Multiple sequence alignment - TraesCS4D01G175400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G175400 chr4D 100.000 9739 0 0 1 9739 303851551 303841813 0.000000e+00 17985.0
1 TraesCS4D01G175400 chr4D 80.039 1533 226 42 4430 5907 476335710 476334203 0.000000e+00 1062.0
2 TraesCS4D01G175400 chr4D 77.108 581 67 32 5295 5847 465572859 465573401 9.630000e-70 276.0
3 TraesCS4D01G175400 chr4D 96.296 81 3 0 377 457 303853446 303853526 6.140000e-27 134.0
4 TraesCS4D01G175400 chr4D 89.362 94 6 3 7995 8086 383775561 383775652 2.220000e-21 115.0
5 TraesCS4D01G175400 chr4D 89.247 93 5 3 7999 8086 401206912 401206820 2.880000e-20 111.0
6 TraesCS4D01G175400 chr4D 90.909 77 4 3 9588 9662 30386721 30386646 6.220000e-17 100.0
7 TraesCS4D01G175400 chr4A 95.789 3776 108 16 458 4199 175396998 175400756 0.000000e+00 6045.0
8 TraesCS4D01G175400 chr4A 93.252 2371 77 28 5428 7752 175400854 175403187 0.000000e+00 3415.0
9 TraesCS4D01G175400 chr4A 94.888 1702 36 13 8084 9739 175404354 175406050 0.000000e+00 2614.0
10 TraesCS4D01G175400 chr4A 95.669 254 3 2 7750 8001 175404106 175404353 1.520000e-107 401.0
11 TraesCS4D01G175400 chr4A 92.000 75 3 3 9587 9659 319777610 319777683 1.730000e-17 102.0
12 TraesCS4D01G175400 chr4B 96.560 3285 88 13 772 4039 379093875 379090599 0.000000e+00 5417.0
13 TraesCS4D01G175400 chr4B 94.366 1988 54 17 7805 9739 379085174 379083192 0.000000e+00 2998.0
14 TraesCS4D01G175400 chr4B 96.248 1546 39 5 5862 7396 379086708 379085171 0.000000e+00 2516.0
15 TraesCS4D01G175400 chr4B 89.853 1498 102 14 4135 5612 379088895 379087428 0.000000e+00 1879.0
16 TraesCS4D01G175400 chr4B 93.103 319 9 6 463 769 379094578 379094261 1.150000e-123 455.0
17 TraesCS4D01G175400 chr4B 96.000 100 4 0 4041 4140 379090425 379090326 7.830000e-36 163.0
18 TraesCS4D01G175400 chr4B 93.407 91 5 1 7993 8083 364668398 364668487 6.140000e-27 134.0
19 TraesCS4D01G175400 chr4B 93.023 86 5 1 7999 8083 315723359 315723274 3.690000e-24 124.0
20 TraesCS4D01G175400 chr4B 86.792 106 13 1 7999 8103 315723274 315723379 6.180000e-22 117.0
21 TraesCS4D01G175400 chr4B 86.735 98 11 2 72 169 58766622 58766717 3.720000e-19 108.0
22 TraesCS4D01G175400 chr4B 93.243 74 2 3 9588 9659 308697748 308697820 1.340000e-18 106.0
23 TraesCS4D01G175400 chr4B 91.026 78 4 3 9587 9662 388854304 388854228 1.730000e-17 102.0
24 TraesCS4D01G175400 chr1D 82.335 1619 184 46 4314 5859 40807810 40809399 0.000000e+00 1312.0
25 TraesCS4D01G175400 chr1D 79.763 1685 273 46 4241 5903 377956623 377954985 0.000000e+00 1160.0
26 TraesCS4D01G175400 chr1D 79.130 1586 199 73 4408 5911 25362141 25363676 0.000000e+00 974.0
27 TraesCS4D01G175400 chr1D 93.333 90 2 3 7999 8087 479104175 479104089 7.940000e-26 130.0
28 TraesCS4D01G175400 chr1D 91.111 90 5 2 7999 8088 486328352 486328266 1.720000e-22 119.0
29 TraesCS4D01G175400 chr1D 91.765 85 5 2 7999 8083 199068355 199068273 6.180000e-22 117.0
30 TraesCS4D01G175400 chr1D 89.474 95 7 3 7995 8086 407873329 407873423 6.180000e-22 117.0
31 TraesCS4D01G175400 chr1D 90.698 86 8 0 7998 8083 357317624 357317709 2.220000e-21 115.0
32 TraesCS4D01G175400 chr1D 89.130 92 5 3 7996 8086 479104091 479104178 1.030000e-19 110.0
33 TraesCS4D01G175400 chr1D 89.610 77 5 3 9588 9662 397087673 397087598 2.900000e-15 95.3
34 TraesCS4D01G175400 chr1D 86.747 83 11 0 5611 5693 424725625 424725543 1.040000e-14 93.5
35 TraesCS4D01G175400 chr2D 81.190 1680 206 39 4267 5869 491945014 491946660 0.000000e+00 1251.0
36 TraesCS4D01G175400 chr2D 85.590 229 29 3 5688 5912 12665846 12666074 4.550000e-58 237.0
37 TraesCS4D01G175400 chr2D 94.253 87 2 3 7999 8083 24451748 24451833 7.940000e-26 130.0
38 TraesCS4D01G175400 chr3D 81.030 1708 198 44 4240 5914 365124641 365126255 0.000000e+00 1243.0
39 TraesCS4D01G175400 chr3D 80.554 1697 226 46 4241 5914 159437690 159436075 0.000000e+00 1210.0
40 TraesCS4D01G175400 chr3D 80.568 1127 145 26 4479 5581 567158453 567159529 0.000000e+00 800.0
41 TraesCS4D01G175400 chr3D 93.182 88 5 1 7999 8086 422481995 422482081 2.850000e-25 128.0
42 TraesCS4D01G175400 chr3D 90.625 96 7 2 7988 8083 523900038 523900131 1.030000e-24 126.0
43 TraesCS4D01G175400 chr3D 89.583 96 8 2 7988 8083 523844952 523845045 4.780000e-23 121.0
44 TraesCS4D01G175400 chr5D 83.126 1369 172 25 4586 5915 388066419 388065071 0.000000e+00 1194.0
45 TraesCS4D01G175400 chr5D 79.050 1747 256 51 4241 5914 9126421 9128130 0.000000e+00 1098.0
46 TraesCS4D01G175400 chr5D 83.123 1108 152 12 4244 5320 233012918 233011815 0.000000e+00 977.0
47 TraesCS4D01G175400 chr5D 86.466 399 36 8 66 455 388790132 388790521 1.170000e-113 422.0
48 TraesCS4D01G175400 chr5D 81.433 307 47 7 4242 4543 424942016 424941715 9.770000e-60 243.0
49 TraesCS4D01G175400 chr5D 96.552 87 2 1 7996 8082 428386584 428386499 1.020000e-29 143.0
50 TraesCS4D01G175400 chr2B 85.640 1156 141 14 4448 5582 158638316 158639467 0.000000e+00 1192.0
51 TraesCS4D01G175400 chr6D 84.575 1154 128 23 4244 5360 263488261 263487121 0.000000e+00 1099.0
52 TraesCS4D01G175400 chr6D 81.163 1444 156 52 4529 5914 346270764 346269379 0.000000e+00 1053.0
53 TraesCS4D01G175400 chr6D 77.461 1686 261 66 4244 5847 343137370 343135722 0.000000e+00 898.0
54 TraesCS4D01G175400 chr6D 79.478 1379 163 48 4589 5915 339712887 339711577 0.000000e+00 869.0
55 TraesCS4D01G175400 chr6D 90.323 93 8 1 7999 8090 470575008 470575100 4.780000e-23 121.0
56 TraesCS4D01G175400 chr6D 93.506 77 4 1 8012 8087 91072540 91072616 7.990000e-21 113.0
57 TraesCS4D01G175400 chr6D 90.698 86 7 1 7999 8083 470575093 470575008 7.990000e-21 113.0
58 TraesCS4D01G175400 chr6D 93.151 73 4 1 7999 8070 91072612 91072540 1.340000e-18 106.0
59 TraesCS4D01G175400 chr6D 91.026 78 4 3 9587 9662 135463167 135463091 1.730000e-17 102.0
60 TraesCS4D01G175400 chr6D 91.892 74 3 3 9588 9659 168256203 168256275 6.220000e-17 100.0
61 TraesCS4D01G175400 chr6D 87.952 83 3 4 8002 8083 382614392 382614468 3.750000e-14 91.6
62 TraesCS4D01G175400 chr6D 85.263 95 2 6 7999 8081 225779218 225779124 4.850000e-13 87.9
63 TraesCS4D01G175400 chr6D 85.393 89 8 4 7999 8087 451070027 451070110 4.850000e-13 87.9
64 TraesCS4D01G175400 chr6D 83.168 101 8 6 7998 8091 369858666 369858568 6.270000e-12 84.2
65 TraesCS4D01G175400 chr6D 84.444 90 7 5 8001 8083 369858576 369858665 2.250000e-11 82.4
66 TraesCS4D01G175400 chr3A 81.924 1372 183 31 4561 5909 168830559 168831888 0.000000e+00 1099.0
67 TraesCS4D01G175400 chr3A 79.290 1183 171 25 4778 5909 681327588 681326429 0.000000e+00 760.0
68 TraesCS4D01G175400 chrUn 83.247 1164 165 14 4427 5577 3056865 3055719 0.000000e+00 1042.0
69 TraesCS4D01G175400 chrUn 89.535 86 8 1 7999 8083 92722824 92722739 3.720000e-19 108.0
70 TraesCS4D01G175400 chrUn 90.909 77 4 3 9588 9662 93408355 93408280 6.220000e-17 100.0
71 TraesCS4D01G175400 chrUn 90.909 77 4 3 9588 9662 195875604 195875529 6.220000e-17 100.0
72 TraesCS4D01G175400 chrUn 90.909 77 4 3 9588 9662 195881394 195881319 6.220000e-17 100.0
73 TraesCS4D01G175400 chrUn 90.909 77 4 3 9588 9662 216517326 216517251 6.220000e-17 100.0
74 TraesCS4D01G175400 chrUn 91.892 74 3 3 9588 9659 389360412 389360484 6.220000e-17 100.0
75 TraesCS4D01G175400 chrUn 90.909 77 4 3 9588 9662 444245155 444245080 6.220000e-17 100.0
76 TraesCS4D01G175400 chrUn 87.356 87 8 3 7999 8083 92722739 92722824 8.050000e-16 97.1
77 TraesCS4D01G175400 chrUn 89.610 77 5 3 9588 9662 195872306 195872231 2.900000e-15 95.3
78 TraesCS4D01G175400 chrUn 89.610 77 5 3 9588 9662 195873776 195873701 2.900000e-15 95.3
79 TraesCS4D01G175400 chrUn 89.610 77 5 3 9588 9662 195877344 195877269 2.900000e-15 95.3
80 TraesCS4D01G175400 chrUn 85.714 98 2 2 7999 8084 362465899 362465802 1.040000e-14 93.5
81 TraesCS4D01G175400 chrUn 85.714 98 2 3 7998 8083 477580650 477580553 1.040000e-14 93.5
82 TraesCS4D01G175400 chrUn 84.694 98 3 3 7999 8084 314370573 314370670 4.850000e-13 87.9
83 TraesCS4D01G175400 chrUn 84.536 97 3 5 7999 8083 71312857 71312953 1.740000e-12 86.1
84 TraesCS4D01G175400 chrUn 83.505 97 4 3 7999 8083 21636770 21636674 8.110000e-11 80.5
85 TraesCS4D01G175400 chrUn 100.000 43 0 0 8042 8084 50416623 50416665 8.110000e-11 80.5
86 TraesCS4D01G175400 chrUn 84.444 90 4 3 7997 8086 215727711 215727632 8.110000e-11 80.5
87 TraesCS4D01G175400 chrUn 83.505 97 4 4 7999 8083 347977093 347977189 8.110000e-11 80.5
88 TraesCS4D01G175400 chrUn 83.505 97 4 4 7999 8083 378080293 378080389 8.110000e-11 80.5
89 TraesCS4D01G175400 chrUn 100.000 42 0 0 8042 8083 48471422 48471381 2.920000e-10 78.7
90 TraesCS4D01G175400 chrUn 100.000 42 0 0 8042 8083 48498200 48498159 2.920000e-10 78.7
91 TraesCS4D01G175400 chrUn 100.000 42 0 0 8042 8083 108661241 108661282 2.920000e-10 78.7
92 TraesCS4D01G175400 chrUn 100.000 42 0 0 7998 8039 194666111 194666152 2.920000e-10 78.7
93 TraesCS4D01G175400 chrUn 100.000 42 0 0 8042 8083 235113523 235113482 2.920000e-10 78.7
94 TraesCS4D01G175400 chrUn 100.000 42 0 0 8042 8083 237211139 237211180 2.920000e-10 78.7
95 TraesCS4D01G175400 chrUn 100.000 42 0 0 7998 8039 310390081 310390122 2.920000e-10 78.7
96 TraesCS4D01G175400 chrUn 100.000 42 0 0 8042 8083 346824015 346824056 2.920000e-10 78.7
97 TraesCS4D01G175400 chrUn 88.060 67 5 3 8027 8091 71312914 71312849 1.050000e-09 76.8
98 TraesCS4D01G175400 chrUn 89.655 58 5 1 7998 8054 27746564 27746621 1.360000e-08 73.1
99 TraesCS4D01G175400 chrUn 87.500 64 4 4 7999 8060 50416664 50416603 4.880000e-08 71.3
100 TraesCS4D01G175400 chrUn 100.000 33 0 0 5580 5612 98531533 98531501 2.940000e-05 62.1
101 TraesCS4D01G175400 chr3B 78.516 1671 254 41 4244 5847 540095332 540096964 0.000000e+00 1000.0
102 TraesCS4D01G175400 chr3B 82.616 1116 141 17 4240 5342 475498322 475499397 0.000000e+00 937.0
103 TraesCS4D01G175400 chr3B 81.009 1090 171 20 4512 5577 710393431 710394508 0.000000e+00 833.0
104 TraesCS4D01G175400 chr3B 79.110 1101 147 23 4816 5859 628471628 628472702 0.000000e+00 682.0
105 TraesCS4D01G175400 chr3B 76.102 431 59 16 5513 5914 612303620 612304035 1.670000e-42 185.0
106 TraesCS4D01G175400 chr6A 80.724 1271 188 33 4373 5611 77773463 77772218 0.000000e+00 937.0
107 TraesCS4D01G175400 chr6A 92.222 90 4 2 7999 8085 495448750 495448839 3.690000e-24 124.0
108 TraesCS4D01G175400 chr2A 82.600 1046 133 22 4242 5258 667034851 667035876 0.000000e+00 878.0
109 TraesCS4D01G175400 chr2A 92.355 484 13 9 1 460 735795525 735796008 0.000000e+00 667.0
110 TraesCS4D01G175400 chr2A 95.062 81 4 0 377 457 735793559 735793479 2.850000e-25 128.0
111 TraesCS4D01G175400 chr2A 90.361 83 8 0 377 459 734799845 734799763 1.030000e-19 110.0
112 TraesCS4D01G175400 chr1B 84.198 848 100 12 4305 5139 489577034 489577860 0.000000e+00 793.0
113 TraesCS4D01G175400 chr1B 82.514 692 105 7 4599 5276 593904991 593905680 2.340000e-165 593.0
114 TraesCS4D01G175400 chr5A 83.091 893 122 12 4427 5298 592062703 592063587 0.000000e+00 785.0
115 TraesCS4D01G175400 chr5A 78.162 925 137 35 4972 5859 22612163 22613059 6.700000e-146 529.0
116 TraesCS4D01G175400 chr5A 84.262 413 36 14 69 457 491685954 491685547 9.230000e-100 375.0
117 TraesCS4D01G175400 chr1A 80.021 971 143 27 4924 5856 487460129 487461086 0.000000e+00 671.0
118 TraesCS4D01G175400 chr1A 79.345 702 106 18 5216 5898 257984353 257983672 3.210000e-124 457.0
119 TraesCS4D01G175400 chr1A 92.941 85 4 1 7999 8083 250197873 250197791 1.330000e-23 122.0
120 TraesCS4D01G175400 chr7A 78.953 917 160 16 4686 5574 639298054 639298965 2.340000e-165 593.0
121 TraesCS4D01G175400 chr7A 80.713 477 53 22 9 451 79140906 79140435 1.570000e-87 335.0
122 TraesCS4D01G175400 chr7A 96.471 85 2 1 7999 8083 290616133 290616050 1.320000e-28 139.0
123 TraesCS4D01G175400 chr7A 91.667 96 7 1 7988 8083 290616039 290616133 2.210000e-26 132.0
124 TraesCS4D01G175400 chr7A 88.889 81 9 0 377 457 709291441 709291521 6.220000e-17 100.0
125 TraesCS4D01G175400 chr7D 76.893 1030 172 35 4926 5912 186516333 186517339 3.120000e-144 523.0
126 TraesCS4D01G175400 chr7D 91.500 200 15 2 720 917 561602712 561602513 3.470000e-69 274.0
127 TraesCS4D01G175400 chr7D 88.208 212 23 2 5702 5912 506677956 506678166 1.620000e-62 252.0
128 TraesCS4D01G175400 chr7D 85.253 217 30 2 5697 5912 34485814 34486029 1.270000e-53 222.0
129 TraesCS4D01G175400 chr7D 85.143 175 19 4 947 1114 561602528 561602354 1.300000e-38 172.0
130 TraesCS4D01G175400 chr7D 90.323 93 8 1 7992 8083 529677665 529677757 4.780000e-23 121.0
131 TraesCS4D01G175400 chr7D 89.796 98 4 2 7995 8092 613452390 613452299 4.780000e-23 121.0
132 TraesCS4D01G175400 chr5B 77.938 834 141 27 4619 5436 246591184 246590378 1.900000e-131 481.0
133 TraesCS4D01G175400 chr5B 82.274 299 42 8 4247 4539 547542619 547542326 2.100000e-61 248.0
134 TraesCS4D01G175400 chr5B 83.691 233 35 3 5689 5919 606781044 606780813 5.920000e-52 217.0
135 TraesCS4D01G175400 chr7B 78.957 556 83 19 5391 5917 689421137 689420587 2.010000e-91 348.0
136 TraesCS4D01G175400 chr7B 89.916 119 12 0 737 855 609928267 609928149 4.710000e-33 154.0
137 TraesCS4D01G175400 chr7B 82.353 170 19 6 955 1114 610269810 610269642 4.740000e-28 137.0
138 TraesCS4D01G175400 chr7B 92.857 84 6 0 1031 1114 609928137 609928054 1.330000e-23 122.0
139 TraesCS4D01G175400 chr7B 86.420 81 10 1 377 457 608208095 608208174 4.850000e-13 87.9
140 TraesCS4D01G175400 chr6B 88.235 102 11 1 7984 8084 39331516 39331617 4.780000e-23 121.0
141 TraesCS4D01G175400 chr6B 90.909 77 5 2 9587 9662 28535378 28535303 1.730000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G175400 chr4D 303841813 303851551 9738 True 17985.00 17985 100.0000 1 9739 1 chr4D.!!$R2 9738
1 TraesCS4D01G175400 chr4D 476334203 476335710 1507 True 1062.00 1062 80.0390 4430 5907 1 chr4D.!!$R4 1477
2 TraesCS4D01G175400 chr4D 465572859 465573401 542 False 276.00 276 77.1080 5295 5847 1 chr4D.!!$F3 552
3 TraesCS4D01G175400 chr4A 175396998 175406050 9052 False 3118.75 6045 94.8995 458 9739 4 chr4A.!!$F2 9281
4 TraesCS4D01G175400 chr4B 379083192 379094578 11386 True 2238.00 5417 94.3550 463 9739 6 chr4B.!!$R3 9276
5 TraesCS4D01G175400 chr1D 40807810 40809399 1589 False 1312.00 1312 82.3350 4314 5859 1 chr1D.!!$F2 1545
6 TraesCS4D01G175400 chr1D 377954985 377956623 1638 True 1160.00 1160 79.7630 4241 5903 1 chr1D.!!$R2 1662
7 TraesCS4D01G175400 chr1D 25362141 25363676 1535 False 974.00 974 79.1300 4408 5911 1 chr1D.!!$F1 1503
8 TraesCS4D01G175400 chr2D 491945014 491946660 1646 False 1251.00 1251 81.1900 4267 5869 1 chr2D.!!$F3 1602
9 TraesCS4D01G175400 chr3D 365124641 365126255 1614 False 1243.00 1243 81.0300 4240 5914 1 chr3D.!!$F1 1674
10 TraesCS4D01G175400 chr3D 159436075 159437690 1615 True 1210.00 1210 80.5540 4241 5914 1 chr3D.!!$R1 1673
11 TraesCS4D01G175400 chr3D 567158453 567159529 1076 False 800.00 800 80.5680 4479 5581 1 chr3D.!!$F5 1102
12 TraesCS4D01G175400 chr5D 388065071 388066419 1348 True 1194.00 1194 83.1260 4586 5915 1 chr5D.!!$R2 1329
13 TraesCS4D01G175400 chr5D 9126421 9128130 1709 False 1098.00 1098 79.0500 4241 5914 1 chr5D.!!$F1 1673
14 TraesCS4D01G175400 chr5D 233011815 233012918 1103 True 977.00 977 83.1230 4244 5320 1 chr5D.!!$R1 1076
15 TraesCS4D01G175400 chr2B 158638316 158639467 1151 False 1192.00 1192 85.6400 4448 5582 1 chr2B.!!$F1 1134
16 TraesCS4D01G175400 chr6D 263487121 263488261 1140 True 1099.00 1099 84.5750 4244 5360 1 chr6D.!!$R4 1116
17 TraesCS4D01G175400 chr6D 346269379 346270764 1385 True 1053.00 1053 81.1630 4529 5914 1 chr6D.!!$R7 1385
18 TraesCS4D01G175400 chr6D 343135722 343137370 1648 True 898.00 898 77.4610 4244 5847 1 chr6D.!!$R6 1603
19 TraesCS4D01G175400 chr6D 339711577 339712887 1310 True 869.00 869 79.4780 4589 5915 1 chr6D.!!$R5 1326
20 TraesCS4D01G175400 chr3A 168830559 168831888 1329 False 1099.00 1099 81.9240 4561 5909 1 chr3A.!!$F1 1348
21 TraesCS4D01G175400 chr3A 681326429 681327588 1159 True 760.00 760 79.2900 4778 5909 1 chr3A.!!$R1 1131
22 TraesCS4D01G175400 chrUn 3055719 3056865 1146 True 1042.00 1042 83.2470 4427 5577 1 chrUn.!!$R1 1150
23 TraesCS4D01G175400 chr3B 540095332 540096964 1632 False 1000.00 1000 78.5160 4244 5847 1 chr3B.!!$F2 1603
24 TraesCS4D01G175400 chr3B 475498322 475499397 1075 False 937.00 937 82.6160 4240 5342 1 chr3B.!!$F1 1102
25 TraesCS4D01G175400 chr3B 710393431 710394508 1077 False 833.00 833 81.0090 4512 5577 1 chr3B.!!$F5 1065
26 TraesCS4D01G175400 chr3B 628471628 628472702 1074 False 682.00 682 79.1100 4816 5859 1 chr3B.!!$F4 1043
27 TraesCS4D01G175400 chr6A 77772218 77773463 1245 True 937.00 937 80.7240 4373 5611 1 chr6A.!!$R1 1238
28 TraesCS4D01G175400 chr2A 667034851 667035876 1025 False 878.00 878 82.6000 4242 5258 1 chr2A.!!$F1 1016
29 TraesCS4D01G175400 chr1B 489577034 489577860 826 False 793.00 793 84.1980 4305 5139 1 chr1B.!!$F1 834
30 TraesCS4D01G175400 chr1B 593904991 593905680 689 False 593.00 593 82.5140 4599 5276 1 chr1B.!!$F2 677
31 TraesCS4D01G175400 chr5A 592062703 592063587 884 False 785.00 785 83.0910 4427 5298 1 chr5A.!!$F2 871
32 TraesCS4D01G175400 chr5A 22612163 22613059 896 False 529.00 529 78.1620 4972 5859 1 chr5A.!!$F1 887
33 TraesCS4D01G175400 chr1A 487460129 487461086 957 False 671.00 671 80.0210 4924 5856 1 chr1A.!!$F1 932
34 TraesCS4D01G175400 chr1A 257983672 257984353 681 True 457.00 457 79.3450 5216 5898 1 chr1A.!!$R2 682
35 TraesCS4D01G175400 chr7A 639298054 639298965 911 False 593.00 593 78.9530 4686 5574 1 chr7A.!!$F2 888
36 TraesCS4D01G175400 chr7D 186516333 186517339 1006 False 523.00 523 76.8930 4926 5912 1 chr7D.!!$F2 986
37 TraesCS4D01G175400 chr5B 246590378 246591184 806 True 481.00 481 77.9380 4619 5436 1 chr5B.!!$R1 817
38 TraesCS4D01G175400 chr7B 689420587 689421137 550 True 348.00 348 78.9570 5391 5917 1 chr7B.!!$R2 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.031585 CTCCAGTTCGTTCGTGGTCA 59.968 55.000 0.00 0.00 32.73 4.02 F
302 303 0.037697 TCGTTCGTGGTCAATCCTGG 60.038 55.000 0.00 0.00 37.07 4.45 F
341 342 0.107831 TTTCTTGTGGGACCCAGTCG 59.892 55.000 15.52 4.92 32.34 4.18 F
354 355 0.250295 CCAGTCGACAGAGGGCAAAA 60.250 55.000 19.50 0.00 0.00 2.44 F
468 469 0.469892 AATTCCCCGATCCAATGGCC 60.470 55.000 0.00 0.00 0.00 5.36 F
694 708 1.227853 ACCCAAGTCACCAGTTCGC 60.228 57.895 0.00 0.00 0.00 4.70 F
1423 1821 1.391157 AATGTGCTGGCGTTGTTGGT 61.391 50.000 0.00 0.00 0.00 3.67 F
1907 2311 1.619654 TTGGCTCATGTTTGTGGGAG 58.380 50.000 0.00 0.00 0.00 4.30 F
3168 3591 2.134346 TGAAGAAATTTTGCAAGCGGC 58.866 42.857 0.00 0.00 45.13 6.53 F
4406 6466 0.383949 ATTCGTGCAAACAAAGCCGT 59.616 45.000 0.00 0.00 0.00 5.68 F
5993 9039 0.392998 GTCATGGAGGTCGCACCATT 60.393 55.000 7.86 0.00 43.30 3.16 F
7012 10069 0.320050 TTTTTCTCGGGCAAATGGGC 59.680 50.000 0.00 0.00 42.44 5.36 F
7589 10654 1.061857 GTTTTGTTTTGCCAACAGCCG 59.938 47.619 0.00 0.00 42.71 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 2156 1.043816 ACTAGCATCACTGGCGCTAT 58.956 50.000 7.64 0.0 37.60 2.97 R
1795 2199 1.376086 CTGATGAGTGTGCCACCCA 59.624 57.895 0.00 0.0 34.49 4.51 R
1907 2311 2.296471 ACAGCCGGTAGTACATCTATGC 59.704 50.000 1.90 0.0 0.00 3.14 R
1948 2352 6.790319 ACTGGACCAGGTTATTGAGTTTATT 58.210 36.000 25.34 0.0 35.51 1.40 R
2452 2864 7.123247 AGGTCCATCAAAATCCTAATGAACTTG 59.877 37.037 0.00 0.0 0.00 3.16 R
3089 3512 4.806640 CCTGCATAAGGGTTCAACAATT 57.193 40.909 0.00 0.0 43.15 2.32 R
3799 4224 4.219115 TGGACATTTGAAGTTTGGGCTAA 58.781 39.130 0.00 0.0 0.00 3.09 R
3855 4280 2.490903 ACTGGTGTAGTATCGTGGTCAC 59.509 50.000 0.00 0.0 38.04 3.67 R
4689 6914 0.036388 GTGGGCTCAACATCTTCGGA 60.036 55.000 0.00 0.0 0.00 4.55 R
6644 9691 1.247567 AGCACGTTGAATTCAAGGGG 58.752 50.000 32.73 31.4 45.10 4.79 R
7194 10251 0.975556 TGGCTTCAGATCACCCGCTA 60.976 55.000 0.00 0.0 0.00 4.26 R
8109 12104 1.816835 GCTTTAGGGCAGGTTGGTAAC 59.183 52.381 0.00 0.0 0.00 2.50 R
9411 13419 2.038659 TCCAGGATGCATGACGACATA 58.961 47.619 2.46 0.0 35.09 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.589494 AGCAACAACAACTTGGGCA 58.411 47.368 0.00 0.00 35.40 5.36
19 20 0.461135 AGCAACAACAACTTGGGCAG 59.539 50.000 0.00 0.00 35.40 4.85
20 21 1.153597 GCAACAACAACTTGGGCAGC 61.154 55.000 0.00 0.00 33.97 5.25
21 22 0.175302 CAACAACAACTTGGGCAGCA 59.825 50.000 0.00 0.00 0.00 4.41
22 23 1.122227 AACAACAACTTGGGCAGCAT 58.878 45.000 0.00 0.00 0.00 3.79
23 24 0.675633 ACAACAACTTGGGCAGCATC 59.324 50.000 0.00 0.00 0.00 3.91
24 25 0.675083 CAACAACTTGGGCAGCATCA 59.325 50.000 0.00 0.00 0.00 3.07
25 26 1.068895 CAACAACTTGGGCAGCATCAA 59.931 47.619 0.00 0.00 0.00 2.57
26 27 0.675633 ACAACTTGGGCAGCATCAAC 59.324 50.000 0.00 0.00 0.00 3.18
27 28 0.387622 CAACTTGGGCAGCATCAACG 60.388 55.000 0.00 0.00 0.00 4.10
28 29 1.526575 AACTTGGGCAGCATCAACGG 61.527 55.000 0.00 0.00 0.00 4.44
29 30 1.973281 CTTGGGCAGCATCAACGGT 60.973 57.895 0.00 0.00 0.00 4.83
30 31 1.526575 CTTGGGCAGCATCAACGGTT 61.527 55.000 0.00 0.00 0.00 4.44
31 32 1.523154 TTGGGCAGCATCAACGGTTC 61.523 55.000 0.00 0.00 0.00 3.62
32 33 1.971167 GGGCAGCATCAACGGTTCA 60.971 57.895 0.00 0.00 0.00 3.18
33 34 1.503542 GGCAGCATCAACGGTTCAG 59.496 57.895 0.00 0.00 0.00 3.02
34 35 0.955428 GGCAGCATCAACGGTTCAGA 60.955 55.000 0.00 0.00 0.00 3.27
35 36 0.874390 GCAGCATCAACGGTTCAGAA 59.126 50.000 0.00 0.00 0.00 3.02
36 37 1.470098 GCAGCATCAACGGTTCAGAAT 59.530 47.619 0.00 0.00 0.00 2.40
37 38 2.095059 GCAGCATCAACGGTTCAGAATT 60.095 45.455 0.00 0.00 0.00 2.17
38 39 3.495193 CAGCATCAACGGTTCAGAATTG 58.505 45.455 0.00 0.00 0.00 2.32
39 40 2.489329 AGCATCAACGGTTCAGAATTGG 59.511 45.455 0.00 0.00 0.00 3.16
40 41 2.415893 GCATCAACGGTTCAGAATTGGG 60.416 50.000 0.00 0.00 0.00 4.12
41 42 2.940994 TCAACGGTTCAGAATTGGGA 57.059 45.000 0.00 0.00 0.00 4.37
42 43 2.778299 TCAACGGTTCAGAATTGGGAG 58.222 47.619 0.00 0.00 0.00 4.30
43 44 1.200020 CAACGGTTCAGAATTGGGAGC 59.800 52.381 0.00 0.00 0.00 4.70
44 45 0.400213 ACGGTTCAGAATTGGGAGCA 59.600 50.000 0.00 0.00 0.00 4.26
45 46 1.089920 CGGTTCAGAATTGGGAGCAG 58.910 55.000 0.00 0.00 0.00 4.24
46 47 0.813821 GGTTCAGAATTGGGAGCAGC 59.186 55.000 0.00 0.00 0.00 5.25
47 48 1.538047 GTTCAGAATTGGGAGCAGCA 58.462 50.000 0.00 0.00 0.00 4.41
48 49 1.471684 GTTCAGAATTGGGAGCAGCAG 59.528 52.381 0.00 0.00 0.00 4.24
49 50 0.679002 TCAGAATTGGGAGCAGCAGC 60.679 55.000 0.00 0.00 42.56 5.25
50 51 0.963856 CAGAATTGGGAGCAGCAGCA 60.964 55.000 3.17 0.00 45.49 4.41
51 52 0.251474 AGAATTGGGAGCAGCAGCAA 60.251 50.000 3.17 0.00 45.49 3.91
52 53 0.604578 GAATTGGGAGCAGCAGCAAA 59.395 50.000 3.17 0.00 45.49 3.68
53 54 1.001181 GAATTGGGAGCAGCAGCAAAA 59.999 47.619 3.17 0.00 45.49 2.44
54 55 0.606604 ATTGGGAGCAGCAGCAAAAG 59.393 50.000 3.17 0.00 45.49 2.27
55 56 2.091102 TTGGGAGCAGCAGCAAAAGC 62.091 55.000 3.17 0.00 45.49 3.51
56 57 2.567497 GGGAGCAGCAGCAAAAGCA 61.567 57.895 3.17 0.00 45.49 3.91
57 58 1.364901 GGAGCAGCAGCAAAAGCAA 59.635 52.632 3.17 0.00 45.49 3.91
58 59 0.942884 GGAGCAGCAGCAAAAGCAAC 60.943 55.000 3.17 0.00 45.49 4.17
59 60 1.273455 GAGCAGCAGCAAAAGCAACG 61.273 55.000 3.17 0.00 45.49 4.10
60 61 2.935446 GCAGCAGCAAAAGCAACGC 61.935 57.895 0.00 0.00 41.58 4.84
61 62 1.299620 CAGCAGCAAAAGCAACGCT 60.300 52.632 0.00 0.00 42.56 5.07
62 63 0.040157 CAGCAGCAAAAGCAACGCTA 60.040 50.000 0.00 0.00 38.25 4.26
63 64 0.239347 AGCAGCAAAAGCAACGCTAG 59.761 50.000 0.00 0.00 38.25 3.42
64 65 1.339946 GCAGCAAAAGCAACGCTAGC 61.340 55.000 4.06 4.06 38.25 3.42
65 66 1.061799 CAGCAAAAGCAACGCTAGCG 61.062 55.000 34.27 34.27 38.25 4.26
66 67 1.797537 GCAAAAGCAACGCTAGCGG 60.798 57.895 37.66 23.45 44.69 5.52
67 68 1.797537 CAAAAGCAACGCTAGCGGC 60.798 57.895 37.66 30.97 44.69 6.53
95 96 3.878519 CGAGACCGAGCCCGACTC 61.879 72.222 0.00 0.00 42.47 3.36
102 103 2.104530 GAGCCCGACTCGCCTAAC 59.895 66.667 0.00 0.00 35.18 2.34
103 104 3.427598 GAGCCCGACTCGCCTAACC 62.428 68.421 0.00 0.00 35.18 2.85
104 105 4.525949 GCCCGACTCGCCTAACCC 62.526 72.222 0.00 0.00 0.00 4.11
105 106 2.758737 CCCGACTCGCCTAACCCT 60.759 66.667 0.00 0.00 0.00 4.34
106 107 1.454479 CCCGACTCGCCTAACCCTA 60.454 63.158 0.00 0.00 0.00 3.53
107 108 1.453762 CCCGACTCGCCTAACCCTAG 61.454 65.000 0.00 0.00 0.00 3.02
108 109 1.453762 CCGACTCGCCTAACCCTAGG 61.454 65.000 0.06 0.06 46.85 3.02
109 110 1.453762 CGACTCGCCTAACCCTAGGG 61.454 65.000 27.36 27.36 44.58 3.53
110 111 0.106318 GACTCGCCTAACCCTAGGGA 60.106 60.000 35.38 12.32 44.58 4.20
111 112 0.396835 ACTCGCCTAACCCTAGGGAC 60.397 60.000 35.38 15.80 44.58 4.46
112 113 1.453762 CTCGCCTAACCCTAGGGACG 61.454 65.000 35.38 25.34 44.58 4.79
113 114 2.496291 CGCCTAACCCTAGGGACGG 61.496 68.421 35.38 27.59 44.58 4.79
114 115 2.138831 GCCTAACCCTAGGGACGGG 61.139 68.421 35.38 28.15 44.58 5.28
115 116 1.622499 CCTAACCCTAGGGACGGGA 59.378 63.158 35.38 12.60 44.90 5.14
116 117 0.758310 CCTAACCCTAGGGACGGGAC 60.758 65.000 35.38 0.00 44.90 4.46
117 118 0.032813 CTAACCCTAGGGACGGGACA 60.033 60.000 35.38 9.33 44.90 4.02
118 119 0.032813 TAACCCTAGGGACGGGACAG 60.033 60.000 35.38 4.44 44.90 3.51
119 120 1.807771 AACCCTAGGGACGGGACAGA 61.808 60.000 35.38 0.00 44.90 3.41
120 121 1.455959 CCCTAGGGACGGGACAGAG 60.456 68.421 24.99 0.00 44.90 3.35
121 122 1.455959 CCTAGGGACGGGACAGAGG 60.456 68.421 0.00 0.00 0.00 3.69
122 123 1.455959 CTAGGGACGGGACAGAGGG 60.456 68.421 0.00 0.00 0.00 4.30
123 124 2.930777 CTAGGGACGGGACAGAGGGG 62.931 70.000 0.00 0.00 0.00 4.79
131 132 4.779733 GACAGAGGGGGCGGGAGA 62.780 72.222 0.00 0.00 0.00 3.71
132 133 4.787280 ACAGAGGGGGCGGGAGAG 62.787 72.222 0.00 0.00 0.00 3.20
133 134 4.465446 CAGAGGGGGCGGGAGAGA 62.465 72.222 0.00 0.00 0.00 3.10
134 135 4.150454 AGAGGGGGCGGGAGAGAG 62.150 72.222 0.00 0.00 0.00 3.20
142 143 3.151022 CGGGAGAGAGGGCCTCAC 61.151 72.222 33.86 27.84 44.40 3.51
144 145 2.366570 GGAGAGAGGGCCTCACCT 59.633 66.667 33.86 27.95 45.63 4.00
145 146 1.306568 GGAGAGAGGGCCTCACCTT 60.307 63.158 33.86 14.75 45.63 3.50
146 147 1.334384 GGAGAGAGGGCCTCACCTTC 61.334 65.000 33.86 23.87 45.63 3.46
147 148 1.306568 AGAGAGGGCCTCACCTTCC 60.307 63.158 33.86 15.31 45.78 3.46
148 149 1.306568 GAGAGGGCCTCACCTTCCT 60.307 63.158 33.86 12.74 45.78 3.36
149 150 0.032017 GAGAGGGCCTCACCTTCCTA 60.032 60.000 33.86 0.00 45.78 2.94
150 151 0.031616 AGAGGGCCTCACCTTCCTAG 60.032 60.000 33.86 0.00 45.78 3.02
151 152 1.690985 AGGGCCTCACCTTCCTAGC 60.691 63.158 0.00 0.00 37.69 3.42
152 153 2.747443 GGGCCTCACCTTCCTAGCC 61.747 68.421 0.84 0.00 39.10 3.93
153 154 2.501610 GCCTCACCTTCCTAGCCG 59.498 66.667 0.00 0.00 0.00 5.52
154 155 3.095347 GCCTCACCTTCCTAGCCGG 62.095 68.421 0.00 0.00 0.00 6.13
155 156 2.435693 CCTCACCTTCCTAGCCGGG 61.436 68.421 2.18 0.00 0.00 5.73
156 157 1.381327 CTCACCTTCCTAGCCGGGA 60.381 63.158 2.18 0.00 0.00 5.14
157 158 0.760945 CTCACCTTCCTAGCCGGGAT 60.761 60.000 2.18 0.00 35.07 3.85
158 159 0.759436 TCACCTTCCTAGCCGGGATC 60.759 60.000 2.18 0.00 35.07 3.36
159 160 1.459730 ACCTTCCTAGCCGGGATCC 60.460 63.158 1.92 1.92 35.07 3.36
160 161 1.459539 CCTTCCTAGCCGGGATCCA 60.460 63.158 15.23 0.00 35.07 3.41
161 162 1.476007 CCTTCCTAGCCGGGATCCAG 61.476 65.000 15.23 9.92 35.07 3.86
162 163 2.105806 CTTCCTAGCCGGGATCCAGC 62.106 65.000 15.23 15.84 35.07 4.85
163 164 3.631046 CCTAGCCGGGATCCAGCC 61.631 72.222 19.46 3.47 0.00 4.85
164 165 3.996124 CTAGCCGGGATCCAGCCG 61.996 72.222 19.46 11.44 0.00 5.52
171 172 4.467084 GGATCCAGCCGCCGTTGA 62.467 66.667 6.95 0.00 0.00 3.18
172 173 2.892425 GATCCAGCCGCCGTTGAG 60.892 66.667 0.00 0.00 0.00 3.02
173 174 4.473520 ATCCAGCCGCCGTTGAGG 62.474 66.667 0.00 0.00 44.97 3.86
180 181 4.308458 CGCCGTTGAGGACCACCA 62.308 66.667 0.00 0.00 45.00 4.17
181 182 2.358737 GCCGTTGAGGACCACCAG 60.359 66.667 0.00 0.00 45.00 4.00
182 183 2.347490 CCGTTGAGGACCACCAGG 59.653 66.667 0.00 0.00 45.00 4.45
196 197 4.351938 CAGGTCCGCCGTCGTTGA 62.352 66.667 0.00 0.00 40.50 3.18
197 198 4.052229 AGGTCCGCCGTCGTTGAG 62.052 66.667 0.00 0.00 40.50 3.02
209 210 4.382320 GTTGAGCCACCCCGCGTA 62.382 66.667 4.92 0.00 0.00 4.42
210 211 3.627952 TTGAGCCACCCCGCGTAA 61.628 61.111 4.92 0.00 0.00 3.18
211 212 3.599285 TTGAGCCACCCCGCGTAAG 62.599 63.158 4.92 0.00 43.44 2.34
212 213 4.078516 GAGCCACCCCGCGTAAGT 62.079 66.667 4.92 0.00 41.68 2.24
213 214 4.078516 AGCCACCCCGCGTAAGTC 62.079 66.667 4.92 0.00 41.68 3.01
223 224 2.735478 CGTAAGTCGCCGTTGCCA 60.735 61.111 0.00 0.00 0.00 4.92
224 225 2.858158 GTAAGTCGCCGTTGCCAC 59.142 61.111 0.00 0.00 0.00 5.01
225 226 2.357760 TAAGTCGCCGTTGCCACC 60.358 61.111 0.00 0.00 0.00 4.61
231 232 4.025401 GCCGTTGCCACCGTCTTG 62.025 66.667 0.00 0.00 0.00 3.02
232 233 4.025401 CCGTTGCCACCGTCTTGC 62.025 66.667 0.00 0.00 0.00 4.01
233 234 4.368808 CGTTGCCACCGTCTTGCG 62.369 66.667 0.00 0.00 40.95 4.85
243 244 2.261671 GTCTTGCGGGCGAGAGAA 59.738 61.111 10.82 0.00 37.16 2.87
244 245 1.374252 GTCTTGCGGGCGAGAGAAA 60.374 57.895 10.82 0.00 37.16 2.52
245 246 1.079819 TCTTGCGGGCGAGAGAAAG 60.080 57.895 6.51 0.00 32.98 2.62
246 247 2.047274 TTGCGGGCGAGAGAAAGG 60.047 61.111 0.00 0.00 0.00 3.11
247 248 3.605749 TTGCGGGCGAGAGAAAGGG 62.606 63.158 0.00 0.00 0.00 3.95
248 249 3.771160 GCGGGCGAGAGAAAGGGA 61.771 66.667 0.00 0.00 0.00 4.20
249 250 2.978824 CGGGCGAGAGAAAGGGAA 59.021 61.111 0.00 0.00 0.00 3.97
250 251 1.448013 CGGGCGAGAGAAAGGGAAC 60.448 63.158 0.00 0.00 0.00 3.62
251 252 1.677552 GGGCGAGAGAAAGGGAACA 59.322 57.895 0.00 0.00 0.00 3.18
252 253 0.036306 GGGCGAGAGAAAGGGAACAA 59.964 55.000 0.00 0.00 0.00 2.83
253 254 1.443802 GGCGAGAGAAAGGGAACAAG 58.556 55.000 0.00 0.00 0.00 3.16
254 255 1.443802 GCGAGAGAAAGGGAACAAGG 58.556 55.000 0.00 0.00 0.00 3.61
255 256 1.946283 GCGAGAGAAAGGGAACAAGGG 60.946 57.143 0.00 0.00 0.00 3.95
256 257 1.827681 GAGAGAAAGGGAACAAGGGC 58.172 55.000 0.00 0.00 0.00 5.19
257 258 0.036875 AGAGAAAGGGAACAAGGGCG 59.963 55.000 0.00 0.00 0.00 6.13
258 259 0.036306 GAGAAAGGGAACAAGGGCGA 59.964 55.000 0.00 0.00 0.00 5.54
259 260 0.036875 AGAAAGGGAACAAGGGCGAG 59.963 55.000 0.00 0.00 0.00 5.03
260 261 1.587043 GAAAGGGAACAAGGGCGAGC 61.587 60.000 0.00 0.00 0.00 5.03
261 262 3.901797 AAGGGAACAAGGGCGAGCG 62.902 63.158 0.00 0.00 0.00 5.03
262 263 4.388499 GGGAACAAGGGCGAGCGA 62.388 66.667 0.00 0.00 0.00 4.93
263 264 2.358247 GGAACAAGGGCGAGCGAA 60.358 61.111 0.00 0.00 0.00 4.70
264 265 2.677979 GGAACAAGGGCGAGCGAAC 61.678 63.158 0.00 0.00 0.00 3.95
265 266 2.668550 AACAAGGGCGAGCGAACC 60.669 61.111 0.00 0.00 0.00 3.62
266 267 3.469863 AACAAGGGCGAGCGAACCA 62.470 57.895 0.00 0.00 0.00 3.67
267 268 2.436646 CAAGGGCGAGCGAACCAT 60.437 61.111 0.00 0.00 0.00 3.55
268 269 1.153449 CAAGGGCGAGCGAACCATA 60.153 57.895 0.00 0.00 0.00 2.74
269 270 0.742990 CAAGGGCGAGCGAACCATAA 60.743 55.000 0.00 0.00 0.00 1.90
270 271 0.743345 AAGGGCGAGCGAACCATAAC 60.743 55.000 0.00 0.00 0.00 1.89
271 272 2.522638 GGGCGAGCGAACCATAACG 61.523 63.158 0.00 0.00 0.00 3.18
272 273 1.517694 GGCGAGCGAACCATAACGA 60.518 57.895 0.00 0.00 0.00 3.85
273 274 1.480219 GGCGAGCGAACCATAACGAG 61.480 60.000 0.00 0.00 0.00 4.18
274 275 0.524816 GCGAGCGAACCATAACGAGA 60.525 55.000 0.00 0.00 0.00 4.04
275 276 1.864435 GCGAGCGAACCATAACGAGAT 60.864 52.381 0.00 0.00 0.00 2.75
276 277 2.044860 CGAGCGAACCATAACGAGATC 58.955 52.381 0.00 0.00 0.00 2.75
277 278 2.287069 CGAGCGAACCATAACGAGATCT 60.287 50.000 0.00 0.00 0.00 2.75
278 279 3.301706 GAGCGAACCATAACGAGATCTC 58.698 50.000 13.05 13.05 0.00 2.75
279 280 2.034812 AGCGAACCATAACGAGATCTCC 59.965 50.000 17.13 0.00 0.00 3.71
280 281 2.223735 GCGAACCATAACGAGATCTCCA 60.224 50.000 17.13 3.07 0.00 3.86
281 282 3.633235 CGAACCATAACGAGATCTCCAG 58.367 50.000 17.13 6.61 0.00 3.86
282 283 3.066900 CGAACCATAACGAGATCTCCAGT 59.933 47.826 17.13 7.27 0.00 4.00
283 284 4.440250 CGAACCATAACGAGATCTCCAGTT 60.440 45.833 17.13 16.99 0.00 3.16
284 285 4.657436 ACCATAACGAGATCTCCAGTTC 57.343 45.455 17.13 0.00 0.00 3.01
285 286 3.066900 ACCATAACGAGATCTCCAGTTCG 59.933 47.826 17.13 7.65 38.88 3.95
286 287 3.066900 CCATAACGAGATCTCCAGTTCGT 59.933 47.826 17.13 8.32 46.99 3.85
288 289 2.923605 ACGAGATCTCCAGTTCGTTC 57.076 50.000 17.13 0.00 42.99 3.95
289 290 1.130749 ACGAGATCTCCAGTTCGTTCG 59.869 52.381 17.13 4.73 42.99 3.95
290 291 1.130749 CGAGATCTCCAGTTCGTTCGT 59.869 52.381 17.13 0.00 0.00 3.85
291 292 2.520979 GAGATCTCCAGTTCGTTCGTG 58.479 52.381 12.00 0.00 0.00 4.35
292 293 1.202582 AGATCTCCAGTTCGTTCGTGG 59.797 52.381 0.00 0.00 0.00 4.94
293 294 0.966920 ATCTCCAGTTCGTTCGTGGT 59.033 50.000 0.00 0.00 32.73 4.16
294 295 0.313043 TCTCCAGTTCGTTCGTGGTC 59.687 55.000 0.00 0.00 32.73 4.02
295 296 0.031585 CTCCAGTTCGTTCGTGGTCA 59.968 55.000 0.00 0.00 32.73 4.02
296 297 0.460722 TCCAGTTCGTTCGTGGTCAA 59.539 50.000 0.00 0.00 32.73 3.18
297 298 1.069513 TCCAGTTCGTTCGTGGTCAAT 59.930 47.619 0.00 0.00 32.73 2.57
298 299 1.459592 CCAGTTCGTTCGTGGTCAATC 59.540 52.381 0.00 0.00 0.00 2.67
299 300 1.459592 CAGTTCGTTCGTGGTCAATCC 59.540 52.381 0.00 0.00 0.00 3.01
300 301 1.343465 AGTTCGTTCGTGGTCAATCCT 59.657 47.619 0.00 0.00 37.07 3.24
301 302 1.459592 GTTCGTTCGTGGTCAATCCTG 59.540 52.381 0.00 0.00 37.07 3.86
302 303 0.037697 TCGTTCGTGGTCAATCCTGG 60.038 55.000 0.00 0.00 37.07 4.45
303 304 1.019278 CGTTCGTGGTCAATCCTGGG 61.019 60.000 0.00 0.00 37.07 4.45
304 305 0.323629 GTTCGTGGTCAATCCTGGGA 59.676 55.000 0.00 0.00 37.07 4.37
305 306 0.613260 TTCGTGGTCAATCCTGGGAG 59.387 55.000 0.00 0.00 37.07 4.30
306 307 0.252057 TCGTGGTCAATCCTGGGAGA 60.252 55.000 0.00 0.00 37.07 3.71
307 308 0.176680 CGTGGTCAATCCTGGGAGAG 59.823 60.000 0.00 0.00 37.07 3.20
308 309 0.543749 GTGGTCAATCCTGGGAGAGG 59.456 60.000 0.00 0.00 44.45 3.69
309 310 0.621571 TGGTCAATCCTGGGAGAGGG 60.622 60.000 0.00 0.00 43.06 4.30
310 311 1.348775 GGTCAATCCTGGGAGAGGGG 61.349 65.000 0.00 0.00 43.06 4.79
311 312 0.621862 GTCAATCCTGGGAGAGGGGT 60.622 60.000 0.00 0.00 43.06 4.95
312 313 1.023719 TCAATCCTGGGAGAGGGGTA 58.976 55.000 0.00 0.00 43.06 3.69
313 314 1.585592 TCAATCCTGGGAGAGGGGTAT 59.414 52.381 0.00 0.00 43.06 2.73
314 315 2.021042 TCAATCCTGGGAGAGGGGTATT 60.021 50.000 0.00 0.00 43.06 1.89
315 316 2.785857 CAATCCTGGGAGAGGGGTATTT 59.214 50.000 0.00 0.00 43.06 1.40
316 317 2.680439 TCCTGGGAGAGGGGTATTTT 57.320 50.000 0.00 0.00 43.06 1.82
317 318 2.488836 TCCTGGGAGAGGGGTATTTTC 58.511 52.381 0.00 0.00 43.06 2.29
318 319 1.141053 CCTGGGAGAGGGGTATTTTCG 59.859 57.143 0.00 0.00 38.36 3.46
319 320 2.116238 CTGGGAGAGGGGTATTTTCGA 58.884 52.381 0.00 0.00 0.00 3.71
320 321 1.835531 TGGGAGAGGGGTATTTTCGAC 59.164 52.381 0.00 0.00 0.00 4.20
321 322 2.117051 GGGAGAGGGGTATTTTCGACT 58.883 52.381 0.00 0.00 0.00 4.18
322 323 2.504585 GGGAGAGGGGTATTTTCGACTT 59.495 50.000 0.00 0.00 0.00 3.01
323 324 3.054582 GGGAGAGGGGTATTTTCGACTTT 60.055 47.826 0.00 0.00 0.00 2.66
324 325 4.567116 GGGAGAGGGGTATTTTCGACTTTT 60.567 45.833 0.00 0.00 0.00 2.27
325 326 4.634883 GGAGAGGGGTATTTTCGACTTTTC 59.365 45.833 0.00 0.00 0.00 2.29
326 327 5.489249 GAGAGGGGTATTTTCGACTTTTCT 58.511 41.667 0.00 0.00 0.00 2.52
327 328 5.877491 AGAGGGGTATTTTCGACTTTTCTT 58.123 37.500 0.00 0.00 0.00 2.52
328 329 5.705905 AGAGGGGTATTTTCGACTTTTCTTG 59.294 40.000 0.00 0.00 0.00 3.02
329 330 5.382616 AGGGGTATTTTCGACTTTTCTTGT 58.617 37.500 0.00 0.00 0.00 3.16
330 331 5.240844 AGGGGTATTTTCGACTTTTCTTGTG 59.759 40.000 0.00 0.00 0.00 3.33
331 332 5.458015 GGGTATTTTCGACTTTTCTTGTGG 58.542 41.667 0.00 0.00 0.00 4.17
332 333 5.458015 GGTATTTTCGACTTTTCTTGTGGG 58.542 41.667 0.00 0.00 0.00 4.61
333 334 5.239963 GGTATTTTCGACTTTTCTTGTGGGA 59.760 40.000 0.00 0.00 0.00 4.37
334 335 4.625972 TTTTCGACTTTTCTTGTGGGAC 57.374 40.909 0.00 0.00 0.00 4.46
335 336 2.249844 TCGACTTTTCTTGTGGGACC 57.750 50.000 0.00 0.00 0.00 4.46
336 337 1.202722 TCGACTTTTCTTGTGGGACCC 60.203 52.381 2.45 2.45 0.00 4.46
337 338 1.476110 CGACTTTTCTTGTGGGACCCA 60.476 52.381 9.95 9.95 0.00 4.51
338 339 2.230660 GACTTTTCTTGTGGGACCCAG 58.769 52.381 15.52 2.01 32.34 4.45
339 340 1.569072 ACTTTTCTTGTGGGACCCAGT 59.431 47.619 15.52 2.20 32.34 4.00
340 341 2.230660 CTTTTCTTGTGGGACCCAGTC 58.769 52.381 15.52 3.37 32.34 3.51
341 342 0.107831 TTTCTTGTGGGACCCAGTCG 59.892 55.000 15.52 4.92 32.34 4.18
342 343 0.761323 TTCTTGTGGGACCCAGTCGA 60.761 55.000 15.52 7.49 32.34 4.20
343 344 1.004918 CTTGTGGGACCCAGTCGAC 60.005 63.158 15.52 7.70 32.34 4.20
344 345 1.754380 CTTGTGGGACCCAGTCGACA 61.754 60.000 15.52 4.85 32.34 4.35
345 346 1.754380 TTGTGGGACCCAGTCGACAG 61.754 60.000 15.52 10.04 32.34 3.51
346 347 1.906824 GTGGGACCCAGTCGACAGA 60.907 63.158 15.52 0.00 32.34 3.41
347 348 1.606601 TGGGACCCAGTCGACAGAG 60.607 63.158 19.50 2.53 32.65 3.35
348 349 2.352032 GGGACCCAGTCGACAGAGG 61.352 68.421 19.50 16.76 32.65 3.69
349 350 2.352032 GGACCCAGTCGACAGAGGG 61.352 68.421 28.64 28.64 46.96 4.30
350 351 2.997897 ACCCAGTCGACAGAGGGC 60.998 66.667 29.61 0.08 45.45 5.19
351 352 2.997315 CCCAGTCGACAGAGGGCA 60.997 66.667 22.49 0.00 33.91 5.36
352 353 2.583441 CCCAGTCGACAGAGGGCAA 61.583 63.158 22.49 0.00 33.91 4.52
353 354 1.371183 CCAGTCGACAGAGGGCAAA 59.629 57.895 19.50 0.00 0.00 3.68
354 355 0.250295 CCAGTCGACAGAGGGCAAAA 60.250 55.000 19.50 0.00 0.00 2.44
355 356 1.611673 CCAGTCGACAGAGGGCAAAAT 60.612 52.381 19.50 0.00 0.00 1.82
356 357 2.354704 CCAGTCGACAGAGGGCAAAATA 60.355 50.000 19.50 0.00 0.00 1.40
357 358 3.334691 CAGTCGACAGAGGGCAAAATAA 58.665 45.455 19.50 0.00 0.00 1.40
358 359 3.125316 CAGTCGACAGAGGGCAAAATAAC 59.875 47.826 19.50 0.00 0.00 1.89
359 360 3.071479 GTCGACAGAGGGCAAAATAACA 58.929 45.455 11.55 0.00 0.00 2.41
360 361 3.500680 GTCGACAGAGGGCAAAATAACAA 59.499 43.478 11.55 0.00 0.00 2.83
361 362 4.023536 GTCGACAGAGGGCAAAATAACAAA 60.024 41.667 11.55 0.00 0.00 2.83
362 363 4.215399 TCGACAGAGGGCAAAATAACAAAG 59.785 41.667 0.00 0.00 0.00 2.77
363 364 4.023193 CGACAGAGGGCAAAATAACAAAGT 60.023 41.667 0.00 0.00 0.00 2.66
364 365 5.507315 CGACAGAGGGCAAAATAACAAAGTT 60.507 40.000 0.00 0.00 0.00 2.66
365 366 6.233905 ACAGAGGGCAAAATAACAAAGTTT 57.766 33.333 0.00 0.00 0.00 2.66
366 367 6.280643 ACAGAGGGCAAAATAACAAAGTTTC 58.719 36.000 0.00 0.00 0.00 2.78
367 368 6.127196 ACAGAGGGCAAAATAACAAAGTTTCA 60.127 34.615 0.00 0.00 0.00 2.69
368 369 6.930722 CAGAGGGCAAAATAACAAAGTTTCAT 59.069 34.615 0.00 0.00 0.00 2.57
369 370 6.930722 AGAGGGCAAAATAACAAAGTTTCATG 59.069 34.615 0.00 0.00 0.00 3.07
370 371 6.591001 AGGGCAAAATAACAAAGTTTCATGT 58.409 32.000 0.00 0.00 0.00 3.21
371 372 7.731054 AGGGCAAAATAACAAAGTTTCATGTA 58.269 30.769 0.00 0.00 0.00 2.29
372 373 8.207545 AGGGCAAAATAACAAAGTTTCATGTAA 58.792 29.630 0.00 0.00 0.00 2.41
373 374 8.279800 GGGCAAAATAACAAAGTTTCATGTAAC 58.720 33.333 7.09 7.09 0.00 2.50
374 375 9.040939 GGCAAAATAACAAAGTTTCATGTAACT 57.959 29.630 11.56 11.56 39.97 2.24
375 376 9.848172 GCAAAATAACAAAGTTTCATGTAACTG 57.152 29.630 17.24 9.97 38.33 3.16
378 379 9.528018 AAATAACAAAGTTTCATGTAACTGGTG 57.472 29.630 17.24 18.46 38.33 4.17
379 380 6.524101 AACAAAGTTTCATGTAACTGGTGT 57.476 33.333 17.24 18.99 38.33 4.16
380 381 6.131544 ACAAAGTTTCATGTAACTGGTGTC 57.868 37.500 17.24 0.00 38.33 3.67
381 382 5.650266 ACAAAGTTTCATGTAACTGGTGTCA 59.350 36.000 17.24 0.00 38.33 3.58
382 383 6.321181 ACAAAGTTTCATGTAACTGGTGTCAT 59.679 34.615 17.24 0.00 38.33 3.06
383 384 6.959639 AAGTTTCATGTAACTGGTGTCATT 57.040 33.333 17.24 0.00 38.33 2.57
384 385 8.349245 CAAAGTTTCATGTAACTGGTGTCATTA 58.651 33.333 17.24 0.00 38.33 1.90
385 386 7.672983 AGTTTCATGTAACTGGTGTCATTAG 57.327 36.000 16.00 0.00 37.00 1.73
386 387 7.450074 AGTTTCATGTAACTGGTGTCATTAGA 58.550 34.615 16.00 0.00 37.00 2.10
387 388 8.103305 AGTTTCATGTAACTGGTGTCATTAGAT 58.897 33.333 16.00 0.00 37.00 1.98
388 389 8.391106 GTTTCATGTAACTGGTGTCATTAGATC 58.609 37.037 7.87 0.00 0.00 2.75
389 390 7.181569 TCATGTAACTGGTGTCATTAGATCA 57.818 36.000 0.00 0.00 0.00 2.92
390 391 7.619965 TCATGTAACTGGTGTCATTAGATCAA 58.380 34.615 0.00 0.00 0.00 2.57
391 392 8.267183 TCATGTAACTGGTGTCATTAGATCAAT 58.733 33.333 0.00 0.00 0.00 2.57
392 393 8.896744 CATGTAACTGGTGTCATTAGATCAATT 58.103 33.333 0.00 0.00 0.00 2.32
394 395 9.378551 TGTAACTGGTGTCATTAGATCAATTAC 57.621 33.333 0.00 0.00 0.00 1.89
395 396 9.378551 GTAACTGGTGTCATTAGATCAATTACA 57.621 33.333 0.00 0.00 30.09 2.41
396 397 8.862325 AACTGGTGTCATTAGATCAATTACAA 57.138 30.769 0.00 0.00 33.60 2.41
397 398 8.498054 ACTGGTGTCATTAGATCAATTACAAG 57.502 34.615 0.00 0.48 33.60 3.16
398 399 7.554118 ACTGGTGTCATTAGATCAATTACAAGG 59.446 37.037 0.00 0.00 33.60 3.61
399 400 7.402054 TGGTGTCATTAGATCAATTACAAGGT 58.598 34.615 0.00 0.00 33.60 3.50
400 401 8.544622 TGGTGTCATTAGATCAATTACAAGGTA 58.455 33.333 0.00 0.00 33.60 3.08
401 402 9.391006 GGTGTCATTAGATCAATTACAAGGTAA 57.609 33.333 0.00 0.00 33.60 2.85
403 404 9.613428 TGTCATTAGATCAATTACAAGGTAAGG 57.387 33.333 0.00 0.00 29.73 2.69
404 405 9.057089 GTCATTAGATCAATTACAAGGTAAGGG 57.943 37.037 0.00 0.00 0.00 3.95
405 406 8.998814 TCATTAGATCAATTACAAGGTAAGGGA 58.001 33.333 0.00 0.00 0.00 4.20
406 407 9.799106 CATTAGATCAATTACAAGGTAAGGGAT 57.201 33.333 0.00 0.00 0.00 3.85
407 408 9.799106 ATTAGATCAATTACAAGGTAAGGGATG 57.201 33.333 0.00 1.32 0.00 3.51
408 409 6.605119 AGATCAATTACAAGGTAAGGGATGG 58.395 40.000 0.00 0.00 0.00 3.51
409 410 4.532834 TCAATTACAAGGTAAGGGATGGC 58.467 43.478 0.00 0.00 0.00 4.40
410 411 4.017958 TCAATTACAAGGTAAGGGATGGCA 60.018 41.667 0.00 0.00 0.00 4.92
411 412 4.601406 ATTACAAGGTAAGGGATGGCAA 57.399 40.909 0.00 0.00 0.00 4.52
412 413 2.990740 ACAAGGTAAGGGATGGCAAA 57.009 45.000 0.00 0.00 0.00 3.68
413 414 3.473113 ACAAGGTAAGGGATGGCAAAT 57.527 42.857 0.00 0.00 0.00 2.32
414 415 3.790126 ACAAGGTAAGGGATGGCAAATT 58.210 40.909 0.00 0.00 0.00 1.82
415 416 4.941713 ACAAGGTAAGGGATGGCAAATTA 58.058 39.130 0.00 0.00 0.00 1.40
416 417 5.528337 ACAAGGTAAGGGATGGCAAATTAT 58.472 37.500 0.00 0.00 0.00 1.28
417 418 5.598417 ACAAGGTAAGGGATGGCAAATTATC 59.402 40.000 0.00 0.00 0.00 1.75
418 419 5.402054 AGGTAAGGGATGGCAAATTATCA 57.598 39.130 0.00 0.00 0.00 2.15
419 420 5.776358 AGGTAAGGGATGGCAAATTATCAA 58.224 37.500 0.00 0.00 0.00 2.57
420 421 6.201591 AGGTAAGGGATGGCAAATTATCAAA 58.798 36.000 0.00 0.00 0.00 2.69
421 422 6.324770 AGGTAAGGGATGGCAAATTATCAAAG 59.675 38.462 0.00 0.00 0.00 2.77
422 423 6.323739 GGTAAGGGATGGCAAATTATCAAAGA 59.676 38.462 0.00 0.00 0.00 2.52
423 424 6.475596 AAGGGATGGCAAATTATCAAAGAG 57.524 37.500 0.00 0.00 0.00 2.85
424 425 4.343239 AGGGATGGCAAATTATCAAAGAGC 59.657 41.667 0.00 0.00 0.00 4.09
425 426 4.099881 GGGATGGCAAATTATCAAAGAGCA 59.900 41.667 0.00 0.00 0.00 4.26
426 427 5.395546 GGGATGGCAAATTATCAAAGAGCAA 60.396 40.000 0.00 0.00 0.00 3.91
427 428 6.108015 GGATGGCAAATTATCAAAGAGCAAA 58.892 36.000 0.00 0.00 0.00 3.68
428 429 6.257193 GGATGGCAAATTATCAAAGAGCAAAG 59.743 38.462 0.00 0.00 0.00 2.77
429 430 6.343716 TGGCAAATTATCAAAGAGCAAAGA 57.656 33.333 0.00 0.00 0.00 2.52
430 431 6.757237 TGGCAAATTATCAAAGAGCAAAGAA 58.243 32.000 0.00 0.00 0.00 2.52
431 432 7.215789 TGGCAAATTATCAAAGAGCAAAGAAA 58.784 30.769 0.00 0.00 0.00 2.52
432 433 7.385752 TGGCAAATTATCAAAGAGCAAAGAAAG 59.614 33.333 0.00 0.00 0.00 2.62
433 434 7.386025 GGCAAATTATCAAAGAGCAAAGAAAGT 59.614 33.333 0.00 0.00 0.00 2.66
434 435 8.219105 GCAAATTATCAAAGAGCAAAGAAAGTG 58.781 33.333 0.00 0.00 0.00 3.16
435 436 8.706035 CAAATTATCAAAGAGCAAAGAAAGTGG 58.294 33.333 0.00 0.00 0.00 4.00
436 437 6.959639 TTATCAAAGAGCAAAGAAAGTGGT 57.040 33.333 0.00 0.00 0.00 4.16
437 438 4.637483 TCAAAGAGCAAAGAAAGTGGTG 57.363 40.909 0.00 0.00 0.00 4.17
438 439 3.381272 TCAAAGAGCAAAGAAAGTGGTGG 59.619 43.478 0.00 0.00 0.00 4.61
439 440 1.322442 AGAGCAAAGAAAGTGGTGGC 58.678 50.000 0.00 0.00 0.00 5.01
440 441 1.032014 GAGCAAAGAAAGTGGTGGCA 58.968 50.000 0.00 0.00 0.00 4.92
441 442 1.408702 GAGCAAAGAAAGTGGTGGCAA 59.591 47.619 0.00 0.00 0.00 4.52
442 443 1.830477 AGCAAAGAAAGTGGTGGCAAA 59.170 42.857 0.00 0.00 0.00 3.68
443 444 2.435437 AGCAAAGAAAGTGGTGGCAAAT 59.565 40.909 0.00 0.00 0.00 2.32
444 445 3.640967 AGCAAAGAAAGTGGTGGCAAATA 59.359 39.130 0.00 0.00 0.00 1.40
445 446 4.100808 AGCAAAGAAAGTGGTGGCAAATAA 59.899 37.500 0.00 0.00 0.00 1.40
446 447 4.996758 GCAAAGAAAGTGGTGGCAAATAAT 59.003 37.500 0.00 0.00 0.00 1.28
447 448 5.120674 GCAAAGAAAGTGGTGGCAAATAATC 59.879 40.000 0.00 0.00 0.00 1.75
448 449 6.222389 CAAAGAAAGTGGTGGCAAATAATCA 58.778 36.000 0.00 0.00 0.00 2.57
449 450 6.418057 AAGAAAGTGGTGGCAAATAATCAA 57.582 33.333 0.00 0.00 0.00 2.57
450 451 6.418057 AGAAAGTGGTGGCAAATAATCAAA 57.582 33.333 0.00 0.00 0.00 2.69
451 452 7.008021 AGAAAGTGGTGGCAAATAATCAAAT 57.992 32.000 0.00 0.00 0.00 2.32
452 453 7.452562 AGAAAGTGGTGGCAAATAATCAAATT 58.547 30.769 0.00 0.00 0.00 1.82
453 454 7.603784 AGAAAGTGGTGGCAAATAATCAAATTC 59.396 33.333 0.00 0.00 0.00 2.17
454 455 5.733676 AGTGGTGGCAAATAATCAAATTCC 58.266 37.500 0.00 0.00 0.00 3.01
455 456 4.875536 GTGGTGGCAAATAATCAAATTCCC 59.124 41.667 0.00 0.00 0.00 3.97
456 457 4.080638 TGGTGGCAAATAATCAAATTCCCC 60.081 41.667 0.00 0.00 0.00 4.81
468 469 0.469892 AATTCCCCGATCCAATGGCC 60.470 55.000 0.00 0.00 0.00 5.36
509 511 1.609208 AACAACATCCACTGGCTGAC 58.391 50.000 5.90 0.00 0.00 3.51
530 532 2.094026 CAGTGAACCATCGGATCTGACA 60.094 50.000 6.33 0.00 0.00 3.58
694 708 1.227853 ACCCAAGTCACCAGTTCGC 60.228 57.895 0.00 0.00 0.00 4.70
1423 1821 1.391157 AATGTGCTGGCGTTGTTGGT 61.391 50.000 0.00 0.00 0.00 3.67
1557 1957 7.217200 AGAGCAAACAGAATCAACTTACTGTA 58.783 34.615 0.00 0.00 41.73 2.74
1558 1958 7.880195 AGAGCAAACAGAATCAACTTACTGTAT 59.120 33.333 0.00 0.00 41.73 2.29
1561 1961 8.717821 GCAAACAGAATCAACTTACTGTATACA 58.282 33.333 5.25 5.25 41.73 2.29
1600 2000 6.299141 ACTATTGAGTTGAGTGGTGAATTGT 58.701 36.000 0.00 0.00 28.61 2.71
1613 2013 3.004629 GGTGAATTGTGACACTTGATGCA 59.995 43.478 7.20 0.00 37.22 3.96
1739 2140 5.669164 ACATTGGTGGTTTGTTGTAAAGT 57.331 34.783 0.00 0.00 0.00 2.66
1744 2145 6.287589 TGGTGGTTTGTTGTAAAGTCATTT 57.712 33.333 0.00 0.00 0.00 2.32
1821 2225 3.076621 GGCACACTCATCAGTTCATGAA 58.923 45.455 3.38 3.38 42.53 2.57
1841 2245 5.841810 TGAAAAGTTGACAACCAATCCATC 58.158 37.500 14.72 5.14 37.08 3.51
1844 2248 3.690460 AGTTGACAACCAATCCATCTCC 58.310 45.455 14.72 0.00 37.08 3.71
1846 2250 4.082125 GTTGACAACCAATCCATCTCCTT 58.918 43.478 7.10 0.00 37.08 3.36
1850 2254 4.082125 ACAACCAATCCATCTCCTTTGTC 58.918 43.478 0.00 0.00 0.00 3.18
1851 2255 2.991250 ACCAATCCATCTCCTTTGTCG 58.009 47.619 0.00 0.00 0.00 4.35
1852 2256 2.305927 ACCAATCCATCTCCTTTGTCGT 59.694 45.455 0.00 0.00 0.00 4.34
1853 2257 2.679837 CCAATCCATCTCCTTTGTCGTG 59.320 50.000 0.00 0.00 0.00 4.35
1854 2258 2.679837 CAATCCATCTCCTTTGTCGTGG 59.320 50.000 0.00 0.00 0.00 4.94
1903 2307 5.957798 ACTTATGATTGGCTCATGTTTGTG 58.042 37.500 0.00 0.00 44.48 3.33
1907 2311 1.619654 TTGGCTCATGTTTGTGGGAG 58.380 50.000 0.00 0.00 0.00 4.30
1940 2344 5.736813 ACTACCGGCTGTTTGTATTTGATA 58.263 37.500 0.00 0.00 0.00 2.15
1948 2352 6.770785 GGCTGTTTGTATTTGATATCTACCCA 59.229 38.462 3.98 0.00 0.00 4.51
2139 2543 4.919774 TGGATGTTCTACCTGCCTTTTA 57.080 40.909 0.00 0.00 0.00 1.52
2452 2864 3.628942 TGTCAGCACTGGATTTATGCATC 59.371 43.478 0.19 0.00 41.97 3.91
2666 3085 4.153117 ACTTCTCGAAAATGCACTAGCTTG 59.847 41.667 0.00 0.00 42.74 4.01
2752 3171 7.160049 TCATGGATATTGAGAGAGAAAGATGC 58.840 38.462 0.00 0.00 0.00 3.91
3168 3591 2.134346 TGAAGAAATTTTGCAAGCGGC 58.866 42.857 0.00 0.00 45.13 6.53
3211 3634 5.420725 TCCAGCAATAGTGTGTCTTGTAT 57.579 39.130 0.00 0.00 0.00 2.29
3337 3760 2.296471 TCTCCTTCGTGACAAGAGTTCC 59.704 50.000 0.00 0.00 0.00 3.62
3716 4141 2.877300 GCTCCTCAAGTTTCAGATGGCA 60.877 50.000 0.00 0.00 0.00 4.92
3793 4218 8.821686 ATGTTCACAGGTATGGATCAAATAAA 57.178 30.769 0.00 0.00 0.00 1.40
3799 4224 8.477256 CACAGGTATGGATCAAATAAATGGTTT 58.523 33.333 0.00 0.00 0.00 3.27
3811 4236 8.214364 TCAAATAAATGGTTTTAGCCCAAACTT 58.786 29.630 7.96 0.00 36.93 2.66
3843 4268 7.010091 GTCCAAAGATCATTGAACGTTTTTGTT 59.990 33.333 12.14 0.00 31.84 2.83
3955 4380 5.361571 TGCGTAGTTATGATTCCTCCAGTAA 59.638 40.000 0.00 0.00 0.00 2.24
3972 4397 7.711339 CCTCCAGTAAGAATGACCTACAAATAC 59.289 40.741 0.00 0.00 0.00 1.89
4056 4670 1.699634 AGTGACACAGGTAAGGTGCAT 59.300 47.619 8.59 0.00 39.87 3.96
4100 4714 7.122799 GGCCCATCTTATTATTTTACTCCATCC 59.877 40.741 0.00 0.00 0.00 3.51
4101 4715 7.148239 GCCCATCTTATTATTTTACTCCATCCG 60.148 40.741 0.00 0.00 0.00 4.18
4159 6209 5.290493 ACTACTCAATCTGTTGTGGTTCA 57.710 39.130 0.00 0.00 36.69 3.18
4188 6238 2.189594 TGTCCCAGTCAATCTTGCAG 57.810 50.000 0.00 0.00 0.00 4.41
4406 6466 0.383949 ATTCGTGCAAACAAAGCCGT 59.616 45.000 0.00 0.00 0.00 5.68
4414 6474 3.986572 TGCAAACAAAGCCGTATTTCATG 59.013 39.130 0.00 0.00 0.00 3.07
4503 6669 0.905357 ATCAAAGCGGTGCTAGTCCT 59.095 50.000 0.00 0.00 38.25 3.85
5321 7766 3.559171 CCATCTCCTTCTTTTGGTCCGAA 60.559 47.826 0.00 0.00 0.00 4.30
5333 7779 2.599281 TCCGAAGTCAGCCCGTCA 60.599 61.111 0.00 0.00 0.00 4.35
5432 7964 2.624636 CCGGGGCATCGGTTTATATAC 58.375 52.381 9.86 0.00 44.60 1.47
5668 8239 2.328099 GGAGTGGCGCTGACCAAAG 61.328 63.158 4.71 0.00 42.70 2.77
5676 8259 2.099062 CTGACCAAAGATGCGCGC 59.901 61.111 27.26 27.26 0.00 6.86
5678 8261 4.520846 GACCAAAGATGCGCGCGG 62.521 66.667 33.06 22.06 0.00 6.46
5681 8264 4.817063 CAAAGATGCGCGCGGGTG 62.817 66.667 33.06 15.54 0.00 4.61
5988 9034 1.234821 GTTTTGTCATGGAGGTCGCA 58.765 50.000 0.00 0.00 0.00 5.10
5993 9039 0.392998 GTCATGGAGGTCGCACCATT 60.393 55.000 7.86 0.00 43.30 3.16
6382 9428 2.522185 ACTGAAATTGTGGCAGCATCT 58.478 42.857 0.00 0.00 33.03 2.90
6644 9691 2.562298 TGCATGTTCCAGTTTTCCCATC 59.438 45.455 0.00 0.00 0.00 3.51
6678 9735 1.593070 CGTGCTAATTGCTCATGTCGC 60.593 52.381 0.00 0.00 43.37 5.19
6701 9758 7.936847 TCGCATTTTACCCTTATGATTCTGTAT 59.063 33.333 0.00 0.00 0.00 2.29
6710 9767 7.071698 ACCCTTATGATTCTGTATGACAGTGAT 59.928 37.037 0.00 2.98 46.03 3.06
6726 9783 6.112927 ACAGTGATGGGTTTTAATTGCAAT 57.887 33.333 5.99 5.99 0.00 3.56
6727 9784 6.532826 ACAGTGATGGGTTTTAATTGCAATT 58.467 32.000 26.72 26.72 0.00 2.32
6728 9785 6.997476 ACAGTGATGGGTTTTAATTGCAATTT 59.003 30.769 28.45 13.50 0.00 1.82
6729 9786 7.501892 ACAGTGATGGGTTTTAATTGCAATTTT 59.498 29.630 28.45 10.22 0.00 1.82
6928 9985 5.250543 TGGTGGAGATGGACAGAAAAATCTA 59.749 40.000 0.00 0.00 29.59 1.98
7012 10069 0.320050 TTTTTCTCGGGCAAATGGGC 59.680 50.000 0.00 0.00 42.44 5.36
7075 10132 3.820467 CCCACACTCAGCAAATGTTTCTA 59.180 43.478 0.00 0.00 0.00 2.10
7194 10251 4.678256 TCCAGTCTCCAGTCTTTCAGTAT 58.322 43.478 0.00 0.00 0.00 2.12
7562 10627 3.064545 GCTTAGTTTATCTGTGGCAGCAG 59.935 47.826 9.81 9.81 37.81 4.24
7563 10628 2.867109 AGTTTATCTGTGGCAGCAGT 57.133 45.000 14.00 6.99 37.70 4.40
7587 10652 3.820777 TTGTTTTGTTTTGCCAACAGC 57.179 38.095 0.00 0.00 44.14 4.40
7588 10653 2.079925 TGTTTTGTTTTGCCAACAGCC 58.920 42.857 0.00 0.00 42.71 4.85
7589 10654 1.061857 GTTTTGTTTTGCCAACAGCCG 59.938 47.619 0.00 0.00 42.71 5.52
7660 10725 5.223449 AGTTGGGGTATATTGACCATACG 57.777 43.478 0.00 0.00 41.73 3.06
7713 10778 2.365941 GACCCTACACCCTAGCATTCTC 59.634 54.545 0.00 0.00 0.00 2.87
7714 10779 2.292918 ACCCTACACCCTAGCATTCTCA 60.293 50.000 0.00 0.00 0.00 3.27
7715 10780 2.975489 CCCTACACCCTAGCATTCTCAT 59.025 50.000 0.00 0.00 0.00 2.90
7716 10781 3.007398 CCCTACACCCTAGCATTCTCATC 59.993 52.174 0.00 0.00 0.00 2.92
7717 10782 3.643320 CCTACACCCTAGCATTCTCATCA 59.357 47.826 0.00 0.00 0.00 3.07
7748 10813 3.340814 ACATGCAGTTAGGTTCCTCAG 57.659 47.619 0.00 0.00 0.00 3.35
8022 12011 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
8109 12104 5.185828 TGACAATCCATATGATCCTCTACCG 59.814 44.000 3.65 0.00 31.61 4.02
8216 12213 8.563123 CAATCATGCAGATATCTAAATCCTGT 57.437 34.615 4.54 0.00 35.39 4.00
8633 12640 3.000727 CCGTATTCTTTCAGGTGTGGAC 58.999 50.000 0.00 0.00 0.00 4.02
8639 12646 1.003233 CTTTCAGGTGTGGACCCCTAC 59.997 57.143 0.00 0.00 44.40 3.18
8804 12811 7.175641 CCAGCATATAGTTTTGGCTTAGCTTAT 59.824 37.037 3.59 0.00 31.30 1.73
9206 13213 4.280677 TGCGAACCAAATCCTCTTTTGAAT 59.719 37.500 0.00 0.00 38.58 2.57
9373 13381 2.209690 TAACAAAGTAGGGCCCAAGC 57.790 50.000 27.56 13.62 38.76 4.01
9411 13419 9.972106 AGAGATAGGAAAAACTCAGAAATTGAT 57.028 29.630 0.00 0.00 34.68 2.57
9492 13500 5.803461 CACAGCAGGAAATACATGAATTGTG 59.197 40.000 0.00 0.00 39.48 3.33
9596 13638 4.365514 TTCCTTTGGTTAGAGCATGACA 57.634 40.909 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.461135 CTGCCCAAGTTGTTGTTGCT 59.539 50.000 1.45 0.00 33.07 3.91
1 2 1.153597 GCTGCCCAAGTTGTTGTTGC 61.154 55.000 1.45 0.00 32.69 4.17
3 4 1.069049 GATGCTGCCCAAGTTGTTGTT 59.931 47.619 1.45 0.00 30.95 2.83
4 5 0.675633 GATGCTGCCCAAGTTGTTGT 59.324 50.000 1.45 0.00 30.95 3.32
5 6 0.675083 TGATGCTGCCCAAGTTGTTG 59.325 50.000 1.45 0.00 0.00 3.33
6 7 1.069049 GTTGATGCTGCCCAAGTTGTT 59.931 47.619 1.45 0.00 0.00 2.83
7 8 0.675633 GTTGATGCTGCCCAAGTTGT 59.324 50.000 1.45 0.00 0.00 3.32
8 9 0.387622 CGTTGATGCTGCCCAAGTTG 60.388 55.000 0.00 0.00 0.00 3.16
9 10 1.526575 CCGTTGATGCTGCCCAAGTT 61.527 55.000 0.00 0.00 0.00 2.66
10 11 1.973281 CCGTTGATGCTGCCCAAGT 60.973 57.895 0.00 0.00 0.00 3.16
11 12 1.526575 AACCGTTGATGCTGCCCAAG 61.527 55.000 0.00 0.00 0.00 3.61
12 13 1.523154 GAACCGTTGATGCTGCCCAA 61.523 55.000 0.00 0.00 0.00 4.12
13 14 1.971167 GAACCGTTGATGCTGCCCA 60.971 57.895 0.00 0.00 0.00 5.36
14 15 1.926511 CTGAACCGTTGATGCTGCCC 61.927 60.000 0.00 0.00 0.00 5.36
15 16 0.955428 TCTGAACCGTTGATGCTGCC 60.955 55.000 0.00 0.00 0.00 4.85
16 17 0.874390 TTCTGAACCGTTGATGCTGC 59.126 50.000 0.00 0.00 0.00 5.25
17 18 3.495193 CAATTCTGAACCGTTGATGCTG 58.505 45.455 0.00 0.00 0.00 4.41
18 19 2.489329 CCAATTCTGAACCGTTGATGCT 59.511 45.455 4.27 0.00 0.00 3.79
19 20 2.415893 CCCAATTCTGAACCGTTGATGC 60.416 50.000 4.27 0.00 0.00 3.91
20 21 3.081061 TCCCAATTCTGAACCGTTGATG 58.919 45.455 4.27 0.00 0.00 3.07
21 22 3.347216 CTCCCAATTCTGAACCGTTGAT 58.653 45.455 4.27 0.00 0.00 2.57
22 23 2.778299 CTCCCAATTCTGAACCGTTGA 58.222 47.619 4.27 0.00 0.00 3.18
23 24 1.200020 GCTCCCAATTCTGAACCGTTG 59.800 52.381 0.00 0.00 0.00 4.10
24 25 1.202879 TGCTCCCAATTCTGAACCGTT 60.203 47.619 0.00 0.00 0.00 4.44
25 26 0.400213 TGCTCCCAATTCTGAACCGT 59.600 50.000 0.00 0.00 0.00 4.83
26 27 1.089920 CTGCTCCCAATTCTGAACCG 58.910 55.000 0.00 0.00 0.00 4.44
27 28 0.813821 GCTGCTCCCAATTCTGAACC 59.186 55.000 0.00 0.00 0.00 3.62
28 29 1.471684 CTGCTGCTCCCAATTCTGAAC 59.528 52.381 0.00 0.00 0.00 3.18
29 30 1.830279 CTGCTGCTCCCAATTCTGAA 58.170 50.000 0.00 0.00 0.00 3.02
30 31 0.679002 GCTGCTGCTCCCAATTCTGA 60.679 55.000 8.53 0.00 36.03 3.27
31 32 0.963856 TGCTGCTGCTCCCAATTCTG 60.964 55.000 17.00 0.00 40.48 3.02
32 33 0.251474 TTGCTGCTGCTCCCAATTCT 60.251 50.000 17.00 0.00 40.48 2.40
33 34 0.604578 TTTGCTGCTGCTCCCAATTC 59.395 50.000 17.00 0.00 40.48 2.17
34 35 1.001633 CTTTTGCTGCTGCTCCCAATT 59.998 47.619 17.00 0.00 40.48 2.32
35 36 0.606604 CTTTTGCTGCTGCTCCCAAT 59.393 50.000 17.00 0.00 40.48 3.16
36 37 2.043625 CTTTTGCTGCTGCTCCCAA 58.956 52.632 17.00 0.00 40.48 4.12
37 38 2.567497 GCTTTTGCTGCTGCTCCCA 61.567 57.895 17.00 0.00 43.35 4.37
38 39 2.260743 GCTTTTGCTGCTGCTCCC 59.739 61.111 17.00 0.00 43.35 4.30
46 47 1.061799 CGCTAGCGTTGCTTTTGCTG 61.062 55.000 28.66 0.00 40.44 4.41
47 48 1.207593 CGCTAGCGTTGCTTTTGCT 59.792 52.632 28.66 0.00 40.44 3.91
48 49 1.797537 CCGCTAGCGTTGCTTTTGC 60.798 57.895 33.18 0.00 40.44 3.68
49 50 1.797537 GCCGCTAGCGTTGCTTTTG 60.798 57.895 33.18 17.50 40.44 2.44
50 51 2.561373 GCCGCTAGCGTTGCTTTT 59.439 55.556 33.18 0.00 40.44 2.27
78 79 3.878519 GAGTCGGGCTCGGTCTCG 61.879 72.222 5.94 0.00 34.13 4.04
85 86 2.104530 GTTAGGCGAGTCGGGCTC 59.895 66.667 15.52 0.00 42.48 4.70
86 87 3.459063 GGTTAGGCGAGTCGGGCT 61.459 66.667 15.52 14.42 45.70 5.19
87 88 4.525949 GGGTTAGGCGAGTCGGGC 62.526 72.222 15.52 7.52 0.00 6.13
88 89 1.453762 CTAGGGTTAGGCGAGTCGGG 61.454 65.000 15.52 0.00 0.00 5.14
89 90 1.453762 CCTAGGGTTAGGCGAGTCGG 61.454 65.000 15.52 0.00 40.10 4.79
90 91 1.453762 CCCTAGGGTTAGGCGAGTCG 61.454 65.000 20.88 8.54 44.44 4.18
91 92 0.106318 TCCCTAGGGTTAGGCGAGTC 60.106 60.000 27.58 0.00 44.44 3.36
92 93 0.396835 GTCCCTAGGGTTAGGCGAGT 60.397 60.000 27.58 0.00 44.44 4.18
93 94 1.453762 CGTCCCTAGGGTTAGGCGAG 61.454 65.000 27.58 7.34 44.44 5.03
94 95 1.454479 CGTCCCTAGGGTTAGGCGA 60.454 63.158 27.58 2.99 44.44 5.54
95 96 2.496291 CCGTCCCTAGGGTTAGGCG 61.496 68.421 27.58 21.46 44.44 5.52
96 97 2.138831 CCCGTCCCTAGGGTTAGGC 61.139 68.421 27.58 12.27 44.44 3.93
97 98 4.290023 CCCGTCCCTAGGGTTAGG 57.710 66.667 27.58 25.03 45.23 2.69
103 104 1.455959 CCTCTGTCCCGTCCCTAGG 60.456 68.421 0.06 0.06 0.00 3.02
104 105 1.455959 CCCTCTGTCCCGTCCCTAG 60.456 68.421 0.00 0.00 0.00 3.02
105 106 2.687902 CCCTCTGTCCCGTCCCTA 59.312 66.667 0.00 0.00 0.00 3.53
106 107 4.400251 CCCCTCTGTCCCGTCCCT 62.400 72.222 0.00 0.00 0.00 4.20
114 115 4.779733 TCTCCCGCCCCCTCTGTC 62.780 72.222 0.00 0.00 0.00 3.51
115 116 4.787280 CTCTCCCGCCCCCTCTGT 62.787 72.222 0.00 0.00 0.00 3.41
116 117 4.465446 TCTCTCCCGCCCCCTCTG 62.465 72.222 0.00 0.00 0.00 3.35
117 118 4.150454 CTCTCTCCCGCCCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
125 126 3.151022 GTGAGGCCCTCTCTCCCG 61.151 72.222 12.94 0.00 42.86 5.14
126 127 2.766229 GGTGAGGCCCTCTCTCCC 60.766 72.222 12.94 3.08 45.65 4.30
128 129 1.334384 GGAAGGTGAGGCCCTCTCTC 61.334 65.000 12.94 3.06 42.86 3.20
129 130 1.306568 GGAAGGTGAGGCCCTCTCT 60.307 63.158 12.94 6.83 42.86 3.10
130 131 0.032017 TAGGAAGGTGAGGCCCTCTC 60.032 60.000 12.94 8.42 42.74 3.20
131 132 0.031616 CTAGGAAGGTGAGGCCCTCT 60.032 60.000 12.94 0.00 38.26 3.69
132 133 1.691195 GCTAGGAAGGTGAGGCCCTC 61.691 65.000 2.98 2.98 38.26 4.30
133 134 1.690985 GCTAGGAAGGTGAGGCCCT 60.691 63.158 0.00 0.00 38.26 5.19
134 135 2.747443 GGCTAGGAAGGTGAGGCCC 61.747 68.421 0.00 0.00 38.26 5.80
135 136 2.911928 GGCTAGGAAGGTGAGGCC 59.088 66.667 0.00 0.00 37.58 5.19
136 137 2.501610 CGGCTAGGAAGGTGAGGC 59.498 66.667 0.00 0.00 0.00 4.70
137 138 2.435693 CCCGGCTAGGAAGGTGAGG 61.436 68.421 0.00 0.00 45.00 3.86
138 139 0.760945 ATCCCGGCTAGGAAGGTGAG 60.761 60.000 0.00 0.00 45.00 3.51
139 140 0.759436 GATCCCGGCTAGGAAGGTGA 60.759 60.000 0.00 0.00 45.00 4.02
140 141 1.749033 GATCCCGGCTAGGAAGGTG 59.251 63.158 0.00 0.00 45.00 4.00
141 142 1.459730 GGATCCCGGCTAGGAAGGT 60.460 63.158 0.00 0.00 45.00 3.50
142 143 1.459539 TGGATCCCGGCTAGGAAGG 60.460 63.158 9.90 0.00 45.00 3.46
143 144 2.053618 CTGGATCCCGGCTAGGAAG 58.946 63.158 9.90 0.00 45.00 3.46
144 145 4.295407 CTGGATCCCGGCTAGGAA 57.705 61.111 9.90 0.00 45.00 3.36
154 155 4.467084 TCAACGGCGGCTGGATCC 62.467 66.667 13.24 4.20 0.00 3.36
155 156 2.892425 CTCAACGGCGGCTGGATC 60.892 66.667 13.24 0.00 0.00 3.36
156 157 4.473520 CCTCAACGGCGGCTGGAT 62.474 66.667 13.24 0.00 0.00 3.41
163 164 4.308458 TGGTGGTCCTCAACGGCG 62.308 66.667 4.80 4.80 35.35 6.46
164 165 2.358737 CTGGTGGTCCTCAACGGC 60.359 66.667 0.00 0.00 35.35 5.68
165 166 2.347490 CCTGGTGGTCCTCAACGG 59.653 66.667 0.00 0.00 39.15 4.44
166 167 3.148084 ACCTGGTGGTCCTCAACG 58.852 61.111 0.00 0.00 44.78 4.10
179 180 4.351938 TCAACGACGGCGGACCTG 62.352 66.667 18.49 6.81 43.17 4.00
180 181 4.052229 CTCAACGACGGCGGACCT 62.052 66.667 18.49 0.00 43.17 3.85
192 193 3.887335 TTACGCGGGGTGGCTCAAC 62.887 63.158 12.47 0.00 0.00 3.18
193 194 3.599285 CTTACGCGGGGTGGCTCAA 62.599 63.158 12.47 0.00 0.00 3.02
194 195 4.077184 CTTACGCGGGGTGGCTCA 62.077 66.667 12.47 0.00 0.00 4.26
195 196 4.078516 ACTTACGCGGGGTGGCTC 62.079 66.667 12.47 0.00 0.00 4.70
196 197 4.078516 GACTTACGCGGGGTGGCT 62.079 66.667 12.47 0.00 0.00 4.75
206 207 2.735478 TGGCAACGGCGACTTACG 60.735 61.111 16.62 0.00 42.47 3.18
207 208 2.674084 GGTGGCAACGGCGACTTAC 61.674 63.158 16.62 5.71 46.60 2.34
208 209 2.357760 GGTGGCAACGGCGACTTA 60.358 61.111 16.62 0.00 46.60 2.24
214 215 4.025401 CAAGACGGTGGCAACGGC 62.025 66.667 30.22 28.42 40.35 5.68
215 216 4.025401 GCAAGACGGTGGCAACGG 62.025 66.667 30.22 12.38 42.51 4.44
216 217 4.368808 CGCAAGACGGTGGCAACG 62.369 66.667 25.44 25.44 43.02 4.10
225 226 3.626680 TTCTCTCGCCCGCAAGACG 62.627 63.158 0.00 0.00 43.15 4.18
226 227 1.355066 CTTTCTCTCGCCCGCAAGAC 61.355 60.000 0.00 0.00 43.02 3.01
227 228 1.079819 CTTTCTCTCGCCCGCAAGA 60.080 57.895 0.00 0.00 43.02 3.02
228 229 2.103042 CCTTTCTCTCGCCCGCAAG 61.103 63.158 0.00 0.00 0.00 4.01
229 230 2.047274 CCTTTCTCTCGCCCGCAA 60.047 61.111 0.00 0.00 0.00 4.85
230 231 4.082523 CCCTTTCTCTCGCCCGCA 62.083 66.667 0.00 0.00 0.00 5.69
231 232 3.310860 TTCCCTTTCTCTCGCCCGC 62.311 63.158 0.00 0.00 0.00 6.13
232 233 1.448013 GTTCCCTTTCTCTCGCCCG 60.448 63.158 0.00 0.00 0.00 6.13
233 234 0.036306 TTGTTCCCTTTCTCTCGCCC 59.964 55.000 0.00 0.00 0.00 6.13
234 235 1.443802 CTTGTTCCCTTTCTCTCGCC 58.556 55.000 0.00 0.00 0.00 5.54
235 236 1.443802 CCTTGTTCCCTTTCTCTCGC 58.556 55.000 0.00 0.00 0.00 5.03
236 237 1.946283 GCCCTTGTTCCCTTTCTCTCG 60.946 57.143 0.00 0.00 0.00 4.04
237 238 1.827681 GCCCTTGTTCCCTTTCTCTC 58.172 55.000 0.00 0.00 0.00 3.20
238 239 0.036875 CGCCCTTGTTCCCTTTCTCT 59.963 55.000 0.00 0.00 0.00 3.10
239 240 0.036306 TCGCCCTTGTTCCCTTTCTC 59.964 55.000 0.00 0.00 0.00 2.87
240 241 0.036875 CTCGCCCTTGTTCCCTTTCT 59.963 55.000 0.00 0.00 0.00 2.52
241 242 1.587043 GCTCGCCCTTGTTCCCTTTC 61.587 60.000 0.00 0.00 0.00 2.62
242 243 1.603739 GCTCGCCCTTGTTCCCTTT 60.604 57.895 0.00 0.00 0.00 3.11
243 244 2.034221 GCTCGCCCTTGTTCCCTT 59.966 61.111 0.00 0.00 0.00 3.95
244 245 4.394712 CGCTCGCCCTTGTTCCCT 62.395 66.667 0.00 0.00 0.00 4.20
245 246 3.894547 TTCGCTCGCCCTTGTTCCC 62.895 63.158 0.00 0.00 0.00 3.97
246 247 2.358247 TTCGCTCGCCCTTGTTCC 60.358 61.111 0.00 0.00 0.00 3.62
247 248 2.677979 GGTTCGCTCGCCCTTGTTC 61.678 63.158 0.00 0.00 0.00 3.18
248 249 2.668550 GGTTCGCTCGCCCTTGTT 60.669 61.111 0.00 0.00 0.00 2.83
249 250 1.895020 TATGGTTCGCTCGCCCTTGT 61.895 55.000 0.00 0.00 0.00 3.16
250 251 0.742990 TTATGGTTCGCTCGCCCTTG 60.743 55.000 0.00 0.00 0.00 3.61
251 252 0.743345 GTTATGGTTCGCTCGCCCTT 60.743 55.000 0.00 0.00 0.00 3.95
252 253 1.153429 GTTATGGTTCGCTCGCCCT 60.153 57.895 0.00 0.00 0.00 5.19
253 254 2.522638 CGTTATGGTTCGCTCGCCC 61.523 63.158 0.00 0.00 0.00 6.13
254 255 1.480219 CTCGTTATGGTTCGCTCGCC 61.480 60.000 0.00 0.00 0.00 5.54
255 256 0.524816 TCTCGTTATGGTTCGCTCGC 60.525 55.000 0.00 0.00 0.00 5.03
256 257 2.044860 GATCTCGTTATGGTTCGCTCG 58.955 52.381 0.00 0.00 0.00 5.03
257 258 3.301706 GAGATCTCGTTATGGTTCGCTC 58.698 50.000 7.04 0.00 0.00 5.03
258 259 2.034812 GGAGATCTCGTTATGGTTCGCT 59.965 50.000 16.46 0.00 0.00 4.93
259 260 2.223735 TGGAGATCTCGTTATGGTTCGC 60.224 50.000 16.46 0.00 0.00 4.70
260 261 3.066900 ACTGGAGATCTCGTTATGGTTCG 59.933 47.826 16.46 0.00 0.00 3.95
261 262 4.657436 ACTGGAGATCTCGTTATGGTTC 57.343 45.455 16.46 0.06 0.00 3.62
262 263 4.440250 CGAACTGGAGATCTCGTTATGGTT 60.440 45.833 16.46 13.02 0.00 3.67
263 264 3.066900 CGAACTGGAGATCTCGTTATGGT 59.933 47.826 16.46 3.29 0.00 3.55
264 265 3.066900 ACGAACTGGAGATCTCGTTATGG 59.933 47.826 16.46 10.50 41.48 2.74
265 266 4.294416 ACGAACTGGAGATCTCGTTATG 57.706 45.455 16.46 12.96 41.48 1.90
269 270 1.130749 CGAACGAACTGGAGATCTCGT 59.869 52.381 16.46 8.06 45.84 4.18
270 271 1.130749 ACGAACGAACTGGAGATCTCG 59.869 52.381 16.46 7.40 37.33 4.04
271 272 2.520979 CACGAACGAACTGGAGATCTC 58.479 52.381 14.75 14.75 0.00 2.75
272 273 1.202582 CCACGAACGAACTGGAGATCT 59.797 52.381 0.00 0.00 0.00 2.75
273 274 1.067776 ACCACGAACGAACTGGAGATC 60.068 52.381 8.82 0.00 0.00 2.75
274 275 0.966920 ACCACGAACGAACTGGAGAT 59.033 50.000 8.82 0.00 0.00 2.75
275 276 0.313043 GACCACGAACGAACTGGAGA 59.687 55.000 8.82 0.00 0.00 3.71
276 277 0.031585 TGACCACGAACGAACTGGAG 59.968 55.000 8.82 0.00 0.00 3.86
277 278 0.460722 TTGACCACGAACGAACTGGA 59.539 50.000 8.82 0.00 0.00 3.86
278 279 1.459592 GATTGACCACGAACGAACTGG 59.540 52.381 0.14 1.11 0.00 4.00
279 280 1.459592 GGATTGACCACGAACGAACTG 59.540 52.381 0.14 0.00 38.79 3.16
280 281 1.343465 AGGATTGACCACGAACGAACT 59.657 47.619 0.14 0.00 42.04 3.01
281 282 1.459592 CAGGATTGACCACGAACGAAC 59.540 52.381 0.14 0.00 42.04 3.95
282 283 1.606994 CCAGGATTGACCACGAACGAA 60.607 52.381 0.14 0.00 42.04 3.85
283 284 0.037697 CCAGGATTGACCACGAACGA 60.038 55.000 0.14 0.00 42.04 3.85
284 285 1.019278 CCCAGGATTGACCACGAACG 61.019 60.000 0.00 0.00 42.04 3.95
285 286 0.323629 TCCCAGGATTGACCACGAAC 59.676 55.000 0.00 0.00 42.04 3.95
286 287 0.613260 CTCCCAGGATTGACCACGAA 59.387 55.000 0.00 0.00 42.04 3.85
287 288 0.252057 TCTCCCAGGATTGACCACGA 60.252 55.000 0.00 0.00 42.04 4.35
288 289 0.176680 CTCTCCCAGGATTGACCACG 59.823 60.000 0.00 0.00 42.04 4.94
298 299 1.141053 CGAAAATACCCCTCTCCCAGG 59.859 57.143 0.00 0.00 43.01 4.45
299 300 2.116238 TCGAAAATACCCCTCTCCCAG 58.884 52.381 0.00 0.00 0.00 4.45
300 301 1.835531 GTCGAAAATACCCCTCTCCCA 59.164 52.381 0.00 0.00 0.00 4.37
301 302 2.117051 AGTCGAAAATACCCCTCTCCC 58.883 52.381 0.00 0.00 0.00 4.30
302 303 3.908643 AAGTCGAAAATACCCCTCTCC 57.091 47.619 0.00 0.00 0.00 3.71
303 304 5.489249 AGAAAAGTCGAAAATACCCCTCTC 58.511 41.667 0.00 0.00 0.00 3.20
304 305 5.500546 AGAAAAGTCGAAAATACCCCTCT 57.499 39.130 0.00 0.00 0.00 3.69
305 306 5.472478 ACAAGAAAAGTCGAAAATACCCCTC 59.528 40.000 0.00 0.00 0.00 4.30
306 307 5.240844 CACAAGAAAAGTCGAAAATACCCCT 59.759 40.000 0.00 0.00 0.00 4.79
307 308 5.458015 CACAAGAAAAGTCGAAAATACCCC 58.542 41.667 0.00 0.00 0.00 4.95
308 309 5.458015 CCACAAGAAAAGTCGAAAATACCC 58.542 41.667 0.00 0.00 0.00 3.69
309 310 5.239963 TCCCACAAGAAAAGTCGAAAATACC 59.760 40.000 0.00 0.00 0.00 2.73
310 311 6.140786 GTCCCACAAGAAAAGTCGAAAATAC 58.859 40.000 0.00 0.00 0.00 1.89
311 312 5.239963 GGTCCCACAAGAAAAGTCGAAAATA 59.760 40.000 0.00 0.00 0.00 1.40
312 313 4.037565 GGTCCCACAAGAAAAGTCGAAAAT 59.962 41.667 0.00 0.00 0.00 1.82
313 314 3.379057 GGTCCCACAAGAAAAGTCGAAAA 59.621 43.478 0.00 0.00 0.00 2.29
314 315 2.946990 GGTCCCACAAGAAAAGTCGAAA 59.053 45.455 0.00 0.00 0.00 3.46
315 316 2.567985 GGTCCCACAAGAAAAGTCGAA 58.432 47.619 0.00 0.00 0.00 3.71
316 317 1.202722 GGGTCCCACAAGAAAAGTCGA 60.203 52.381 1.78 0.00 0.00 4.20
317 318 1.235724 GGGTCCCACAAGAAAAGTCG 58.764 55.000 1.78 0.00 0.00 4.18
318 319 2.230660 CTGGGTCCCACAAGAAAAGTC 58.769 52.381 6.47 0.00 0.00 3.01
319 320 1.569072 ACTGGGTCCCACAAGAAAAGT 59.431 47.619 6.47 0.00 0.00 2.66
320 321 2.230660 GACTGGGTCCCACAAGAAAAG 58.769 52.381 6.47 0.00 0.00 2.27
321 322 1.476110 CGACTGGGTCCCACAAGAAAA 60.476 52.381 6.47 0.00 0.00 2.29
322 323 0.107831 CGACTGGGTCCCACAAGAAA 59.892 55.000 6.47 0.00 0.00 2.52
323 324 0.761323 TCGACTGGGTCCCACAAGAA 60.761 55.000 6.47 0.00 0.00 2.52
324 325 1.152419 TCGACTGGGTCCCACAAGA 60.152 57.895 6.47 3.32 0.00 3.02
325 326 1.004918 GTCGACTGGGTCCCACAAG 60.005 63.158 6.47 0.00 0.00 3.16
326 327 1.754380 CTGTCGACTGGGTCCCACAA 61.754 60.000 17.92 0.00 0.00 3.33
327 328 2.123208 TGTCGACTGGGTCCCACA 60.123 61.111 17.92 0.00 0.00 4.17
328 329 1.878656 CTCTGTCGACTGGGTCCCAC 61.879 65.000 20.57 0.00 0.00 4.61
329 330 1.606601 CTCTGTCGACTGGGTCCCA 60.607 63.158 20.57 11.11 0.00 4.37
330 331 2.352032 CCTCTGTCGACTGGGTCCC 61.352 68.421 19.49 0.00 0.00 4.46
331 332 2.352032 CCCTCTGTCGACTGGGTCC 61.352 68.421 24.07 0.00 35.13 4.46
332 333 3.007973 GCCCTCTGTCGACTGGGTC 62.008 68.421 28.84 21.48 41.59 4.46
333 334 2.997897 GCCCTCTGTCGACTGGGT 60.998 66.667 28.84 0.00 41.59 4.51
334 335 2.111999 TTTGCCCTCTGTCGACTGGG 62.112 60.000 26.43 26.43 42.41 4.45
335 336 0.250295 TTTTGCCCTCTGTCGACTGG 60.250 55.000 20.57 16.63 0.00 4.00
336 337 1.813513 ATTTTGCCCTCTGTCGACTG 58.186 50.000 17.92 16.72 0.00 3.51
337 338 3.244422 TGTTATTTTGCCCTCTGTCGACT 60.244 43.478 17.92 0.00 0.00 4.18
338 339 3.071479 TGTTATTTTGCCCTCTGTCGAC 58.929 45.455 9.11 9.11 0.00 4.20
339 340 3.410631 TGTTATTTTGCCCTCTGTCGA 57.589 42.857 0.00 0.00 0.00 4.20
340 341 4.023193 ACTTTGTTATTTTGCCCTCTGTCG 60.023 41.667 0.00 0.00 0.00 4.35
341 342 5.453567 ACTTTGTTATTTTGCCCTCTGTC 57.546 39.130 0.00 0.00 0.00 3.51
342 343 5.869649 AACTTTGTTATTTTGCCCTCTGT 57.130 34.783 0.00 0.00 0.00 3.41
343 344 6.279882 TGAAACTTTGTTATTTTGCCCTCTG 58.720 36.000 0.00 0.00 0.00 3.35
344 345 6.478512 TGAAACTTTGTTATTTTGCCCTCT 57.521 33.333 0.00 0.00 0.00 3.69
345 346 6.705825 ACATGAAACTTTGTTATTTTGCCCTC 59.294 34.615 0.00 0.00 0.00 4.30
346 347 6.591001 ACATGAAACTTTGTTATTTTGCCCT 58.409 32.000 0.00 0.00 0.00 5.19
347 348 6.859420 ACATGAAACTTTGTTATTTTGCCC 57.141 33.333 0.00 0.00 0.00 5.36
348 349 9.040939 AGTTACATGAAACTTTGTTATTTTGCC 57.959 29.630 0.00 0.00 36.26 4.52
349 350 9.848172 CAGTTACATGAAACTTTGTTATTTTGC 57.152 29.630 0.00 0.00 37.61 3.68
352 353 9.528018 CACCAGTTACATGAAACTTTGTTATTT 57.472 29.630 0.00 0.00 37.61 1.40
353 354 8.691797 ACACCAGTTACATGAAACTTTGTTATT 58.308 29.630 0.00 0.00 37.61 1.40
354 355 8.232913 ACACCAGTTACATGAAACTTTGTTAT 57.767 30.769 0.00 0.00 37.61 1.89
355 356 7.337184 TGACACCAGTTACATGAAACTTTGTTA 59.663 33.333 0.00 0.00 37.61 2.41
356 357 6.151985 TGACACCAGTTACATGAAACTTTGTT 59.848 34.615 0.00 0.00 37.61 2.83
357 358 5.650266 TGACACCAGTTACATGAAACTTTGT 59.350 36.000 0.00 0.00 37.61 2.83
358 359 6.130298 TGACACCAGTTACATGAAACTTTG 57.870 37.500 0.00 0.00 37.61 2.77
359 360 6.959639 ATGACACCAGTTACATGAAACTTT 57.040 33.333 0.00 0.00 37.61 2.66
360 361 6.959639 AATGACACCAGTTACATGAAACTT 57.040 33.333 0.00 0.00 37.61 2.66
361 362 7.450074 TCTAATGACACCAGTTACATGAAACT 58.550 34.615 0.00 0.00 40.33 2.66
362 363 7.667043 TCTAATGACACCAGTTACATGAAAC 57.333 36.000 0.00 0.00 0.00 2.78
363 364 8.100164 TGATCTAATGACACCAGTTACATGAAA 58.900 33.333 0.00 0.00 0.00 2.69
364 365 7.619965 TGATCTAATGACACCAGTTACATGAA 58.380 34.615 0.00 0.00 0.00 2.57
365 366 7.181569 TGATCTAATGACACCAGTTACATGA 57.818 36.000 0.00 0.00 0.00 3.07
366 367 7.848223 TTGATCTAATGACACCAGTTACATG 57.152 36.000 0.00 0.00 0.00 3.21
368 369 9.378551 GTAATTGATCTAATGACACCAGTTACA 57.621 33.333 0.00 0.00 31.37 2.41
369 370 9.378551 TGTAATTGATCTAATGACACCAGTTAC 57.621 33.333 0.00 0.00 35.59 2.50
370 371 9.952030 TTGTAATTGATCTAATGACACCAGTTA 57.048 29.630 7.28 0.00 39.39 2.24
371 372 8.862325 TTGTAATTGATCTAATGACACCAGTT 57.138 30.769 7.28 0.00 39.39 3.16
372 373 7.554118 CCTTGTAATTGATCTAATGACACCAGT 59.446 37.037 7.28 0.00 39.39 4.00
373 374 7.554118 ACCTTGTAATTGATCTAATGACACCAG 59.446 37.037 7.28 4.85 39.39 4.00
374 375 7.402054 ACCTTGTAATTGATCTAATGACACCA 58.598 34.615 7.28 0.00 39.39 4.17
375 376 7.865706 ACCTTGTAATTGATCTAATGACACC 57.134 36.000 7.28 0.00 39.39 4.16
377 378 9.613428 CCTTACCTTGTAATTGATCTAATGACA 57.387 33.333 0.00 0.00 38.18 3.58
378 379 9.057089 CCCTTACCTTGTAATTGATCTAATGAC 57.943 37.037 0.00 0.00 31.63 3.06
379 380 8.998814 TCCCTTACCTTGTAATTGATCTAATGA 58.001 33.333 0.00 0.00 0.00 2.57
380 381 9.799106 ATCCCTTACCTTGTAATTGATCTAATG 57.201 33.333 0.00 0.00 0.00 1.90
381 382 9.799106 CATCCCTTACCTTGTAATTGATCTAAT 57.201 33.333 0.00 0.00 0.00 1.73
382 383 8.217799 CCATCCCTTACCTTGTAATTGATCTAA 58.782 37.037 0.00 0.00 0.00 2.10
383 384 7.691791 GCCATCCCTTACCTTGTAATTGATCTA 60.692 40.741 0.00 0.00 0.00 1.98
384 385 6.605119 CCATCCCTTACCTTGTAATTGATCT 58.395 40.000 0.00 0.00 0.00 2.75
385 386 5.241728 GCCATCCCTTACCTTGTAATTGATC 59.758 44.000 0.00 0.00 0.00 2.92
386 387 5.140454 GCCATCCCTTACCTTGTAATTGAT 58.860 41.667 0.00 0.00 0.00 2.57
387 388 4.017958 TGCCATCCCTTACCTTGTAATTGA 60.018 41.667 0.00 0.00 0.00 2.57
388 389 4.277476 TGCCATCCCTTACCTTGTAATTG 58.723 43.478 0.00 0.00 0.00 2.32
389 390 4.601406 TGCCATCCCTTACCTTGTAATT 57.399 40.909 0.00 0.00 0.00 1.40
390 391 4.601406 TTGCCATCCCTTACCTTGTAAT 57.399 40.909 0.00 0.00 0.00 1.89
391 392 4.390129 TTTGCCATCCCTTACCTTGTAA 57.610 40.909 0.00 0.00 0.00 2.41
392 393 4.601406 ATTTGCCATCCCTTACCTTGTA 57.399 40.909 0.00 0.00 0.00 2.41
393 394 2.990740 TTTGCCATCCCTTACCTTGT 57.009 45.000 0.00 0.00 0.00 3.16
394 395 5.598005 TGATAATTTGCCATCCCTTACCTTG 59.402 40.000 0.00 0.00 0.00 3.61
395 396 5.776358 TGATAATTTGCCATCCCTTACCTT 58.224 37.500 0.00 0.00 0.00 3.50
396 397 5.402054 TGATAATTTGCCATCCCTTACCT 57.598 39.130 0.00 0.00 0.00 3.08
397 398 6.323739 TCTTTGATAATTTGCCATCCCTTACC 59.676 38.462 0.00 0.00 0.00 2.85
398 399 7.346751 TCTTTGATAATTTGCCATCCCTTAC 57.653 36.000 0.00 0.00 0.00 2.34
399 400 6.040842 GCTCTTTGATAATTTGCCATCCCTTA 59.959 38.462 0.00 0.00 0.00 2.69
400 401 5.163374 GCTCTTTGATAATTTGCCATCCCTT 60.163 40.000 0.00 0.00 0.00 3.95
401 402 4.343239 GCTCTTTGATAATTTGCCATCCCT 59.657 41.667 0.00 0.00 0.00 4.20
402 403 4.099881 TGCTCTTTGATAATTTGCCATCCC 59.900 41.667 0.00 0.00 0.00 3.85
403 404 5.266733 TGCTCTTTGATAATTTGCCATCC 57.733 39.130 0.00 0.00 0.00 3.51
404 405 7.037438 TCTTTGCTCTTTGATAATTTGCCATC 58.963 34.615 0.00 0.00 0.00 3.51
405 406 6.938507 TCTTTGCTCTTTGATAATTTGCCAT 58.061 32.000 0.00 0.00 0.00 4.40
406 407 6.343716 TCTTTGCTCTTTGATAATTTGCCA 57.656 33.333 0.00 0.00 0.00 4.92
407 408 7.386025 ACTTTCTTTGCTCTTTGATAATTTGCC 59.614 33.333 0.00 0.00 0.00 4.52
408 409 8.219105 CACTTTCTTTGCTCTTTGATAATTTGC 58.781 33.333 0.00 0.00 0.00 3.68
409 410 8.706035 CCACTTTCTTTGCTCTTTGATAATTTG 58.294 33.333 0.00 0.00 0.00 2.32
410 411 8.424133 ACCACTTTCTTTGCTCTTTGATAATTT 58.576 29.630 0.00 0.00 0.00 1.82
411 412 7.869429 CACCACTTTCTTTGCTCTTTGATAATT 59.131 33.333 0.00 0.00 0.00 1.40
412 413 7.373493 CACCACTTTCTTTGCTCTTTGATAAT 58.627 34.615 0.00 0.00 0.00 1.28
413 414 6.239008 CCACCACTTTCTTTGCTCTTTGATAA 60.239 38.462 0.00 0.00 0.00 1.75
414 415 5.241506 CCACCACTTTCTTTGCTCTTTGATA 59.758 40.000 0.00 0.00 0.00 2.15
415 416 4.038402 CCACCACTTTCTTTGCTCTTTGAT 59.962 41.667 0.00 0.00 0.00 2.57
416 417 3.381272 CCACCACTTTCTTTGCTCTTTGA 59.619 43.478 0.00 0.00 0.00 2.69
417 418 3.709987 CCACCACTTTCTTTGCTCTTTG 58.290 45.455 0.00 0.00 0.00 2.77
418 419 2.101415 GCCACCACTTTCTTTGCTCTTT 59.899 45.455 0.00 0.00 0.00 2.52
419 420 1.683385 GCCACCACTTTCTTTGCTCTT 59.317 47.619 0.00 0.00 0.00 2.85
420 421 1.322442 GCCACCACTTTCTTTGCTCT 58.678 50.000 0.00 0.00 0.00 4.09
421 422 1.032014 TGCCACCACTTTCTTTGCTC 58.968 50.000 0.00 0.00 0.00 4.26
422 423 1.484038 TTGCCACCACTTTCTTTGCT 58.516 45.000 0.00 0.00 0.00 3.91
423 424 2.307934 TTTGCCACCACTTTCTTTGC 57.692 45.000 0.00 0.00 0.00 3.68
424 425 6.222389 TGATTATTTGCCACCACTTTCTTTG 58.778 36.000 0.00 0.00 0.00 2.77
425 426 6.418057 TGATTATTTGCCACCACTTTCTTT 57.582 33.333 0.00 0.00 0.00 2.52
426 427 6.418057 TTGATTATTTGCCACCACTTTCTT 57.582 33.333 0.00 0.00 0.00 2.52
427 428 6.418057 TTTGATTATTTGCCACCACTTTCT 57.582 33.333 0.00 0.00 0.00 2.52
428 429 7.148423 GGAATTTGATTATTTGCCACCACTTTC 60.148 37.037 0.00 0.00 0.00 2.62
429 430 6.654582 GGAATTTGATTATTTGCCACCACTTT 59.345 34.615 0.00 0.00 0.00 2.66
430 431 6.172630 GGAATTTGATTATTTGCCACCACTT 58.827 36.000 0.00 0.00 0.00 3.16
431 432 5.338300 GGGAATTTGATTATTTGCCACCACT 60.338 40.000 0.00 0.00 31.76 4.00
432 433 4.875536 GGGAATTTGATTATTTGCCACCAC 59.124 41.667 0.00 0.00 31.76 4.16
433 434 4.080638 GGGGAATTTGATTATTTGCCACCA 60.081 41.667 0.00 0.00 32.96 4.17
434 435 4.450976 GGGGAATTTGATTATTTGCCACC 58.549 43.478 0.00 0.00 32.96 4.61
435 436 4.119136 CGGGGAATTTGATTATTTGCCAC 58.881 43.478 0.00 0.00 32.96 5.01
436 437 4.026744 TCGGGGAATTTGATTATTTGCCA 58.973 39.130 0.00 0.00 32.96 4.92
437 438 4.664150 TCGGGGAATTTGATTATTTGCC 57.336 40.909 0.00 0.00 0.00 4.52
438 439 5.221422 TGGATCGGGGAATTTGATTATTTGC 60.221 40.000 0.00 0.00 0.00 3.68
439 440 6.403866 TGGATCGGGGAATTTGATTATTTG 57.596 37.500 0.00 0.00 0.00 2.32
440 441 7.444299 CATTGGATCGGGGAATTTGATTATTT 58.556 34.615 0.00 0.00 0.00 1.40
441 442 6.014327 CCATTGGATCGGGGAATTTGATTATT 60.014 38.462 0.00 0.00 0.00 1.40
442 443 5.481473 CCATTGGATCGGGGAATTTGATTAT 59.519 40.000 0.00 0.00 0.00 1.28
443 444 4.832266 CCATTGGATCGGGGAATTTGATTA 59.168 41.667 0.00 0.00 0.00 1.75
444 445 3.642848 CCATTGGATCGGGGAATTTGATT 59.357 43.478 0.00 0.00 0.00 2.57
445 446 3.233507 CCATTGGATCGGGGAATTTGAT 58.766 45.455 0.00 0.00 0.00 2.57
446 447 2.665165 CCATTGGATCGGGGAATTTGA 58.335 47.619 0.00 0.00 0.00 2.69
447 448 1.069049 GCCATTGGATCGGGGAATTTG 59.931 52.381 6.95 0.00 0.00 2.32
448 449 1.413118 GCCATTGGATCGGGGAATTT 58.587 50.000 6.95 0.00 0.00 1.82
449 450 0.469892 GGCCATTGGATCGGGGAATT 60.470 55.000 6.95 0.00 0.00 2.17
450 451 1.153756 GGCCATTGGATCGGGGAAT 59.846 57.895 6.95 0.00 0.00 3.01
451 452 2.600731 GGCCATTGGATCGGGGAA 59.399 61.111 6.95 0.00 0.00 3.97
452 453 3.872603 CGGCCATTGGATCGGGGA 61.873 66.667 6.95 0.00 0.00 4.81
453 454 3.832237 CTCGGCCATTGGATCGGGG 62.832 68.421 6.95 3.29 0.00 5.73
454 455 2.281070 CTCGGCCATTGGATCGGG 60.281 66.667 6.95 5.62 0.00 5.14
455 456 2.281070 CCTCGGCCATTGGATCGG 60.281 66.667 6.95 4.12 0.00 4.18
456 457 2.974698 GCCTCGGCCATTGGATCG 60.975 66.667 6.95 9.57 34.56 3.69
468 469 2.328099 GCACTTGGGTTCAGCCTCG 61.328 63.158 0.00 0.00 37.43 4.63
509 511 2.094026 TGTCAGATCCGATGGTTCACTG 60.094 50.000 0.00 0.00 0.00 3.66
511 513 2.544685 CTGTCAGATCCGATGGTTCAC 58.455 52.381 0.00 0.00 0.00 3.18
530 532 0.392193 CAACGGCTGAGATTGAGGCT 60.392 55.000 0.00 0.00 33.89 4.58
625 628 3.430497 CGAGGAGAGGGGAGGGGA 61.430 72.222 0.00 0.00 0.00 4.81
1423 1821 3.490439 TCACAACAAGAGCAGATCCAA 57.510 42.857 0.00 0.00 0.00 3.53
1557 1957 8.156820 TCAATAGTATGCACTGGCTATTTGTAT 58.843 33.333 9.68 0.00 41.91 2.29
1558 1958 7.505258 TCAATAGTATGCACTGGCTATTTGTA 58.495 34.615 9.68 0.79 41.91 2.41
1561 1961 6.595682 ACTCAATAGTATGCACTGGCTATTT 58.404 36.000 9.68 0.00 35.90 1.40
1566 1966 4.191544 TCAACTCAATAGTATGCACTGGC 58.808 43.478 0.00 0.00 36.14 4.85
1568 1968 5.292834 CCACTCAACTCAATAGTATGCACTG 59.707 44.000 0.00 0.00 36.14 3.66
1739 2140 6.540551 TCACTGGCGCTATTTATTGTAAATGA 59.459 34.615 7.64 0.00 0.00 2.57
1744 2145 4.213270 GCATCACTGGCGCTATTTATTGTA 59.787 41.667 7.64 0.00 0.00 2.41
1746 2147 3.251729 AGCATCACTGGCGCTATTTATTG 59.748 43.478 7.64 0.00 33.25 1.90
1752 2156 1.043816 ACTAGCATCACTGGCGCTAT 58.956 50.000 7.64 0.00 37.60 2.97
1788 2192 2.198150 TGTGCCACCCAAGCATGT 59.802 55.556 0.00 0.00 43.29 3.21
1795 2199 1.376086 CTGATGAGTGTGCCACCCA 59.624 57.895 0.00 0.00 34.49 4.51
1821 2225 4.524328 GGAGATGGATTGGTTGTCAACTTT 59.476 41.667 15.17 1.01 38.31 2.66
1841 2245 2.672961 TCATAGCCACGACAAAGGAG 57.327 50.000 0.00 0.00 0.00 3.69
1844 2248 2.972625 TCCTTCATAGCCACGACAAAG 58.027 47.619 0.00 0.00 0.00 2.77
1846 2250 3.410631 TTTCCTTCATAGCCACGACAA 57.589 42.857 0.00 0.00 0.00 3.18
1850 2254 4.731773 GCTCAAATTTCCTTCATAGCCACG 60.732 45.833 0.00 0.00 0.00 4.94
1851 2255 4.440663 GGCTCAAATTTCCTTCATAGCCAC 60.441 45.833 0.00 0.00 45.99 5.01
1852 2256 3.701040 GGCTCAAATTTCCTTCATAGCCA 59.299 43.478 0.00 0.00 45.99 4.75
1853 2257 3.068732 GGGCTCAAATTTCCTTCATAGCC 59.931 47.826 0.00 0.00 45.98 3.93
1854 2258 3.956848 AGGGCTCAAATTTCCTTCATAGC 59.043 43.478 0.00 0.00 0.00 2.97
1903 2307 2.492484 CCGGTAGTACATCTATGCTCCC 59.508 54.545 2.06 0.00 0.00 4.30
1907 2311 2.296471 ACAGCCGGTAGTACATCTATGC 59.704 50.000 1.90 0.00 0.00 3.14
1940 2344 7.998964 CCAGGTTATTGAGTTTATTGGGTAGAT 59.001 37.037 0.00 0.00 0.00 1.98
1948 2352 6.790319 ACTGGACCAGGTTATTGAGTTTATT 58.210 36.000 25.34 0.00 35.51 1.40
2452 2864 7.123247 AGGTCCATCAAAATCCTAATGAACTTG 59.877 37.037 0.00 0.00 0.00 3.16
3089 3512 4.806640 CCTGCATAAGGGTTCAACAATT 57.193 40.909 0.00 0.00 43.15 2.32
3290 3713 8.344939 TCCCTAACCTGGTAATCAAGAATAAT 57.655 34.615 0.00 0.00 0.00 1.28
3716 4141 6.888632 ACCAGCTTCTTCACATATGAATCTTT 59.111 34.615 10.38 0.00 43.92 2.52
3783 4208 8.664798 GTTTGGGCTAAAACCATTTATTTGATC 58.335 33.333 0.00 0.00 37.93 2.92
3793 4218 5.622346 TTTGAAGTTTGGGCTAAAACCAT 57.378 34.783 0.00 0.00 40.26 3.55
3799 4224 4.219115 TGGACATTTGAAGTTTGGGCTAA 58.781 39.130 0.00 0.00 0.00 3.09
3811 4236 6.016360 ACGTTCAATGATCTTTGGACATTTGA 60.016 34.615 24.81 3.25 35.22 2.69
3843 4268 8.780846 AGTATCGTGGTCACAAAAATAATACA 57.219 30.769 1.90 0.00 0.00 2.29
3855 4280 2.490903 ACTGGTGTAGTATCGTGGTCAC 59.509 50.000 0.00 0.00 38.04 3.67
3972 4397 5.126396 GAGTCCAAACTCCAAATCCAAAG 57.874 43.478 0.00 0.00 45.26 2.77
4100 4714 7.757097 ATAGTTCACTTCTACTAATGCAACG 57.243 36.000 0.00 0.00 31.20 4.10
4101 4715 9.804758 ACTATAGTTCACTTCTACTAATGCAAC 57.195 33.333 0.00 0.00 31.20 4.17
4151 6201 3.490031 ATGCAGGCGGTGAACCACA 62.490 57.895 0.00 0.00 35.86 4.17
4159 6209 4.415150 CTGGGACATGCAGGCGGT 62.415 66.667 0.00 0.00 38.20 5.68
4188 6238 2.617274 GCAGGGTTGGTCGCAACTC 61.617 63.158 5.98 2.26 35.86 3.01
4309 6369 2.124612 CCCGCATCCATGTCTGCA 60.125 61.111 14.78 0.00 38.30 4.41
4689 6914 0.036388 GTGGGCTCAACATCTTCGGA 60.036 55.000 0.00 0.00 0.00 4.55
5321 7766 1.810606 CTCTGTGTGACGGGCTGACT 61.811 60.000 0.00 0.00 0.00 3.41
5333 7779 2.281761 CCCGCCAAAGCTCTGTGT 60.282 61.111 0.00 0.00 36.60 3.72
5432 7964 4.738998 TCTGCCGCCCACCATTGG 62.739 66.667 0.00 0.00 43.50 3.16
5988 9034 2.765689 TGGGTTGAAGGACAAATGGT 57.234 45.000 0.00 0.00 40.36 3.55
5993 9039 2.158475 AGCAGAATGGGTTGAAGGACAA 60.158 45.455 0.00 0.00 35.86 3.18
6355 9401 5.207768 GCTGCCACAATTTCAGTATATTCG 58.792 41.667 0.00 0.00 0.00 3.34
6382 9428 5.624344 TTAAAATTGGCATCCGTCGTTAA 57.376 34.783 0.00 0.00 0.00 2.01
6644 9691 1.247567 AGCACGTTGAATTCAAGGGG 58.752 50.000 32.73 31.40 45.10 4.79
6701 9758 4.586421 TGCAATTAAAACCCATCACTGTCA 59.414 37.500 0.00 0.00 0.00 3.58
6728 9785 9.896263 GTATTTCCCTACAATTCAACGTAAAAA 57.104 29.630 0.00 0.00 0.00 1.94
6729 9786 8.513774 GGTATTTCCCTACAATTCAACGTAAAA 58.486 33.333 0.00 0.00 0.00 1.52
6735 9792 9.965824 CATATTGGTATTTCCCTACAATTCAAC 57.034 33.333 0.00 0.00 34.77 3.18
7012 10069 4.209538 TCCAATGGAGGCATGACAAATAG 58.790 43.478 0.00 0.00 0.00 1.73
7194 10251 0.975556 TGGCTTCAGATCACCCGCTA 60.976 55.000 0.00 0.00 0.00 4.26
7286 10344 4.218312 AGTGCAGTTCTTTTTCAGGGAAT 58.782 39.130 0.00 0.00 0.00 3.01
7484 10549 3.313012 TGTAATGAACCTGAGACGGTG 57.687 47.619 0.00 0.00 37.36 4.94
7569 10634 1.061857 CGGCTGTTGGCAAAACAAAAC 59.938 47.619 0.00 0.00 44.01 2.43
7574 10639 2.211353 TTAACGGCTGTTGGCAAAAC 57.789 45.000 21.37 0.00 44.01 2.43
7575 10640 2.961526 TTTAACGGCTGTTGGCAAAA 57.038 40.000 21.37 10.32 44.01 2.44
7576 10641 2.427453 TCTTTTAACGGCTGTTGGCAAA 59.573 40.909 21.37 14.65 44.01 3.68
7577 10642 2.025155 TCTTTTAACGGCTGTTGGCAA 58.975 42.857 21.37 4.53 44.01 4.52
7578 10643 1.681538 TCTTTTAACGGCTGTTGGCA 58.318 45.000 21.37 0.00 44.01 4.92
7579 10644 2.227865 TGATCTTTTAACGGCTGTTGGC 59.772 45.455 21.37 3.13 39.12 4.52
7580 10645 3.751175 TCTGATCTTTTAACGGCTGTTGG 59.249 43.478 21.37 8.40 39.12 3.77
7581 10646 5.356882 TTCTGATCTTTTAACGGCTGTTG 57.643 39.130 21.37 4.10 39.12 3.33
7582 10647 7.681939 TTATTCTGATCTTTTAACGGCTGTT 57.318 32.000 16.59 16.59 42.19 3.16
7583 10648 7.681939 TTTATTCTGATCTTTTAACGGCTGT 57.318 32.000 0.00 0.00 0.00 4.40
7584 10649 7.645340 CCATTTATTCTGATCTTTTAACGGCTG 59.355 37.037 0.00 0.00 0.00 4.85
7585 10650 7.339466 ACCATTTATTCTGATCTTTTAACGGCT 59.661 33.333 0.00 0.00 0.00 5.52
7586 10651 7.432252 CACCATTTATTCTGATCTTTTAACGGC 59.568 37.037 0.00 0.00 0.00 5.68
7587 10652 7.915397 CCACCATTTATTCTGATCTTTTAACGG 59.085 37.037 0.00 0.00 0.00 4.44
7588 10653 8.673711 TCCACCATTTATTCTGATCTTTTAACG 58.326 33.333 0.00 0.00 0.00 3.18
7660 10725 1.115326 AGGCTGTCAAACTTTGGGCC 61.115 55.000 18.08 18.08 39.53 5.80
7713 10778 5.051816 ACTGCATGTTTTGGAACTTTGATG 58.948 37.500 0.00 0.00 36.70 3.07
7714 10779 5.280654 ACTGCATGTTTTGGAACTTTGAT 57.719 34.783 0.00 0.00 36.70 2.57
7715 10780 4.734398 ACTGCATGTTTTGGAACTTTGA 57.266 36.364 0.00 0.00 36.70 2.69
7716 10781 5.463061 CCTAACTGCATGTTTTGGAACTTTG 59.537 40.000 6.82 0.00 39.89 2.77
7717 10782 5.128663 ACCTAACTGCATGTTTTGGAACTTT 59.871 36.000 18.14 3.60 39.89 2.66
7758 11744 7.013369 ACCTCAGGTTTGAACTGTTAAAGATTC 59.987 37.037 0.00 0.00 37.25 2.52
8039 12028 6.726490 AAGTGTCTCAACCTTAGTACAAGA 57.274 37.500 0.00 0.00 0.00 3.02
8109 12104 1.816835 GCTTTAGGGCAGGTTGGTAAC 59.183 52.381 0.00 0.00 0.00 2.50
8197 12194 8.193953 TGACATACAGGATTTAGATATCTGCA 57.806 34.615 15.79 1.82 0.00 4.41
8216 12213 5.669904 TGATGGTTTAGGGATTCCTGACATA 59.330 40.000 1.39 0.00 44.61 2.29
8633 12640 6.661304 ACTAACGTAATATCTTGGTAGGGG 57.339 41.667 0.00 0.00 0.00 4.79
8639 12646 9.813446 ACCTTCTTTACTAACGTAATATCTTGG 57.187 33.333 0.00 0.00 35.65 3.61
8804 12811 4.402474 TCTGAACTCGCTATTCCAGATTGA 59.598 41.667 0.00 0.00 0.00 2.57
9206 13213 5.512753 TGGCGTTTCGGTACACTATATAA 57.487 39.130 0.00 0.00 0.00 0.98
9225 13232 6.859420 ATACAAGTTTCAAAACCAATTGGC 57.141 33.333 24.79 5.38 39.71 4.52
9373 13381 7.884816 TTTTCCTATCTCTACGTTTTGAGTG 57.115 36.000 0.00 0.00 0.00 3.51
9411 13419 2.038659 TCCAGGATGCATGACGACATA 58.961 47.619 2.46 0.00 35.09 2.29
9596 13638 3.011032 AGGATCCAAGAGGTGCTTTCATT 59.989 43.478 15.82 0.00 33.60 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.