTCCTTCCTGACT 59.092 55.000 0.00 0.00 0.00 3.41
3117 3238 1.280421 GATGCACCTCCTTCCTGACTT 59.720 52.381 0.00 0.00 0.00 3.01
3118 3239 0.397941 TGCACCTCCTTCCTGACTTG 59.602 55.000 0.00 0.00 0.00 3.16
3119 3240 0.957888 GCACCTCCTTCCTGACTTGC 60.958 60.000 0.00 0.00 0.00 4.01
3120 3241 0.397941 CACCTCCTTCCTGACTTGCA 59.602 55.000 0.00 0.00 0.00 4.08
3121 3242 0.689623 ACCTCCTTCCTGACTTGCAG 59.310 55.000 0.00 0.00 44.49 4.41
3122 3243 0.676151 CCTCCTTCCTGACTTGCAGC 60.676 60.000 0.00 0.00 43.50 5.25
3123 3244 0.676151 CTCCTTCCTGACTTGCAGCC 60.676 60.000 0.00 0.00 43.50 4.85
3124 3245 2.037136 CCTTCCTGACTTGCAGCCG 61.037 63.158 0.00 0.00 43.50 5.52
3125 3246 2.032528 TTCCTGACTTGCAGCCGG 59.967 61.111 0.00 0.00 43.50 6.13
3126 3247 4.704833 TCCTGACTTGCAGCCGGC 62.705 66.667 21.89 21.89 43.50 6.13
3128 3249 4.711949 CTGACTTGCAGCCGGCCT 62.712 66.667 26.15 7.86 43.89 5.19
3129 3250 4.704833 TGACTTGCAGCCGGCCTC 62.705 66.667 26.15 16.19 43.89 4.70
3140 3261 2.506438 CGGCCTCGTCCGTTCTTC 60.506 66.667 0.00 0.00 44.18 2.87
3141 3262 2.654877 GGCCTCGTCCGTTCTTCA 59.345 61.111 0.00 0.00 0.00 3.02
3142 3263 1.218316 GGCCTCGTCCGTTCTTCAT 59.782 57.895 0.00 0.00 0.00 2.57
3143 3264 0.806492 GGCCTCGTCCGTTCTTCATC 60.806 60.000 0.00 0.00 0.00 2.92
3144 3265 0.108804 GCCTCGTCCGTTCTTCATCA 60.109 55.000 0.00 0.00 0.00 3.07
3145 3266 1.471676 GCCTCGTCCGTTCTTCATCAT 60.472 52.381 0.00 0.00 0.00 2.45
3146 3267 2.893637 CCTCGTCCGTTCTTCATCATT 58.106 47.619 0.00 0.00 0.00 2.57
3147 3268 2.860735 CCTCGTCCGTTCTTCATCATTC 59.139 50.000 0.00 0.00 0.00 2.67
3148 3269 3.429547 CCTCGTCCGTTCTTCATCATTCT 60.430 47.826 0.00 0.00 0.00 2.40
3149 3270 4.202020 CCTCGTCCGTTCTTCATCATTCTA 60.202 45.833 0.00 0.00 0.00 2.10
3150 3271 4.669318 TCGTCCGTTCTTCATCATTCTAC 58.331 43.478 0.00 0.00 0.00 2.59
3151 3272 3.482472 CGTCCGTTCTTCATCATTCTACG 59.518 47.826 0.00 0.00 0.00 3.51
3152 3273 4.421948 GTCCGTTCTTCATCATTCTACGT 58.578 43.478 0.00 0.00 0.00 3.57
3153 3274 4.265556 GTCCGTTCTTCATCATTCTACGTG 59.734 45.833 0.00 0.00 0.00 4.49
3154 3275 3.551890 CCGTTCTTCATCATTCTACGTGG 59.448 47.826 0.00 0.00 0.00 4.94
3155 3276 3.000322 CGTTCTTCATCATTCTACGTGGC 60.000 47.826 0.00 0.00 0.00 5.01
3156 3277 3.885724 TCTTCATCATTCTACGTGGCA 57.114 42.857 0.00 0.00 0.00 4.92
3157 3278 4.200838 TCTTCATCATTCTACGTGGCAA 57.799 40.909 0.00 0.00 0.00 4.52
3158 3279 4.183865 TCTTCATCATTCTACGTGGCAAG 58.816 43.478 0.00 0.00 0.00 4.01
3159 3280 3.885724 TCATCATTCTACGTGGCAAGA 57.114 42.857 7.60 0.00 0.00 3.02
3160 3281 4.406648 TCATCATTCTACGTGGCAAGAT 57.593 40.909 7.60 0.00 0.00 2.40
3161 3282 4.122046 TCATCATTCTACGTGGCAAGATG 58.878 43.478 7.60 9.74 34.48 2.90
3162 3283 2.279741 TCATTCTACGTGGCAAGATGC 58.720 47.619 7.60 0.00 44.08 3.91
3171 3292 3.608432 GCAAGATGCACCCCCTTC 58.392 61.111 0.00 0.00 44.26 3.46
3172 3293 2.054453 GCAAGATGCACCCCCTTCC 61.054 63.158 0.00 0.00 44.26 3.46
3173 3294 1.693640 CAAGATGCACCCCCTTCCT 59.306 57.895 0.00 0.00 0.00 3.36
3174 3295 0.682209 CAAGATGCACCCCCTTCCTG 60.682 60.000 0.00 0.00 0.00 3.86
3175 3296 0.846427 AAGATGCACCCCCTTCCTGA 60.846 55.000 0.00 0.00 0.00 3.86
3176 3297 1.077429 GATGCACCCCCTTCCTGAC 60.077 63.158 0.00 0.00 0.00 3.51
3177 3298 1.542375 ATGCACCCCCTTCCTGACT 60.542 57.895 0.00 0.00 0.00 3.41
3178 3299 1.142688 ATGCACCCCCTTCCTGACTT 61.143 55.000 0.00 0.00 0.00 3.01
3179 3300 1.303643 GCACCCCCTTCCTGACTTG 60.304 63.158 0.00 0.00 0.00 3.16
3180 3301 1.303643 CACCCCCTTCCTGACTTGC 60.304 63.158 0.00 0.00 0.00 4.01
3181 3302 1.774217 ACCCCCTTCCTGACTTGCA 60.774 57.895 0.00 0.00 0.00 4.08
3182 3303 1.001641 CCCCCTTCCTGACTTGCAG 60.002 63.158 0.00 0.00 44.49 4.41
3183 3304 1.676967 CCCCTTCCTGACTTGCAGC 60.677 63.158 0.00 0.00 43.50 5.25
3184 3305 1.676967 CCCTTCCTGACTTGCAGCC 60.677 63.158 0.00 0.00 43.50 4.85
3185 3306 2.037136 CCTTCCTGACTTGCAGCCG 61.037 63.158 0.00 0.00 43.50 5.52
3186 3307 2.032528 TTCCTGACTTGCAGCCGG 59.967 61.111 0.00 0.00 43.50 6.13
3187 3308 4.704833 TCCTGACTTGCAGCCGGC 62.705 66.667 21.89 21.89 43.50 6.13
3189 3310 4.711949 CTGACTTGCAGCCGGCCT 62.712 66.667 26.15 7.86 43.89 5.19
3190 3311 4.704833 TGACTTGCAGCCGGCCTC 62.705 66.667 26.15 16.19 43.89 4.70
3201 3322 2.506438 CGGCCTCGTCCGTTCTTC 60.506 66.667 0.00 0.00 44.18 2.87
3202 3323 2.654877 GGCCTCGTCCGTTCTTCA 59.345 61.111 0.00 0.00 0.00 3.02
3203 3324 1.218316 GGCCTCGTCCGTTCTTCAT 59.782 57.895 0.00 0.00 0.00 2.57
3204 3325 0.391263 GGCCTCGTCCGTTCTTCATT 60.391 55.000 0.00 0.00 0.00 2.57
3205 3326 1.134907 GGCCTCGTCCGTTCTTCATTA 60.135 52.381 0.00 0.00 0.00 1.90
3206 3327 2.483188 GGCCTCGTCCGTTCTTCATTAT 60.483 50.000 0.00 0.00 0.00 1.28
3207 3328 3.195661 GCCTCGTCCGTTCTTCATTATT 58.804 45.455 0.00 0.00 0.00 1.40
3208 3329 3.245519 GCCTCGTCCGTTCTTCATTATTC 59.754 47.826 0.00 0.00 0.00 1.75
3209 3330 4.683832 CCTCGTCCGTTCTTCATTATTCT 58.316 43.478 0.00 0.00 0.00 2.40
3210 3331 5.109903 CCTCGTCCGTTCTTCATTATTCTT 58.890 41.667 0.00 0.00 0.00 2.52
3211 3332 5.581085 CCTCGTCCGTTCTTCATTATTCTTT 59.419 40.000 0.00 0.00 0.00 2.52
3212 3333 6.092259 CCTCGTCCGTTCTTCATTATTCTTTT 59.908 38.462 0.00 0.00 0.00 2.27
3213 3334 7.360946 CCTCGTCCGTTCTTCATTATTCTTTTT 60.361 37.037 0.00 0.00 0.00 1.94
3249 3370 9.877178 AATCGTTCTTCATTATTCTACAAGTCT 57.123 29.630 0.00 0.00 0.00 3.24
3250 3371 8.689251 TCGTTCTTCATTATTCTACAAGTCTG 57.311 34.615 0.00 0.00 0.00 3.51
3251 3372 8.520351 TCGTTCTTCATTATTCTACAAGTCTGA 58.480 33.333 0.00 0.00 0.00 3.27
3252 3373 8.802856 CGTTCTTCATTATTCTACAAGTCTGAG 58.197 37.037 0.00 0.00 0.00 3.35
3253 3374 8.599774 GTTCTTCATTATTCTACAAGTCTGAGC 58.400 37.037 0.00 0.00 0.00 4.26
3254 3375 7.840931 TCTTCATTATTCTACAAGTCTGAGCA 58.159 34.615 0.00 0.00 0.00 4.26
3255 3376 8.481314 TCTTCATTATTCTACAAGTCTGAGCAT 58.519 33.333 0.00 0.00 0.00 3.79
3256 3377 8.654230 TTCATTATTCTACAAGTCTGAGCATC 57.346 34.615 0.00 0.00 0.00 3.91
3257 3378 8.016301 TCATTATTCTACAAGTCTGAGCATCT 57.984 34.615 0.00 0.00 34.92 2.90
3258 3379 8.481314 TCATTATTCTACAAGTCTGAGCATCTT 58.519 33.333 0.00 0.00 34.92 2.40
3259 3380 8.549548 CATTATTCTACAAGTCTGAGCATCTTG 58.450 37.037 11.31 11.31 42.60 3.02
3260 3381 4.462508 TCTACAAGTCTGAGCATCTTGG 57.537 45.455 14.93 4.40 41.64 3.61
3261 3382 1.818642 ACAAGTCTGAGCATCTTGGC 58.181 50.000 14.93 0.00 41.64 4.52
3262 3383 0.725686 CAAGTCTGAGCATCTTGGCG 59.274 55.000 0.00 0.00 39.27 5.69
3263 3384 0.392193 AAGTCTGAGCATCTTGGCGG 60.392 55.000 0.00 0.00 39.27 6.13
3264 3385 1.078848 GTCTGAGCATCTTGGCGGT 60.079 57.895 0.00 0.00 39.27 5.68
3265 3386 1.078918 TCTGAGCATCTTGGCGGTG 60.079 57.895 0.00 0.00 39.27 4.94
3266 3387 1.078918 CTGAGCATCTTGGCGGTGA 60.079 57.895 0.00 0.00 39.27 4.02
3267 3388 1.078918 TGAGCATCTTGGCGGTGAG 60.079 57.895 0.00 0.00 39.27 3.51
3278 3399 3.753434 CGGTGAGCCTGCTCGTCT 61.753 66.667 13.98 0.00 45.48 4.18
3279 3400 2.183046 GGTGAGCCTGCTCGTCTC 59.817 66.667 13.98 5.12 45.48 3.36
3280 3401 2.183046 GTGAGCCTGCTCGTCTCC 59.817 66.667 13.98 0.00 45.48 3.71
3281 3402 2.283173 TGAGCCTGCTCGTCTCCA 60.283 61.111 13.98 0.00 45.48 3.86
3282 3403 2.183046 GAGCCTGCTCGTCTCCAC 59.817 66.667 2.98 0.00 33.06 4.02
3285 3406 4.056125 CCTGCTCGTCTCCACGCA 62.056 66.667 0.00 0.00 46.28 5.24
3286 3407 2.807045 CTGCTCGTCTCCACGCAC 60.807 66.667 0.00 0.00 46.28 5.34
3287 3408 4.357947 TGCTCGTCTCCACGCACC 62.358 66.667 0.00 0.00 46.28 5.01
3289 3410 4.778415 CTCGTCTCCACGCACCGG 62.778 72.222 0.00 0.00 46.28 5.28
3310 3431 4.980903 CACGCGCAACTGGCCAAC 62.981 66.667 7.01 0.00 40.31 3.77
3314 3435 3.283684 CGCAACTGGCCAACCGAA 61.284 61.111 7.01 0.00 40.31 4.30
3315 3436 2.644992 GCAACTGGCCAACCGAAG 59.355 61.111 7.01 0.00 39.70 3.79
3328 3449 4.988065 CGAAGGAAGTTCTGGCGA 57.012 55.556 2.25 0.00 32.33 5.54
3329 3450 2.446341 CGAAGGAAGTTCTGGCGAC 58.554 57.895 2.25 0.00 32.33 5.19
3330 3451 1.014564 CGAAGGAAGTTCTGGCGACC 61.015 60.000 2.25 0.00 32.33 4.79
3331 3452 0.034896 GAAGGAAGTTCTGGCGACCA 59.965 55.000 2.25 0.00 31.73 4.02
3332 3453 0.250338 AAGGAAGTTCTGGCGACCAC 60.250 55.000 2.25 0.00 0.00 4.16
3333 3454 1.122019 AGGAAGTTCTGGCGACCACT 61.122 55.000 2.25 0.00 0.00 4.00
3334 3455 0.670854 GGAAGTTCTGGCGACCACTC 60.671 60.000 2.25 0.00 0.00 3.51
3335 3456 1.006102 AAGTTCTGGCGACCACTCG 60.006 57.895 0.00 0.00 43.28 4.18
3353 3474 3.172575 CGTGCGCGACCAGTACAG 61.173 66.667 16.08 0.00 41.33 2.74
3354 3475 3.479269 GTGCGCGACCAGTACAGC 61.479 66.667 12.10 0.00 0.00 4.40
3355 3476 3.680786 TGCGCGACCAGTACAGCT 61.681 61.111 12.10 0.00 0.00 4.24
3356 3477 3.181967 GCGCGACCAGTACAGCTG 61.182 66.667 12.10 13.48 44.63 4.24
3357 3478 2.258591 CGCGACCAGTACAGCTGT 59.741 61.111 25.12 25.12 43.55 4.40
3358 3479 2.088763 CGCGACCAGTACAGCTGTG 61.089 63.158 29.57 14.82 43.55 3.66
3359 3480 2.383527 GCGACCAGTACAGCTGTGC 61.384 63.158 29.57 27.48 43.55 4.57
3360 3481 1.738099 CGACCAGTACAGCTGTGCC 60.738 63.158 29.57 18.70 43.55 5.01
3361 3482 1.376037 GACCAGTACAGCTGTGCCC 60.376 63.158 29.57 16.19 43.55 5.36
3362 3483 1.831652 GACCAGTACAGCTGTGCCCT 61.832 60.000 29.57 18.14 43.55 5.19
3363 3484 1.078848 CCAGTACAGCTGTGCCCTC 60.079 63.158 29.57 13.39 43.55 4.30
3364 3485 1.446792 CAGTACAGCTGTGCCCTCG 60.447 63.158 29.57 12.57 40.27 4.63
3365 3486 1.908793 AGTACAGCTGTGCCCTCGT 60.909 57.895 29.57 8.75 0.00 4.18
3366 3487 0.611062 AGTACAGCTGTGCCCTCGTA 60.611 55.000 29.57 3.27 0.00 3.43
3367 3488 0.458025 GTACAGCTGTGCCCTCGTAC 60.458 60.000 29.57 12.83 0.00 3.67
3368 3489 0.611062 TACAGCTGTGCCCTCGTACT 60.611 55.000 29.57 0.00 0.00 2.73
3369 3490 1.153745 CAGCTGTGCCCTCGTACTC 60.154 63.158 5.25 0.00 0.00 2.59
3370 3491 1.606601 AGCTGTGCCCTCGTACTCA 60.607 57.895 0.00 0.00 0.00 3.41
3371 3492 1.185618 AGCTGTGCCCTCGTACTCAA 61.186 55.000 0.00 0.00 0.00 3.02
3372 3493 0.737715 GCTGTGCCCTCGTACTCAAG 60.738 60.000 0.00 0.00 0.00 3.02
3373 3494 0.737715 CTGTGCCCTCGTACTCAAGC 60.738 60.000 0.00 0.00 0.00 4.01
3374 3495 1.185618 TGTGCCCTCGTACTCAAGCT 61.186 55.000 0.00 0.00 0.00 3.74
3375 3496 0.458716 GTGCCCTCGTACTCAAGCTC 60.459 60.000 0.00 0.00 0.00 4.09
3376 3497 0.612174 TGCCCTCGTACTCAAGCTCT 60.612 55.000 0.00 0.00 0.00 4.09
3377 3498 0.101579 GCCCTCGTACTCAAGCTCTC 59.898 60.000 0.00 0.00 0.00 3.20
3378 3499 0.741915 CCCTCGTACTCAAGCTCTCC 59.258 60.000 0.00 0.00 0.00 3.71
3379 3500 0.378962 CCTCGTACTCAAGCTCTCCG 59.621 60.000 0.00 0.00 0.00 4.63
3380 3501 1.370609 CTCGTACTCAAGCTCTCCGA 58.629 55.000 0.00 0.00 0.00 4.55
3381 3502 1.329292 CTCGTACTCAAGCTCTCCGAG 59.671 57.143 0.00 0.00 35.08 4.63
3382 3503 0.378962 CGTACTCAAGCTCTCCGAGG 59.621 60.000 0.00 0.00 0.00 4.63
3383 3504 0.101579 GTACTCAAGCTCTCCGAGGC 59.898 60.000 0.00 0.00 0.00 4.70
3384 3505 1.377366 TACTCAAGCTCTCCGAGGCG 61.377 60.000 0.00 0.00 0.00 5.52
3385 3506 2.361230 TCAAGCTCTCCGAGGCGA 60.361 61.111 0.00 0.00 0.00 5.54
3386 3507 1.938657 CTCAAGCTCTCCGAGGCGAA 61.939 60.000 0.00 0.00 0.00 4.70
3387 3508 1.807573 CAAGCTCTCCGAGGCGAAC 60.808 63.158 0.00 0.00 0.00 3.95
3388 3509 3.343788 AAGCTCTCCGAGGCGAACG 62.344 63.158 0.00 0.00 0.00 3.95
3394 3515 4.675029 CCGAGGCGAACGGTGGTT 62.675 66.667 11.34 0.00 44.57 3.67
3395 3516 3.411351 CGAGGCGAACGGTGGTTG 61.411 66.667 0.00 0.00 36.24 3.77
3396 3517 3.047877 GAGGCGAACGGTGGTTGG 61.048 66.667 0.00 0.00 36.24 3.77
3397 3518 4.636435 AGGCGAACGGTGGTTGGG 62.636 66.667 0.00 0.00 36.24 4.12
3401 3522 4.941309 GAACGGTGGTTGGGCGGT 62.941 66.667 0.00 0.00 36.24 5.68
3402 3523 4.509580 AACGGTGGTTGGGCGGTT 62.510 61.111 0.00 0.00 34.37 4.44
3404 3525 4.939368 CGGTGGTTGGGCGGTTGA 62.939 66.667 0.00 0.00 0.00 3.18
3405 3526 3.292159 GGTGGTTGGGCGGTTGAC 61.292 66.667 0.00 0.00 0.00 3.18
3416 3537 4.651008 GGTTGACGACGGTGGCGA 62.651 66.667 0.00 0.00 0.00 5.54
3417 3538 3.103911 GTTGACGACGGTGGCGAG 61.104 66.667 0.00 0.00 0.00 5.03
3423 3544 4.148825 GACGGTGGCGAGCAGGAT 62.149 66.667 0.00 0.00 0.00 3.24
3424 3545 2.758327 ACGGTGGCGAGCAGGATA 60.758 61.111 0.00 0.00 0.00 2.59
3425 3546 2.088674 GACGGTGGCGAGCAGGATAT 62.089 60.000 0.00 0.00 0.00 1.63
3426 3547 1.069765 CGGTGGCGAGCAGGATATT 59.930 57.895 0.00 0.00 0.00 1.28
3427 3548 1.224069 CGGTGGCGAGCAGGATATTG 61.224 60.000 0.00 0.00 0.00 1.90
3428 3549 0.886490 GGTGGCGAGCAGGATATTGG 60.886 60.000 0.00 0.00 0.00 3.16
3429 3550 1.227943 TGGCGAGCAGGATATTGGC 60.228 57.895 0.00 0.00 0.00 4.52
3430 3551 2.320587 GGCGAGCAGGATATTGGCG 61.321 63.158 0.00 0.00 0.00 5.69
3431 3552 2.959357 GCGAGCAGGATATTGGCGC 61.959 63.158 0.00 0.00 36.12 6.53
3432 3553 2.320587 CGAGCAGGATATTGGCGCC 61.321 63.158 22.73 22.73 0.00 6.53
3433 3554 2.281070 AGCAGGATATTGGCGCCG 60.281 61.111 23.90 5.54 0.00 6.46
3434 3555 3.357079 GCAGGATATTGGCGCCGG 61.357 66.667 23.90 0.00 0.00 6.13
3435 3556 2.425592 CAGGATATTGGCGCCGGA 59.574 61.111 23.90 13.97 0.00 5.14
3436 3557 1.227823 CAGGATATTGGCGCCGGAA 60.228 57.895 23.90 12.40 0.00 4.30
3437 3558 1.071471 AGGATATTGGCGCCGGAAG 59.929 57.895 23.90 0.00 0.00 3.46
3438 3559 2.617274 GGATATTGGCGCCGGAAGC 61.617 63.158 23.90 11.82 38.52 3.86
3450 3571 3.191539 GGAAGCGCCGAAGAGCTG 61.192 66.667 2.29 0.00 40.64 4.24
3451 3572 3.191539 GAAGCGCCGAAGAGCTGG 61.192 66.667 2.29 0.00 40.64 4.85
3452 3573 3.649277 GAAGCGCCGAAGAGCTGGA 62.649 63.158 2.29 0.00 40.64 3.86
3453 3574 3.655810 AAGCGCCGAAGAGCTGGAG 62.656 63.158 2.29 0.00 40.64 3.86
3464 3585 3.414700 GCTGGAGCGTCGGTTGTG 61.415 66.667 0.00 0.00 0.00 3.33
3465 3586 2.338620 CTGGAGCGTCGGTTGTGA 59.661 61.111 0.00 0.00 0.00 3.58
3466 3587 1.734477 CTGGAGCGTCGGTTGTGAG 60.734 63.158 0.00 0.00 0.00 3.51
3467 3588 2.432628 GGAGCGTCGGTTGTGAGG 60.433 66.667 0.00 0.00 0.00 3.86
3468 3589 2.338984 GAGCGTCGGTTGTGAGGT 59.661 61.111 0.00 0.00 0.00 3.85
3469 3590 2.022129 GAGCGTCGGTTGTGAGGTG 61.022 63.158 0.00 0.00 0.00 4.00
3470 3591 3.712881 GCGTCGGTTGTGAGGTGC 61.713 66.667 0.00 0.00 0.00 5.01
3471 3592 2.279851 CGTCGGTTGTGAGGTGCA 60.280 61.111 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 5.179368 CACACCTTCAAATACGACACAATCT 59.821 40.000 0.00 0.00 0.00 2.40
75 76 5.547465 ACTCAATCACACCTTCAAATACGA 58.453 37.500 0.00 0.00 0.00 3.43
102 103 4.613437 ACCAGGAAAATGCATCCTTACAT 58.387 39.130 4.52 0.00 45.06 2.29
149 151 1.070289 GAGCAATAGGAGTTACCCCCG 59.930 57.143 0.00 0.00 40.05 5.73
342 365 5.801444 TCACGCATTTCAAAAATATGCTCAG 59.199 36.000 0.00 0.00 41.84 3.35
683 706 4.921515 GTGAAACTTAGCTGTATGTGACGA 59.078 41.667 0.00 0.00 0.00 4.20
864 890 0.727122 GCTTGCTGACACATGCGTTC 60.727 55.000 0.00 0.00 32.01 3.95
921 947 1.211190 GAGGGTGACACGTACGTCC 59.789 63.158 19.94 16.39 34.88 4.79
973 999 1.071605 GTGAGTGAGCTAGCGTTTGG 58.928 55.000 9.55 0.00 0.00 3.28
1019 1045 2.048222 TCGTGCTGGTGCTGTAGC 60.048 61.111 0.00 0.00 40.48 3.58
1426 1452 1.592400 CTCGGCGGTGTAGTCCTTGA 61.592 60.000 7.21 0.00 0.00 3.02
1721 1747 1.069765 CTGTGTCACGTCCTTGGCT 59.930 57.895 0.00 0.00 0.00 4.75
1753 1779 2.702751 CTTGGTGGCGTCGGTGTACA 62.703 60.000 0.00 0.00 0.00 2.90
1833 1892 1.834263 AGACTTGAGAGTGGCATACCC 59.166 52.381 0.00 0.00 35.88 3.69
1893 1955 5.320723 CGCATCAACACGTAAAATGTGTAT 58.679 37.500 5.40 0.00 46.74 2.29
2356 2419 2.745515 AAACGAAGGCTCTACTGGAC 57.254 50.000 0.00 0.00 0.00 4.02
2383 2446 8.488668 ACTTAGACAAAAGGTGGTAGTAAAAGA 58.511 33.333 0.00 0.00 0.00 2.52
2388 2451 7.506938 ACACTACTTAGACAAAAGGTGGTAGTA 59.493 37.037 0.00 0.00 37.22 1.82
2389 2452 6.325804 ACACTACTTAGACAAAAGGTGGTAGT 59.674 38.462 0.00 0.00 39.03 2.73
2390 2453 6.756221 ACACTACTTAGACAAAAGGTGGTAG 58.244 40.000 0.00 0.00 33.77 3.18
2391 2454 6.736110 ACACTACTTAGACAAAAGGTGGTA 57.264 37.500 0.00 0.00 0.00 3.25
2392 2455 5.625568 ACACTACTTAGACAAAAGGTGGT 57.374 39.130 0.00 0.00 0.00 4.16
2393 2456 6.645415 CACTACACTACTTAGACAAAAGGTGG 59.355 42.308 0.00 0.00 0.00 4.61
2394 2457 7.169308 CACACTACACTACTTAGACAAAAGGTG 59.831 40.741 0.00 0.00 0.00 4.00
2395 2458 7.147776 ACACACTACACTACTTAGACAAAAGGT 60.148 37.037 0.00 0.00 0.00 3.50
2396 2459 7.169308 CACACACTACACTACTTAGACAAAAGG 59.831 40.741 0.00 0.00 0.00 3.11
2397 2460 7.306632 GCACACACTACACTACTTAGACAAAAG 60.307 40.741 0.00 0.00 0.00 2.27
2398 2461 6.477688 GCACACACTACACTACTTAGACAAAA 59.522 38.462 0.00 0.00 0.00 2.44
2399 2462 5.981315 GCACACACTACACTACTTAGACAAA 59.019 40.000 0.00 0.00 0.00 2.83
2400 2463 5.526115 GCACACACTACACTACTTAGACAA 58.474 41.667 0.00 0.00 0.00 3.18
2401 2464 4.319984 CGCACACACTACACTACTTAGACA 60.320 45.833 0.00 0.00 0.00 3.41
2402 2465 4.156915 CGCACACACTACACTACTTAGAC 58.843 47.826 0.00 0.00 0.00 2.59
2403 2466 3.365666 GCGCACACACTACACTACTTAGA 60.366 47.826 0.30 0.00 0.00 2.10
2404 2467 2.915463 GCGCACACACTACACTACTTAG 59.085 50.000 0.30 0.00 0.00 2.18
2405 2468 2.666344 CGCGCACACACTACACTACTTA 60.666 50.000 8.75 0.00 0.00 2.24
2406 2469 1.779569 GCGCACACACTACACTACTT 58.220 50.000 0.30 0.00 0.00 2.24
2407 2470 0.386858 CGCGCACACACTACACTACT 60.387 55.000 8.75 0.00 0.00 2.57
2408 2471 0.662374 ACGCGCACACACTACACTAC 60.662 55.000 5.73 0.00 0.00 2.73
2409 2472 0.386352 GACGCGCACACACTACACTA 60.386 55.000 5.73 0.00 0.00 2.74
2410 2473 1.660575 GACGCGCACACACTACACT 60.661 57.895 5.73 0.00 0.00 3.55
2411 2474 2.654912 GGACGCGCACACACTACAC 61.655 63.158 5.73 0.00 0.00 2.90
2412 2475 2.355363 GGACGCGCACACACTACA 60.355 61.111 5.73 0.00 0.00 2.74
2413 2476 3.110178 GGGACGCGCACACACTAC 61.110 66.667 5.73 0.00 0.00 2.73
2414 2477 1.525718 TAAGGGACGCGCACACACTA 61.526 55.000 5.73 0.00 0.00 2.74
2415 2478 2.765250 CTAAGGGACGCGCACACACT 62.765 60.000 5.73 0.53 0.00 3.55
2416 2479 2.356553 TAAGGGACGCGCACACAC 60.357 61.111 5.73 0.00 0.00 3.82
2417 2480 2.048597 CTAAGGGACGCGCACACA 60.049 61.111 5.73 0.00 0.00 3.72
2418 2481 1.226030 AAACTAAGGGACGCGCACAC 61.226 55.000 5.73 0.95 0.00 3.82
2419 2482 1.070105 AAACTAAGGGACGCGCACA 59.930 52.632 5.73 0.00 0.00 4.57
2420 2483 0.947180 TCAAACTAAGGGACGCGCAC 60.947 55.000 5.73 0.00 0.00 5.34
2421 2484 0.249953 TTCAAACTAAGGGACGCGCA 60.250 50.000 5.73 0.00 0.00 6.09
2422 2485 1.062148 GATTCAAACTAAGGGACGCGC 59.938 52.381 5.73 0.00 0.00 6.86
2423 2486 1.664151 GGATTCAAACTAAGGGACGCG 59.336 52.381 3.53 3.53 0.00 6.01
2424 2487 2.706890 TGGATTCAAACTAAGGGACGC 58.293 47.619 0.00 0.00 0.00 5.19
2425 2488 6.995511 TTTATGGATTCAAACTAAGGGACG 57.004 37.500 0.00 0.00 0.00 4.79
2426 2489 8.293699 ACATTTATGGATTCAAACTAAGGGAC 57.706 34.615 0.00 0.00 0.00 4.46
2427 2490 7.559897 GGACATTTATGGATTCAAACTAAGGGA 59.440 37.037 0.00 0.00 0.00 4.20
2428 2491 7.561356 AGGACATTTATGGATTCAAACTAAGGG 59.439 37.037 0.00 0.00 0.00 3.95
2429 2492 8.525290 AGGACATTTATGGATTCAAACTAAGG 57.475 34.615 0.00 0.00 0.00 2.69
2431 2494 8.673711 CGAAGGACATTTATGGATTCAAACTAA 58.326 33.333 0.00 0.00 0.00 2.24
2432 2495 8.208718 CGAAGGACATTTATGGATTCAAACTA 57.791 34.615 0.00 0.00 0.00 2.24
2433 2496 7.088589 CGAAGGACATTTATGGATTCAAACT 57.911 36.000 0.00 0.00 0.00 2.66
2456 2519 6.908820 GTGGTAGTAAAAGAAACTTGAAACCG 59.091 38.462 0.00 0.00 28.48 4.44
2459 2522 8.584063 AAGGTGGTAGTAAAAGAAACTTGAAA 57.416 30.769 0.00 0.00 0.00 2.69
2460 2523 8.584063 AAAGGTGGTAGTAAAAGAAACTTGAA 57.416 30.769 0.00 0.00 0.00 2.69
2468 2531 8.488668 ACTTAGACAAAAGGTGGTAGTAAAAGA 58.511 33.333 0.00 0.00 0.00 2.52
2479 2542 3.945285 ACACACCACTTAGACAAAAGGTG 59.055 43.478 7.78 7.78 43.77 4.00
2480 2543 3.945285 CACACACCACTTAGACAAAAGGT 59.055 43.478 0.00 0.00 0.00 3.50
2486 2549 2.166870 ACGAACACACACCACTTAGACA 59.833 45.455 0.00 0.00 0.00 3.41
2487 2550 2.793232 GACGAACACACACCACTTAGAC 59.207 50.000 0.00 0.00 0.00 2.59
2488 2551 2.223876 GGACGAACACACACCACTTAGA 60.224 50.000 0.00 0.00 0.00 2.10
2490 2553 1.202557 GGGACGAACACACACCACTTA 60.203 52.381 0.00 0.00 0.00 2.24
2492 2555 1.145377 GGGACGAACACACACCACT 59.855 57.895 0.00 0.00 0.00 4.00
2493 2556 0.463116 AAGGGACGAACACACACCAC 60.463 55.000 0.00 0.00 0.00 4.16
2494 2557 1.069513 CTAAGGGACGAACACACACCA 59.930 52.381 0.00 0.00 0.00 4.17
2495 2558 1.069668 ACTAAGGGACGAACACACACC 59.930 52.381 0.00 0.00 0.00 4.16
2496 2559 2.521105 ACTAAGGGACGAACACACAC 57.479 50.000 0.00 0.00 0.00 3.82
2497 2560 3.199677 CAAACTAAGGGACGAACACACA 58.800 45.455 0.00 0.00 0.00 3.72
2504 2567 3.307199 GGATTCACCAAACTAAGGGACGA 60.307 47.826 0.00 0.00 38.79 4.20
2526 2589 4.928661 ACAAAGCAGTAGAGCATTTACG 57.071 40.909 0.00 0.00 36.85 3.18
2572 2635 2.884012 CACACAGGTCATGCAAAAGGTA 59.116 45.455 0.00 0.00 0.00 3.08
2573 2636 1.682854 CACACAGGTCATGCAAAAGGT 59.317 47.619 0.00 0.00 0.00 3.50
2574 2637 1.682854 ACACACAGGTCATGCAAAAGG 59.317 47.619 0.00 0.00 0.00 3.11
2616 2683 3.693085 GGTAGACAGACACCAATACGAGA 59.307 47.826 0.00 0.00 34.77 4.04
2705 2817 2.280389 CATGACGGCATCCCCTCG 60.280 66.667 0.00 0.00 30.68 4.63
2762 2881 8.237811 TCTGATTTTCTTTGTAAGCTCCTTTT 57.762 30.769 0.00 0.00 0.00 2.27
2834 2955 8.433893 CGCTTATGATCATGATGTCTTTTCTAG 58.566 37.037 18.72 0.00 0.00 2.43
2865 2986 8.253867 TCTGTTAAGACTACTTTCCTGGTTTA 57.746 34.615 0.00 0.00 37.53 2.01
2866 2987 7.133133 TCTGTTAAGACTACTTTCCTGGTTT 57.867 36.000 0.00 0.00 37.53 3.27
2867 2988 6.742559 TCTGTTAAGACTACTTTCCTGGTT 57.257 37.500 0.00 0.00 37.53 3.67
2868 2989 6.742559 TTCTGTTAAGACTACTTTCCTGGT 57.257 37.500 0.00 0.00 37.53 4.00
2869 2990 9.720769 TTTATTCTGTTAAGACTACTTTCCTGG 57.279 33.333 0.00 0.00 37.53 4.45
2875 2996 8.985805 CGTGGTTTTATTCTGTTAAGACTACTT 58.014 33.333 0.00 0.00 39.81 2.24
2876 2997 8.146412 ACGTGGTTTTATTCTGTTAAGACTACT 58.854 33.333 0.00 0.00 30.40 2.57
2877 2998 8.302965 ACGTGGTTTTATTCTGTTAAGACTAC 57.697 34.615 0.00 0.00 29.98 2.73
2878 2999 8.891671 AACGTGGTTTTATTCTGTTAAGACTA 57.108 30.769 0.00 0.00 29.98 2.59
2879 3000 7.797038 AACGTGGTTTTATTCTGTTAAGACT 57.203 32.000 0.00 0.00 29.98 3.24
2880 3001 7.377662 CCAAACGTGGTTTTATTCTGTTAAGAC 59.622 37.037 0.00 0.00 40.42 3.01
2881 3002 7.419204 CCAAACGTGGTTTTATTCTGTTAAGA 58.581 34.615 0.00 0.00 40.42 2.10
2882 3003 6.639279 CCCAAACGTGGTTTTATTCTGTTAAG 59.361 38.462 0.00 0.00 44.30 1.85
2883 3004 6.096564 ACCCAAACGTGGTTTTATTCTGTTAA 59.903 34.615 0.00 0.00 44.30 2.01
2884 3005 5.593502 ACCCAAACGTGGTTTTATTCTGTTA 59.406 36.000 0.00 0.00 44.30 2.41
2885 3006 4.403113 ACCCAAACGTGGTTTTATTCTGTT 59.597 37.500 0.00 0.00 44.30 3.16
2886 3007 3.955551 ACCCAAACGTGGTTTTATTCTGT 59.044 39.130 0.00 0.00 44.30 3.41
2887 3008 4.577834 ACCCAAACGTGGTTTTATTCTG 57.422 40.909 0.00 0.00 44.30 3.02
2888 3009 5.379187 AGTACCCAAACGTGGTTTTATTCT 58.621 37.500 0.88 0.00 44.30 2.40
2889 3010 5.335113 GGAGTACCCAAACGTGGTTTTATTC 60.335 44.000 0.88 0.00 44.30 1.75
2890 3011 4.520111 GGAGTACCCAAACGTGGTTTTATT 59.480 41.667 0.88 0.00 44.30 1.40
2891 3012 4.074259 GGAGTACCCAAACGTGGTTTTAT 58.926 43.478 0.88 0.00 44.30 1.40
2892 3013 3.118112 TGGAGTACCCAAACGTGGTTTTA 60.118 43.478 0.88 0.00 44.30 1.52
2893 3014 2.300433 GGAGTACCCAAACGTGGTTTT 58.700 47.619 0.88 0.00 44.30 2.43
2894 3015 1.212441 TGGAGTACCCAAACGTGGTTT 59.788 47.619 0.88 0.00 44.30 3.27
2895 3016 0.838608 TGGAGTACCCAAACGTGGTT 59.161 50.000 0.88 0.00 44.30 3.67
2896 3017 2.530491 TGGAGTACCCAAACGTGGT 58.470 52.632 1.30 1.30 44.30 4.16
2904 3025 4.447138 AACAGATTTGTTGGAGTACCCA 57.553 40.909 0.00 0.00 45.54 4.51
2928 3049 9.621629 TGTGGACTTCTTTCTAAGTTTTTCATA 57.378 29.630 0.00 0.00 39.78 2.15
2929 3050 8.519799 TGTGGACTTCTTTCTAAGTTTTTCAT 57.480 30.769 0.00 0.00 39.78 2.57
2930 3051 7.931578 TGTGGACTTCTTTCTAAGTTTTTCA 57.068 32.000 0.00 0.00 39.78 2.69
2933 3054 8.847196 GGTTATGTGGACTTCTTTCTAAGTTTT 58.153 33.333 0.00 0.00 39.78 2.43
2934 3055 7.447545 GGGTTATGTGGACTTCTTTCTAAGTTT 59.552 37.037 0.00 0.00 39.78 2.66
2935 3056 6.940867 GGGTTATGTGGACTTCTTTCTAAGTT 59.059 38.462 0.00 0.00 39.78 2.66
2936 3057 6.473758 GGGTTATGTGGACTTCTTTCTAAGT 58.526 40.000 0.00 0.00 42.36 2.24
2937 3058 5.880887 GGGGTTATGTGGACTTCTTTCTAAG 59.119 44.000 0.00 0.00 0.00 2.18
2938 3059 5.280830 GGGGGTTATGTGGACTTCTTTCTAA 60.281 44.000 0.00 0.00 0.00 2.10
2939 3060 4.226620 GGGGGTTATGTGGACTTCTTTCTA 59.773 45.833 0.00 0.00 0.00 2.10
2940 3061 3.010250 GGGGGTTATGTGGACTTCTTTCT 59.990 47.826 0.00 0.00 0.00 2.52
2941 3062 3.353557 GGGGGTTATGTGGACTTCTTTC 58.646 50.000 0.00 0.00 0.00 2.62
2942 3063 3.451402 GGGGGTTATGTGGACTTCTTT 57.549 47.619 0.00 0.00 0.00 2.52
2959 3080 1.341852 CAGTTTGTAAAAACCCGGGGG 59.658 52.381 27.92 5.70 42.03 5.40
2960 3081 1.341852 CCAGTTTGTAAAAACCCGGGG 59.658 52.381 27.92 12.73 33.28 5.73
2961 3082 2.033372 ACCAGTTTGTAAAAACCCGGG 58.967 47.619 22.25 22.25 32.79 5.73
2962 3083 2.688958 TGACCAGTTTGTAAAAACCCGG 59.311 45.455 11.41 11.41 33.99 5.73
2963 3084 3.379057 AGTGACCAGTTTGTAAAAACCCG 59.621 43.478 4.83 0.00 33.28 5.28
2964 3085 4.994907 AGTGACCAGTTTGTAAAAACCC 57.005 40.909 4.83 0.00 33.28 4.11
2965 3086 7.541162 AGTAAAGTGACCAGTTTGTAAAAACC 58.459 34.615 4.83 0.00 35.70 3.27
2966 3087 9.494479 GTAGTAAAGTGACCAGTTTGTAAAAAC 57.506 33.333 11.83 0.00 35.70 2.43
2967 3088 8.676401 GGTAGTAAAGTGACCAGTTTGTAAAAA 58.324 33.333 11.83 0.00 35.70 1.94
2968 3089 7.282901 GGGTAGTAAAGTGACCAGTTTGTAAAA 59.717 37.037 11.83 0.00 35.70 1.52
2969 3090 6.767423 GGGTAGTAAAGTGACCAGTTTGTAAA 59.233 38.462 11.83 0.00 35.70 2.01
2970 3091 6.290605 GGGTAGTAAAGTGACCAGTTTGTAA 58.709 40.000 11.83 0.00 35.70 2.41
2971 3092 5.221702 GGGGTAGTAAAGTGACCAGTTTGTA 60.222 44.000 11.83 2.87 35.70 2.41
2972 3093 4.445305 GGGGTAGTAAAGTGACCAGTTTGT 60.445 45.833 11.83 3.64 35.70 2.83
2973 3094 4.070009 GGGGTAGTAAAGTGACCAGTTTG 58.930 47.826 11.83 0.00 35.70 2.93
2974 3095 3.073503 GGGGGTAGTAAAGTGACCAGTTT 59.926 47.826 7.81 7.81 37.65 2.66
2975 3096 2.641321 GGGGGTAGTAAAGTGACCAGTT 59.359 50.000 0.00 0.00 34.73 3.16
2976 3097 2.158050 AGGGGGTAGTAAAGTGACCAGT 60.158 50.000 0.00 0.00 34.73 4.00
2977 3098 2.236395 CAGGGGGTAGTAAAGTGACCAG 59.764 54.545 0.00 0.00 34.73 4.00
2978 3099 2.158127 TCAGGGGGTAGTAAAGTGACCA 60.158 50.000 0.00 0.00 34.73 4.02
2979 3100 2.500504 CTCAGGGGGTAGTAAAGTGACC 59.499 54.545 0.00 0.00 0.00 4.02
2980 3101 3.438183 TCTCAGGGGGTAGTAAAGTGAC 58.562 50.000 0.00 0.00 0.00 3.67
2981 3102 3.839323 TCTCAGGGGGTAGTAAAGTGA 57.161 47.619 0.00 0.00 0.00 3.41
2982 3103 4.290942 AGATCTCAGGGGGTAGTAAAGTG 58.709 47.826 0.00 0.00 0.00 3.16
2983 3104 4.628661 AGATCTCAGGGGGTAGTAAAGT 57.371 45.455 0.00 0.00 0.00 2.66
2984 3105 7.273712 GTTTTAGATCTCAGGGGGTAGTAAAG 58.726 42.308 0.00 0.00 0.00 1.85
2985 3106 6.157471 GGTTTTAGATCTCAGGGGGTAGTAAA 59.843 42.308 0.00 0.00 0.00 2.01
2986 3107 5.664457 GGTTTTAGATCTCAGGGGGTAGTAA 59.336 44.000 0.00 0.00 0.00 2.24
2987 3108 5.214293 GGTTTTAGATCTCAGGGGGTAGTA 58.786 45.833 0.00 0.00 0.00 1.82
2988 3109 4.038633 GGTTTTAGATCTCAGGGGGTAGT 58.961 47.826 0.00 0.00 0.00 2.73
2989 3110 3.069729 CGGTTTTAGATCTCAGGGGGTAG 59.930 52.174 0.00 0.00 0.00 3.18
2990 3111 3.036091 CGGTTTTAGATCTCAGGGGGTA 58.964 50.000 0.00 0.00 0.00 3.69
2991 3112 1.838077 CGGTTTTAGATCTCAGGGGGT 59.162 52.381 0.00 0.00 0.00 4.95
2992 3113 1.141053 CCGGTTTTAGATCTCAGGGGG 59.859 57.143 0.00 0.00 0.00 5.40
2993 3114 1.141053 CCCGGTTTTAGATCTCAGGGG 59.859 57.143 0.00 0.00 34.19 4.79
2994 3115 1.838077 ACCCGGTTTTAGATCTCAGGG 59.162 52.381 13.64 13.64 43.03 4.45
2995 3116 4.957684 ATACCCGGTTTTAGATCTCAGG 57.042 45.455 0.00 0.00 0.00 3.86
2996 3117 7.226128 GGTTAAATACCCGGTTTTAGATCTCAG 59.774 40.741 0.00 0.00 41.43 3.35
2997 3118 7.049754 GGTTAAATACCCGGTTTTAGATCTCA 58.950 38.462 0.00 0.00 41.43 3.27
2998 3119 7.488187 GGTTAAATACCCGGTTTTAGATCTC 57.512 40.000 0.00 0.00 41.43 2.75
3012 3133 3.664551 AAGCTCAGGGGGTTAAATACC 57.335 47.619 0.00 0.00 46.99 2.73
3013 3134 4.595986 TGAAAGCTCAGGGGGTTAAATAC 58.404 43.478 0.00 0.00 0.00 1.89
3014 3135 4.938575 TGAAAGCTCAGGGGGTTAAATA 57.061 40.909 0.00 0.00 0.00 1.40
3015 3136 3.825908 TGAAAGCTCAGGGGGTTAAAT 57.174 42.857 0.00 0.00 0.00 1.40
3016 3137 3.181423 ACATGAAAGCTCAGGGGGTTAAA 60.181 43.478 0.00 0.00 37.68 1.52
3017 3138 2.378547 ACATGAAAGCTCAGGGGGTTAA 59.621 45.455 0.00 0.00 37.68 2.01
3018 3139 1.992557 ACATGAAAGCTCAGGGGGTTA 59.007 47.619 0.00 0.00 37.68 2.85
3019 3140 0.779997 ACATGAAAGCTCAGGGGGTT 59.220 50.000 0.00 0.00 37.68 4.11
3020 3141 0.038744 CACATGAAAGCTCAGGGGGT 59.961 55.000 0.00 0.00 37.68 4.95
3021 3142 0.329261 TCACATGAAAGCTCAGGGGG 59.671 55.000 0.00 0.00 37.37 5.40
3022 3143 2.205022 TTCACATGAAAGCTCAGGGG 57.795 50.000 0.00 0.00 38.14 4.79
3023 3144 3.349927 TGATTCACATGAAAGCTCAGGG 58.650 45.455 0.00 0.00 37.68 4.45
3024 3145 4.036498 GGATGATTCACATGAAAGCTCAGG 59.964 45.833 0.00 0.00 39.56 3.86
3025 3146 4.036498 GGGATGATTCACATGAAAGCTCAG 59.964 45.833 0.00 0.00 39.56 3.35
3026 3147 3.949754 GGGATGATTCACATGAAAGCTCA 59.050 43.478 0.00 0.00 39.56 4.26
3027 3148 4.205587 AGGGATGATTCACATGAAAGCTC 58.794 43.478 0.00 0.00 39.56 4.09
3028 3149 4.246712 AGGGATGATTCACATGAAAGCT 57.753 40.909 0.00 0.00 39.56 3.74
3029 3150 5.591877 AGTTAGGGATGATTCACATGAAAGC 59.408 40.000 0.00 0.00 39.56 3.51
3030 3151 7.012138 CAGAGTTAGGGATGATTCACATGAAAG 59.988 40.741 0.00 0.00 39.56 2.62
3031 3152 6.825213 CAGAGTTAGGGATGATTCACATGAAA 59.175 38.462 0.00 0.00 39.56 2.69
3032 3153 6.156775 TCAGAGTTAGGGATGATTCACATGAA 59.843 38.462 0.00 0.00 39.56 2.57
3033 3154 5.662657 TCAGAGTTAGGGATGATTCACATGA 59.337 40.000 0.00 0.00 39.56 3.07
3034 3155 5.922053 TCAGAGTTAGGGATGATTCACATG 58.078 41.667 0.00 0.00 39.56 3.21
3035 3156 6.760440 ATCAGAGTTAGGGATGATTCACAT 57.240 37.500 0.00 0.00 42.47 3.21
3036 3157 6.566079 AATCAGAGTTAGGGATGATTCACA 57.434 37.500 0.00 0.00 37.76 3.58
3037 3158 7.957002 TCTAATCAGAGTTAGGGATGATTCAC 58.043 38.462 2.77 0.00 40.56 3.18
3038 3159 8.187913 CTCTAATCAGAGTTAGGGATGATTCA 57.812 38.462 2.77 0.00 42.99 2.57
3053 3174 3.872696 TGCAAAATCCGCTCTAATCAGA 58.127 40.909 0.00 0.00 0.00 3.27
3054 3175 4.595116 CTTGCAAAATCCGCTCTAATCAG 58.405 43.478 0.00 0.00 0.00 2.90
3055 3176 3.181497 GCTTGCAAAATCCGCTCTAATCA 60.181 43.478 0.00 0.00 0.00 2.57
3056 3177 3.366719 GCTTGCAAAATCCGCTCTAATC 58.633 45.455 0.00 0.00 0.00 1.75
3057 3178 2.223340 CGCTTGCAAAATCCGCTCTAAT 60.223 45.455 0.00 0.00 0.00 1.73
3058 3179 1.130373 CGCTTGCAAAATCCGCTCTAA 59.870 47.619 0.00 0.00 0.00 2.10
3059 3180 0.726827 CGCTTGCAAAATCCGCTCTA 59.273 50.000 0.00 0.00 0.00 2.43
3060 3181 1.503542 CGCTTGCAAAATCCGCTCT 59.496 52.632 0.00 0.00 0.00 4.09
3061 3182 1.514873 CCGCTTGCAAAATCCGCTC 60.515 57.895 0.00 0.00 0.00 5.03
3062 3183 1.805428 AACCGCTTGCAAAATCCGCT 61.805 50.000 0.00 0.00 0.00 5.52
3063 3184 0.943835 AAACCGCTTGCAAAATCCGC 60.944 50.000 0.00 0.00 0.00 5.54
3064 3185 1.192090 CAAAACCGCTTGCAAAATCCG 59.808 47.619 0.00 1.09 0.00 4.18
3065 3186 1.530720 CCAAAACCGCTTGCAAAATCC 59.469 47.619 0.00 0.00 0.00 3.01
3066 3187 1.069973 GCCAAAACCGCTTGCAAAATC 60.070 47.619 0.00 0.00 0.00 2.17
3067 3188 0.943673 GCCAAAACCGCTTGCAAAAT 59.056 45.000 0.00 0.00 0.00 1.82
3068 3189 0.107945 AGCCAAAACCGCTTGCAAAA 60.108 45.000 0.00 0.00 30.57 2.44
3069 3190 0.747255 TAGCCAAAACCGCTTGCAAA 59.253 45.000 0.00 0.00 37.79 3.68
3070 3191 0.031449 GTAGCCAAAACCGCTTGCAA 59.969 50.000 0.00 0.00 37.79 4.08
3071 3192 1.657556 GTAGCCAAAACCGCTTGCA 59.342 52.632 0.00 0.00 37.79 4.08
3072 3193 1.442017 CGTAGCCAAAACCGCTTGC 60.442 57.895 0.00 0.00 37.79 4.01
3073 3194 0.385473 CACGTAGCCAAAACCGCTTG 60.385 55.000 0.00 0.00 37.79 4.01
3074 3195 1.512156 CCACGTAGCCAAAACCGCTT 61.512 55.000 0.00 0.00 37.79 4.68
3075 3196 1.964373 CCACGTAGCCAAAACCGCT 60.964 57.895 0.00 0.00 40.45 5.52
3076 3197 2.559330 CCACGTAGCCAAAACCGC 59.441 61.111 0.00 0.00 0.00 5.68
3077 3198 1.787057 TTGCCACGTAGCCAAAACCG 61.787 55.000 2.86 0.00 0.00 4.44
3078 3199 0.039527 CTTGCCACGTAGCCAAAACC 60.040 55.000 2.86 0.00 0.00 3.27
3079 3200 0.948678 TCTTGCCACGTAGCCAAAAC 59.051 50.000 2.86 0.00 0.00 2.43
3080 3201 1.539388 CATCTTGCCACGTAGCCAAAA 59.461 47.619 2.86 0.00 0.00 2.44
3081 3202 1.164411 CATCTTGCCACGTAGCCAAA 58.836 50.000 2.86 0.00 0.00 3.28
3082 3203 1.305219 GCATCTTGCCACGTAGCCAA 61.305 55.000 2.86 0.00 37.42 4.52
3083 3204 1.745115 GCATCTTGCCACGTAGCCA 60.745 57.895 2.86 0.00 37.42 4.75
3084 3205 1.745115 TGCATCTTGCCACGTAGCC 60.745 57.895 2.86 0.00 44.23 3.93
3085 3206 1.425428 GTGCATCTTGCCACGTAGC 59.575 57.895 0.00 0.00 44.23 3.58
3086 3207 0.391661 AGGTGCATCTTGCCACGTAG 60.392 55.000 0.00 0.00 44.23 3.51
3087 3208 0.391130 GAGGTGCATCTTGCCACGTA 60.391 55.000 0.00 0.00 44.23 3.57
3088 3209 1.672356 GAGGTGCATCTTGCCACGT 60.672 57.895 0.00 0.00 44.23 4.49
3089 3210 2.401766 GGAGGTGCATCTTGCCACG 61.402 63.158 0.00 0.00 44.23 4.94
3090 3211 0.610232 AAGGAGGTGCATCTTGCCAC 60.610 55.000 0.00 0.00 44.23 5.01
3091 3212 0.322816 GAAGGAGGTGCATCTTGCCA 60.323 55.000 0.00 0.00 44.23 4.92
3092 3213 1.034292 GGAAGGAGGTGCATCTTGCC 61.034 60.000 0.00 0.00 44.23 4.52
3093 3214 0.034670 AGGAAGGAGGTGCATCTTGC 60.035 55.000 0.00 3.33 45.29 4.01
3094 3215 1.280133 TCAGGAAGGAGGTGCATCTTG 59.720 52.381 0.00 0.00 0.00 3.02
3095 3216 1.280421 GTCAGGAAGGAGGTGCATCTT 59.720 52.381 0.00 0.00 0.00 2.40
3096 3217 0.908198 GTCAGGAAGGAGGTGCATCT 59.092 55.000 0.00 0.00 0.00 2.90
3097 3218 0.908198 AGTCAGGAAGGAGGTGCATC 59.092 55.000 0.00 0.00 0.00 3.91
3098 3219 1.004044 CAAGTCAGGAAGGAGGTGCAT 59.996 52.381 0.00 0.00 0.00 3.96
3099 3220 0.397941 CAAGTCAGGAAGGAGGTGCA 59.602 55.000 0.00 0.00 0.00 4.57
3100 3221 0.957888 GCAAGTCAGGAAGGAGGTGC 60.958 60.000 0.00 0.00 0.00 5.01
3101 3222 0.397941 TGCAAGTCAGGAAGGAGGTG 59.602 55.000 0.00 0.00 0.00 4.00
3102 3223 0.689623 CTGCAAGTCAGGAAGGAGGT 59.310 55.000 0.00 0.00 39.15 3.85
3103 3224 0.676151 GCTGCAAGTCAGGAAGGAGG 60.676 60.000 0.00 0.00 43.06 4.30
3104 3225 0.676151 GGCTGCAAGTCAGGAAGGAG 60.676 60.000 0.50 0.00 39.41 3.69
3105 3226 1.376466 GGCTGCAAGTCAGGAAGGA 59.624 57.895 0.50 0.00 39.41 3.36
3106 3227 2.037136 CGGCTGCAAGTCAGGAAGG 61.037 63.158 0.50 0.00 39.79 3.46
3107 3228 2.037136 CCGGCTGCAAGTCAGGAAG 61.037 63.158 0.50 0.00 39.79 3.46
3108 3229 2.032528 CCGGCTGCAAGTCAGGAA 59.967 61.111 0.50 0.00 39.79 3.36
3109 3230 4.704833 GCCGGCTGCAAGTCAGGA 62.705 66.667 22.15 0.00 39.79 3.86
3111 3232 4.711949 AGGCCGGCTGCAAGTCAG 62.712 66.667 28.56 0.00 39.79 3.51
3112 3233 4.704833 GAGGCCGGCTGCAAGTCA 62.705 66.667 28.56 0.00 39.79 3.41
3124 3245 0.806492 GATGAAGAACGGACGAGGCC 60.806 60.000 0.00 0.00 0.00 5.19
3125 3246 0.108804 TGATGAAGAACGGACGAGGC 60.109 55.000 0.00 0.00 0.00 4.70
3126 3247 2.586258 ATGATGAAGAACGGACGAGG 57.414 50.000 0.00 0.00 0.00 4.63
3127 3248 3.775202 AGAATGATGAAGAACGGACGAG 58.225 45.455 0.00 0.00 0.00 4.18
3128 3249 3.868757 AGAATGATGAAGAACGGACGA 57.131 42.857 0.00 0.00 0.00 4.20
3129 3250 3.482472 CGTAGAATGATGAAGAACGGACG 59.518 47.826 0.00 0.00 0.00 4.79
3130 3251 4.265556 CACGTAGAATGATGAAGAACGGAC 59.734 45.833 0.00 0.00 33.44 4.79
3131 3252 4.421058 CACGTAGAATGATGAAGAACGGA 58.579 43.478 0.00 0.00 33.44 4.69
3132 3253 3.551890 CCACGTAGAATGATGAAGAACGG 59.448 47.826 0.00 0.00 33.44 4.44
3133 3254 3.000322 GCCACGTAGAATGATGAAGAACG 60.000 47.826 0.00 0.00 35.17 3.95
3134 3255 3.932710 TGCCACGTAGAATGATGAAGAAC 59.067 43.478 0.00 0.00 0.00 3.01
3135 3256 4.200838 TGCCACGTAGAATGATGAAGAA 57.799 40.909 0.00 0.00 0.00 2.52
3136 3257 3.885724 TGCCACGTAGAATGATGAAGA 57.114 42.857 0.00 0.00 0.00 2.87
3137 3258 4.183865 TCTTGCCACGTAGAATGATGAAG 58.816 43.478 0.00 0.00 0.00 3.02
3138 3259 4.200838 TCTTGCCACGTAGAATGATGAA 57.799 40.909 0.00 0.00 0.00 2.57
3139 3260 3.885724 TCTTGCCACGTAGAATGATGA 57.114 42.857 0.00 0.00 0.00 2.92
3140 3261 3.303593 GCATCTTGCCACGTAGAATGATG 60.304 47.826 11.87 11.87 37.42 3.07
3141 3262 2.874701 GCATCTTGCCACGTAGAATGAT 59.125 45.455 0.00 0.00 37.42 2.45
3142 3263 2.279741 GCATCTTGCCACGTAGAATGA 58.720 47.619 0.00 0.00 37.42 2.57
3143 3264 2.009051 TGCATCTTGCCACGTAGAATG 58.991 47.619 0.00 0.00 44.23 2.67
3144 3265 2.009774 GTGCATCTTGCCACGTAGAAT 58.990 47.619 0.00 0.00 44.23 2.40
3145 3266 1.438651 GTGCATCTTGCCACGTAGAA 58.561 50.000 0.00 0.00 44.23 2.10
3146 3267 0.391130 GGTGCATCTTGCCACGTAGA 60.391 55.000 0.00 0.00 44.23 2.59
3147 3268 1.369091 GGGTGCATCTTGCCACGTAG 61.369 60.000 0.00 0.00 44.23 3.51
3148 3269 1.376683 GGGTGCATCTTGCCACGTA 60.377 57.895 0.00 0.00 44.23 3.57
3149 3270 2.672996 GGGTGCATCTTGCCACGT 60.673 61.111 0.00 0.00 44.23 4.49
3150 3271 3.443045 GGGGTGCATCTTGCCACG 61.443 66.667 0.00 0.00 44.23 4.94
3151 3272 3.070576 GGGGGTGCATCTTGCCAC 61.071 66.667 0.00 0.00 44.23 5.01
3152 3273 2.786512 GAAGGGGGTGCATCTTGCCA 62.787 60.000 0.00 0.00 44.23 4.92
3153 3274 2.037847 AAGGGGGTGCATCTTGCC 59.962 61.111 0.00 0.00 44.23 4.52
3154 3275 2.054453 GGAAGGGGGTGCATCTTGC 61.054 63.158 0.00 0.00 45.29 4.01
3155 3276 0.682209 CAGGAAGGGGGTGCATCTTG 60.682 60.000 0.00 0.00 0.00 3.02
3156 3277 0.846427 TCAGGAAGGGGGTGCATCTT 60.846 55.000 0.00 0.00 0.00 2.40
3157 3278 1.229951 TCAGGAAGGGGGTGCATCT 60.230 57.895 0.00 0.00 0.00 2.90
3158 3279 1.077429 GTCAGGAAGGGGGTGCATC 60.077 63.158 0.00 0.00 0.00 3.91
3159 3280 1.142688 AAGTCAGGAAGGGGGTGCAT 61.143 55.000 0.00 0.00 0.00 3.96
3160 3281 1.774217 AAGTCAGGAAGGGGGTGCA 60.774 57.895 0.00 0.00 0.00 4.57
3161 3282 1.303643 CAAGTCAGGAAGGGGGTGC 60.304 63.158 0.00 0.00 0.00 5.01
3162 3283 1.303643 GCAAGTCAGGAAGGGGGTG 60.304 63.158 0.00 0.00 0.00 4.61
3163 3284 1.774217 TGCAAGTCAGGAAGGGGGT 60.774 57.895 0.00 0.00 0.00 4.95
3164 3285 1.001641 CTGCAAGTCAGGAAGGGGG 60.002 63.158 0.00 0.00 39.15 5.40
3165 3286 1.676967 GCTGCAAGTCAGGAAGGGG 60.677 63.158 0.00 0.00 43.06 4.79
3166 3287 1.676967 GGCTGCAAGTCAGGAAGGG 60.677 63.158 0.50 0.00 39.41 3.95
3167 3288 2.037136 CGGCTGCAAGTCAGGAAGG 61.037 63.158 0.50 0.00 39.79 3.46
3168 3289 2.037136 CCGGCTGCAAGTCAGGAAG 61.037 63.158 0.50 0.00 39.79 3.46
3169 3290 2.032528 CCGGCTGCAAGTCAGGAA 59.967 61.111 0.50 0.00 39.79 3.36
3170 3291 4.704833 GCCGGCTGCAAGTCAGGA 62.705 66.667 22.15 0.00 39.79 3.86
3172 3293 4.711949 AGGCCGGCTGCAAGTCAG 62.712 66.667 28.56 0.00 39.79 3.51
3173 3294 4.704833 GAGGCCGGCTGCAAGTCA 62.705 66.667 28.56 0.00 39.79 3.41
3185 3306 0.391263 AATGAAGAACGGACGAGGCC 60.391 55.000 0.00 0.00 0.00 5.19
3186 3307 2.288961 TAATGAAGAACGGACGAGGC 57.711 50.000 0.00 0.00 0.00 4.70
3187 3308 4.683832 AGAATAATGAAGAACGGACGAGG 58.316 43.478 0.00 0.00 0.00 4.63
3188 3309 6.648725 AAAGAATAATGAAGAACGGACGAG 57.351 37.500 0.00 0.00 0.00 4.18
3189 3310 7.429636 AAAAAGAATAATGAAGAACGGACGA 57.570 32.000 0.00 0.00 0.00 4.20
3223 3344 9.877178 AGACTTGTAGAATAATGAAGAACGATT 57.123 29.630 0.00 0.00 0.00 3.34
3224 3345 9.307121 CAGACTTGTAGAATAATGAAGAACGAT 57.693 33.333 0.00 0.00 0.00 3.73
3225 3346 8.520351 TCAGACTTGTAGAATAATGAAGAACGA 58.480 33.333 0.00 0.00 0.00 3.85
3226 3347 8.689251 TCAGACTTGTAGAATAATGAAGAACG 57.311 34.615 0.00 0.00 0.00 3.95
3227 3348 8.599774 GCTCAGACTTGTAGAATAATGAAGAAC 58.400 37.037 0.00 0.00 0.00 3.01
3228 3349 8.314021 TGCTCAGACTTGTAGAATAATGAAGAA 58.686 33.333 0.00 0.00 0.00 2.52
3229 3350 7.840931 TGCTCAGACTTGTAGAATAATGAAGA 58.159 34.615 0.00 0.00 0.00 2.87
3230 3351 8.659925 ATGCTCAGACTTGTAGAATAATGAAG 57.340 34.615 0.00 0.00 0.00 3.02
3231 3352 8.481314 AGATGCTCAGACTTGTAGAATAATGAA 58.519 33.333 0.00 0.00 0.00 2.57
3232 3353 8.016301 AGATGCTCAGACTTGTAGAATAATGA 57.984 34.615 0.00 0.00 0.00 2.57
3233 3354 8.549548 CAAGATGCTCAGACTTGTAGAATAATG 58.450 37.037 0.00 0.00 37.03 1.90
3234 3355 7.714377 CCAAGATGCTCAGACTTGTAGAATAAT 59.286 37.037 0.00 0.00 39.19 1.28
3235 3356 7.044181 CCAAGATGCTCAGACTTGTAGAATAA 58.956 38.462 0.00 0.00 39.19 1.40
3236 3357 6.577103 CCAAGATGCTCAGACTTGTAGAATA 58.423 40.000 0.00 0.00 39.19 1.75
3237 3358 5.426504 CCAAGATGCTCAGACTTGTAGAAT 58.573 41.667 0.00 0.00 39.19 2.40
3238 3359 4.825422 CCAAGATGCTCAGACTTGTAGAA 58.175 43.478 0.00 0.00 39.19 2.10
3239 3360 3.368843 GCCAAGATGCTCAGACTTGTAGA 60.369 47.826 0.00 0.00 39.19 2.59
3240 3361 2.935201 GCCAAGATGCTCAGACTTGTAG 59.065 50.000 0.00 0.00 39.19 2.74
3241 3362 2.675032 CGCCAAGATGCTCAGACTTGTA 60.675 50.000 0.00 0.00 39.19 2.41
3242 3363 1.818642 GCCAAGATGCTCAGACTTGT 58.181 50.000 0.00 0.00 39.19 3.16
3243 3364 0.725686 CGCCAAGATGCTCAGACTTG 59.274 55.000 0.00 0.00 40.12 3.16
3244 3365 0.392193 CCGCCAAGATGCTCAGACTT 60.392 55.000 0.00 0.00 0.00 3.01
3245 3366 1.220206 CCGCCAAGATGCTCAGACT 59.780 57.895 0.00 0.00 0.00 3.24
3246 3367 1.078848 ACCGCCAAGATGCTCAGAC 60.079 57.895 0.00 0.00 0.00 3.51
3247 3368 1.078918 CACCGCCAAGATGCTCAGA 60.079 57.895 0.00 0.00 0.00 3.27
3248 3369 1.078918 TCACCGCCAAGATGCTCAG 60.079 57.895 0.00 0.00 0.00 3.35
3249 3370 1.078918 CTCACCGCCAAGATGCTCA 60.079 57.895 0.00 0.00 0.00 4.26
3250 3371 2.467826 GCTCACCGCCAAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
3251 3372 2.437359 GCTCACCGCCAAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
3261 3382 3.753434 AGACGAGCAGGCTCACCG 61.753 66.667 20.18 10.23 42.86 4.94
3293 3414 4.980903 GTTGGCCAGTTGCGCGTG 62.981 66.667 5.11 0.00 42.61 5.34
3297 3418 3.254014 CTTCGGTTGGCCAGTTGCG 62.254 63.158 5.11 0.00 42.61 4.85
3298 3419 2.644992 CTTCGGTTGGCCAGTTGC 59.355 61.111 5.11 0.00 40.16 4.17
3299 3420 0.821711 TTCCTTCGGTTGGCCAGTTG 60.822 55.000 5.11 0.00 34.09 3.16
3300 3421 0.537371 CTTCCTTCGGTTGGCCAGTT 60.537 55.000 5.11 0.00 34.09 3.16
3301 3422 1.073199 CTTCCTTCGGTTGGCCAGT 59.927 57.895 5.11 0.00 34.09 4.00
3302 3423 0.537371 AACTTCCTTCGGTTGGCCAG 60.537 55.000 5.11 0.00 34.09 4.85
3303 3424 0.536460 GAACTTCCTTCGGTTGGCCA 60.536 55.000 0.00 0.00 34.09 5.36
3304 3425 0.250770 AGAACTTCCTTCGGTTGGCC 60.251 55.000 0.00 0.00 33.60 5.36
3305 3426 0.875059 CAGAACTTCCTTCGGTTGGC 59.125 55.000 0.00 0.00 33.60 4.52
3306 3427 1.523758 CCAGAACTTCCTTCGGTTGG 58.476 55.000 0.00 0.00 33.60 3.77
3307 3428 0.875059 GCCAGAACTTCCTTCGGTTG 59.125 55.000 0.00 0.00 33.60 3.77
3308 3429 0.602905 CGCCAGAACTTCCTTCGGTT 60.603 55.000 0.00 0.00 33.60 4.44
3309 3430 1.004918 CGCCAGAACTTCCTTCGGT 60.005 57.895 0.00 0.00 33.60 4.69
3310 3431 1.014564 GTCGCCAGAACTTCCTTCGG 61.015 60.000 0.00 0.00 33.60 4.30
3311 3432 1.014564 GGTCGCCAGAACTTCCTTCG 61.015 60.000 0.00 0.00 33.60 3.79
3312 3433 0.034896 TGGTCGCCAGAACTTCCTTC 59.965 55.000 0.00 0.00 34.49 3.46
3313 3434 0.250338 GTGGTCGCCAGAACTTCCTT 60.250 55.000 0.00 0.00 34.49 3.36
3314 3435 1.122019 AGTGGTCGCCAGAACTTCCT 61.122 55.000 0.00 0.00 34.49 3.36
3315 3436 0.670854 GAGTGGTCGCCAGAACTTCC 60.671 60.000 0.00 0.00 34.49 3.46
3316 3437 1.009389 CGAGTGGTCGCCAGAACTTC 61.009 60.000 0.00 0.00 39.88 3.01
3317 3438 1.006102 CGAGTGGTCGCCAGAACTT 60.006 57.895 0.00 0.00 39.88 2.66
3318 3439 2.651361 CGAGTGGTCGCCAGAACT 59.349 61.111 0.00 0.00 39.88 3.01
3336 3457 3.172575 CTGTACTGGTCGCGCACG 61.173 66.667 8.75 0.00 42.01 5.34
3337 3458 3.479269 GCTGTACTGGTCGCGCAC 61.479 66.667 8.75 4.68 0.00 5.34
3338 3459 3.680786 AGCTGTACTGGTCGCGCA 61.681 61.111 8.75 0.00 0.00 6.09
3339 3460 3.181967 CAGCTGTACTGGTCGCGC 61.182 66.667 5.25 0.00 43.19 6.86
3347 3468 0.611062 TACGAGGGCACAGCTGTACT 60.611 55.000 21.20 17.66 0.00 2.73
3348 3469 0.458025 GTACGAGGGCACAGCTGTAC 60.458 60.000 21.20 14.70 0.00 2.90
3349 3470 0.611062 AGTACGAGGGCACAGCTGTA 60.611 55.000 21.20 0.00 0.00 2.74
3350 3471 1.878656 GAGTACGAGGGCACAGCTGT 61.879 60.000 15.25 15.25 0.00 4.40
3351 3472 1.153745 GAGTACGAGGGCACAGCTG 60.154 63.158 13.48 13.48 0.00 4.24
3352 3473 1.185618 TTGAGTACGAGGGCACAGCT 61.186 55.000 0.00 0.00 0.00 4.24
3353 3474 0.737715 CTTGAGTACGAGGGCACAGC 60.738 60.000 0.00 0.00 0.00 4.40
3354 3475 0.737715 GCTTGAGTACGAGGGCACAG 60.738 60.000 0.00 0.00 0.00 3.66
3355 3476 1.185618 AGCTTGAGTACGAGGGCACA 61.186 55.000 0.00 0.00 0.00 4.57
3356 3477 0.458716 GAGCTTGAGTACGAGGGCAC 60.459 60.000 0.00 0.00 0.00 5.01
3357 3478 0.612174 AGAGCTTGAGTACGAGGGCA 60.612 55.000 0.00 0.00 0.00 5.36
3358 3479 0.101579 GAGAGCTTGAGTACGAGGGC 59.898 60.000 0.00 0.00 0.00 5.19
3359 3480 0.741915 GGAGAGCTTGAGTACGAGGG 59.258 60.000 0.00 0.00 0.00 4.30
3360 3481 0.378962 CGGAGAGCTTGAGTACGAGG 59.621 60.000 0.00 0.00 0.00 4.63
3361 3482 1.370609 TCGGAGAGCTTGAGTACGAG 58.629 55.000 0.00 0.00 0.00 4.18
3362 3483 3.545724 TCGGAGAGCTTGAGTACGA 57.454 52.632 0.00 0.00 0.00 3.43
3378 3499 3.411351 CAACCACCGTTCGCCTCG 61.411 66.667 0.00 0.00 0.00 4.63
3379 3500 3.047877 CCAACCACCGTTCGCCTC 61.048 66.667 0.00 0.00 0.00 4.70
3380 3501 4.636435 CCCAACCACCGTTCGCCT 62.636 66.667 0.00 0.00 0.00 5.52
3384 3505 4.941309 ACCGCCCAACCACCGTTC 62.941 66.667 0.00 0.00 0.00 3.95
3385 3506 4.509580 AACCGCCCAACCACCGTT 62.510 61.111 0.00 0.00 0.00 4.44
3387 3508 4.939368 TCAACCGCCCAACCACCG 62.939 66.667 0.00 0.00 0.00 4.94
3388 3509 3.292159 GTCAACCGCCCAACCACC 61.292 66.667 0.00 0.00 0.00 4.61
3389 3510 3.656045 CGTCAACCGCCCAACCAC 61.656 66.667 0.00 0.00 0.00 4.16
3390 3511 3.862991 TCGTCAACCGCCCAACCA 61.863 61.111 0.00 0.00 36.19 3.67
3391 3512 3.351416 GTCGTCAACCGCCCAACC 61.351 66.667 0.00 0.00 36.19 3.77
3392 3513 3.708734 CGTCGTCAACCGCCCAAC 61.709 66.667 0.00 0.00 36.19 3.77
3393 3514 4.973055 CCGTCGTCAACCGCCCAA 62.973 66.667 0.00 0.00 36.19 4.12
3399 3520 4.651008 TCGCCACCGTCGTCAACC 62.651 66.667 0.00 0.00 35.54 3.77
3400 3521 3.103911 CTCGCCACCGTCGTCAAC 61.104 66.667 0.00 0.00 35.54 3.18
3406 3527 2.088674 ATATCCTGCTCGCCACCGTC 62.089 60.000 0.00 0.00 35.54 4.79
3407 3528 1.686325 AATATCCTGCTCGCCACCGT 61.686 55.000 0.00 0.00 35.54 4.83
3408 3529 1.069765 AATATCCTGCTCGCCACCG 59.930 57.895 0.00 0.00 0.00 4.94
3409 3530 0.886490 CCAATATCCTGCTCGCCACC 60.886 60.000 0.00 0.00 0.00 4.61
3410 3531 1.510480 GCCAATATCCTGCTCGCCAC 61.510 60.000 0.00 0.00 0.00 5.01
3411 3532 1.227943 GCCAATATCCTGCTCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
3412 3533 2.320587 CGCCAATATCCTGCTCGCC 61.321 63.158 0.00 0.00 0.00 5.54
3413 3534 2.959357 GCGCCAATATCCTGCTCGC 61.959 63.158 0.00 0.00 32.53 5.03
3414 3535 2.320587 GGCGCCAATATCCTGCTCG 61.321 63.158 24.80 0.00 0.00 5.03
3415 3536 2.320587 CGGCGCCAATATCCTGCTC 61.321 63.158 28.98 0.00 0.00 4.26
3416 3537 2.281070 CGGCGCCAATATCCTGCT 60.281 61.111 28.98 0.00 0.00 4.24
3417 3538 3.357079 CCGGCGCCAATATCCTGC 61.357 66.667 28.98 0.00 0.00 4.85
3418 3539 1.227823 TTCCGGCGCCAATATCCTG 60.228 57.895 28.98 7.02 0.00 3.86
3419 3540 1.071471 CTTCCGGCGCCAATATCCT 59.929 57.895 28.98 0.00 0.00 3.24
3420 3541 2.617274 GCTTCCGGCGCCAATATCC 61.617 63.158 28.98 5.69 0.00 2.59
3421 3542 2.946762 GCTTCCGGCGCCAATATC 59.053 61.111 28.98 8.32 0.00 1.63
3433 3554 3.191539 CAGCTCTTCGGCGCTTCC 61.192 66.667 7.64 0.00 33.45 3.46
3434 3555 3.191539 CCAGCTCTTCGGCGCTTC 61.192 66.667 7.64 0.00 33.45 3.86
3435 3556 3.655810 CTCCAGCTCTTCGGCGCTT 62.656 63.158 7.64 0.00 33.45 4.68
3436 3557 4.140599 CTCCAGCTCTTCGGCGCT 62.141 66.667 7.64 0.00 36.83 5.92
3439 3560 4.443266 ACGCTCCAGCTCTTCGGC 62.443 66.667 0.00 0.00 39.32 5.54
3440 3561 2.202676 GACGCTCCAGCTCTTCGG 60.203 66.667 0.00 0.00 39.32 4.30
3441 3562 2.578178 CGACGCTCCAGCTCTTCG 60.578 66.667 0.00 0.00 39.32 3.79
3442 3563 2.202676 CCGACGCTCCAGCTCTTC 60.203 66.667 0.00 0.00 39.32 2.87
3443 3564 2.574955 AACCGACGCTCCAGCTCTT 61.575 57.895 0.00 0.00 39.32 2.85
3444 3565 2.992114 AACCGACGCTCCAGCTCT 60.992 61.111 0.00 0.00 39.32 4.09
3445 3566 2.811317 CAACCGACGCTCCAGCTC 60.811 66.667 0.00 0.00 39.32 4.09
3446 3567 3.616721 ACAACCGACGCTCCAGCT 61.617 61.111 0.00 0.00 39.32 4.24
3447 3568 3.414700 CACAACCGACGCTCCAGC 61.415 66.667 0.00 0.00 37.78 4.85
3448 3569 1.734477 CTCACAACCGACGCTCCAG 60.734 63.158 0.00 0.00 0.00 3.86
3449 3570 2.338620 CTCACAACCGACGCTCCA 59.661 61.111 0.00 0.00 0.00 3.86
3450 3571 2.432628 CCTCACAACCGACGCTCC 60.433 66.667 0.00 0.00 0.00 4.70
3451 3572 2.022129 CACCTCACAACCGACGCTC 61.022 63.158 0.00 0.00 0.00 5.03
3452 3573 2.029073 CACCTCACAACCGACGCT 59.971 61.111 0.00 0.00 0.00 5.07
3453 3574 3.712881 GCACCTCACAACCGACGC 61.713 66.667 0.00 0.00 0.00 5.19
3454 3575 2.279851 TGCACCTCACAACCGACG 60.280 61.111 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.