Multiple sequence alignment - TraesCS4D01G175700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G175700 chr4D 100.000 3754 0 0 1 3754 304689168 304692921 0.000000e+00 6933.0
1 TraesCS4D01G175700 chr4A 92.513 3259 132 35 543 3754 174157972 174154779 0.000000e+00 4564.0
2 TraesCS4D01G175700 chr4A 90.040 502 34 9 3 495 174158613 174158119 1.470000e-178 636.0
3 TraesCS4D01G175700 chr4B 92.476 3057 101 37 543 3548 380652973 380655951 0.000000e+00 4252.0
4 TraesCS4D01G175700 chr4B 92.986 499 24 6 1 491 380651004 380651499 0.000000e+00 717.0
5 TraesCS4D01G175700 chr4B 98.086 209 4 0 3546 3754 380656064 380656272 7.660000e-97 364.0
6 TraesCS4D01G175700 chr2D 85.627 327 40 6 1311 1632 54487752 54487428 1.670000e-88 337.0
7 TraesCS4D01G175700 chr2D 90.604 149 14 0 1024 1172 54487979 54487831 8.220000e-47 198.0
8 TraesCS4D01G175700 chr2D 90.345 145 14 0 1024 1168 54317524 54317668 1.380000e-44 191.0
9 TraesCS4D01G175700 chr2D 83.217 143 20 4 1024 1164 175331280 175331420 1.090000e-25 128.0
10 TraesCS4D01G175700 chr2D 86.022 93 10 1 2145 2237 54318594 54318683 3.090000e-16 97.1
11 TraesCS4D01G175700 chr2B 85.627 327 40 6 1311 1632 85177685 85177361 1.670000e-88 337.0
12 TraesCS4D01G175700 chr2B 91.724 145 12 0 1024 1168 85177910 85177766 6.360000e-48 202.0
13 TraesCS4D01G175700 chr2B 89.655 145 15 0 1024 1168 85074018 85074162 6.400000e-43 185.0
14 TraesCS4D01G175700 chr2A 85.802 324 39 6 1311 1629 54882607 54882928 1.670000e-88 337.0
15 TraesCS4D01G175700 chr2A 85.093 322 45 3 1311 1629 54955253 54954932 3.620000e-85 326.0
16 TraesCS4D01G175700 chr2A 89.933 149 15 0 1024 1172 54882382 54882530 3.830000e-45 193.0
17 TraesCS4D01G175700 chr2A 89.933 149 15 0 1024 1172 54955478 54955330 3.830000e-45 193.0
18 TraesCS4D01G175700 chr6A 79.699 266 33 17 1321 1568 77099659 77099397 4.990000e-39 172.0
19 TraesCS4D01G175700 chr6B 79.608 255 31 17 1332 1568 134664358 134664107 3.000000e-36 163.0
20 TraesCS4D01G175700 chr1D 95.238 42 2 0 2150 2191 359665073 359665032 2.420000e-07 67.6
21 TraesCS4D01G175700 chr1A 95.238 42 2 0 2150 2191 459187451 459187410 2.420000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G175700 chr4D 304689168 304692921 3753 False 6933.000000 6933 100.0000 1 3754 1 chr4D.!!$F1 3753
1 TraesCS4D01G175700 chr4A 174154779 174158613 3834 True 2600.000000 4564 91.2765 3 3754 2 chr4A.!!$R1 3751
2 TraesCS4D01G175700 chr4B 380651004 380656272 5268 False 1777.666667 4252 94.5160 1 3754 3 chr4B.!!$F1 3753
3 TraesCS4D01G175700 chr2D 54487428 54487979 551 True 267.500000 337 88.1155 1024 1632 2 chr2D.!!$R1 608
4 TraesCS4D01G175700 chr2B 85177361 85177910 549 True 269.500000 337 88.6755 1024 1632 2 chr2B.!!$R1 608
5 TraesCS4D01G175700 chr2A 54882382 54882928 546 False 265.000000 337 87.8675 1024 1629 2 chr2A.!!$F1 605
6 TraesCS4D01G175700 chr2A 54954932 54955478 546 True 259.500000 326 87.5130 1024 1629 2 chr2A.!!$R1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 482 0.108207 CTCCCTGACTCATGCATCCC 59.892 60.0 0.0 0.0 0.00 3.85 F
747 2262 0.685097 TCCCGAAACCACAGAGAAGG 59.315 55.0 0.0 0.0 0.00 3.46 F
2501 4101 0.527565 AATTCCATGTGAACAGCGGC 59.472 50.0 0.0 0.0 35.31 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 3468 0.894835 ACCCGATTCCATTTTGGCAC 59.105 50.000 0.00 0.0 37.47 5.01 R
2505 4105 0.311790 CCAAGCTGCGACATGTTGTT 59.688 50.000 14.64 0.0 0.00 2.83 R
3390 5000 3.002348 CGGGTTCCATATTCTTCTTTCGC 59.998 47.826 0.00 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.984474 ACATATAGTTCAAACGTATGTCCCTG 59.016 38.462 15.21 0.00 39.29 4.45
52 53 2.635915 AGTTCAAACGTATGTCCCTGGA 59.364 45.455 0.00 0.00 0.00 3.86
95 96 3.203040 AGCCTGTTTAGCATAATGGGTCT 59.797 43.478 0.00 0.00 0.00 3.85
139 140 6.609533 AGGTAATATGCACGAGAATAGTACG 58.390 40.000 10.90 0.00 37.58 3.67
142 143 7.754027 GGTAATATGCACGAGAATAGTACGAAT 59.246 37.037 10.90 0.00 37.58 3.34
147 148 6.909909 TGCACGAGAATAGTACGAATCATAT 58.090 36.000 0.00 0.00 0.00 1.78
231 233 3.649023 TCTTTTGCCTGACTAACCCTACA 59.351 43.478 0.00 0.00 0.00 2.74
263 265 9.109393 GTCCAATTTCTTGTCTGTAGCATATTA 57.891 33.333 0.00 0.00 0.00 0.98
353 356 6.206048 TCACTGTAGTGTCGAACTAAATCTGA 59.794 38.462 11.44 5.72 43.08 3.27
384 387 1.871039 AGACCCACGAATTTGTCAACG 59.129 47.619 0.00 0.00 0.00 4.10
414 417 4.519906 ACCTTCCTTTTTCTTCTGTCCA 57.480 40.909 0.00 0.00 0.00 4.02
454 464 8.770010 AAGTTGCCTATATGTTAGTCTCTACT 57.230 34.615 0.00 0.00 39.91 2.57
472 482 0.108207 CTCCCTGACTCATGCATCCC 59.892 60.000 0.00 0.00 0.00 3.85
474 484 1.062198 TCCCTGACTCATGCATCCCTA 60.062 52.381 0.00 0.00 0.00 3.53
476 486 1.347050 CCTGACTCATGCATCCCTAGG 59.653 57.143 0.06 0.06 0.00 3.02
477 487 0.761187 TGACTCATGCATCCCTAGGC 59.239 55.000 2.05 0.00 0.00 3.93
481 491 1.952296 CTCATGCATCCCTAGGCAAAC 59.048 52.381 2.05 0.00 46.90 2.93
504 531 6.133356 ACACCCAAGGAAAGAAGAATAACAA 58.867 36.000 0.00 0.00 0.00 2.83
507 534 6.159293 CCCAAGGAAAGAAGAATAACAAAGC 58.841 40.000 0.00 0.00 0.00 3.51
513 540 7.040132 AGGAAAGAAGAATAACAAAGCTTCCTG 60.040 37.037 0.00 0.00 37.94 3.86
514 541 5.635417 AGAAGAATAACAAAGCTTCCTGC 57.365 39.130 0.00 0.00 37.94 4.85
528 555 3.929610 GCTTCCTGCTGATTATACGATCC 59.070 47.826 0.00 0.00 38.95 3.36
529 556 3.850122 TCCTGCTGATTATACGATCCG 57.150 47.619 0.00 0.00 0.00 4.18
530 557 3.418047 TCCTGCTGATTATACGATCCGA 58.582 45.455 0.00 0.00 0.00 4.55
531 558 3.190744 TCCTGCTGATTATACGATCCGAC 59.809 47.826 0.00 0.00 0.00 4.79
532 559 3.191581 CCTGCTGATTATACGATCCGACT 59.808 47.826 0.00 0.00 0.00 4.18
535 562 6.404844 CCTGCTGATTATACGATCCGACTATT 60.405 42.308 0.00 0.00 0.00 1.73
537 564 7.375834 TGCTGATTATACGATCCGACTATTTT 58.624 34.615 0.00 0.00 0.00 1.82
538 565 7.870954 TGCTGATTATACGATCCGACTATTTTT 59.129 33.333 0.00 0.00 0.00 1.94
572 2063 1.005512 CGTTGTGTCGGGTGGATCA 60.006 57.895 0.00 0.00 0.00 2.92
709 2217 5.498700 CGGACGTGAGAAATAACGAATCAAG 60.499 44.000 0.00 0.00 0.00 3.02
723 2231 4.000325 CGAATCAAGGATAACCACACACA 59.000 43.478 0.00 0.00 38.94 3.72
725 2233 3.134574 TCAAGGATAACCACACACACC 57.865 47.619 0.00 0.00 38.94 4.16
747 2262 0.685097 TCCCGAAACCACAGAGAAGG 59.315 55.000 0.00 0.00 0.00 3.46
761 2276 3.296737 AAGGCCTCCCTCCCTCCT 61.297 66.667 5.23 0.00 41.90 3.69
762 2277 3.339951 AAGGCCTCCCTCCCTCCTC 62.340 68.421 5.23 0.00 41.90 3.71
786 2309 2.672651 CCATGGCCAAGCGTCACA 60.673 61.111 10.96 0.00 0.00 3.58
979 2527 2.568623 AGGGTTTTTGTCATCGAGCT 57.431 45.000 0.00 0.00 0.00 4.09
1306 2883 4.080751 CGTTATTTCTCTTGGGGTCCCTTA 60.081 45.833 8.15 0.00 36.94 2.69
1307 2884 5.572066 CGTTATTTCTCTTGGGGTCCCTTAA 60.572 44.000 8.15 2.95 36.94 1.85
1634 3225 1.486211 CCTCCATGAGGGTAAGTCGT 58.514 55.000 2.04 0.00 45.43 4.34
1776 3368 2.964464 TGAATTGGTGTCATGGCAGTTT 59.036 40.909 0.00 0.00 0.00 2.66
2076 3672 1.164411 CGCCTGGTTGATTGCAAGTA 58.836 50.000 4.94 0.00 34.01 2.24
2460 4060 3.665675 GATCAACACGCCGCCCTCT 62.666 63.158 0.00 0.00 0.00 3.69
2478 4078 3.357444 TTCGGCCACCCCATCATGG 62.357 63.158 2.24 0.00 39.16 3.66
2499 4099 1.733389 GCCAATTCCATGTGAACAGCG 60.733 52.381 0.00 0.00 35.31 5.18
2500 4100 1.135315 CCAATTCCATGTGAACAGCGG 60.135 52.381 0.00 0.00 35.31 5.52
2501 4101 0.527565 AATTCCATGTGAACAGCGGC 59.472 50.000 0.00 0.00 35.31 6.53
2502 4102 1.647545 ATTCCATGTGAACAGCGGCG 61.648 55.000 0.51 0.51 35.31 6.46
2503 4103 3.803082 CCATGTGAACAGCGGCGG 61.803 66.667 9.78 0.00 0.00 6.13
2504 4104 4.465512 CATGTGAACAGCGGCGGC 62.466 66.667 9.78 8.43 40.37 6.53
2507 4107 4.683334 GTGAACAGCGGCGGCAAC 62.683 66.667 19.21 0.00 43.41 4.17
2509 4109 3.959975 GAACAGCGGCGGCAACAA 61.960 61.111 19.21 0.00 43.41 2.83
2510 4110 4.264638 AACAGCGGCGGCAACAAC 62.265 61.111 19.21 0.00 43.41 3.32
2512 4112 4.041917 CAGCGGCGGCAACAACAT 62.042 61.111 19.21 0.00 43.41 2.71
2513 4113 4.041917 AGCGGCGGCAACAACATG 62.042 61.111 19.21 0.00 43.41 3.21
2514 4114 4.341502 GCGGCGGCAACAACATGT 62.342 61.111 9.78 0.00 39.62 3.21
2540 4140 0.461870 TTGGGCAGATGGATTCGTCG 60.462 55.000 0.00 0.00 34.23 5.12
2546 4146 1.661821 GATGGATTCGTCGGCCTCG 60.662 63.158 0.00 5.97 37.82 4.63
2608 4208 2.987547 GTCGGAGGACGGTGACCA 60.988 66.667 1.11 0.00 44.45 4.02
2613 4213 0.177373 GGAGGACGGTGACCATAACC 59.823 60.000 1.11 0.00 0.00 2.85
2720 4323 1.601759 CACCTTGCAGGGGTCACTG 60.602 63.158 20.34 3.80 40.58 3.66
2746 4349 2.580815 CCATCAGACGCTGCTCCA 59.419 61.111 0.00 0.00 0.00 3.86
2838 4441 1.311859 ATATACGACCGGCGAACTGA 58.688 50.000 22.10 5.71 44.57 3.41
2947 4552 2.327002 CTGCAGGTGTGTGTGTGTGC 62.327 60.000 5.57 0.00 0.00 4.57
2949 4554 3.202001 AGGTGTGTGTGTGTGCGC 61.202 61.111 0.00 0.00 0.00 6.09
3106 4715 1.673168 GTGCTAGGAAGGGCTTGATG 58.327 55.000 0.00 0.00 0.00 3.07
3131 4740 1.135373 TGAGATCGACGGACTGAAAGC 60.135 52.381 0.00 0.00 37.60 3.51
3140 4749 1.813862 CGGACTGAAAGCCTGGAACAA 60.814 52.381 0.00 0.00 34.98 2.83
3157 4766 5.066634 TGGAACAAAAGATGTAAAACAGCGA 59.933 36.000 0.00 0.00 42.99 4.93
3249 4859 6.494893 TTGTATACAGAAATGTTCAGCCAC 57.505 37.500 5.56 0.00 0.00 5.01
3279 4889 8.058915 CGAGAAGATTATCGAATCCAAGAAAAC 58.941 37.037 3.63 0.00 43.95 2.43
3296 4906 7.222805 CCAAGAAAACAAGAAGTAAAGAAAGGC 59.777 37.037 0.00 0.00 0.00 4.35
3390 5000 4.320935 CCAGAAAAACACATAAAGGACGGG 60.321 45.833 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.829706 ACTATTCTTTTCTTTCCAGGGACATAC 59.170 37.037 0.00 0.00 0.00 2.39
44 45 6.715264 TGAACTATTCTTTTCTTTCCAGGGAC 59.285 38.462 0.00 0.00 0.00 4.46
50 51 9.574458 GGCTATTTGAACTATTCTTTTCTTTCC 57.426 33.333 0.00 0.00 0.00 3.13
95 96 4.521639 ACCTAGTATGATTTCGATGCGGTA 59.478 41.667 0.00 0.00 0.00 4.02
231 233 2.158519 AGACAAGAAATTGGACCCCGTT 60.159 45.455 0.00 0.00 0.00 4.44
281 284 2.928801 AGGATTTGTTTGTTTGGGCC 57.071 45.000 0.00 0.00 0.00 5.80
353 356 1.183549 CGTGGGTCTAGTAGCAAGGT 58.816 55.000 0.00 0.00 0.00 3.50
454 464 0.326904 AGGGATGCATGAGTCAGGGA 60.327 55.000 2.46 3.80 0.00 4.20
472 482 2.286365 TTCCTTGGGTGTTTGCCTAG 57.714 50.000 0.00 0.00 0.00 3.02
474 484 1.063266 TCTTTCCTTGGGTGTTTGCCT 60.063 47.619 0.00 0.00 0.00 4.75
476 486 2.693074 TCTTCTTTCCTTGGGTGTTTGC 59.307 45.455 0.00 0.00 0.00 3.68
477 487 5.535753 ATTCTTCTTTCCTTGGGTGTTTG 57.464 39.130 0.00 0.00 0.00 2.93
481 491 6.648879 TTGTTATTCTTCTTTCCTTGGGTG 57.351 37.500 0.00 0.00 0.00 4.61
507 534 4.082733 TCGGATCGTATAATCAGCAGGAAG 60.083 45.833 0.00 0.00 0.00 3.46
513 540 7.813852 AAAATAGTCGGATCGTATAATCAGC 57.186 36.000 0.00 0.00 0.00 4.26
537 564 2.074729 ACGGAATCCCACACCAAAAA 57.925 45.000 0.00 0.00 0.00 1.94
538 565 1.683917 CAACGGAATCCCACACCAAAA 59.316 47.619 0.00 0.00 0.00 2.44
540 567 0.183971 ACAACGGAATCCCACACCAA 59.816 50.000 0.00 0.00 0.00 3.67
541 568 0.536233 CACAACGGAATCCCACACCA 60.536 55.000 0.00 0.00 0.00 4.17
572 2063 3.541713 GGGCCGAATCTCTCGCCT 61.542 66.667 0.00 0.00 46.71 5.52
709 2217 2.433436 GAAGGGTGTGTGTGGTTATCC 58.567 52.381 0.00 0.00 0.00 2.59
723 2231 1.057851 TCTGTGGTTTCGGGAAGGGT 61.058 55.000 0.00 0.00 0.00 4.34
725 2233 0.685097 TCTCTGTGGTTTCGGGAAGG 59.315 55.000 0.00 0.00 0.00 3.46
786 2309 2.293399 GGAATTTTGTCCTCTTGTGCGT 59.707 45.455 0.00 0.00 34.56 5.24
1306 2883 1.928868 AGCCTTGGCTGCAGTTAATT 58.071 45.000 16.64 0.00 0.00 1.40
1307 2884 2.648059 CTAGCCTTGGCTGCAGTTAAT 58.352 47.619 23.03 0.00 0.00 1.40
1436 3024 2.825836 CAGCGGATGGGCTTGTCC 60.826 66.667 0.00 0.00 42.53 4.02
1582 3173 3.638592 ATGGGGCGGTAGGTGTTGC 62.639 63.158 0.00 0.00 0.00 4.17
1634 3225 1.210931 GCTGTACCGTACGTGCTGA 59.789 57.895 15.21 0.00 0.00 4.26
1752 3344 2.494471 CTGCCATGACACCAATTCACAT 59.506 45.455 0.00 0.00 0.00 3.21
1753 3345 1.887854 CTGCCATGACACCAATTCACA 59.112 47.619 0.00 0.00 0.00 3.58
1756 3348 3.005684 TGAAACTGCCATGACACCAATTC 59.994 43.478 0.00 0.00 0.00 2.17
1761 3353 1.403249 GCATGAAACTGCCATGACACC 60.403 52.381 0.00 0.00 42.89 4.16
1776 3368 3.047280 GTTCGGTGCCACGCATGA 61.047 61.111 0.00 0.00 41.91 3.07
1828 3420 2.799017 GTACACCCTCCCGGAAAAATT 58.201 47.619 0.73 0.00 34.64 1.82
1876 3468 0.894835 ACCCGATTCCATTTTGGCAC 59.105 50.000 0.00 0.00 37.47 5.01
2107 3704 9.585099 ACGGATCACACGTAGTATTAAATTTAA 57.415 29.630 12.85 12.85 41.61 1.52
2334 3934 1.002868 GCATCCTCTGTGTGCCACT 60.003 57.895 0.00 0.00 35.11 4.00
2435 4035 3.411351 GCGTGTTGATCGTGCCGT 61.411 61.111 0.00 0.00 0.00 5.68
2460 4060 2.275089 CATGATGGGGTGGCCGAA 59.725 61.111 0.00 0.00 0.00 4.30
2478 4078 1.404583 GCTGTTCACATGGAATTGGCC 60.405 52.381 0.00 0.00 37.93 5.36
2499 4099 2.126888 CGACATGTTGTTGCCGCC 60.127 61.111 0.00 0.00 0.00 6.13
2504 4104 1.401530 CAAGCTGCGACATGTTGTTG 58.598 50.000 14.64 7.27 34.88 3.33
2505 4105 0.311790 CCAAGCTGCGACATGTTGTT 59.688 50.000 14.64 0.00 0.00 2.83
2506 4106 1.518056 CCCAAGCTGCGACATGTTGT 61.518 55.000 14.64 0.00 0.00 3.32
2507 4107 1.210931 CCCAAGCTGCGACATGTTG 59.789 57.895 8.88 8.88 0.00 3.33
2508 4108 2.629656 GCCCAAGCTGCGACATGTT 61.630 57.895 0.00 0.00 35.50 2.71
2509 4109 3.058160 GCCCAAGCTGCGACATGT 61.058 61.111 0.00 0.00 35.50 3.21
2510 4110 3.047718 CTGCCCAAGCTGCGACATG 62.048 63.158 0.00 0.00 40.80 3.21
2511 4111 2.547640 ATCTGCCCAAGCTGCGACAT 62.548 55.000 0.00 0.00 40.80 3.06
2512 4112 3.258228 ATCTGCCCAAGCTGCGACA 62.258 57.895 0.00 0.00 40.80 4.35
2513 4113 2.437359 ATCTGCCCAAGCTGCGAC 60.437 61.111 0.00 0.00 40.80 5.19
2514 4114 2.437180 CATCTGCCCAAGCTGCGA 60.437 61.111 0.00 0.00 40.80 5.10
2608 4208 2.185093 GGTTCGTCGGCCGGTTAT 59.815 61.111 27.83 0.00 37.11 1.89
2657 4257 1.269257 GCACCCAAGCAAGAACTGTTC 60.269 52.381 12.54 12.54 0.00 3.18
2746 4349 4.350816 TCATCCGATCCCCATGTTAGAAAT 59.649 41.667 0.00 0.00 0.00 2.17
2838 4441 8.149631 ACCCCAATAATTGTTCTTCAAATCAT 57.850 30.769 0.00 0.00 39.62 2.45
2986 4595 7.996788 TCTACTAGTATGATCCATGGACCTAA 58.003 38.462 18.99 3.04 0.00 2.69
3044 4653 3.199727 TGATTGTACTGCATGCCTAGGAA 59.800 43.478 14.75 0.50 0.00 3.36
3106 4715 1.329292 CAGTCCGTCGATCTCAGTCTC 59.671 57.143 0.00 0.00 0.00 3.36
3131 4740 5.691754 GCTGTTTTACATCTTTTGTTCCAGG 59.308 40.000 0.00 0.00 39.87 4.45
3194 4804 9.586435 TGAGTACAATAGTGAAACATGATACAG 57.414 33.333 0.00 0.00 41.43 2.74
3195 4805 9.936759 TTGAGTACAATAGTGAAACATGATACA 57.063 29.630 0.00 0.00 41.43 2.29
3198 4808 7.554118 CCCTTGAGTACAATAGTGAAACATGAT 59.446 37.037 0.00 0.00 35.59 2.45
3200 4810 6.655003 ACCCTTGAGTACAATAGTGAAACATG 59.345 38.462 0.00 0.00 35.59 3.21
3201 4811 6.779860 ACCCTTGAGTACAATAGTGAAACAT 58.220 36.000 0.00 0.00 35.59 2.71
3203 4813 7.012989 ACAAACCCTTGAGTACAATAGTGAAAC 59.987 37.037 0.00 0.00 36.33 2.78
3204 4814 7.057894 ACAAACCCTTGAGTACAATAGTGAAA 58.942 34.615 0.00 0.00 36.33 2.69
3206 4816 6.182507 ACAAACCCTTGAGTACAATAGTGA 57.817 37.500 0.00 0.00 36.33 3.41
3207 4817 9.095065 GTATACAAACCCTTGAGTACAATAGTG 57.905 37.037 0.00 0.00 36.33 2.74
3249 4859 5.281727 TGGATTCGATAATCTTCTCGTGTG 58.718 41.667 0.00 0.00 41.18 3.82
3279 4889 4.750098 TCTCGTGCCTTTCTTTACTTCTTG 59.250 41.667 0.00 0.00 0.00 3.02
3296 4906 5.051307 TGTTCGTACTTGTGATTTTCTCGTG 60.051 40.000 0.00 0.00 0.00 4.35
3390 5000 3.002348 CGGGTTCCATATTCTTCTTTCGC 59.998 47.826 0.00 0.00 0.00 4.70
3643 5368 4.463879 CCCACTCTGAGCCGCCAG 62.464 72.222 4.19 3.24 35.55 4.85
3721 5446 8.994170 GTAAATCAATAATTAGAGCTGTCCTCC 58.006 37.037 0.00 0.00 41.74 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.