Multiple sequence alignment - TraesCS4D01G176100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G176100 chr4D 100.000 3496 0 0 1 3496 305378038 305381533 0.000000e+00 6457.0
1 TraesCS4D01G176100 chr4D 94.767 172 9 0 287 458 118575264 118575093 5.750000e-68 268.0
2 TraesCS4D01G176100 chr4D 100.000 65 0 0 2813 2877 305380787 305380851 1.700000e-23 121.0
3 TraesCS4D01G176100 chr4D 100.000 65 0 0 2750 2814 305380850 305380914 1.700000e-23 121.0
4 TraesCS4D01G176100 chr4B 93.878 2401 81 30 459 2813 381692341 381694721 0.000000e+00 3559.0
5 TraesCS4D01G176100 chr4B 94.248 226 8 3 2815 3038 381694662 381694884 1.200000e-89 340.0
6 TraesCS4D01G176100 chr4B 83.582 268 18 11 1 267 381688095 381688337 9.760000e-56 228.0
7 TraesCS4D01G176100 chr4A 94.245 2085 64 18 459 2499 172016429 172014357 0.000000e+00 3134.0
8 TraesCS4D01G176100 chr4A 90.800 250 11 7 2521 2762 172014363 172014118 1.210000e-84 324.0
9 TraesCS4D01G176100 chr4A 84.483 290 19 9 4 291 172016702 172016437 2.680000e-66 263.0
10 TraesCS4D01G176100 chr2B 79.335 421 67 14 1528 1933 82060988 82060573 9.560000e-71 278.0
11 TraesCS4D01G176100 chr2B 95.266 169 8 0 290 458 774111126 774111294 5.750000e-68 268.0
12 TraesCS4D01G176100 chr2B 91.837 49 4 0 3176 3224 417043537 417043585 6.260000e-08 69.4
13 TraesCS4D01G176100 chr5D 93.370 181 12 0 288 468 551601111 551601291 5.750000e-68 268.0
14 TraesCS4D01G176100 chr5D 94.737 171 9 0 288 458 75415154 75415324 2.070000e-67 267.0
15 TraesCS4D01G176100 chr5D 94.220 173 10 0 286 458 33023333 33023505 7.440000e-67 265.0
16 TraesCS4D01G176100 chr2D 94.767 172 9 0 287 458 322842695 322842866 5.750000e-68 268.0
17 TraesCS4D01G176100 chr2D 86.364 176 22 2 1759 1933 52558551 52558377 1.280000e-44 191.0
18 TraesCS4D01G176100 chr1D 94.767 172 9 0 287 458 60183664 60183493 5.750000e-68 268.0
19 TraesCS4D01G176100 chr1D 93.750 48 2 1 3164 3211 485236690 485236736 1.740000e-08 71.3
20 TraesCS4D01G176100 chr3D 94.737 171 9 0 288 458 8339994 8339824 2.070000e-67 267.0
21 TraesCS4D01G176100 chr3D 94.220 173 10 0 286 458 240009475 240009303 7.440000e-67 265.0
22 TraesCS4D01G176100 chr2A 86.932 176 21 2 1759 1933 53927823 53927649 2.750000e-46 196.0
23 TraesCS4D01G176100 chr5A 85.263 95 10 3 3398 3488 604949339 604949245 1.030000e-15 95.3
24 TraesCS4D01G176100 chr5A 83.158 95 12 3 3398 3488 604931027 604930933 2.240000e-12 84.2
25 TraesCS4D01G176100 chr7B 82.692 104 14 3 3396 3495 553060411 553060514 4.810000e-14 89.8
26 TraesCS4D01G176100 chr7B 85.227 88 9 4 3397 3480 87413281 87413194 1.730000e-13 87.9
27 TraesCS4D01G176100 chr3A 82.075 106 13 5 3396 3495 432409592 432409487 6.220000e-13 86.1
28 TraesCS4D01G176100 chr3A 83.019 106 7 9 3396 3495 545883979 545883879 6.220000e-13 86.1
29 TraesCS4D01G176100 chr5B 85.366 82 7 2 3419 3495 633907889 633907970 2.890000e-11 80.5
30 TraesCS4D01G176100 chr6B 94.000 50 1 2 3095 3142 578013706 578013657 1.350000e-09 75.0
31 TraesCS4D01G176100 chr1A 88.136 59 4 3 3164 3220 582526734 582526791 2.250000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G176100 chr4D 305378038 305381533 3495 False 2233.000000 6457 100.000000 1 3496 3 chr4D.!!$F1 3495
1 TraesCS4D01G176100 chr4B 381692341 381694884 2543 False 1949.500000 3559 94.063000 459 3038 2 chr4B.!!$F2 2579
2 TraesCS4D01G176100 chr4A 172014118 172016702 2584 True 1240.333333 3134 89.842667 4 2762 3 chr4A.!!$R1 2758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 358 0.035725 GTCCCTAGGAACCAAACGGG 60.036 60.0 11.48 0.0 44.81 5.28 F
363 366 0.109913 GAACCAAACGGGAGGGACTT 59.890 55.0 0.00 0.0 41.55 3.01 F
364 367 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.0 0.00 0.0 41.55 2.66 F
1997 2066 0.523966 AACGCGAGAGGAGTCAGAAG 59.476 55.0 15.93 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1831 1900 1.306148 CATGGAGGCTGTAGCACATG 58.694 55.000 15.70 15.7 44.36 3.21 R
1979 2048 1.928706 GCTTCTGACTCCTCTCGCGT 61.929 60.000 5.77 0.0 0.00 6.01 R
2059 2128 4.227538 CAAGTTACGCTATATGGAGGACG 58.772 47.826 0.00 0.0 0.00 4.79 R
3459 3536 0.034896 CGCCGCCATAGGATAGGTTT 59.965 55.000 0.00 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 3.060628 CACAACAGTGGTTTTCTTTTGCG 59.939 43.478 0.00 0.00 34.21 4.85
90 91 4.325204 GGTTTTCTTTTGCGAACTCGTTTT 59.675 37.500 0.51 0.00 42.22 2.43
91 92 5.164031 GGTTTTCTTTTGCGAACTCGTTTTT 60.164 36.000 0.51 0.00 42.22 1.94
126 129 4.253685 GAGATCAGGTCGATTTCCAAACA 58.746 43.478 0.00 0.00 33.17 2.83
127 130 4.256920 AGATCAGGTCGATTTCCAAACAG 58.743 43.478 0.00 0.00 33.17 3.16
128 131 3.762407 TCAGGTCGATTTCCAAACAGA 57.238 42.857 0.00 0.00 0.00 3.41
129 132 4.079980 TCAGGTCGATTTCCAAACAGAA 57.920 40.909 0.00 0.00 0.00 3.02
130 133 3.813166 TCAGGTCGATTTCCAAACAGAAC 59.187 43.478 0.00 0.00 0.00 3.01
132 135 2.882137 GGTCGATTTCCAAACAGAACCA 59.118 45.455 0.00 0.00 0.00 3.67
134 137 4.202070 GGTCGATTTCCAAACAGAACCAAA 60.202 41.667 0.00 0.00 0.00 3.28
135 138 4.738252 GTCGATTTCCAAACAGAACCAAAC 59.262 41.667 0.00 0.00 0.00 2.93
136 139 4.399618 TCGATTTCCAAACAGAACCAAACA 59.600 37.500 0.00 0.00 0.00 2.83
137 140 4.502645 CGATTTCCAAACAGAACCAAACAC 59.497 41.667 0.00 0.00 0.00 3.32
138 141 3.878160 TTCCAAACAGAACCAAACACC 57.122 42.857 0.00 0.00 0.00 4.16
139 142 3.094484 TCCAAACAGAACCAAACACCT 57.906 42.857 0.00 0.00 0.00 4.00
140 143 4.237976 TCCAAACAGAACCAAACACCTA 57.762 40.909 0.00 0.00 0.00 3.08
141 144 4.204012 TCCAAACAGAACCAAACACCTAG 58.796 43.478 0.00 0.00 0.00 3.02
142 145 4.080243 TCCAAACAGAACCAAACACCTAGA 60.080 41.667 0.00 0.00 0.00 2.43
143 146 4.642885 CCAAACAGAACCAAACACCTAGAA 59.357 41.667 0.00 0.00 0.00 2.10
144 147 5.221048 CCAAACAGAACCAAACACCTAGAAG 60.221 44.000 0.00 0.00 0.00 2.85
145 148 4.772886 ACAGAACCAAACACCTAGAAGT 57.227 40.909 0.00 0.00 0.00 3.01
146 149 5.112129 ACAGAACCAAACACCTAGAAGTT 57.888 39.130 0.00 0.00 0.00 2.66
147 150 5.123936 ACAGAACCAAACACCTAGAAGTTC 58.876 41.667 0.00 0.00 33.91 3.01
148 151 5.123227 CAGAACCAAACACCTAGAAGTTCA 58.877 41.667 5.50 0.00 35.68 3.18
149 152 5.237344 CAGAACCAAACACCTAGAAGTTCAG 59.763 44.000 5.50 0.84 35.68 3.02
150 153 3.477530 ACCAAACACCTAGAAGTTCAGC 58.522 45.455 5.50 0.00 0.00 4.26
151 154 3.118038 ACCAAACACCTAGAAGTTCAGCA 60.118 43.478 5.50 0.00 0.00 4.41
152 155 3.251004 CCAAACACCTAGAAGTTCAGCAC 59.749 47.826 5.50 0.00 0.00 4.40
153 156 2.841442 ACACCTAGAAGTTCAGCACC 57.159 50.000 5.50 0.00 0.00 5.01
154 157 2.047061 ACACCTAGAAGTTCAGCACCA 58.953 47.619 5.50 0.00 0.00 4.17
155 158 2.639839 ACACCTAGAAGTTCAGCACCAT 59.360 45.455 5.50 0.00 0.00 3.55
156 159 3.838317 ACACCTAGAAGTTCAGCACCATA 59.162 43.478 5.50 0.00 0.00 2.74
157 160 4.471386 ACACCTAGAAGTTCAGCACCATAT 59.529 41.667 5.50 0.00 0.00 1.78
158 161 5.661312 ACACCTAGAAGTTCAGCACCATATA 59.339 40.000 5.50 0.00 0.00 0.86
170 173 8.682710 GTTCAGCACCATATAAATTAACCTTCA 58.317 33.333 0.00 0.00 0.00 3.02
172 175 7.831690 TCAGCACCATATAAATTAACCTTCACA 59.168 33.333 0.00 0.00 0.00 3.58
191 194 8.490355 CCTTCACAAGAGTTTCAAAATTATTGC 58.510 33.333 5.57 0.00 32.31 3.56
197 200 5.010617 AGAGTTTCAAAATTATTGCCGTGGT 59.989 36.000 0.00 0.00 0.00 4.16
201 204 6.927294 TTCAAAATTATTGCCGTGGTTTTT 57.073 29.167 0.00 0.00 0.00 1.94
209 212 1.819288 TGCCGTGGTTTTTGTTCAAGA 59.181 42.857 0.00 0.00 0.00 3.02
212 215 3.061563 GCCGTGGTTTTTGTTCAAGAAAC 59.938 43.478 11.21 11.21 38.43 2.78
214 217 3.302170 CGTGGTTTTTGTTCAAGAAACGG 59.698 43.478 0.00 1.66 41.02 4.44
216 219 4.561213 GTGGTTTTTGTTCAAGAAACGGAG 59.439 41.667 0.00 0.00 41.02 4.63
217 220 4.109766 GGTTTTTGTTCAAGAAACGGAGG 58.890 43.478 0.00 0.00 41.02 4.30
279 282 5.967088 TCTACTCTTTTGGTATCTCTGTGC 58.033 41.667 0.00 0.00 0.00 4.57
296 299 2.046314 CGTGGCACTTAGGGGGTG 60.046 66.667 16.72 0.00 37.70 4.61
297 300 2.890766 CGTGGCACTTAGGGGGTGT 61.891 63.158 16.72 0.00 37.07 4.16
298 301 1.458927 GTGGCACTTAGGGGGTGTT 59.541 57.895 11.13 0.00 37.07 3.32
299 302 0.178973 GTGGCACTTAGGGGGTGTTT 60.179 55.000 11.13 0.00 37.07 2.83
301 304 0.898326 GGCACTTAGGGGGTGTTTGG 60.898 60.000 0.00 0.00 37.07 3.28
302 305 0.178973 GCACTTAGGGGGTGTTTGGT 60.179 55.000 0.00 0.00 37.07 3.67
303 306 1.756333 GCACTTAGGGGGTGTTTGGTT 60.756 52.381 0.00 0.00 37.07 3.67
304 307 2.235891 CACTTAGGGGGTGTTTGGTTC 58.764 52.381 0.00 0.00 0.00 3.62
305 308 1.854280 ACTTAGGGGGTGTTTGGTTCA 59.146 47.619 0.00 0.00 0.00 3.18
306 309 2.158519 ACTTAGGGGGTGTTTGGTTCAG 60.159 50.000 0.00 0.00 0.00 3.02
307 310 1.822425 TAGGGGGTGTTTGGTTCAGA 58.178 50.000 0.00 0.00 0.00 3.27
308 311 0.478507 AGGGGGTGTTTGGTTCAGAG 59.521 55.000 0.00 0.00 0.00 3.35
309 312 0.476771 GGGGGTGTTTGGTTCAGAGA 59.523 55.000 0.00 0.00 0.00 3.10
310 313 1.605753 GGGGTGTTTGGTTCAGAGAC 58.394 55.000 0.00 0.00 0.00 3.36
311 314 1.143073 GGGGTGTTTGGTTCAGAGACT 59.857 52.381 0.00 0.00 0.00 3.24
312 315 2.422945 GGGGTGTTTGGTTCAGAGACTT 60.423 50.000 0.00 0.00 0.00 3.01
313 316 3.288092 GGGTGTTTGGTTCAGAGACTTT 58.712 45.455 0.00 0.00 0.00 2.66
314 317 3.699538 GGGTGTTTGGTTCAGAGACTTTT 59.300 43.478 0.00 0.00 0.00 2.27
315 318 4.159693 GGGTGTTTGGTTCAGAGACTTTTT 59.840 41.667 0.00 0.00 0.00 1.94
316 319 5.358725 GGGTGTTTGGTTCAGAGACTTTTTA 59.641 40.000 0.00 0.00 0.00 1.52
317 320 6.459710 GGGTGTTTGGTTCAGAGACTTTTTAG 60.460 42.308 0.00 0.00 0.00 1.85
318 321 6.095021 GGTGTTTGGTTCAGAGACTTTTTAGT 59.905 38.462 0.00 0.00 0.00 2.24
319 322 7.187480 GTGTTTGGTTCAGAGACTTTTTAGTC 58.813 38.462 0.00 0.00 39.00 2.59
320 323 6.317893 TGTTTGGTTCAGAGACTTTTTAGTCC 59.682 38.462 1.88 0.00 39.50 3.85
321 324 4.969484 TGGTTCAGAGACTTTTTAGTCCC 58.031 43.478 1.88 0.00 39.50 4.46
322 325 4.410883 TGGTTCAGAGACTTTTTAGTCCCA 59.589 41.667 1.88 0.00 39.50 4.37
323 326 4.998033 GGTTCAGAGACTTTTTAGTCCCAG 59.002 45.833 1.88 0.00 39.50 4.45
324 327 5.221661 GGTTCAGAGACTTTTTAGTCCCAGA 60.222 44.000 1.88 0.00 39.50 3.86
325 328 5.730296 TCAGAGACTTTTTAGTCCCAGAG 57.270 43.478 1.88 0.00 39.50 3.35
326 329 5.394738 TCAGAGACTTTTTAGTCCCAGAGA 58.605 41.667 1.88 0.00 39.50 3.10
327 330 5.244178 TCAGAGACTTTTTAGTCCCAGAGAC 59.756 44.000 1.88 0.00 46.71 3.36
339 342 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
340 343 3.838903 TCCCAGAGACTAGAAAAAGTCCC 59.161 47.826 0.00 0.00 45.86 4.46
341 344 3.841255 CCCAGAGACTAGAAAAAGTCCCT 59.159 47.826 0.00 0.00 45.86 4.20
342 345 5.024118 CCCAGAGACTAGAAAAAGTCCCTA 58.976 45.833 0.00 0.00 45.86 3.53
343 346 5.128008 CCCAGAGACTAGAAAAAGTCCCTAG 59.872 48.000 0.00 0.00 45.86 3.02
344 347 5.128008 CCAGAGACTAGAAAAAGTCCCTAGG 59.872 48.000 0.06 0.06 45.86 3.02
345 348 5.952947 CAGAGACTAGAAAAAGTCCCTAGGA 59.047 44.000 11.48 0.00 45.86 2.94
346 349 6.437793 CAGAGACTAGAAAAAGTCCCTAGGAA 59.562 42.308 11.48 0.00 45.86 3.36
347 350 6.438108 AGAGACTAGAAAAAGTCCCTAGGAAC 59.562 42.308 11.48 0.00 45.86 3.62
348 351 5.484644 AGACTAGAAAAAGTCCCTAGGAACC 59.515 44.000 11.48 0.00 45.86 3.62
349 352 5.160386 ACTAGAAAAAGTCCCTAGGAACCA 58.840 41.667 11.48 0.00 35.43 3.67
350 353 5.609708 ACTAGAAAAAGTCCCTAGGAACCAA 59.390 40.000 11.48 0.00 35.43 3.67
351 354 5.397553 AGAAAAAGTCCCTAGGAACCAAA 57.602 39.130 11.48 0.00 31.38 3.28
352 355 5.138276 AGAAAAAGTCCCTAGGAACCAAAC 58.862 41.667 11.48 0.00 31.38 2.93
353 356 2.853235 AAGTCCCTAGGAACCAAACG 57.147 50.000 11.48 0.00 31.38 3.60
354 357 0.981943 AGTCCCTAGGAACCAAACGG 59.018 55.000 11.48 0.00 31.38 4.44
355 358 0.035725 GTCCCTAGGAACCAAACGGG 60.036 60.000 11.48 0.00 44.81 5.28
356 359 0.178897 TCCCTAGGAACCAAACGGGA 60.179 55.000 11.48 0.00 41.15 5.14
357 360 0.252197 CCCTAGGAACCAAACGGGAG 59.748 60.000 11.48 0.00 41.15 4.30
358 361 0.252197 CCTAGGAACCAAACGGGAGG 59.748 60.000 1.05 0.00 41.15 4.30
359 362 0.252197 CTAGGAACCAAACGGGAGGG 59.748 60.000 0.00 0.00 41.15 4.30
360 363 0.178897 TAGGAACCAAACGGGAGGGA 60.179 55.000 0.00 0.00 41.15 4.20
361 364 1.303074 GGAACCAAACGGGAGGGAC 60.303 63.158 0.00 0.00 41.15 4.46
363 366 0.109913 GAACCAAACGGGAGGGACTT 59.890 55.000 0.00 0.00 41.55 3.01
364 367 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.000 0.00 0.00 41.55 2.66
365 368 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
366 369 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
367 370 1.611977 CCAAACGGGAGGGACTTTTTC 59.388 52.381 0.00 0.00 41.55 2.29
368 371 2.583143 CAAACGGGAGGGACTTTTTCT 58.417 47.619 0.00 0.00 41.55 2.52
369 372 3.497227 CCAAACGGGAGGGACTTTTTCTA 60.497 47.826 0.00 0.00 41.55 2.10
370 373 4.332828 CAAACGGGAGGGACTTTTTCTAT 58.667 43.478 0.00 0.00 41.55 1.98
371 374 5.493809 CAAACGGGAGGGACTTTTTCTATA 58.506 41.667 0.00 0.00 41.55 1.31
372 375 5.354842 AACGGGAGGGACTTTTTCTATAG 57.645 43.478 0.00 0.00 41.55 1.31
373 376 3.710165 ACGGGAGGGACTTTTTCTATAGG 59.290 47.826 0.00 0.00 41.55 2.57
374 377 3.071167 CGGGAGGGACTTTTTCTATAGGG 59.929 52.174 0.00 0.00 41.55 3.53
375 378 4.304659 GGGAGGGACTTTTTCTATAGGGA 58.695 47.826 0.00 0.00 41.55 4.20
376 379 4.102838 GGGAGGGACTTTTTCTATAGGGAC 59.897 50.000 0.00 0.00 41.55 4.46
377 380 4.969999 GGAGGGACTTTTTCTATAGGGACT 59.030 45.833 0.00 0.00 41.55 3.85
378 381 6.141790 GGAGGGACTTTTTCTATAGGGACTA 58.858 44.000 0.00 0.00 43.94 2.59
379 382 6.614496 GGAGGGACTTTTTCTATAGGGACTAA 59.386 42.308 0.00 0.00 43.06 2.24
380 383 7.126879 GGAGGGACTTTTTCTATAGGGACTAAA 59.873 40.741 0.00 0.00 43.06 1.85
381 384 8.458951 AGGGACTTTTTCTATAGGGACTAAAA 57.541 34.615 0.00 0.00 40.21 1.52
382 385 8.897692 AGGGACTTTTTCTATAGGGACTAAAAA 58.102 33.333 0.00 4.69 40.21 1.94
452 455 3.963428 GTCCTAGGACTTCTGAAGCAA 57.037 47.619 31.12 0.00 41.57 3.91
453 456 4.273148 GTCCTAGGACTTCTGAAGCAAA 57.727 45.455 31.12 0.00 41.57 3.68
454 457 3.997681 GTCCTAGGACTTCTGAAGCAAAC 59.002 47.826 31.12 3.26 41.57 2.93
455 458 3.646162 TCCTAGGACTTCTGAAGCAAACA 59.354 43.478 17.00 0.00 0.00 2.83
456 459 3.748568 CCTAGGACTTCTGAAGCAAACAC 59.251 47.826 17.00 2.13 0.00 3.32
457 460 2.576615 AGGACTTCTGAAGCAAACACC 58.423 47.619 17.00 10.59 0.00 4.16
458 461 2.092429 AGGACTTCTGAAGCAAACACCA 60.092 45.455 17.00 0.00 0.00 4.17
459 462 2.033424 GGACTTCTGAAGCAAACACCAC 59.967 50.000 17.00 0.00 0.00 4.16
460 463 1.670811 ACTTCTGAAGCAAACACCACG 59.329 47.619 17.00 0.00 0.00 4.94
461 464 1.670811 CTTCTGAAGCAAACACCACGT 59.329 47.619 4.20 0.00 0.00 4.49
462 465 1.013596 TCTGAAGCAAACACCACGTG 58.986 50.000 9.08 9.08 39.75 4.49
467 470 2.319136 AGCAAACACCACGTGTAAGA 57.681 45.000 15.65 0.00 46.79 2.10
543 546 1.448013 GGTTCCCACTACTCGCTGC 60.448 63.158 0.00 0.00 0.00 5.25
580 583 3.784763 ACCTCATCCATGACCAGAAGAAT 59.215 43.478 0.00 0.00 32.50 2.40
836 842 8.870116 ACATTTTACTAGCAAAGGGAAGAAAAT 58.130 29.630 5.06 0.00 0.00 1.82
848 854 2.131972 GAAGAAAATGCGGCGGTTTTT 58.868 42.857 9.78 11.04 0.00 1.94
1186 1216 2.678934 CGGTCGGTCCCAGGAGAA 60.679 66.667 0.00 0.00 0.00 2.87
1222 1252 1.022735 GAATCTAGTCGCCTCACCGA 58.977 55.000 0.00 0.00 34.40 4.69
1710 1757 5.207768 GCTGCGGAAATGTTGATAATACTG 58.792 41.667 0.00 0.00 0.00 2.74
1712 1759 4.211389 GCGGAAATGTTGATAATACTGCG 58.789 43.478 0.00 0.00 0.00 5.18
1714 1761 4.509970 CGGAAATGTTGATAATACTGCGGA 59.490 41.667 0.00 0.00 0.00 5.54
1715 1762 5.007234 CGGAAATGTTGATAATACTGCGGAA 59.993 40.000 0.00 0.00 0.00 4.30
1716 1763 6.457663 CGGAAATGTTGATAATACTGCGGAAA 60.458 38.462 0.00 0.00 0.00 3.13
1724 1793 9.301153 GTTGATAATACTGCGGAAATGAAAAAT 57.699 29.630 0.00 0.00 0.00 1.82
1777 1846 3.900446 GCAGATTTGCCAGTTTGCT 57.100 47.368 0.00 0.00 44.74 3.91
1798 1867 2.079925 GAACAGAACCCAGATGTGCTC 58.920 52.381 0.00 0.00 0.00 4.26
1831 1900 3.243636 TGAACTACGAGGAACACAAGTCC 60.244 47.826 0.00 0.00 0.00 3.85
1979 2048 8.049117 ACTTTCATGCTCCTGTGAATTATAGAA 58.951 33.333 0.00 0.00 34.60 2.10
1997 2066 0.523966 AACGCGAGAGGAGTCAGAAG 59.476 55.000 15.93 0.00 0.00 2.85
2007 2076 3.879892 GAGGAGTCAGAAGCAAACAAACT 59.120 43.478 0.00 0.00 0.00 2.66
2222 2291 3.134458 GAGATGCTTACTATGGTGGCAC 58.866 50.000 9.70 9.70 37.92 5.01
2512 2581 4.428209 AGATGAGATTGTGATGTGACGAC 58.572 43.478 0.00 0.00 0.00 4.34
2633 2702 8.125448 CAGGCTTGATAGATTTTTACTACTTGC 58.875 37.037 0.00 0.00 0.00 4.01
2821 2896 7.391148 TCAAATACTCCTATTTTTGAGTGCC 57.609 36.000 2.58 0.00 41.71 5.01
2822 2897 6.945435 TCAAATACTCCTATTTTTGAGTGCCA 59.055 34.615 2.58 0.00 41.71 4.92
2823 2898 7.450014 TCAAATACTCCTATTTTTGAGTGCCAA 59.550 33.333 2.58 0.00 41.71 4.52
2824 2899 7.961326 AATACTCCTATTTTTGAGTGCCAAT 57.039 32.000 2.58 0.00 41.71 3.16
2825 2900 9.474313 AAATACTCCTATTTTTGAGTGCCAATA 57.526 29.630 2.58 0.00 41.71 1.90
2826 2901 9.646522 AATACTCCTATTTTTGAGTGCCAATAT 57.353 29.630 2.58 0.00 41.71 1.28
2829 2904 9.646522 ACTCCTATTTTTGAGTGCCAATATATT 57.353 29.630 0.00 0.00 40.23 1.28
2831 2906 9.639563 TCCTATTTTTGAGTGCCAATATATTCA 57.360 29.630 0.00 0.00 34.23 2.57
2832 2907 9.903682 CCTATTTTTGAGTGCCAATATATTCAG 57.096 33.333 0.00 0.00 34.23 3.02
2840 2915 9.586435 TGAGTGCCAATATATTCAGTTATATCG 57.414 33.333 0.00 0.00 0.00 2.92
2841 2916 9.587772 GAGTGCCAATATATTCAGTTATATCGT 57.412 33.333 0.00 0.00 0.00 3.73
2842 2917 9.371136 AGTGCCAATATATTCAGTTATATCGTG 57.629 33.333 0.00 0.00 0.00 4.35
2843 2918 8.116753 GTGCCAATATATTCAGTTATATCGTGC 58.883 37.037 0.00 0.00 0.00 5.34
2844 2919 7.279981 TGCCAATATATTCAGTTATATCGTGCC 59.720 37.037 0.00 0.00 0.00 5.01
2845 2920 7.495934 GCCAATATATTCAGTTATATCGTGCCT 59.504 37.037 0.00 0.00 0.00 4.75
2846 2921 8.820933 CCAATATATTCAGTTATATCGTGCCTG 58.179 37.037 0.00 0.00 0.00 4.85
2847 2922 8.331022 CAATATATTCAGTTATATCGTGCCTGC 58.669 37.037 0.00 0.00 0.00 4.85
2848 2923 2.134201 TCAGTTATATCGTGCCTGCG 57.866 50.000 0.00 0.00 0.00 5.18
2849 2924 1.407618 TCAGTTATATCGTGCCTGCGT 59.592 47.619 0.00 0.00 0.00 5.24
2850 2925 2.159156 TCAGTTATATCGTGCCTGCGTT 60.159 45.455 0.00 0.00 0.00 4.84
2851 2926 2.033747 CAGTTATATCGTGCCTGCGTTG 60.034 50.000 0.00 0.00 0.00 4.10
2852 2927 0.934496 TTATATCGTGCCTGCGTTGC 59.066 50.000 0.00 0.00 0.00 4.17
2853 2928 0.104120 TATATCGTGCCTGCGTTGCT 59.896 50.000 0.00 0.00 0.00 3.91
2854 2929 1.154205 ATATCGTGCCTGCGTTGCTC 61.154 55.000 0.00 0.00 0.00 4.26
2855 2930 2.225791 TATCGTGCCTGCGTTGCTCT 62.226 55.000 0.00 0.00 0.00 4.09
2856 2931 3.349006 CGTGCCTGCGTTGCTCTT 61.349 61.111 0.00 0.00 0.00 2.85
2857 2932 2.558313 GTGCCTGCGTTGCTCTTC 59.442 61.111 0.00 0.00 0.00 2.87
2858 2933 1.963338 GTGCCTGCGTTGCTCTTCT 60.963 57.895 0.00 0.00 0.00 2.85
2859 2934 0.670546 GTGCCTGCGTTGCTCTTCTA 60.671 55.000 0.00 0.00 0.00 2.10
2860 2935 0.250234 TGCCTGCGTTGCTCTTCTAT 59.750 50.000 0.00 0.00 0.00 1.98
2861 2936 0.933796 GCCTGCGTTGCTCTTCTATC 59.066 55.000 0.00 0.00 0.00 2.08
2862 2937 1.740380 GCCTGCGTTGCTCTTCTATCA 60.740 52.381 0.00 0.00 0.00 2.15
2863 2938 2.621338 CCTGCGTTGCTCTTCTATCAA 58.379 47.619 0.00 0.00 0.00 2.57
2864 2939 3.002791 CCTGCGTTGCTCTTCTATCAAA 58.997 45.455 0.00 0.00 0.00 2.69
2865 2940 3.624861 CCTGCGTTGCTCTTCTATCAAAT 59.375 43.478 0.00 0.00 0.00 2.32
2866 2941 4.811024 CCTGCGTTGCTCTTCTATCAAATA 59.189 41.667 0.00 0.00 0.00 1.40
2867 2942 5.277058 CCTGCGTTGCTCTTCTATCAAATAC 60.277 44.000 0.00 0.00 0.00 1.89
2868 2943 5.419542 TGCGTTGCTCTTCTATCAAATACT 58.580 37.500 0.00 0.00 0.00 2.12
2869 2944 5.520288 TGCGTTGCTCTTCTATCAAATACTC 59.480 40.000 0.00 0.00 0.00 2.59
2870 2945 5.050702 GCGTTGCTCTTCTATCAAATACTCC 60.051 44.000 0.00 0.00 0.00 3.85
2871 2946 6.276847 CGTTGCTCTTCTATCAAATACTCCT 58.723 40.000 0.00 0.00 0.00 3.69
2872 2947 7.426410 CGTTGCTCTTCTATCAAATACTCCTA 58.574 38.462 0.00 0.00 0.00 2.94
2873 2948 8.085296 CGTTGCTCTTCTATCAAATACTCCTAT 58.915 37.037 0.00 0.00 0.00 2.57
2874 2949 9.771534 GTTGCTCTTCTATCAAATACTCCTATT 57.228 33.333 0.00 0.00 0.00 1.73
2925 3000 8.648698 TTGGTCATTAGAAAATCTGAAATCCA 57.351 30.769 0.00 0.00 0.00 3.41
2953 3028 5.295292 GCTGCTAATACAATCTTCTCTTGCA 59.705 40.000 0.00 0.00 0.00 4.08
2957 3032 7.772292 TGCTAATACAATCTTCTCTTGCATTCT 59.228 33.333 0.00 0.00 0.00 2.40
2987 3062 0.973632 TCTGCGTGGTGAGGTAACAT 59.026 50.000 0.00 0.00 41.41 2.71
2992 3067 2.864343 GCGTGGTGAGGTAACATGTATC 59.136 50.000 0.00 0.00 41.41 2.24
3038 3115 9.869667 ATTGTAGGTATTACATGTACTCTCTCT 57.130 33.333 4.68 2.03 41.72 3.10
3039 3116 9.696572 TTGTAGGTATTACATGTACTCTCTCTT 57.303 33.333 4.68 0.00 41.72 2.85
3040 3117 9.696572 TGTAGGTATTACATGTACTCTCTCTTT 57.303 33.333 4.68 0.00 37.35 2.52
3076 3153 2.757212 CGCATAACGGTAACCTGCA 58.243 52.632 5.48 0.00 38.44 4.41
3077 3154 1.080298 CGCATAACGGTAACCTGCAA 58.920 50.000 5.48 0.00 38.44 4.08
3078 3155 1.465387 CGCATAACGGTAACCTGCAAA 59.535 47.619 5.48 0.00 38.44 3.68
3079 3156 2.096819 CGCATAACGGTAACCTGCAAAT 59.903 45.455 5.48 0.00 38.44 2.32
3080 3157 3.426963 CGCATAACGGTAACCTGCAAATT 60.427 43.478 5.48 0.00 38.44 1.82
3081 3158 4.490743 GCATAACGGTAACCTGCAAATTT 58.509 39.130 0.00 0.00 33.13 1.82
3082 3159 4.926832 GCATAACGGTAACCTGCAAATTTT 59.073 37.500 0.00 0.00 33.13 1.82
3083 3160 5.061684 GCATAACGGTAACCTGCAAATTTTC 59.938 40.000 0.00 0.00 33.13 2.29
3084 3161 4.929819 AACGGTAACCTGCAAATTTTCT 57.070 36.364 0.00 0.00 0.00 2.52
3085 3162 4.499037 ACGGTAACCTGCAAATTTTCTC 57.501 40.909 0.00 0.00 0.00 2.87
3086 3163 3.254903 ACGGTAACCTGCAAATTTTCTCC 59.745 43.478 0.00 0.00 0.00 3.71
3087 3164 3.366985 CGGTAACCTGCAAATTTTCTCCC 60.367 47.826 0.00 0.00 0.00 4.30
3088 3165 3.056107 GGTAACCTGCAAATTTTCTCCCC 60.056 47.826 0.00 0.00 0.00 4.81
3089 3166 1.644509 ACCTGCAAATTTTCTCCCCC 58.355 50.000 0.00 0.00 0.00 5.40
3090 3167 1.132881 ACCTGCAAATTTTCTCCCCCA 60.133 47.619 0.00 0.00 0.00 4.96
3091 3168 2.190538 CCTGCAAATTTTCTCCCCCAT 58.809 47.619 0.00 0.00 0.00 4.00
3092 3169 2.169144 CCTGCAAATTTTCTCCCCCATC 59.831 50.000 0.00 0.00 0.00 3.51
3093 3170 2.833338 CTGCAAATTTTCTCCCCCATCA 59.167 45.455 0.00 0.00 0.00 3.07
3094 3171 3.246301 TGCAAATTTTCTCCCCCATCAA 58.754 40.909 0.00 0.00 0.00 2.57
3095 3172 3.007831 TGCAAATTTTCTCCCCCATCAAC 59.992 43.478 0.00 0.00 0.00 3.18
3096 3173 3.848726 CAAATTTTCTCCCCCATCAACG 58.151 45.455 0.00 0.00 0.00 4.10
3097 3174 2.143876 ATTTTCTCCCCCATCAACGG 57.856 50.000 0.00 0.00 0.00 4.44
3098 3175 1.068948 TTTTCTCCCCCATCAACGGA 58.931 50.000 0.00 0.00 0.00 4.69
3099 3176 1.295020 TTTCTCCCCCATCAACGGAT 58.705 50.000 0.00 0.00 0.00 4.18
3107 3184 2.016961 CATCAACGGATGCGGAAGG 58.983 57.895 12.44 0.00 44.03 3.46
3108 3185 0.461870 CATCAACGGATGCGGAAGGA 60.462 55.000 12.44 2.88 44.03 3.36
3110 3187 0.461870 TCAACGGATGCGGAAGGATG 60.462 55.000 12.44 0.29 44.47 3.51
3111 3188 1.819632 AACGGATGCGGAAGGATGC 60.820 57.895 12.44 0.00 44.47 3.91
3113 3190 2.192979 GGATGCGGAAGGATGCCA 59.807 61.111 0.00 0.00 44.47 4.92
3114 3191 1.228367 GGATGCGGAAGGATGCCAT 60.228 57.895 0.00 0.00 44.47 4.40
3115 3192 1.239968 GGATGCGGAAGGATGCCATC 61.240 60.000 0.00 0.00 44.47 3.51
3125 3202 2.321213 GATGCCATCCAACCGTAGC 58.679 57.895 0.00 0.00 0.00 3.58
3126 3203 1.152963 ATGCCATCCAACCGTAGCC 60.153 57.895 0.00 0.00 0.00 3.93
3127 3204 2.895372 GCCATCCAACCGTAGCCG 60.895 66.667 0.00 0.00 0.00 5.52
3128 3205 2.582436 CCATCCAACCGTAGCCGT 59.418 61.111 0.00 0.00 0.00 5.68
3129 3206 1.817881 CCATCCAACCGTAGCCGTA 59.182 57.895 0.00 0.00 0.00 4.02
3130 3207 0.391597 CCATCCAACCGTAGCCGTAT 59.608 55.000 0.00 0.00 0.00 3.06
3131 3208 1.614903 CCATCCAACCGTAGCCGTATA 59.385 52.381 0.00 0.00 0.00 1.47
3132 3209 2.232941 CCATCCAACCGTAGCCGTATAT 59.767 50.000 0.00 0.00 0.00 0.86
3133 3210 3.444742 CCATCCAACCGTAGCCGTATATA 59.555 47.826 0.00 0.00 0.00 0.86
3134 3211 4.098960 CCATCCAACCGTAGCCGTATATAT 59.901 45.833 0.00 0.00 0.00 0.86
3135 3212 5.394883 CCATCCAACCGTAGCCGTATATATT 60.395 44.000 0.00 0.00 0.00 1.28
3136 3213 5.726980 TCCAACCGTAGCCGTATATATTT 57.273 39.130 0.00 0.00 0.00 1.40
3137 3214 5.713025 TCCAACCGTAGCCGTATATATTTC 58.287 41.667 0.00 0.00 0.00 2.17
3138 3215 5.243507 TCCAACCGTAGCCGTATATATTTCA 59.756 40.000 0.00 0.00 0.00 2.69
3139 3216 5.927689 CCAACCGTAGCCGTATATATTTCAA 59.072 40.000 0.00 0.00 0.00 2.69
3140 3217 6.424509 CCAACCGTAGCCGTATATATTTCAAA 59.575 38.462 0.00 0.00 0.00 2.69
3141 3218 7.285788 CAACCGTAGCCGTATATATTTCAAAC 58.714 38.462 0.00 0.00 0.00 2.93
3142 3219 6.752168 ACCGTAGCCGTATATATTTCAAACT 58.248 36.000 0.00 0.00 0.00 2.66
3143 3220 6.865205 ACCGTAGCCGTATATATTTCAAACTC 59.135 38.462 0.00 0.00 0.00 3.01
3144 3221 6.309737 CCGTAGCCGTATATATTTCAAACTCC 59.690 42.308 0.00 0.00 0.00 3.85
3145 3222 7.088905 CGTAGCCGTATATATTTCAAACTCCT 58.911 38.462 0.00 0.00 0.00 3.69
3146 3223 7.272948 CGTAGCCGTATATATTTCAAACTCCTC 59.727 40.741 0.00 0.00 0.00 3.71
3147 3224 7.304497 AGCCGTATATATTTCAAACTCCTCT 57.696 36.000 0.00 0.00 0.00 3.69
3148 3225 7.736893 AGCCGTATATATTTCAAACTCCTCTT 58.263 34.615 0.00 0.00 0.00 2.85
3149 3226 8.211629 AGCCGTATATATTTCAAACTCCTCTTT 58.788 33.333 0.00 0.00 0.00 2.52
3150 3227 9.485206 GCCGTATATATTTCAAACTCCTCTTTA 57.515 33.333 0.00 0.00 0.00 1.85
3172 3249 9.838163 CTTTAATAACTTTTTAACAAACCACGC 57.162 29.630 0.00 0.00 0.00 5.34
3173 3250 6.831727 AATAACTTTTTAACAAACCACGCC 57.168 33.333 0.00 0.00 0.00 5.68
3174 3251 3.167921 ACTTTTTAACAAACCACGCCC 57.832 42.857 0.00 0.00 0.00 6.13
3175 3252 2.121009 CTTTTTAACAAACCACGCCCG 58.879 47.619 0.00 0.00 0.00 6.13
3176 3253 0.384669 TTTTAACAAACCACGCCCGG 59.615 50.000 0.00 0.00 0.00 5.73
3177 3254 0.465097 TTTAACAAACCACGCCCGGA 60.465 50.000 0.73 0.00 0.00 5.14
3178 3255 0.250814 TTAACAAACCACGCCCGGAT 60.251 50.000 0.73 0.00 0.00 4.18
3179 3256 0.250814 TAACAAACCACGCCCGGATT 60.251 50.000 0.73 0.00 0.00 3.01
3180 3257 1.110518 AACAAACCACGCCCGGATTT 61.111 50.000 0.73 0.00 0.00 2.17
3181 3258 1.211709 CAAACCACGCCCGGATTTC 59.788 57.895 0.73 0.00 0.00 2.17
3182 3259 2.329614 AAACCACGCCCGGATTTCG 61.330 57.895 0.73 3.13 38.88 3.46
3183 3260 3.540367 AACCACGCCCGGATTTCGT 62.540 57.895 0.73 3.87 37.11 3.85
3184 3261 2.169937 AACCACGCCCGGATTTCGTA 62.170 55.000 0.73 0.00 37.11 3.43
3185 3262 2.169146 CCACGCCCGGATTTCGTAC 61.169 63.158 0.73 0.00 37.11 3.67
3186 3263 1.446445 CACGCCCGGATTTCGTACA 60.446 57.895 0.73 0.00 37.11 2.90
3187 3264 1.015085 CACGCCCGGATTTCGTACAA 61.015 55.000 0.73 0.00 37.11 2.41
3188 3265 0.320596 ACGCCCGGATTTCGTACAAA 60.321 50.000 0.73 0.00 37.11 2.83
3189 3266 0.095762 CGCCCGGATTTCGTACAAAC 59.904 55.000 0.73 0.00 37.11 2.93
3190 3267 1.158434 GCCCGGATTTCGTACAAACA 58.842 50.000 0.73 0.00 37.11 2.83
3191 3268 1.135888 GCCCGGATTTCGTACAAACAC 60.136 52.381 0.73 0.00 37.11 3.32
3192 3269 1.127213 CCCGGATTTCGTACAAACACG 59.873 52.381 0.73 2.28 43.28 4.49
3203 3280 6.971527 TCGTACAAACACGATGGATTTAAT 57.028 33.333 0.00 0.00 45.45 1.40
3204 3281 7.367159 TCGTACAAACACGATGGATTTAATT 57.633 32.000 0.00 0.00 45.45 1.40
3205 3282 8.476657 TCGTACAAACACGATGGATTTAATTA 57.523 30.769 0.00 0.00 45.45 1.40
3206 3283 8.382130 TCGTACAAACACGATGGATTTAATTAC 58.618 33.333 0.00 0.00 45.45 1.89
3207 3284 8.169910 CGTACAAACACGATGGATTTAATTACA 58.830 33.333 0.00 0.00 44.69 2.41
3208 3285 9.997482 GTACAAACACGATGGATTTAATTACAT 57.003 29.630 0.00 0.00 0.00 2.29
3210 3287 9.921637 ACAAACACGATGGATTTAATTACATTT 57.078 25.926 0.00 0.00 0.00 2.32
3268 3345 5.397142 AAAACCGTCTCTAAACGTATCCT 57.603 39.130 0.00 0.00 41.01 3.24
3269 3346 6.515272 AAAACCGTCTCTAAACGTATCCTA 57.485 37.500 0.00 0.00 41.01 2.94
3270 3347 5.491635 AACCGTCTCTAAACGTATCCTAC 57.508 43.478 0.00 0.00 41.01 3.18
3289 3366 7.707624 TCCTACGGGATTTCGTACATATTAT 57.292 36.000 0.00 0.00 43.59 1.28
3290 3367 7.765307 TCCTACGGGATTTCGTACATATTATC 58.235 38.462 0.00 0.00 43.59 1.75
3291 3368 6.976925 CCTACGGGATTTCGTACATATTATCC 59.023 42.308 0.00 0.00 43.59 2.59
3292 3369 6.600882 ACGGGATTTCGTACATATTATCCT 57.399 37.500 0.00 0.00 41.98 3.24
3293 3370 7.707624 ACGGGATTTCGTACATATTATCCTA 57.292 36.000 0.00 0.00 41.98 2.94
3294 3371 8.125978 ACGGGATTTCGTACATATTATCCTAA 57.874 34.615 0.00 0.00 41.98 2.69
3295 3372 8.248945 ACGGGATTTCGTACATATTATCCTAAG 58.751 37.037 0.00 0.00 41.98 2.18
3296 3373 7.705325 CGGGATTTCGTACATATTATCCTAAGG 59.295 40.741 0.00 0.00 33.64 2.69
3297 3374 7.985752 GGGATTTCGTACATATTATCCTAAGGG 59.014 40.741 0.00 0.00 33.64 3.95
3298 3375 7.985752 GGATTTCGTACATATTATCCTAAGGGG 59.014 40.741 0.00 0.00 31.11 4.79
3310 3387 4.329638 TCCTAAGGGGATTTCATGCAAA 57.670 40.909 0.00 0.00 39.58 3.68
3311 3388 4.023291 TCCTAAGGGGATTTCATGCAAAC 58.977 43.478 0.00 0.00 39.58 2.93
3312 3389 3.181487 CCTAAGGGGATTTCATGCAAACG 60.181 47.826 0.00 0.00 37.23 3.60
3313 3390 1.185315 AGGGGATTTCATGCAAACGG 58.815 50.000 0.00 0.00 0.00 4.44
3314 3391 1.181786 GGGGATTTCATGCAAACGGA 58.818 50.000 0.00 0.00 0.00 4.69
3315 3392 1.756538 GGGGATTTCATGCAAACGGAT 59.243 47.619 0.00 0.00 0.00 4.18
3316 3393 2.168313 GGGGATTTCATGCAAACGGATT 59.832 45.455 0.00 0.00 0.00 3.01
3317 3394 3.369366 GGGGATTTCATGCAAACGGATTT 60.369 43.478 0.00 0.00 0.00 2.17
3318 3395 4.142049 GGGGATTTCATGCAAACGGATTTA 60.142 41.667 0.00 0.00 0.00 1.40
3319 3396 5.415221 GGGATTTCATGCAAACGGATTTAA 58.585 37.500 0.00 0.00 0.00 1.52
3320 3397 6.048509 GGGATTTCATGCAAACGGATTTAAT 58.951 36.000 0.00 0.00 0.00 1.40
3321 3398 6.538381 GGGATTTCATGCAAACGGATTTAATT 59.462 34.615 0.00 0.00 0.00 1.40
3322 3399 7.708752 GGGATTTCATGCAAACGGATTTAATTA 59.291 33.333 0.00 0.00 0.00 1.40
3323 3400 8.539674 GGATTTCATGCAAACGGATTTAATTAC 58.460 33.333 0.00 0.00 0.00 1.89
3324 3401 8.994429 ATTTCATGCAAACGGATTTAATTACA 57.006 26.923 0.00 0.00 0.00 2.41
3325 3402 8.994429 TTTCATGCAAACGGATTTAATTACAT 57.006 26.923 0.00 0.00 0.00 2.29
3326 3403 8.994429 TTCATGCAAACGGATTTAATTACATT 57.006 26.923 0.00 0.00 0.00 2.71
3327 3404 8.994429 TCATGCAAACGGATTTAATTACATTT 57.006 26.923 0.00 0.00 0.00 2.32
3328 3405 9.081997 TCATGCAAACGGATTTAATTACATTTC 57.918 29.630 0.00 0.00 0.00 2.17
3329 3406 8.867935 CATGCAAACGGATTTAATTACATTTCA 58.132 29.630 0.00 0.00 0.00 2.69
3330 3407 8.818141 TGCAAACGGATTTAATTACATTTCAA 57.182 26.923 0.00 0.00 0.00 2.69
3331 3408 9.261180 TGCAAACGGATTTAATTACATTTCAAA 57.739 25.926 0.00 0.00 0.00 2.69
3332 3409 9.523730 GCAAACGGATTTAATTACATTTCAAAC 57.476 29.630 0.00 0.00 0.00 2.93
3367 3444 8.859236 AAAAACTGTTCCTAAACCTATCCTAC 57.141 34.615 0.00 0.00 34.28 3.18
3368 3445 5.848833 ACTGTTCCTAAACCTATCCTACG 57.151 43.478 0.00 0.00 34.28 3.51
3369 3446 4.648307 ACTGTTCCTAAACCTATCCTACGG 59.352 45.833 0.00 0.00 34.28 4.02
3370 3447 3.962718 TGTTCCTAAACCTATCCTACGGG 59.037 47.826 0.00 0.00 34.28 5.28
3371 3448 3.249481 TCCTAAACCTATCCTACGGGG 57.751 52.381 0.00 0.00 0.00 5.73
3372 3449 7.361667 TGTTCCTAAACCTATCCTACGGGGA 62.362 48.000 1.97 1.97 40.55 4.81
3373 3450 8.588859 TGTTCCTAAACCTATCCTACGGGGAT 62.589 46.154 14.87 14.87 44.46 3.85
3374 3451 9.957718 TGTTCCTAAACCTATCCTACGGGGATT 62.958 44.444 15.53 3.44 42.08 3.01
3383 3460 4.145365 TCCTACGGGGATTTTGTACATG 57.855 45.455 0.00 0.00 39.58 3.21
3384 3461 3.520317 TCCTACGGGGATTTTGTACATGT 59.480 43.478 2.69 2.69 39.58 3.21
3385 3462 4.019141 TCCTACGGGGATTTTGTACATGTT 60.019 41.667 2.30 0.00 39.58 2.71
3386 3463 5.189342 TCCTACGGGGATTTTGTACATGTTA 59.811 40.000 2.30 0.00 39.58 2.41
3387 3464 6.059484 CCTACGGGGATTTTGTACATGTTAT 58.941 40.000 2.30 0.00 37.23 1.89
3388 3465 6.204108 CCTACGGGGATTTTGTACATGTTATC 59.796 42.308 2.30 0.23 37.23 1.75
3389 3466 4.573201 ACGGGGATTTTGTACATGTTATCG 59.427 41.667 2.30 0.00 0.00 2.92
3390 3467 4.573201 CGGGGATTTTGTACATGTTATCGT 59.427 41.667 2.30 0.00 0.00 3.73
3391 3468 5.754406 CGGGGATTTTGTACATGTTATCGTA 59.246 40.000 2.30 0.00 0.00 3.43
3392 3469 6.258287 CGGGGATTTTGTACATGTTATCGTAA 59.742 38.462 2.30 0.00 0.00 3.18
3393 3470 7.517734 CGGGGATTTTGTACATGTTATCGTAAG 60.518 40.741 2.30 0.00 0.00 2.34
3394 3471 7.255001 GGGGATTTTGTACATGTTATCGTAAGG 60.255 40.741 2.30 0.00 38.47 2.69
3395 3472 7.255001 GGGATTTTGTACATGTTATCGTAAGGG 60.255 40.741 2.30 0.00 38.47 3.95
3396 3473 6.988622 TTTTGTACATGTTATCGTAAGGGG 57.011 37.500 2.30 0.00 38.47 4.79
3397 3474 5.936187 TTGTACATGTTATCGTAAGGGGA 57.064 39.130 2.30 0.00 38.47 4.81
3398 3475 6.488769 TTGTACATGTTATCGTAAGGGGAT 57.511 37.500 2.30 0.00 38.47 3.85
3399 3476 6.488769 TGTACATGTTATCGTAAGGGGATT 57.511 37.500 2.30 0.00 38.47 3.01
3400 3477 6.891388 TGTACATGTTATCGTAAGGGGATTT 58.109 36.000 2.30 0.00 38.47 2.17
3401 3478 6.987992 TGTACATGTTATCGTAAGGGGATTTC 59.012 38.462 2.30 0.00 38.47 2.17
3402 3479 5.996644 ACATGTTATCGTAAGGGGATTTCA 58.003 37.500 0.00 0.00 38.47 2.69
3403 3480 6.601332 ACATGTTATCGTAAGGGGATTTCAT 58.399 36.000 0.00 0.00 38.47 2.57
3404 3481 6.486657 ACATGTTATCGTAAGGGGATTTCATG 59.513 38.462 0.00 0.00 38.37 3.07
3405 3482 4.819630 TGTTATCGTAAGGGGATTTCATGC 59.180 41.667 0.00 0.00 38.47 4.06
3406 3483 3.576078 ATCGTAAGGGGATTTCATGCA 57.424 42.857 0.00 0.00 38.47 3.96
3407 3484 3.358111 TCGTAAGGGGATTTCATGCAA 57.642 42.857 0.00 0.00 38.47 4.08
3408 3485 3.691575 TCGTAAGGGGATTTCATGCAAA 58.308 40.909 0.00 0.00 38.47 3.68
3409 3486 4.082845 TCGTAAGGGGATTTCATGCAAAA 58.917 39.130 0.00 0.00 38.47 2.44
3410 3487 4.709397 TCGTAAGGGGATTTCATGCAAAAT 59.291 37.500 0.00 0.00 38.47 1.82
3411 3488 4.805192 CGTAAGGGGATTTCATGCAAAATG 59.195 41.667 1.10 0.00 0.00 2.32
3412 3489 5.394005 CGTAAGGGGATTTCATGCAAAATGA 60.394 40.000 1.10 0.00 0.00 2.57
3413 3490 4.476628 AGGGGATTTCATGCAAAATGAC 57.523 40.909 1.10 0.00 0.00 3.06
3414 3491 3.119029 AGGGGATTTCATGCAAAATGACG 60.119 43.478 1.10 0.00 0.00 4.35
3415 3492 3.189285 GGGATTTCATGCAAAATGACGG 58.811 45.455 1.10 0.00 0.00 4.79
3416 3493 3.119173 GGGATTTCATGCAAAATGACGGA 60.119 43.478 1.10 0.00 0.00 4.69
3417 3494 4.441913 GGGATTTCATGCAAAATGACGGAT 60.442 41.667 1.10 0.00 0.00 4.18
3418 3495 5.111293 GGATTTCATGCAAAATGACGGATT 58.889 37.500 1.10 0.00 0.00 3.01
3419 3496 5.581874 GGATTTCATGCAAAATGACGGATTT 59.418 36.000 1.10 0.00 35.65 2.17
3420 3497 6.756074 GGATTTCATGCAAAATGACGGATTTA 59.244 34.615 1.10 0.00 32.76 1.40
3421 3498 7.277539 GGATTTCATGCAAAATGACGGATTTAA 59.722 33.333 1.10 0.00 32.76 1.52
3422 3499 8.721019 ATTTCATGCAAAATGACGGATTTAAT 57.279 26.923 0.00 0.00 32.76 1.40
3423 3500 8.545229 TTTCATGCAAAATGACGGATTTAATT 57.455 26.923 0.00 0.00 32.76 1.40
3424 3501 9.645059 TTTCATGCAAAATGACGGATTTAATTA 57.355 25.926 0.00 0.00 32.76 1.40
3425 3502 8.627487 TCATGCAAAATGACGGATTTAATTAC 57.373 30.769 0.00 0.00 32.76 1.89
3426 3503 8.246871 TCATGCAAAATGACGGATTTAATTACA 58.753 29.630 0.00 0.00 32.76 2.41
3427 3504 9.033481 CATGCAAAATGACGGATTTAATTACAT 57.967 29.630 0.00 0.00 32.76 2.29
3428 3505 8.994429 TGCAAAATGACGGATTTAATTACATT 57.006 26.923 0.00 0.00 32.76 2.71
3429 3506 9.429359 TGCAAAATGACGGATTTAATTACATTT 57.571 25.926 0.00 0.00 37.84 2.32
3454 3531 8.419076 TTGAACATTTAGAAAAGAAAACCTGC 57.581 30.769 0.00 0.00 0.00 4.85
3455 3532 6.983890 TGAACATTTAGAAAAGAAAACCTGCC 59.016 34.615 0.00 0.00 0.00 4.85
3456 3533 5.853936 ACATTTAGAAAAGAAAACCTGCCC 58.146 37.500 0.00 0.00 0.00 5.36
3457 3534 4.577834 TTTAGAAAAGAAAACCTGCCCG 57.422 40.909 0.00 0.00 0.00 6.13
3458 3535 2.067365 AGAAAAGAAAACCTGCCCGT 57.933 45.000 0.00 0.00 0.00 5.28
3459 3536 3.217681 AGAAAAGAAAACCTGCCCGTA 57.782 42.857 0.00 0.00 0.00 4.02
3460 3537 3.558033 AGAAAAGAAAACCTGCCCGTAA 58.442 40.909 0.00 0.00 0.00 3.18
3461 3538 3.955551 AGAAAAGAAAACCTGCCCGTAAA 59.044 39.130 0.00 0.00 0.00 2.01
3462 3539 3.720949 AAAGAAAACCTGCCCGTAAAC 57.279 42.857 0.00 0.00 0.00 2.01
3463 3540 1.612676 AGAAAACCTGCCCGTAAACC 58.387 50.000 0.00 0.00 0.00 3.27
3464 3541 1.144298 AGAAAACCTGCCCGTAAACCT 59.856 47.619 0.00 0.00 0.00 3.50
3465 3542 2.372837 AGAAAACCTGCCCGTAAACCTA 59.627 45.455 0.00 0.00 0.00 3.08
3466 3543 3.009805 AGAAAACCTGCCCGTAAACCTAT 59.990 43.478 0.00 0.00 0.00 2.57
3467 3544 2.704464 AACCTGCCCGTAAACCTATC 57.296 50.000 0.00 0.00 0.00 2.08
3468 3545 0.835276 ACCTGCCCGTAAACCTATCC 59.165 55.000 0.00 0.00 0.00 2.59
3469 3546 1.129058 CCTGCCCGTAAACCTATCCT 58.871 55.000 0.00 0.00 0.00 3.24
3470 3547 2.322658 CCTGCCCGTAAACCTATCCTA 58.677 52.381 0.00 0.00 0.00 2.94
3471 3548 2.904434 CCTGCCCGTAAACCTATCCTAT 59.096 50.000 0.00 0.00 0.00 2.57
3472 3549 3.306780 CCTGCCCGTAAACCTATCCTATG 60.307 52.174 0.00 0.00 0.00 2.23
3473 3550 2.635915 TGCCCGTAAACCTATCCTATGG 59.364 50.000 0.00 0.00 0.00 2.74
3474 3551 2.614734 GCCCGTAAACCTATCCTATGGC 60.615 54.545 0.00 0.00 0.00 4.40
3475 3552 2.353406 CCCGTAAACCTATCCTATGGCG 60.353 54.545 0.00 0.00 0.00 5.69
3476 3553 2.353406 CCGTAAACCTATCCTATGGCGG 60.353 54.545 0.00 0.00 0.00 6.13
3477 3554 2.696506 GTAAACCTATCCTATGGCGGC 58.303 52.381 0.00 0.00 0.00 6.53
3478 3555 0.034896 AAACCTATCCTATGGCGGCG 59.965 55.000 0.51 0.51 0.00 6.46
3479 3556 1.827399 AACCTATCCTATGGCGGCGG 61.827 60.000 9.78 0.00 0.00 6.13
3480 3557 2.125512 CTATCCTATGGCGGCGGC 60.126 66.667 27.76 27.76 38.90 6.53
3481 3558 3.989698 CTATCCTATGGCGGCGGCG 62.990 68.421 28.70 28.70 41.24 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.986479 GCAGGTGCTAAATTTTTGGACG 59.014 45.455 0.00 0.00 38.21 4.79
1 2 2.986479 CGCAGGTGCTAAATTTTTGGAC 59.014 45.455 0.00 6.67 39.32 4.02
2 3 2.625790 ACGCAGGTGCTAAATTTTTGGA 59.374 40.909 0.00 0.00 39.32 3.53
111 114 2.882137 TGGTTCTGTTTGGAAATCGACC 59.118 45.455 0.00 0.00 0.00 4.79
126 129 5.367945 TGAACTTCTAGGTGTTTGGTTCT 57.632 39.130 0.00 0.00 34.55 3.01
127 130 4.023963 GCTGAACTTCTAGGTGTTTGGTTC 60.024 45.833 0.00 0.00 34.20 3.62
128 131 3.883489 GCTGAACTTCTAGGTGTTTGGTT 59.117 43.478 0.00 0.00 0.00 3.67
129 132 3.118038 TGCTGAACTTCTAGGTGTTTGGT 60.118 43.478 0.00 0.00 0.00 3.67
130 133 3.251004 GTGCTGAACTTCTAGGTGTTTGG 59.749 47.826 0.00 0.00 0.00 3.28
132 135 3.118038 TGGTGCTGAACTTCTAGGTGTTT 60.118 43.478 0.00 0.00 0.00 2.83
134 137 2.047061 TGGTGCTGAACTTCTAGGTGT 58.953 47.619 0.00 0.00 0.00 4.16
135 138 2.839486 TGGTGCTGAACTTCTAGGTG 57.161 50.000 0.00 0.00 0.00 4.00
136 139 6.808321 TTATATGGTGCTGAACTTCTAGGT 57.192 37.500 0.00 0.00 0.00 3.08
137 140 8.682936 AATTTATATGGTGCTGAACTTCTAGG 57.317 34.615 0.00 0.00 0.00 3.02
140 143 8.903820 GGTTAATTTATATGGTGCTGAACTTCT 58.096 33.333 0.00 0.00 0.00 2.85
141 144 8.903820 AGGTTAATTTATATGGTGCTGAACTTC 58.096 33.333 0.00 0.00 0.00 3.01
142 145 8.823220 AGGTTAATTTATATGGTGCTGAACTT 57.177 30.769 0.00 0.00 0.00 2.66
143 146 8.823220 AAGGTTAATTTATATGGTGCTGAACT 57.177 30.769 0.00 0.00 0.00 3.01
144 147 8.682710 TGAAGGTTAATTTATATGGTGCTGAAC 58.317 33.333 0.00 0.00 0.00 3.18
145 148 8.682710 GTGAAGGTTAATTTATATGGTGCTGAA 58.317 33.333 0.00 0.00 0.00 3.02
146 149 7.831690 TGTGAAGGTTAATTTATATGGTGCTGA 59.168 33.333 0.00 0.00 0.00 4.26
147 150 7.995289 TGTGAAGGTTAATTTATATGGTGCTG 58.005 34.615 0.00 0.00 0.00 4.41
148 151 8.588290 TTGTGAAGGTTAATTTATATGGTGCT 57.412 30.769 0.00 0.00 0.00 4.40
149 152 8.682710 TCTTGTGAAGGTTAATTTATATGGTGC 58.317 33.333 0.00 0.00 0.00 5.01
151 154 9.975218 ACTCTTGTGAAGGTTAATTTATATGGT 57.025 29.630 0.00 0.00 0.00 3.55
158 161 9.936759 TTTTGAAACTCTTGTGAAGGTTAATTT 57.063 25.926 0.00 0.00 0.00 1.82
170 173 6.420604 CACGGCAATAATTTTGAAACTCTTGT 59.579 34.615 5.03 0.00 0.00 3.16
172 175 5.925969 CCACGGCAATAATTTTGAAACTCTT 59.074 36.000 5.03 0.00 0.00 2.85
191 194 3.302170 CGTTTCTTGAACAAAAACCACGG 59.698 43.478 13.67 0.00 38.18 4.94
197 200 3.131400 CCCCTCCGTTTCTTGAACAAAAA 59.869 43.478 0.00 0.00 38.18 1.94
201 204 1.071699 CTCCCCTCCGTTTCTTGAACA 59.928 52.381 0.00 0.00 38.18 3.18
209 212 5.767277 TTATTTTCTACTCCCCTCCGTTT 57.233 39.130 0.00 0.00 0.00 3.60
212 215 5.546621 TGATTATTTTCTACTCCCCTCCG 57.453 43.478 0.00 0.00 0.00 4.63
214 217 9.244292 ACTTTTTGATTATTTTCTACTCCCCTC 57.756 33.333 0.00 0.00 0.00 4.30
243 246 8.157476 ACCAAAAGAGTAGATTCTACACACATT 58.843 33.333 22.54 11.76 0.00 2.71
249 252 9.702253 AGAGATACCAAAAGAGTAGATTCTACA 57.298 33.333 22.54 2.60 0.00 2.74
279 282 2.046314 CACCCCCTAAGTGCCACG 60.046 66.667 0.00 0.00 0.00 4.94
291 294 1.143073 AGTCTCTGAACCAAACACCCC 59.857 52.381 0.00 0.00 0.00 4.95
292 295 2.640316 AGTCTCTGAACCAAACACCC 57.360 50.000 0.00 0.00 0.00 4.61
293 296 4.983671 AAAAGTCTCTGAACCAAACACC 57.016 40.909 0.00 0.00 0.00 4.16
296 299 6.238676 GGGACTAAAAAGTCTCTGAACCAAAC 60.239 42.308 5.59 0.00 36.42 2.93
297 300 5.826208 GGGACTAAAAAGTCTCTGAACCAAA 59.174 40.000 5.59 0.00 36.42 3.28
298 301 5.104277 TGGGACTAAAAAGTCTCTGAACCAA 60.104 40.000 6.93 0.00 39.88 3.67
299 302 4.410883 TGGGACTAAAAAGTCTCTGAACCA 59.589 41.667 6.93 1.83 39.88 3.67
301 304 5.855045 TCTGGGACTAAAAAGTCTCTGAAC 58.145 41.667 11.25 0.00 41.91 3.18
302 305 5.839063 TCTCTGGGACTAAAAAGTCTCTGAA 59.161 40.000 13.71 5.36 43.39 3.02
303 306 5.244178 GTCTCTGGGACTAAAAAGTCTCTGA 59.756 44.000 12.58 12.58 42.37 3.27
304 307 5.474825 GTCTCTGGGACTAAAAAGTCTCTG 58.525 45.833 0.00 6.48 39.88 3.35
305 308 5.731957 GTCTCTGGGACTAAAAAGTCTCT 57.268 43.478 0.00 0.00 39.88 3.10
317 320 4.322877 GGGACTTTTTCTAGTCTCTGGGAC 60.323 50.000 0.00 0.00 41.50 4.46
318 321 3.838903 GGGACTTTTTCTAGTCTCTGGGA 59.161 47.826 0.00 0.00 41.50 4.37
319 322 4.209307 GGGACTTTTTCTAGTCTCTGGG 57.791 50.000 0.00 0.00 41.50 4.45
323 326 6.351202 GGTTCCTAGGGACTTTTTCTAGTCTC 60.351 46.154 20.08 0.00 44.42 3.36
324 327 5.484644 GGTTCCTAGGGACTTTTTCTAGTCT 59.515 44.000 20.08 0.00 43.26 3.24
325 328 5.247792 TGGTTCCTAGGGACTTTTTCTAGTC 59.752 44.000 20.08 0.00 43.05 2.59
326 329 5.160386 TGGTTCCTAGGGACTTTTTCTAGT 58.840 41.667 20.08 0.00 41.75 2.57
327 330 5.757099 TGGTTCCTAGGGACTTTTTCTAG 57.243 43.478 20.08 0.00 41.75 2.43
328 331 6.301486 GTTTGGTTCCTAGGGACTTTTTCTA 58.699 40.000 20.08 0.00 41.75 2.10
329 332 5.138276 GTTTGGTTCCTAGGGACTTTTTCT 58.862 41.667 20.08 0.00 41.75 2.52
330 333 4.023450 CGTTTGGTTCCTAGGGACTTTTTC 60.023 45.833 20.08 3.31 41.75 2.29
331 334 3.887110 CGTTTGGTTCCTAGGGACTTTTT 59.113 43.478 20.08 0.00 41.75 1.94
332 335 3.483421 CGTTTGGTTCCTAGGGACTTTT 58.517 45.455 20.08 0.00 41.75 2.27
333 336 2.224695 CCGTTTGGTTCCTAGGGACTTT 60.225 50.000 20.08 0.00 41.75 2.66
334 337 1.350019 CCGTTTGGTTCCTAGGGACTT 59.650 52.381 20.08 0.00 41.75 3.01
335 338 0.981943 CCGTTTGGTTCCTAGGGACT 59.018 55.000 20.08 0.00 46.37 3.85
336 339 0.035725 CCCGTTTGGTTCCTAGGGAC 60.036 60.000 12.35 12.35 41.26 4.46
337 340 0.178897 TCCCGTTTGGTTCCTAGGGA 60.179 55.000 9.46 0.00 44.85 4.20
338 341 0.252197 CTCCCGTTTGGTTCCTAGGG 59.748 60.000 9.46 0.00 40.16 3.53
339 342 0.252197 CCTCCCGTTTGGTTCCTAGG 59.748 60.000 0.82 0.82 34.77 3.02
340 343 0.252197 CCCTCCCGTTTGGTTCCTAG 59.748 60.000 0.00 0.00 34.77 3.02
341 344 0.178897 TCCCTCCCGTTTGGTTCCTA 60.179 55.000 0.00 0.00 34.77 2.94
342 345 1.462627 TCCCTCCCGTTTGGTTCCT 60.463 57.895 0.00 0.00 34.77 3.36
343 346 1.303074 GTCCCTCCCGTTTGGTTCC 60.303 63.158 0.00 0.00 34.77 3.62
344 347 0.109913 AAGTCCCTCCCGTTTGGTTC 59.890 55.000 0.00 0.00 34.77 3.62
345 348 0.554305 AAAGTCCCTCCCGTTTGGTT 59.446 50.000 0.00 0.00 34.77 3.67
346 349 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
347 350 1.611977 GAAAAAGTCCCTCCCGTTTGG 59.388 52.381 0.00 0.00 0.00 3.28
348 351 2.583143 AGAAAAAGTCCCTCCCGTTTG 58.417 47.619 0.00 0.00 0.00 2.93
349 352 4.652679 ATAGAAAAAGTCCCTCCCGTTT 57.347 40.909 0.00 0.00 0.00 3.60
350 353 4.163649 CCTATAGAAAAAGTCCCTCCCGTT 59.836 45.833 0.00 0.00 0.00 4.44
351 354 3.710165 CCTATAGAAAAAGTCCCTCCCGT 59.290 47.826 0.00 0.00 0.00 5.28
352 355 3.071167 CCCTATAGAAAAAGTCCCTCCCG 59.929 52.174 0.00 0.00 0.00 5.14
353 356 4.102838 GTCCCTATAGAAAAAGTCCCTCCC 59.897 50.000 0.00 0.00 0.00 4.30
354 357 4.969999 AGTCCCTATAGAAAAAGTCCCTCC 59.030 45.833 0.00 0.00 0.00 4.30
355 358 7.672122 TTAGTCCCTATAGAAAAAGTCCCTC 57.328 40.000 0.00 0.00 0.00 4.30
356 359 8.458951 TTTTAGTCCCTATAGAAAAAGTCCCT 57.541 34.615 0.00 0.00 0.00 4.20
432 435 3.963428 TTGCTTCAGAAGTCCTAGGAC 57.037 47.619 31.29 31.29 44.86 3.85
433 436 3.646162 TGTTTGCTTCAGAAGTCCTAGGA 59.354 43.478 7.62 7.62 0.00 2.94
434 437 3.748568 GTGTTTGCTTCAGAAGTCCTAGG 59.251 47.826 11.94 0.82 0.00 3.02
435 438 3.748568 GGTGTTTGCTTCAGAAGTCCTAG 59.251 47.826 11.94 0.00 0.00 3.02
436 439 3.135712 TGGTGTTTGCTTCAGAAGTCCTA 59.864 43.478 11.94 0.00 0.00 2.94
437 440 2.092429 TGGTGTTTGCTTCAGAAGTCCT 60.092 45.455 11.94 0.00 0.00 3.85
438 441 2.033424 GTGGTGTTTGCTTCAGAAGTCC 59.967 50.000 11.94 6.03 0.00 3.85
439 442 2.286418 CGTGGTGTTTGCTTCAGAAGTC 60.286 50.000 11.94 5.03 0.00 3.01
440 443 1.670811 CGTGGTGTTTGCTTCAGAAGT 59.329 47.619 11.94 0.00 0.00 3.01
441 444 1.670811 ACGTGGTGTTTGCTTCAGAAG 59.329 47.619 5.72 5.72 0.00 2.85
442 445 1.400142 CACGTGGTGTTTGCTTCAGAA 59.600 47.619 7.95 0.00 0.00 3.02
443 446 1.013596 CACGTGGTGTTTGCTTCAGA 58.986 50.000 7.95 0.00 0.00 3.27
444 447 0.732571 ACACGTGGTGTTTGCTTCAG 59.267 50.000 21.57 0.00 45.08 3.02
445 448 2.025589 TACACGTGGTGTTTGCTTCA 57.974 45.000 21.57 0.00 45.08 3.02
446 449 2.610374 TCTTACACGTGGTGTTTGCTTC 59.390 45.455 21.57 0.00 45.08 3.86
447 450 2.634600 TCTTACACGTGGTGTTTGCTT 58.365 42.857 21.57 0.00 45.08 3.91
448 451 2.319136 TCTTACACGTGGTGTTTGCT 57.681 45.000 21.57 0.00 45.08 3.91
449 452 3.408288 TTTCTTACACGTGGTGTTTGC 57.592 42.857 21.57 0.00 45.08 3.68
450 453 5.224562 TCTTTTCTTACACGTGGTGTTTG 57.775 39.130 21.57 3.86 45.08 2.93
451 454 4.334481 CCTCTTTTCTTACACGTGGTGTTT 59.666 41.667 21.57 0.00 45.08 2.83
452 455 3.875134 CCTCTTTTCTTACACGTGGTGTT 59.125 43.478 21.57 0.32 45.08 3.32
454 457 3.247648 CACCTCTTTTCTTACACGTGGTG 59.752 47.826 21.57 9.61 39.75 4.17
455 458 3.118519 ACACCTCTTTTCTTACACGTGGT 60.119 43.478 21.57 8.16 0.00 4.16
456 459 3.463944 ACACCTCTTTTCTTACACGTGG 58.536 45.455 21.57 1.74 0.00 4.94
457 460 4.446719 GGTACACCTCTTTTCTTACACGTG 59.553 45.833 15.48 15.48 0.00 4.49
458 461 4.099881 TGGTACACCTCTTTTCTTACACGT 59.900 41.667 0.00 0.00 36.82 4.49
459 462 4.624015 TGGTACACCTCTTTTCTTACACG 58.376 43.478 0.00 0.00 36.82 4.49
509 512 2.125269 CCGGATGGGTCACCGTTC 60.125 66.667 0.00 0.00 46.53 3.95
580 583 4.671590 TCGGGGACTCGTGGCAGA 62.672 66.667 0.00 0.00 0.00 4.26
848 854 1.454276 CAAGCGACGCGAAGTAAAGAA 59.546 47.619 15.93 0.00 0.00 2.52
849 855 1.057636 CAAGCGACGCGAAGTAAAGA 58.942 50.000 15.93 0.00 0.00 2.52
850 856 0.516524 GCAAGCGACGCGAAGTAAAG 60.517 55.000 15.93 0.00 0.00 1.85
1125 1155 1.817099 CTTCCTGCCGATCTGCACC 60.817 63.158 7.83 0.00 36.04 5.01
1130 1160 3.225235 GGCTCTTCCTGCCGATCT 58.775 61.111 0.00 0.00 41.03 2.75
1148 1178 3.294493 GCCTGGCGCCAAGAAACA 61.294 61.111 32.09 5.20 0.00 2.83
1222 1252 6.639563 AGCGGAAAATTAAATTTACCTGCAT 58.360 32.000 9.80 0.00 38.59 3.96
1325 1367 3.244318 GGAGAACAGGTTAAGTCCGGAAA 60.244 47.826 5.23 0.00 0.00 3.13
1327 1369 1.897802 GGAGAACAGGTTAAGTCCGGA 59.102 52.381 0.00 0.00 0.00 5.14
1330 1377 1.723220 GCGGAGAACAGGTTAAGTCC 58.277 55.000 0.00 0.00 0.00 3.85
1710 1757 3.059257 ACCGCAAAATTTTTCATTTCCGC 60.059 39.130 0.00 0.00 0.00 5.54
1712 1759 5.416862 ACACCGCAAAATTTTTCATTTCC 57.583 34.783 0.00 0.00 0.00 3.13
1714 1761 6.676237 AGAACACCGCAAAATTTTTCATTT 57.324 29.167 0.00 0.00 0.00 2.32
1715 1762 6.676237 AAGAACACCGCAAAATTTTTCATT 57.324 29.167 0.00 0.00 0.00 2.57
1716 1763 7.778470 TTAAGAACACCGCAAAATTTTTCAT 57.222 28.000 0.00 0.00 0.00 2.57
1777 1846 1.421268 AGCACATCTGGGTTCTGTTCA 59.579 47.619 0.00 0.00 0.00 3.18
1798 1867 3.430218 CCTCGTAGTTCACTTGCAAGAAG 59.570 47.826 32.50 22.46 0.00 2.85
1831 1900 1.306148 CATGGAGGCTGTAGCACATG 58.694 55.000 15.70 15.70 44.36 3.21
1979 2048 1.928706 GCTTCTGACTCCTCTCGCGT 61.929 60.000 5.77 0.00 0.00 6.01
2007 2076 8.047310 GGAGGATCTCTTGGAACTTAAAACATA 58.953 37.037 0.00 0.00 33.73 2.29
2059 2128 4.227538 CAAGTTACGCTATATGGAGGACG 58.772 47.826 0.00 0.00 0.00 4.79
2222 2291 9.875675 CTGAACTTCTTTATCTGAAAAGACAAG 57.124 33.333 11.78 10.66 43.39 3.16
2512 2581 0.249322 ACGCGATCCCATTTAGACCG 60.249 55.000 15.93 0.00 0.00 4.79
2771 2846 0.104120 AGCAACGCAGGCACGATATA 59.896 50.000 6.95 0.00 36.70 0.86
2772 2847 1.153369 AGCAACGCAGGCACGATAT 60.153 52.632 6.95 0.00 36.70 1.63
2814 2889 9.586435 CGATATAACTGAATATATTGGCACTCA 57.414 33.333 1.78 0.00 30.44 3.41
2815 2890 9.587772 ACGATATAACTGAATATATTGGCACTC 57.412 33.333 1.78 0.00 35.35 3.51
2816 2891 9.371136 CACGATATAACTGAATATATTGGCACT 57.629 33.333 1.78 0.00 35.35 4.40
2817 2892 8.116753 GCACGATATAACTGAATATATTGGCAC 58.883 37.037 1.78 0.00 35.35 5.01
2818 2893 7.279981 GGCACGATATAACTGAATATATTGGCA 59.720 37.037 1.78 0.00 35.35 4.92
2819 2894 7.495934 AGGCACGATATAACTGAATATATTGGC 59.504 37.037 1.78 0.00 35.35 4.52
2820 2895 8.820933 CAGGCACGATATAACTGAATATATTGG 58.179 37.037 1.78 0.00 35.35 3.16
2821 2896 8.331022 GCAGGCACGATATAACTGAATATATTG 58.669 37.037 1.78 0.00 36.39 1.90
2822 2897 7.222805 CGCAGGCACGATATAACTGAATATATT 59.777 37.037 0.00 0.00 30.44 1.28
2823 2898 6.697455 CGCAGGCACGATATAACTGAATATAT 59.303 38.462 0.00 0.00 32.45 0.86
2824 2899 6.033966 CGCAGGCACGATATAACTGAATATA 58.966 40.000 0.00 0.00 34.06 0.86
2825 2900 4.864806 CGCAGGCACGATATAACTGAATAT 59.135 41.667 0.00 0.00 34.06 1.28
2826 2901 4.234574 CGCAGGCACGATATAACTGAATA 58.765 43.478 0.00 0.00 34.06 1.75
2827 2902 3.059884 CGCAGGCACGATATAACTGAAT 58.940 45.455 0.00 0.00 34.06 2.57
2828 2903 2.159156 ACGCAGGCACGATATAACTGAA 60.159 45.455 6.95 0.00 36.70 3.02
2829 2904 1.407618 ACGCAGGCACGATATAACTGA 59.592 47.619 6.95 0.00 36.70 3.41
2830 2905 1.852942 ACGCAGGCACGATATAACTG 58.147 50.000 6.95 0.00 36.70 3.16
2831 2906 2.201732 CAACGCAGGCACGATATAACT 58.798 47.619 6.95 0.00 36.70 2.24
2832 2907 1.332904 GCAACGCAGGCACGATATAAC 60.333 52.381 6.95 0.00 36.70 1.89
2833 2908 0.934496 GCAACGCAGGCACGATATAA 59.066 50.000 6.95 0.00 36.70 0.98
2834 2909 0.104120 AGCAACGCAGGCACGATATA 59.896 50.000 6.95 0.00 36.70 0.86
2835 2910 1.153369 AGCAACGCAGGCACGATAT 60.153 52.632 6.95 0.00 36.70 1.63
2836 2911 1.809619 GAGCAACGCAGGCACGATA 60.810 57.895 6.95 0.00 36.70 2.92
2837 2912 3.121030 GAGCAACGCAGGCACGAT 61.121 61.111 6.95 0.00 36.70 3.73
2838 2913 3.807631 AAGAGCAACGCAGGCACGA 62.808 57.895 6.95 0.00 36.70 4.35
2839 2914 3.300667 GAAGAGCAACGCAGGCACG 62.301 63.158 0.00 0.00 39.50 5.34
2840 2915 0.670546 TAGAAGAGCAACGCAGGCAC 60.671 55.000 0.00 0.00 0.00 5.01
2841 2916 0.250234 ATAGAAGAGCAACGCAGGCA 59.750 50.000 0.00 0.00 0.00 4.75
2842 2917 0.933796 GATAGAAGAGCAACGCAGGC 59.066 55.000 0.00 0.00 0.00 4.85
2843 2918 2.299993 TGATAGAAGAGCAACGCAGG 57.700 50.000 0.00 0.00 0.00 4.85
2844 2919 4.871993 ATTTGATAGAAGAGCAACGCAG 57.128 40.909 0.00 0.00 31.80 5.18
2845 2920 5.419542 AGTATTTGATAGAAGAGCAACGCA 58.580 37.500 0.00 0.00 31.80 5.24
2846 2921 5.050702 GGAGTATTTGATAGAAGAGCAACGC 60.051 44.000 0.00 0.00 31.80 4.84
2847 2922 6.276847 AGGAGTATTTGATAGAAGAGCAACG 58.723 40.000 0.00 0.00 31.80 4.10
2848 2923 9.771534 AATAGGAGTATTTGATAGAAGAGCAAC 57.228 33.333 0.00 0.00 31.80 4.17
2860 2935 8.581578 GGAACAAACCAAAATAGGAGTATTTGA 58.418 33.333 0.00 0.00 38.60 2.69
2861 2936 8.585018 AGGAACAAACCAAAATAGGAGTATTTG 58.415 33.333 0.00 0.00 38.60 2.32
2862 2937 8.721133 AGGAACAAACCAAAATAGGAGTATTT 57.279 30.769 0.00 0.00 40.04 1.40
2863 2938 8.170730 AGAGGAACAAACCAAAATAGGAGTATT 58.829 33.333 0.00 0.00 0.00 1.89
2864 2939 7.699878 AGAGGAACAAACCAAAATAGGAGTAT 58.300 34.615 0.00 0.00 0.00 2.12
2865 2940 7.086685 AGAGGAACAAACCAAAATAGGAGTA 57.913 36.000 0.00 0.00 0.00 2.59
2866 2941 5.953571 AGAGGAACAAACCAAAATAGGAGT 58.046 37.500 0.00 0.00 0.00 3.85
2867 2942 6.265422 ACAAGAGGAACAAACCAAAATAGGAG 59.735 38.462 0.00 0.00 0.00 3.69
2868 2943 6.133356 ACAAGAGGAACAAACCAAAATAGGA 58.867 36.000 0.00 0.00 0.00 2.94
2869 2944 6.405278 ACAAGAGGAACAAACCAAAATAGG 57.595 37.500 0.00 0.00 0.00 2.57
2870 2945 8.166422 ACTACAAGAGGAACAAACCAAAATAG 57.834 34.615 0.00 0.00 0.00 1.73
2871 2946 9.280174 CTACTACAAGAGGAACAAACCAAAATA 57.720 33.333 0.00 0.00 0.00 1.40
2872 2947 7.778382 ACTACTACAAGAGGAACAAACCAAAAT 59.222 33.333 0.00 0.00 0.00 1.82
2873 2948 7.114095 ACTACTACAAGAGGAACAAACCAAAA 58.886 34.615 0.00 0.00 0.00 2.44
2874 2949 6.655930 ACTACTACAAGAGGAACAAACCAAA 58.344 36.000 0.00 0.00 0.00 3.28
2875 2950 6.243216 ACTACTACAAGAGGAACAAACCAA 57.757 37.500 0.00 0.00 0.00 3.67
2876 2951 5.881923 ACTACTACAAGAGGAACAAACCA 57.118 39.130 0.00 0.00 0.00 3.67
2953 3028 1.679680 CGCAGATGGGAATGCAAGAAT 59.320 47.619 0.00 0.00 42.68 2.40
2957 3032 1.314534 CCACGCAGATGGGAATGCAA 61.315 55.000 3.67 0.00 42.68 4.08
3041 3118 8.495949 CCGTTATGCGTCATCTTATATTTCTTT 58.504 33.333 0.00 0.00 39.32 2.52
3042 3119 7.656137 ACCGTTATGCGTCATCTTATATTTCTT 59.344 33.333 0.00 0.00 39.32 2.52
3043 3120 7.152645 ACCGTTATGCGTCATCTTATATTTCT 58.847 34.615 0.00 0.00 39.32 2.52
3044 3121 7.347508 ACCGTTATGCGTCATCTTATATTTC 57.652 36.000 0.00 0.00 39.32 2.17
3045 3122 8.706035 GTTACCGTTATGCGTCATCTTATATTT 58.294 33.333 0.00 0.00 39.32 1.40
3046 3123 7.330208 GGTTACCGTTATGCGTCATCTTATATT 59.670 37.037 0.00 0.00 39.32 1.28
3047 3124 6.810182 GGTTACCGTTATGCGTCATCTTATAT 59.190 38.462 0.00 0.00 39.32 0.86
3048 3125 6.016024 AGGTTACCGTTATGCGTCATCTTATA 60.016 38.462 0.00 0.00 39.32 0.98
3049 3126 4.986659 GGTTACCGTTATGCGTCATCTTAT 59.013 41.667 0.00 0.00 39.32 1.73
3050 3127 4.098349 AGGTTACCGTTATGCGTCATCTTA 59.902 41.667 0.00 0.00 39.32 2.10
3051 3128 3.118884 AGGTTACCGTTATGCGTCATCTT 60.119 43.478 0.00 0.00 39.32 2.40
3052 3129 2.429610 AGGTTACCGTTATGCGTCATCT 59.570 45.455 0.00 0.00 39.32 2.90
3053 3130 2.538449 CAGGTTACCGTTATGCGTCATC 59.462 50.000 0.00 0.00 39.32 2.92
3054 3131 2.546778 CAGGTTACCGTTATGCGTCAT 58.453 47.619 0.00 0.00 39.32 3.06
3055 3132 1.999048 CAGGTTACCGTTATGCGTCA 58.001 50.000 0.00 0.00 39.32 4.35
3056 3133 0.648958 GCAGGTTACCGTTATGCGTC 59.351 55.000 0.00 0.00 39.32 5.19
3057 3134 0.037139 TGCAGGTTACCGTTATGCGT 60.037 50.000 8.47 0.00 39.74 5.24
3058 3135 1.080298 TTGCAGGTTACCGTTATGCG 58.920 50.000 8.47 0.00 39.74 4.73
3059 3136 3.775661 ATTTGCAGGTTACCGTTATGC 57.224 42.857 6.42 6.42 37.40 3.14
3060 3137 6.386654 AGAAAATTTGCAGGTTACCGTTATG 58.613 36.000 0.00 0.00 0.00 1.90
3061 3138 6.349860 GGAGAAAATTTGCAGGTTACCGTTAT 60.350 38.462 0.00 0.00 0.00 1.89
3062 3139 5.048573 GGAGAAAATTTGCAGGTTACCGTTA 60.049 40.000 0.00 0.00 0.00 3.18
3063 3140 4.261867 GGAGAAAATTTGCAGGTTACCGTT 60.262 41.667 0.00 0.00 0.00 4.44
3064 3141 3.254903 GGAGAAAATTTGCAGGTTACCGT 59.745 43.478 0.00 0.00 0.00 4.83
3065 3142 3.366985 GGGAGAAAATTTGCAGGTTACCG 60.367 47.826 0.00 0.00 0.00 4.02
3066 3143 3.056107 GGGGAGAAAATTTGCAGGTTACC 60.056 47.826 0.00 0.00 0.00 2.85
3067 3144 3.056107 GGGGGAGAAAATTTGCAGGTTAC 60.056 47.826 0.00 0.00 0.00 2.50
3068 3145 3.169908 GGGGGAGAAAATTTGCAGGTTA 58.830 45.455 0.00 0.00 0.00 2.85
3069 3146 1.977854 GGGGGAGAAAATTTGCAGGTT 59.022 47.619 0.00 0.00 0.00 3.50
3070 3147 1.132881 TGGGGGAGAAAATTTGCAGGT 60.133 47.619 0.00 0.00 0.00 4.00
3071 3148 1.643310 TGGGGGAGAAAATTTGCAGG 58.357 50.000 0.00 0.00 0.00 4.85
3072 3149 2.833338 TGATGGGGGAGAAAATTTGCAG 59.167 45.455 0.00 0.00 0.00 4.41
3073 3150 2.899975 TGATGGGGGAGAAAATTTGCA 58.100 42.857 0.00 0.00 0.00 4.08
3074 3151 3.599343 GTTGATGGGGGAGAAAATTTGC 58.401 45.455 0.00 0.00 0.00 3.68
3075 3152 3.368323 CCGTTGATGGGGGAGAAAATTTG 60.368 47.826 0.00 0.00 0.00 2.32
3076 3153 2.831526 CCGTTGATGGGGGAGAAAATTT 59.168 45.455 0.00 0.00 0.00 1.82
3077 3154 2.042433 TCCGTTGATGGGGGAGAAAATT 59.958 45.455 0.00 0.00 0.00 1.82
3078 3155 1.638589 TCCGTTGATGGGGGAGAAAAT 59.361 47.619 0.00 0.00 0.00 1.82
3079 3156 1.068948 TCCGTTGATGGGGGAGAAAA 58.931 50.000 0.00 0.00 0.00 2.29
3080 3157 1.064758 CATCCGTTGATGGGGGAGAAA 60.065 52.381 0.00 0.00 43.90 2.52
3081 3158 0.546122 CATCCGTTGATGGGGGAGAA 59.454 55.000 0.00 0.00 43.90 2.87
3082 3159 2.220953 CATCCGTTGATGGGGGAGA 58.779 57.895 0.00 0.00 43.90 3.71
3083 3160 4.885426 CATCCGTTGATGGGGGAG 57.115 61.111 0.00 0.00 43.90 4.30
3090 3167 0.469917 ATCCTTCCGCATCCGTTGAT 59.530 50.000 0.00 0.00 0.00 2.57
3091 3168 0.461870 CATCCTTCCGCATCCGTTGA 60.462 55.000 0.00 0.00 0.00 3.18
3092 3169 2.016961 CATCCTTCCGCATCCGTTG 58.983 57.895 0.00 0.00 0.00 4.10
3093 3170 1.819632 GCATCCTTCCGCATCCGTT 60.820 57.895 0.00 0.00 0.00 4.44
3094 3171 2.203070 GCATCCTTCCGCATCCGT 60.203 61.111 0.00 0.00 0.00 4.69
3095 3172 2.974698 GGCATCCTTCCGCATCCG 60.975 66.667 0.00 0.00 0.00 4.18
3096 3173 1.228367 ATGGCATCCTTCCGCATCC 60.228 57.895 0.00 0.00 0.00 3.51
3097 3174 1.239968 GGATGGCATCCTTCCGCATC 61.240 60.000 34.15 8.84 46.19 3.91
3098 3175 1.228367 GGATGGCATCCTTCCGCAT 60.228 57.895 34.15 0.00 46.19 4.73
3099 3176 2.192979 GGATGGCATCCTTCCGCA 59.807 61.111 34.15 0.00 46.19 5.69
3107 3184 1.166531 GGCTACGGTTGGATGGCATC 61.167 60.000 19.23 19.23 0.00 3.91
3108 3185 1.152963 GGCTACGGTTGGATGGCAT 60.153 57.895 0.00 0.00 0.00 4.40
3109 3186 2.270850 GGCTACGGTTGGATGGCA 59.729 61.111 0.00 0.00 0.00 4.92
3110 3187 2.300850 TACGGCTACGGTTGGATGGC 62.301 60.000 0.00 0.00 46.48 4.40
3111 3188 0.391597 ATACGGCTACGGTTGGATGG 59.608 55.000 0.00 0.00 46.48 3.51
3112 3189 3.587797 ATATACGGCTACGGTTGGATG 57.412 47.619 0.00 0.00 46.48 3.51
3113 3190 5.927281 AATATATACGGCTACGGTTGGAT 57.073 39.130 0.00 0.00 46.48 3.41
3114 3191 5.243507 TGAAATATATACGGCTACGGTTGGA 59.756 40.000 0.00 0.00 46.48 3.53
3115 3192 5.472148 TGAAATATATACGGCTACGGTTGG 58.528 41.667 0.00 0.00 46.48 3.77
3116 3193 7.170320 AGTTTGAAATATATACGGCTACGGTTG 59.830 37.037 0.00 0.00 46.48 3.77
3117 3194 7.212274 AGTTTGAAATATATACGGCTACGGTT 58.788 34.615 0.00 0.00 46.48 4.44
3118 3195 6.752168 AGTTTGAAATATATACGGCTACGGT 58.248 36.000 0.00 0.00 46.48 4.83
3119 3196 6.309737 GGAGTTTGAAATATATACGGCTACGG 59.690 42.308 0.00 0.00 46.48 4.02
3121 3198 8.305317 AGAGGAGTTTGAAATATATACGGCTAC 58.695 37.037 0.00 0.00 0.00 3.58
3122 3199 8.418597 AGAGGAGTTTGAAATATATACGGCTA 57.581 34.615 0.00 0.00 0.00 3.93
3123 3200 7.304497 AGAGGAGTTTGAAATATATACGGCT 57.696 36.000 0.00 0.00 0.00 5.52
3124 3201 7.964604 AAGAGGAGTTTGAAATATATACGGC 57.035 36.000 0.00 0.00 0.00 5.68
3146 3223 9.838163 GCGTGGTTTGTTAAAAAGTTATTAAAG 57.162 29.630 0.00 0.00 0.00 1.85
3147 3224 8.815189 GGCGTGGTTTGTTAAAAAGTTATTAAA 58.185 29.630 0.00 0.00 0.00 1.52
3148 3225 7.437565 GGGCGTGGTTTGTTAAAAAGTTATTAA 59.562 33.333 0.00 0.00 0.00 1.40
3149 3226 6.922407 GGGCGTGGTTTGTTAAAAAGTTATTA 59.078 34.615 0.00 0.00 0.00 0.98
3150 3227 5.754406 GGGCGTGGTTTGTTAAAAAGTTATT 59.246 36.000 0.00 0.00 0.00 1.40
3151 3228 5.291178 GGGCGTGGTTTGTTAAAAAGTTAT 58.709 37.500 0.00 0.00 0.00 1.89
3152 3229 4.680702 GGGCGTGGTTTGTTAAAAAGTTA 58.319 39.130 0.00 0.00 0.00 2.24
3153 3230 3.523547 GGGCGTGGTTTGTTAAAAAGTT 58.476 40.909 0.00 0.00 0.00 2.66
3154 3231 2.479901 CGGGCGTGGTTTGTTAAAAAGT 60.480 45.455 0.00 0.00 0.00 2.66
3155 3232 2.121009 CGGGCGTGGTTTGTTAAAAAG 58.879 47.619 0.00 0.00 0.00 2.27
3156 3233 1.202382 CCGGGCGTGGTTTGTTAAAAA 60.202 47.619 0.00 0.00 0.00 1.94
3157 3234 0.384669 CCGGGCGTGGTTTGTTAAAA 59.615 50.000 0.00 0.00 0.00 1.52
3158 3235 0.465097 TCCGGGCGTGGTTTGTTAAA 60.465 50.000 0.00 0.00 0.00 1.52
3159 3236 0.250814 ATCCGGGCGTGGTTTGTTAA 60.251 50.000 0.00 0.00 0.00 2.01
3160 3237 0.250814 AATCCGGGCGTGGTTTGTTA 60.251 50.000 0.00 0.00 0.00 2.41
3161 3238 1.110518 AAATCCGGGCGTGGTTTGTT 61.111 50.000 0.00 0.00 0.00 2.83
3162 3239 1.520600 GAAATCCGGGCGTGGTTTGT 61.521 55.000 0.00 0.00 0.00 2.83
3163 3240 1.211709 GAAATCCGGGCGTGGTTTG 59.788 57.895 0.00 0.00 0.00 2.93
3164 3241 2.329614 CGAAATCCGGGCGTGGTTT 61.330 57.895 0.00 0.00 33.91 3.27
3165 3242 2.169937 TACGAAATCCGGGCGTGGTT 62.170 55.000 18.11 0.00 43.93 3.67
3166 3243 2.648143 TACGAAATCCGGGCGTGGT 61.648 57.895 18.11 7.88 43.93 4.16
3167 3244 2.169146 GTACGAAATCCGGGCGTGG 61.169 63.158 18.11 2.75 43.93 4.94
3168 3245 1.015085 TTGTACGAAATCCGGGCGTG 61.015 55.000 18.11 2.29 43.93 5.34
3169 3246 0.320596 TTTGTACGAAATCCGGGCGT 60.321 50.000 0.00 9.66 43.93 5.68
3170 3247 0.095762 GTTTGTACGAAATCCGGGCG 59.904 55.000 0.00 3.29 43.93 6.13
3171 3248 1.135888 GTGTTTGTACGAAATCCGGGC 60.136 52.381 0.00 0.00 43.93 6.13
3172 3249 1.127213 CGTGTTTGTACGAAATCCGGG 59.873 52.381 0.00 0.00 46.46 5.73
3173 3250 2.497304 CGTGTTTGTACGAAATCCGG 57.503 50.000 0.00 0.00 46.46 5.14
3181 3258 8.169910 TGTAATTAAATCCATCGTGTTTGTACG 58.830 33.333 0.00 0.00 44.98 3.67
3182 3259 9.997482 ATGTAATTAAATCCATCGTGTTTGTAC 57.003 29.630 0.00 0.00 0.00 2.90
3184 3261 9.921637 AAATGTAATTAAATCCATCGTGTTTGT 57.078 25.926 0.00 0.00 33.67 2.83
3245 3322 5.787380 AGGATACGTTTAGAGACGGTTTTT 58.213 37.500 0.00 0.00 46.77 1.94
3246 3323 5.397142 AGGATACGTTTAGAGACGGTTTT 57.603 39.130 0.00 0.00 46.77 2.43
3247 3324 5.884771 GTAGGATACGTTTAGAGACGGTTT 58.115 41.667 0.00 0.00 46.77 3.27
3248 3325 5.491635 GTAGGATACGTTTAGAGACGGTT 57.508 43.478 0.00 0.00 46.77 4.44
3267 3344 7.769220 AGGATAATATGTACGAAATCCCGTAG 58.231 38.462 0.00 0.00 44.40 3.51
3268 3345 7.707624 AGGATAATATGTACGAAATCCCGTA 57.292 36.000 0.00 0.00 43.20 4.02
3269 3346 6.600882 AGGATAATATGTACGAAATCCCGT 57.399 37.500 0.00 0.00 45.54 5.28
3270 3347 7.705325 CCTTAGGATAATATGTACGAAATCCCG 59.295 40.741 0.00 0.00 34.65 5.14
3271 3348 7.985752 CCCTTAGGATAATATGTACGAAATCCC 59.014 40.741 0.00 0.00 34.65 3.85
3272 3349 7.985752 CCCCTTAGGATAATATGTACGAAATCC 59.014 40.741 0.00 0.00 38.24 3.01
3273 3350 8.755977 TCCCCTTAGGATAATATGTACGAAATC 58.244 37.037 0.00 0.00 40.93 2.17
3274 3351 8.674925 TCCCCTTAGGATAATATGTACGAAAT 57.325 34.615 0.00 0.00 40.93 2.17
3290 3367 3.181487 CGTTTGCATGAAATCCCCTTAGG 60.181 47.826 0.00 0.00 0.00 2.69
3291 3368 3.181487 CCGTTTGCATGAAATCCCCTTAG 60.181 47.826 0.00 0.00 0.00 2.18
3292 3369 2.757868 CCGTTTGCATGAAATCCCCTTA 59.242 45.455 0.00 0.00 0.00 2.69
3293 3370 1.550072 CCGTTTGCATGAAATCCCCTT 59.450 47.619 0.00 0.00 0.00 3.95
3294 3371 1.185315 CCGTTTGCATGAAATCCCCT 58.815 50.000 0.00 0.00 0.00 4.79
3295 3372 1.181786 TCCGTTTGCATGAAATCCCC 58.818 50.000 0.00 0.00 0.00 4.81
3296 3373 3.525268 AATCCGTTTGCATGAAATCCC 57.475 42.857 0.00 0.00 0.00 3.85
3297 3374 7.538303 AATTAAATCCGTTTGCATGAAATCC 57.462 32.000 0.00 0.00 0.00 3.01
3298 3375 9.081997 TGTAATTAAATCCGTTTGCATGAAATC 57.918 29.630 0.00 0.00 0.00 2.17
3299 3376 8.994429 TGTAATTAAATCCGTTTGCATGAAAT 57.006 26.923 0.00 0.00 0.00 2.17
3300 3377 8.994429 ATGTAATTAAATCCGTTTGCATGAAA 57.006 26.923 0.00 0.00 0.00 2.69
3301 3378 8.994429 AATGTAATTAAATCCGTTTGCATGAA 57.006 26.923 0.00 0.00 32.46 2.57
3302 3379 8.994429 AAATGTAATTAAATCCGTTTGCATGA 57.006 26.923 0.00 0.00 33.67 3.07
3303 3380 8.867935 TGAAATGTAATTAAATCCGTTTGCATG 58.132 29.630 0.00 0.00 33.67 4.06
3304 3381 8.994429 TGAAATGTAATTAAATCCGTTTGCAT 57.006 26.923 0.00 0.00 33.67 3.96
3305 3382 8.818141 TTGAAATGTAATTAAATCCGTTTGCA 57.182 26.923 0.00 0.00 33.67 4.08
3306 3383 9.523730 GTTTGAAATGTAATTAAATCCGTTTGC 57.476 29.630 0.00 0.00 33.67 3.68
3342 3419 7.605309 CGTAGGATAGGTTTAGGAACAGTTTTT 59.395 37.037 0.00 0.00 37.51 1.94
3343 3420 7.101700 CGTAGGATAGGTTTAGGAACAGTTTT 58.898 38.462 0.00 0.00 37.51 2.43
3344 3421 6.637657 CGTAGGATAGGTTTAGGAACAGTTT 58.362 40.000 0.00 0.00 37.51 2.66
3345 3422 6.218108 CGTAGGATAGGTTTAGGAACAGTT 57.782 41.667 0.00 0.00 37.51 3.16
3346 3423 5.848833 CGTAGGATAGGTTTAGGAACAGT 57.151 43.478 0.00 0.00 37.51 3.55
3364 3441 6.073980 CGATAACATGTACAAAATCCCCGTAG 60.074 42.308 0.00 0.00 0.00 3.51
3365 3442 5.754406 CGATAACATGTACAAAATCCCCGTA 59.246 40.000 0.00 0.00 0.00 4.02
3366 3443 4.573201 CGATAACATGTACAAAATCCCCGT 59.427 41.667 0.00 0.00 0.00 5.28
3367 3444 4.573201 ACGATAACATGTACAAAATCCCCG 59.427 41.667 0.00 1.62 0.00 5.73
3368 3445 7.255001 CCTTACGATAACATGTACAAAATCCCC 60.255 40.741 0.00 0.00 0.00 4.81
3369 3446 7.255001 CCCTTACGATAACATGTACAAAATCCC 60.255 40.741 0.00 0.00 0.00 3.85
3370 3447 7.255001 CCCCTTACGATAACATGTACAAAATCC 60.255 40.741 0.00 0.00 0.00 3.01
3371 3448 7.496591 TCCCCTTACGATAACATGTACAAAATC 59.503 37.037 0.00 0.09 0.00 2.17
3372 3449 7.340256 TCCCCTTACGATAACATGTACAAAAT 58.660 34.615 0.00 0.00 0.00 1.82
3373 3450 6.709281 TCCCCTTACGATAACATGTACAAAA 58.291 36.000 0.00 0.00 0.00 2.44
3374 3451 6.297080 TCCCCTTACGATAACATGTACAAA 57.703 37.500 0.00 0.00 0.00 2.83
3375 3452 5.936187 TCCCCTTACGATAACATGTACAA 57.064 39.130 0.00 0.00 0.00 2.41
3376 3453 6.488769 AATCCCCTTACGATAACATGTACA 57.511 37.500 0.00 0.00 0.00 2.90
3377 3454 6.987992 TGAAATCCCCTTACGATAACATGTAC 59.012 38.462 0.00 0.00 0.00 2.90
3378 3455 7.127012 TGAAATCCCCTTACGATAACATGTA 57.873 36.000 0.00 0.00 0.00 2.29
3379 3456 5.996644 TGAAATCCCCTTACGATAACATGT 58.003 37.500 0.00 0.00 0.00 3.21
3380 3457 6.568462 GCATGAAATCCCCTTACGATAACATG 60.568 42.308 0.00 0.00 36.97 3.21
3381 3458 5.473504 GCATGAAATCCCCTTACGATAACAT 59.526 40.000 0.00 0.00 0.00 2.71
3382 3459 4.819630 GCATGAAATCCCCTTACGATAACA 59.180 41.667 0.00 0.00 0.00 2.41
3383 3460 4.819630 TGCATGAAATCCCCTTACGATAAC 59.180 41.667 0.00 0.00 0.00 1.89
3384 3461 5.042463 TGCATGAAATCCCCTTACGATAA 57.958 39.130 0.00 0.00 0.00 1.75
3385 3462 4.698201 TGCATGAAATCCCCTTACGATA 57.302 40.909 0.00 0.00 0.00 2.92
3386 3463 3.576078 TGCATGAAATCCCCTTACGAT 57.424 42.857 0.00 0.00 0.00 3.73
3387 3464 3.358111 TTGCATGAAATCCCCTTACGA 57.642 42.857 0.00 0.00 0.00 3.43
3388 3465 4.448537 TTTTGCATGAAATCCCCTTACG 57.551 40.909 0.00 0.00 0.00 3.18
3389 3466 5.812127 GTCATTTTGCATGAAATCCCCTTAC 59.188 40.000 0.00 0.00 0.00 2.34
3390 3467 5.394005 CGTCATTTTGCATGAAATCCCCTTA 60.394 40.000 0.00 0.00 0.00 2.69
3391 3468 4.621274 CGTCATTTTGCATGAAATCCCCTT 60.621 41.667 0.00 0.00 0.00 3.95
3392 3469 3.119029 CGTCATTTTGCATGAAATCCCCT 60.119 43.478 0.00 0.00 0.00 4.79
3393 3470 3.189285 CGTCATTTTGCATGAAATCCCC 58.811 45.455 0.00 0.00 0.00 4.81
3394 3471 3.119173 TCCGTCATTTTGCATGAAATCCC 60.119 43.478 0.00 0.00 0.00 3.85
3395 3472 4.108699 TCCGTCATTTTGCATGAAATCC 57.891 40.909 0.00 0.00 0.00 3.01
3396 3473 6.651755 AAATCCGTCATTTTGCATGAAATC 57.348 33.333 0.00 0.00 29.60 2.17
3397 3474 8.721019 ATTAAATCCGTCATTTTGCATGAAAT 57.279 26.923 0.00 0.00 36.09 2.17
3398 3475 8.545229 AATTAAATCCGTCATTTTGCATGAAA 57.455 26.923 0.00 0.00 36.09 2.69
3399 3476 9.081997 GTAATTAAATCCGTCATTTTGCATGAA 57.918 29.630 0.00 0.00 36.09 2.57
3400 3477 8.246871 TGTAATTAAATCCGTCATTTTGCATGA 58.753 29.630 0.00 0.00 36.09 3.07
3401 3478 8.404889 TGTAATTAAATCCGTCATTTTGCATG 57.595 30.769 0.00 0.00 36.09 4.06
3402 3479 9.598517 AATGTAATTAAATCCGTCATTTTGCAT 57.401 25.926 0.00 0.00 36.09 3.96
3403 3480 8.994429 AATGTAATTAAATCCGTCATTTTGCA 57.006 26.923 0.00 0.00 36.09 4.08
3428 3505 8.878769 GCAGGTTTTCTTTTCTAAATGTTCAAA 58.121 29.630 0.00 0.00 0.00 2.69
3429 3506 7.494298 GGCAGGTTTTCTTTTCTAAATGTTCAA 59.506 33.333 0.00 0.00 0.00 2.69
3430 3507 6.983890 GGCAGGTTTTCTTTTCTAAATGTTCA 59.016 34.615 0.00 0.00 0.00 3.18
3431 3508 6.423905 GGGCAGGTTTTCTTTTCTAAATGTTC 59.576 38.462 0.00 0.00 0.00 3.18
3432 3509 6.288294 GGGCAGGTTTTCTTTTCTAAATGTT 58.712 36.000 0.00 0.00 0.00 2.71
3433 3510 5.508994 CGGGCAGGTTTTCTTTTCTAAATGT 60.509 40.000 0.00 0.00 0.00 2.71
3434 3511 4.923281 CGGGCAGGTTTTCTTTTCTAAATG 59.077 41.667 0.00 0.00 0.00 2.32
3435 3512 4.587262 ACGGGCAGGTTTTCTTTTCTAAAT 59.413 37.500 0.00 0.00 0.00 1.40
3436 3513 3.955551 ACGGGCAGGTTTTCTTTTCTAAA 59.044 39.130 0.00 0.00 0.00 1.85
3437 3514 3.558033 ACGGGCAGGTTTTCTTTTCTAA 58.442 40.909 0.00 0.00 0.00 2.10
3438 3515 3.217681 ACGGGCAGGTTTTCTTTTCTA 57.782 42.857 0.00 0.00 0.00 2.10
3439 3516 2.067365 ACGGGCAGGTTTTCTTTTCT 57.933 45.000 0.00 0.00 0.00 2.52
3440 3517 3.994204 TTACGGGCAGGTTTTCTTTTC 57.006 42.857 0.00 0.00 0.00 2.29
3441 3518 3.181473 GGTTTACGGGCAGGTTTTCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
3442 3519 2.363038 GGTTTACGGGCAGGTTTTCTTT 59.637 45.455 0.00 0.00 0.00 2.52
3443 3520 1.958579 GGTTTACGGGCAGGTTTTCTT 59.041 47.619 0.00 0.00 0.00 2.52
3444 3521 1.144298 AGGTTTACGGGCAGGTTTTCT 59.856 47.619 0.00 0.00 0.00 2.52
3445 3522 1.612676 AGGTTTACGGGCAGGTTTTC 58.387 50.000 0.00 0.00 0.00 2.29
3446 3523 2.955342 TAGGTTTACGGGCAGGTTTT 57.045 45.000 0.00 0.00 0.00 2.43
3447 3524 2.356432 GGATAGGTTTACGGGCAGGTTT 60.356 50.000 0.00 0.00 0.00 3.27
3448 3525 1.211212 GGATAGGTTTACGGGCAGGTT 59.789 52.381 0.00 0.00 0.00 3.50
3449 3526 0.835276 GGATAGGTTTACGGGCAGGT 59.165 55.000 0.00 0.00 0.00 4.00
3450 3527 1.129058 AGGATAGGTTTACGGGCAGG 58.871 55.000 0.00 0.00 0.00 4.85
3451 3528 3.306780 CCATAGGATAGGTTTACGGGCAG 60.307 52.174 0.00 0.00 0.00 4.85
3452 3529 2.635915 CCATAGGATAGGTTTACGGGCA 59.364 50.000 0.00 0.00 0.00 5.36
3453 3530 2.614734 GCCATAGGATAGGTTTACGGGC 60.615 54.545 0.00 0.00 0.00 6.13
3454 3531 2.353406 CGCCATAGGATAGGTTTACGGG 60.353 54.545 0.00 0.00 0.00 5.28
3455 3532 2.353406 CCGCCATAGGATAGGTTTACGG 60.353 54.545 0.00 0.00 0.00 4.02
3456 3533 2.929592 GCCGCCATAGGATAGGTTTACG 60.930 54.545 0.00 0.00 0.00 3.18
3457 3534 2.696506 GCCGCCATAGGATAGGTTTAC 58.303 52.381 0.00 0.00 0.00 2.01
3458 3535 1.274167 CGCCGCCATAGGATAGGTTTA 59.726 52.381 0.00 0.00 0.00 2.01
3459 3536 0.034896 CGCCGCCATAGGATAGGTTT 59.965 55.000 0.00 0.00 0.00 3.27
3460 3537 1.671742 CGCCGCCATAGGATAGGTT 59.328 57.895 0.00 0.00 0.00 3.50
3461 3538 2.283529 CCGCCGCCATAGGATAGGT 61.284 63.158 0.00 0.00 0.00 3.08
3462 3539 2.579201 CCGCCGCCATAGGATAGG 59.421 66.667 0.00 0.00 0.00 2.57
3463 3540 2.125512 GCCGCCGCCATAGGATAG 60.126 66.667 0.00 0.00 0.00 2.08
3464 3541 4.063967 CGCCGCCGCCATAGGATA 62.064 66.667 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.