Multiple sequence alignment - TraesCS4D01G173600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G173600 chr4D 100.000 2998 0 0 1 2998 301526530 301529527 0.000000e+00 5537
1 TraesCS4D01G173600 chr4A 92.943 1998 63 24 150 2113 179543464 179541511 0.000000e+00 2837
2 TraesCS4D01G173600 chr4B 89.511 1554 67 35 206 1718 375414674 375416172 0.000000e+00 1879
3 TraesCS4D01G173600 chr4B 94.708 359 10 2 1764 2113 375416242 375416600 1.570000e-152 549
4 TraesCS4D01G173600 chr5D 94.643 672 32 4 2291 2960 514300722 514301391 0.000000e+00 1038
5 TraesCS4D01G173600 chr5D 95.281 551 23 3 2293 2842 558863259 558862711 0.000000e+00 870
6 TraesCS4D01G173600 chr5D 98.519 135 2 0 1 135 454669518 454669384 3.860000e-59 239
7 TraesCS4D01G173600 chr5D 93.548 155 6 2 1 152 130034117 130034270 8.360000e-56 228
8 TraesCS4D01G173600 chr5D 93.496 123 8 0 2838 2960 558862275 558862153 1.840000e-42 183
9 TraesCS4D01G173600 chr1D 90.948 707 39 8 2298 2998 124073287 124072600 0.000000e+00 928
10 TraesCS4D01G173600 chr1D 97.794 136 3 0 1 136 41220288 41220153 5.000000e-58 235
11 TraesCS4D01G173600 chr2A 86.182 275 38 0 1113 1387 57445365 57445639 6.280000e-77 298
12 TraesCS4D01G173600 chr2A 84.815 270 38 3 1123 1390 57462379 57462111 4.930000e-68 268
13 TraesCS4D01G173600 chr2B 85.305 279 40 1 1113 1390 88627674 88627396 1.360000e-73 287
14 TraesCS4D01G173600 chr2B 94.059 101 4 2 2098 2198 738486649 738486747 5.180000e-33 152
15 TraesCS4D01G173600 chr2B 89.831 118 7 4 2110 2223 550511207 550511323 2.410000e-31 147
16 TraesCS4D01G173600 chr2D 85.185 270 40 0 1113 1382 55929093 55929362 8.190000e-71 278
17 TraesCS4D01G173600 chr2D 83.103 290 47 2 1106 1394 56077706 56077418 2.290000e-66 263
18 TraesCS4D01G173600 chr2D 98.519 135 2 0 1 135 460101274 460101408 3.860000e-59 239
19 TraesCS4D01G173600 chr2D 98.889 90 1 0 2110 2199 49878640 49878729 8.600000e-36 161
20 TraesCS4D01G173600 chr2D 94.059 101 5 1 2110 2210 547844722 547844623 5.180000e-33 152
21 TraesCS4D01G173600 chr3D 98.519 135 2 0 1 135 452311938 452312072 3.860000e-59 239
22 TraesCS4D01G173600 chr5B 97.794 136 3 0 1 136 323368897 323368762 5.000000e-58 235
23 TraesCS4D01G173600 chr1B 97.794 136 3 0 1 136 443786771 443786906 5.000000e-58 235
24 TraesCS4D01G173600 chr1B 98.901 91 1 0 2109 2199 230031802 230031892 2.390000e-36 163
25 TraesCS4D01G173600 chr3B 94.595 148 8 0 1 148 608391002 608390855 2.320000e-56 230
26 TraesCS4D01G173600 chr3B 96.842 95 2 1 2109 2202 719780151 719780245 1.110000e-34 158
27 TraesCS4D01G173600 chr7B 94.558 147 7 1 1 147 21312601 21312746 3.010000e-55 226
28 TraesCS4D01G173600 chr5A 97.849 93 2 0 2105 2197 475528939 475529031 8.600000e-36 161
29 TraesCS4D01G173600 chr6D 94.118 102 5 1 2097 2197 464673596 464673697 1.440000e-33 154
30 TraesCS4D01G173600 chr6A 95.789 95 4 0 2103 2197 354475944 354476038 1.440000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G173600 chr4D 301526530 301529527 2997 False 5537.0 5537 100.0000 1 2998 1 chr4D.!!$F1 2997
1 TraesCS4D01G173600 chr4A 179541511 179543464 1953 True 2837.0 2837 92.9430 150 2113 1 chr4A.!!$R1 1963
2 TraesCS4D01G173600 chr4B 375414674 375416600 1926 False 1214.0 1879 92.1095 206 2113 2 chr4B.!!$F1 1907
3 TraesCS4D01G173600 chr5D 514300722 514301391 669 False 1038.0 1038 94.6430 2291 2960 1 chr5D.!!$F2 669
4 TraesCS4D01G173600 chr5D 558862153 558863259 1106 True 526.5 870 94.3885 2293 2960 2 chr5D.!!$R2 667
5 TraesCS4D01G173600 chr1D 124072600 124073287 687 True 928.0 928 90.9480 2298 2998 1 chr1D.!!$R2 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.0 0.0 0.0 0.0 3.20 F
50 51 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.0 0.0 0.0 0.0 3.20 F
1412 1473 0.366871 CGTCTCCGTTTCATTCTGCG 59.633 55.0 0.0 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1524 0.038892 CCATGCATTATTCGCTGGCC 60.039 55.0 0.00 0.0 0.00 5.36 R
1648 1729 0.323908 CTGAGAACCCCTCCGACTCT 60.324 60.0 0.00 0.0 41.25 3.24 R
2356 2477 0.108992 GTCTTACGTCGTGCATCCCA 60.109 55.0 8.47 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.191539 GCACGTGCTAGAGCTGGC 61.192 66.667 32.55 1.87 42.66 4.85
19 20 2.575993 CACGTGCTAGAGCTGGCT 59.424 61.111 0.82 0.00 42.66 4.75
20 21 1.518133 CACGTGCTAGAGCTGGCTC 60.518 63.158 14.02 14.02 42.66 4.70
28 29 4.996976 GAGCTGGCTCTTCACGAA 57.003 55.556 14.51 0.00 39.80 3.85
29 30 2.748268 GAGCTGGCTCTTCACGAAG 58.252 57.895 14.51 0.08 39.80 3.79
30 31 0.244994 GAGCTGGCTCTTCACGAAGA 59.755 55.000 14.51 9.08 44.47 2.87
36 37 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
37 38 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
38 39 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
39 40 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
40 41 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
41 42 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
42 43 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
43 44 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
44 45 0.806492 CGAAGAGCCCGCTTACCTTC 60.806 60.000 6.57 6.57 0.00 3.46
45 46 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
46 47 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
47 48 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
48 49 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
49 50 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
50 51 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
51 52 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
52 53 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
53 54 2.104170 CCGCTTACCTTCTCTCTCCTT 58.896 52.381 0.00 0.00 0.00 3.36
54 55 2.498078 CCGCTTACCTTCTCTCTCCTTT 59.502 50.000 0.00 0.00 0.00 3.11
55 56 3.055747 CCGCTTACCTTCTCTCTCCTTTT 60.056 47.826 0.00 0.00 0.00 2.27
56 57 4.177783 CGCTTACCTTCTCTCTCCTTTTC 58.822 47.826 0.00 0.00 0.00 2.29
57 58 4.081917 CGCTTACCTTCTCTCTCCTTTTCT 60.082 45.833 0.00 0.00 0.00 2.52
58 59 5.416083 GCTTACCTTCTCTCTCCTTTTCTC 58.584 45.833 0.00 0.00 0.00 2.87
59 60 5.186992 GCTTACCTTCTCTCTCCTTTTCTCT 59.813 44.000 0.00 0.00 0.00 3.10
60 61 6.295632 GCTTACCTTCTCTCTCCTTTTCTCTT 60.296 42.308 0.00 0.00 0.00 2.85
61 62 7.619512 TTACCTTCTCTCTCCTTTTCTCTTT 57.380 36.000 0.00 0.00 0.00 2.52
62 63 6.109156 ACCTTCTCTCTCCTTTTCTCTTTC 57.891 41.667 0.00 0.00 0.00 2.62
63 64 5.012664 ACCTTCTCTCTCCTTTTCTCTTTCC 59.987 44.000 0.00 0.00 0.00 3.13
64 65 5.248248 CCTTCTCTCTCCTTTTCTCTTTCCT 59.752 44.000 0.00 0.00 0.00 3.36
65 66 5.993748 TCTCTCTCCTTTTCTCTTTCCTC 57.006 43.478 0.00 0.00 0.00 3.71
66 67 4.775253 TCTCTCTCCTTTTCTCTTTCCTCC 59.225 45.833 0.00 0.00 0.00 4.30
67 68 4.493618 TCTCTCCTTTTCTCTTTCCTCCA 58.506 43.478 0.00 0.00 0.00 3.86
68 69 4.907875 TCTCTCCTTTTCTCTTTCCTCCAA 59.092 41.667 0.00 0.00 0.00 3.53
69 70 4.974399 TCTCCTTTTCTCTTTCCTCCAAC 58.026 43.478 0.00 0.00 0.00 3.77
70 71 4.660771 TCTCCTTTTCTCTTTCCTCCAACT 59.339 41.667 0.00 0.00 0.00 3.16
71 72 5.844516 TCTCCTTTTCTCTTTCCTCCAACTA 59.155 40.000 0.00 0.00 0.00 2.24
72 73 6.329197 TCTCCTTTTCTCTTTCCTCCAACTAA 59.671 38.462 0.00 0.00 0.00 2.24
73 74 6.534634 TCCTTTTCTCTTTCCTCCAACTAAG 58.465 40.000 0.00 0.00 0.00 2.18
74 75 5.182190 CCTTTTCTCTTTCCTCCAACTAAGC 59.818 44.000 0.00 0.00 0.00 3.09
75 76 4.974645 TTCTCTTTCCTCCAACTAAGCA 57.025 40.909 0.00 0.00 0.00 3.91
76 77 4.543590 TCTCTTTCCTCCAACTAAGCAG 57.456 45.455 0.00 0.00 0.00 4.24
77 78 4.160329 TCTCTTTCCTCCAACTAAGCAGA 58.840 43.478 0.00 0.00 0.00 4.26
78 79 4.593206 TCTCTTTCCTCCAACTAAGCAGAA 59.407 41.667 0.00 0.00 0.00 3.02
79 80 5.071788 TCTCTTTCCTCCAACTAAGCAGAAA 59.928 40.000 0.00 0.00 0.00 2.52
80 81 5.880901 TCTTTCCTCCAACTAAGCAGAAAT 58.119 37.500 0.00 0.00 0.00 2.17
81 82 7.016153 TCTTTCCTCCAACTAAGCAGAAATA 57.984 36.000 0.00 0.00 0.00 1.40
82 83 7.633789 TCTTTCCTCCAACTAAGCAGAAATAT 58.366 34.615 0.00 0.00 0.00 1.28
83 84 8.768397 TCTTTCCTCCAACTAAGCAGAAATATA 58.232 33.333 0.00 0.00 0.00 0.86
84 85 8.732746 TTTCCTCCAACTAAGCAGAAATATAC 57.267 34.615 0.00 0.00 0.00 1.47
85 86 7.676683 TCCTCCAACTAAGCAGAAATATACT 57.323 36.000 0.00 0.00 0.00 2.12
86 87 8.777578 TCCTCCAACTAAGCAGAAATATACTA 57.222 34.615 0.00 0.00 0.00 1.82
87 88 8.861086 TCCTCCAACTAAGCAGAAATATACTAG 58.139 37.037 0.00 0.00 0.00 2.57
88 89 8.643324 CCTCCAACTAAGCAGAAATATACTAGT 58.357 37.037 0.00 0.00 0.00 2.57
129 130 4.748892 TGACTCAGCTCTATTGTACTTGC 58.251 43.478 0.00 0.00 0.00 4.01
130 131 4.464244 TGACTCAGCTCTATTGTACTTGCT 59.536 41.667 0.00 0.00 0.00 3.91
131 132 5.004922 ACTCAGCTCTATTGTACTTGCTC 57.995 43.478 0.00 0.00 0.00 4.26
132 133 4.709397 ACTCAGCTCTATTGTACTTGCTCT 59.291 41.667 0.00 0.00 0.00 4.09
133 134 5.888724 ACTCAGCTCTATTGTACTTGCTCTA 59.111 40.000 0.00 0.00 0.00 2.43
134 135 6.378564 ACTCAGCTCTATTGTACTTGCTCTAA 59.621 38.462 0.00 0.00 0.00 2.10
135 136 6.800543 TCAGCTCTATTGTACTTGCTCTAAG 58.199 40.000 0.00 0.00 42.30 2.18
136 137 5.982516 CAGCTCTATTGTACTTGCTCTAAGG 59.017 44.000 0.00 0.00 40.84 2.69
137 138 5.894393 AGCTCTATTGTACTTGCTCTAAGGA 59.106 40.000 0.00 0.00 40.84 3.36
138 139 6.381420 AGCTCTATTGTACTTGCTCTAAGGAA 59.619 38.462 0.00 0.00 40.84 3.36
139 140 7.042335 GCTCTATTGTACTTGCTCTAAGGAAA 58.958 38.462 0.00 0.00 40.84 3.13
140 141 7.713073 GCTCTATTGTACTTGCTCTAAGGAAAT 59.287 37.037 0.00 0.00 40.84 2.17
141 142 8.948631 TCTATTGTACTTGCTCTAAGGAAATG 57.051 34.615 0.00 0.00 40.84 2.32
142 143 7.987458 TCTATTGTACTTGCTCTAAGGAAATGG 59.013 37.037 0.00 0.00 40.84 3.16
143 144 5.755409 TGTACTTGCTCTAAGGAAATGGA 57.245 39.130 0.00 0.00 40.84 3.41
144 145 5.734720 TGTACTTGCTCTAAGGAAATGGAG 58.265 41.667 0.00 0.00 40.84 3.86
145 146 4.227864 ACTTGCTCTAAGGAAATGGAGG 57.772 45.455 0.00 0.00 40.84 4.30
146 147 2.717639 TGCTCTAAGGAAATGGAGGC 57.282 50.000 0.00 0.00 0.00 4.70
147 148 1.915489 TGCTCTAAGGAAATGGAGGCA 59.085 47.619 0.00 0.00 0.00 4.75
148 149 2.092753 TGCTCTAAGGAAATGGAGGCAG 60.093 50.000 0.00 0.00 0.00 4.85
194 195 9.935241 TGATCTAATGCTCCATTATTTCTACTC 57.065 33.333 0.00 0.00 36.03 2.59
195 196 9.377312 GATCTAATGCTCCATTATTTCTACTCC 57.623 37.037 0.00 0.00 36.03 3.85
196 197 7.680730 TCTAATGCTCCATTATTTCTACTCCC 58.319 38.462 0.00 0.00 36.03 4.30
197 198 4.706842 TGCTCCATTATTTCTACTCCCC 57.293 45.455 0.00 0.00 0.00 4.81
198 199 4.044308 TGCTCCATTATTTCTACTCCCCA 58.956 43.478 0.00 0.00 0.00 4.96
199 200 4.103153 TGCTCCATTATTTCTACTCCCCAG 59.897 45.833 0.00 0.00 0.00 4.45
200 201 4.103311 GCTCCATTATTTCTACTCCCCAGT 59.897 45.833 0.00 0.00 36.55 4.00
201 202 5.615289 CTCCATTATTTCTACTCCCCAGTG 58.385 45.833 0.00 0.00 33.62 3.66
202 203 4.412199 TCCATTATTTCTACTCCCCAGTGG 59.588 45.833 0.63 0.63 33.62 4.00
203 204 4.412199 CCATTATTTCTACTCCCCAGTGGA 59.588 45.833 11.95 0.00 42.41 4.02
298 300 1.823899 CCGGCAGAAAGGGCATACC 60.824 63.158 0.00 0.00 40.67 2.73
318 320 1.090625 TGTTGTGCGTGGCGTTAGTT 61.091 50.000 0.00 0.00 0.00 2.24
422 428 1.451028 GACCAGCACCATCAGCCTC 60.451 63.158 0.00 0.00 0.00 4.70
433 439 3.249091 CCATCAGCCTCGATCGATTAAG 58.751 50.000 19.78 6.69 0.00 1.85
447 453 3.055819 TCGATTAAGAAAGAGCAGCCAGT 60.056 43.478 0.00 0.00 0.00 4.00
619 625 1.358046 GCCGCTTGCATCTTCCATC 59.642 57.895 0.00 0.00 40.77 3.51
620 626 2.028130 CCGCTTGCATCTTCCATCC 58.972 57.895 0.00 0.00 0.00 3.51
621 627 0.749091 CCGCTTGCATCTTCCATCCA 60.749 55.000 0.00 0.00 0.00 3.41
622 628 1.315690 CGCTTGCATCTTCCATCCAT 58.684 50.000 0.00 0.00 0.00 3.41
623 629 1.001706 CGCTTGCATCTTCCATCCATG 60.002 52.381 0.00 0.00 0.00 3.66
658 668 8.415950 TTTATTCCTATTCTTTTCCTTGCACA 57.584 30.769 0.00 0.00 0.00 4.57
659 669 5.964958 TTCCTATTCTTTTCCTTGCACAG 57.035 39.130 0.00 0.00 0.00 3.66
660 670 3.758554 TCCTATTCTTTTCCTTGCACAGC 59.241 43.478 0.00 0.00 0.00 4.40
661 671 3.507233 CCTATTCTTTTCCTTGCACAGCA 59.493 43.478 0.00 0.00 36.47 4.41
662 672 2.869233 TTCTTTTCCTTGCACAGCAC 57.131 45.000 0.00 0.00 38.71 4.40
669 679 2.591429 TTGCACAGCACTGGACGG 60.591 61.111 2.21 0.00 38.71 4.79
738 767 1.724429 TAAAATCCACACGTACGCCC 58.276 50.000 16.72 0.00 0.00 6.13
895 946 3.223435 TGGAAAGAGTCTCTCACGACTT 58.777 45.455 1.96 0.00 43.91 3.01
896 947 3.004839 TGGAAAGAGTCTCTCACGACTTG 59.995 47.826 1.96 0.00 43.91 3.16
897 948 3.004944 GGAAAGAGTCTCTCACGACTTGT 59.995 47.826 1.96 0.00 43.91 3.16
1100 1153 4.760047 GCCGAGCTTCTGGCCGAA 62.760 66.667 13.05 3.93 45.73 4.30
1392 1448 1.800315 CTTCGGGTACGTGCGTCTG 60.800 63.158 0.00 0.00 41.85 3.51
1412 1473 0.366871 CGTCTCCGTTTCATTCTGCG 59.633 55.000 0.00 0.00 0.00 5.18
1436 1497 1.591158 GCAACGAGAGAACGTGTTTCA 59.409 47.619 0.00 0.00 45.83 2.69
1446 1507 4.412207 AGAACGTGTTTCAACTTTCAAGC 58.588 39.130 0.00 0.00 36.57 4.01
1447 1508 2.780993 ACGTGTTTCAACTTTCAAGCG 58.219 42.857 0.00 0.00 0.00 4.68
1448 1509 2.108700 CGTGTTTCAACTTTCAAGCGG 58.891 47.619 0.00 0.00 0.00 5.52
1648 1729 0.824109 CCTGCACGTCCCAGAATCTA 59.176 55.000 12.96 0.00 32.03 1.98
1761 1870 7.452189 GGTAATAGAGAATCCCTTGCTACTACT 59.548 40.741 0.00 0.00 33.66 2.57
1762 1871 9.517868 GTAATAGAGAATCCCTTGCTACTACTA 57.482 37.037 0.00 0.00 33.66 1.82
1804 1922 6.628919 TGATTTCTGGCATAGAACATGATG 57.371 37.500 0.00 0.00 44.84 3.07
1892 2010 2.997315 CAGCTGGTGGACGAGGGA 60.997 66.667 5.57 0.00 0.00 4.20
1911 2029 2.660258 ATACAGGATCCGCGGCAACC 62.660 60.000 23.51 22.15 0.00 3.77
2005 2123 1.871039 CTTCGTCCCGTGAAAACACAT 59.129 47.619 0.00 0.00 0.00 3.21
2094 2215 1.666700 TGTAAACAACGGCCGATATGC 59.333 47.619 35.90 16.19 0.00 3.14
2113 2234 2.095466 TGCGGCAAAACAAGCATAGTAC 60.095 45.455 0.00 0.00 34.39 2.73
2114 2235 2.161609 GCGGCAAAACAAGCATAGTACT 59.838 45.455 0.00 0.00 0.00 2.73
2115 2236 3.727970 GCGGCAAAACAAGCATAGTACTC 60.728 47.826 0.00 0.00 0.00 2.59
2116 2237 3.181510 CGGCAAAACAAGCATAGTACTCC 60.182 47.826 0.00 0.00 0.00 3.85
2117 2238 3.128764 GGCAAAACAAGCATAGTACTCCC 59.871 47.826 0.00 0.00 0.00 4.30
2118 2239 4.010349 GCAAAACAAGCATAGTACTCCCT 58.990 43.478 0.00 0.00 0.00 4.20
2119 2240 4.095036 GCAAAACAAGCATAGTACTCCCTC 59.905 45.833 0.00 0.00 0.00 4.30
2120 2241 4.489306 AAACAAGCATAGTACTCCCTCC 57.511 45.455 0.00 0.00 0.00 4.30
2121 2242 2.032620 ACAAGCATAGTACTCCCTCCG 58.967 52.381 0.00 0.00 0.00 4.63
2122 2243 2.032620 CAAGCATAGTACTCCCTCCGT 58.967 52.381 0.00 0.00 0.00 4.69
2123 2244 3.220110 CAAGCATAGTACTCCCTCCGTA 58.780 50.000 0.00 0.00 0.00 4.02
2124 2245 3.589951 AGCATAGTACTCCCTCCGTAA 57.410 47.619 0.00 0.00 0.00 3.18
2125 2246 3.907221 AGCATAGTACTCCCTCCGTAAA 58.093 45.455 0.00 0.00 0.00 2.01
2126 2247 3.635836 AGCATAGTACTCCCTCCGTAAAC 59.364 47.826 0.00 0.00 0.00 2.01
2127 2248 3.635836 GCATAGTACTCCCTCCGTAAACT 59.364 47.826 0.00 0.00 0.00 2.66
2128 2249 4.823989 GCATAGTACTCCCTCCGTAAACTA 59.176 45.833 0.00 0.00 0.00 2.24
2129 2250 5.300286 GCATAGTACTCCCTCCGTAAACTAA 59.700 44.000 0.00 0.00 0.00 2.24
2130 2251 6.015603 GCATAGTACTCCCTCCGTAAACTAAT 60.016 42.308 0.00 0.00 0.00 1.73
2131 2252 7.175641 GCATAGTACTCCCTCCGTAAACTAATA 59.824 40.741 0.00 0.00 0.00 0.98
2132 2253 9.240734 CATAGTACTCCCTCCGTAAACTAATAT 57.759 37.037 0.00 0.00 0.00 1.28
2135 2256 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2136 2257 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2137 2258 8.773033 ACTCCCTCCGTAAACTAATATAAGAA 57.227 34.615 0.00 0.00 0.00 2.52
2138 2259 9.377238 ACTCCCTCCGTAAACTAATATAAGAAT 57.623 33.333 0.00 0.00 0.00 2.40
2139 2260 9.640963 CTCCCTCCGTAAACTAATATAAGAATG 57.359 37.037 0.00 0.00 0.00 2.67
2140 2261 9.151177 TCCCTCCGTAAACTAATATAAGAATGT 57.849 33.333 0.00 0.00 0.00 2.71
2141 2262 9.774413 CCCTCCGTAAACTAATATAAGAATGTT 57.226 33.333 0.00 0.00 0.00 2.71
2190 2311 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2191 2312 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2192 2313 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2193 2314 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2194 2315 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2200 2321 6.506500 TTAGTTTACAGAGGGAGTAGAACG 57.493 41.667 0.00 0.00 0.00 3.95
2201 2322 4.405548 AGTTTACAGAGGGAGTAGAACGT 58.594 43.478 0.00 0.00 0.00 3.99
2202 2323 5.564550 AGTTTACAGAGGGAGTAGAACGTA 58.435 41.667 0.00 0.00 0.00 3.57
2203 2324 6.006449 AGTTTACAGAGGGAGTAGAACGTAA 58.994 40.000 0.00 0.00 0.00 3.18
2204 2325 6.491403 AGTTTACAGAGGGAGTAGAACGTAAA 59.509 38.462 0.00 0.00 0.00 2.01
2205 2326 7.178097 AGTTTACAGAGGGAGTAGAACGTAAAT 59.822 37.037 0.00 0.00 32.21 1.40
2206 2327 5.579564 ACAGAGGGAGTAGAACGTAAATC 57.420 43.478 0.00 0.00 0.00 2.17
2207 2328 5.014858 ACAGAGGGAGTAGAACGTAAATCA 58.985 41.667 0.00 0.00 0.00 2.57
2208 2329 5.479375 ACAGAGGGAGTAGAACGTAAATCAA 59.521 40.000 0.00 0.00 0.00 2.57
2209 2330 6.014840 ACAGAGGGAGTAGAACGTAAATCAAA 60.015 38.462 0.00 0.00 0.00 2.69
2210 2331 6.310711 CAGAGGGAGTAGAACGTAAATCAAAC 59.689 42.308 0.00 0.00 0.00 2.93
2211 2332 6.014840 AGAGGGAGTAGAACGTAAATCAAACA 60.015 38.462 0.00 0.00 0.00 2.83
2212 2333 5.930569 AGGGAGTAGAACGTAAATCAAACAC 59.069 40.000 0.00 0.00 0.00 3.32
2213 2334 5.930569 GGGAGTAGAACGTAAATCAAACACT 59.069 40.000 0.00 0.00 0.00 3.55
2214 2335 6.090493 GGGAGTAGAACGTAAATCAAACACTC 59.910 42.308 0.00 0.00 0.00 3.51
2215 2336 6.183359 GGAGTAGAACGTAAATCAAACACTCG 60.183 42.308 0.00 0.00 31.62 4.18
2216 2337 6.441274 AGTAGAACGTAAATCAAACACTCGA 58.559 36.000 0.00 0.00 0.00 4.04
2217 2338 6.919662 AGTAGAACGTAAATCAAACACTCGAA 59.080 34.615 0.00 0.00 0.00 3.71
2218 2339 6.780706 AGAACGTAAATCAAACACTCGAAT 57.219 33.333 0.00 0.00 0.00 3.34
2219 2340 7.186021 AGAACGTAAATCAAACACTCGAATT 57.814 32.000 0.00 0.00 0.00 2.17
2220 2341 7.069569 AGAACGTAAATCAAACACTCGAATTG 58.930 34.615 0.00 0.00 0.00 2.32
2221 2342 6.533819 ACGTAAATCAAACACTCGAATTGA 57.466 33.333 0.78 3.42 37.47 2.57
2222 2343 6.950545 ACGTAAATCAAACACTCGAATTGAA 58.049 32.000 0.78 0.00 36.72 2.69
2223 2344 7.069569 ACGTAAATCAAACACTCGAATTGAAG 58.930 34.615 0.78 0.00 36.72 3.02
2224 2345 7.042321 ACGTAAATCAAACACTCGAATTGAAGA 60.042 33.333 0.78 0.00 36.72 2.87
2225 2346 7.266335 CGTAAATCAAACACTCGAATTGAAGAC 59.734 37.037 0.78 2.97 36.72 3.01
2226 2347 6.618287 AATCAAACACTCGAATTGAAGACA 57.382 33.333 0.78 0.00 36.72 3.41
2227 2348 5.403897 TCAAACACTCGAATTGAAGACAC 57.596 39.130 0.78 0.00 30.60 3.67
2228 2349 4.873259 TCAAACACTCGAATTGAAGACACA 59.127 37.500 0.78 0.00 30.60 3.72
2229 2350 5.527214 TCAAACACTCGAATTGAAGACACAT 59.473 36.000 0.78 0.00 30.60 3.21
2230 2351 6.038161 TCAAACACTCGAATTGAAGACACATT 59.962 34.615 0.78 0.00 30.60 2.71
2231 2352 6.377327 AACACTCGAATTGAAGACACATTT 57.623 33.333 0.78 0.00 0.00 2.32
2232 2353 6.377327 ACACTCGAATTGAAGACACATTTT 57.623 33.333 0.78 0.00 0.00 1.82
2233 2354 6.430451 ACACTCGAATTGAAGACACATTTTC 58.570 36.000 0.78 0.00 0.00 2.29
2234 2355 5.853282 CACTCGAATTGAAGACACATTTTCC 59.147 40.000 0.00 0.00 0.00 3.13
2235 2356 5.765182 ACTCGAATTGAAGACACATTTTCCT 59.235 36.000 0.00 0.00 0.00 3.36
2236 2357 6.000891 TCGAATTGAAGACACATTTTCCTG 57.999 37.500 0.00 0.00 0.00 3.86
2237 2358 4.618489 CGAATTGAAGACACATTTTCCTGC 59.382 41.667 0.00 0.00 0.00 4.85
2238 2359 4.525912 ATTGAAGACACATTTTCCTGCC 57.474 40.909 0.00 0.00 0.00 4.85
2239 2360 2.942804 TGAAGACACATTTTCCTGCCA 58.057 42.857 0.00 0.00 0.00 4.92
2240 2361 3.499338 TGAAGACACATTTTCCTGCCAT 58.501 40.909 0.00 0.00 0.00 4.40
2241 2362 3.896888 TGAAGACACATTTTCCTGCCATT 59.103 39.130 0.00 0.00 0.00 3.16
2242 2363 5.076182 TGAAGACACATTTTCCTGCCATTA 58.924 37.500 0.00 0.00 0.00 1.90
2243 2364 5.538053 TGAAGACACATTTTCCTGCCATTAA 59.462 36.000 0.00 0.00 0.00 1.40
2244 2365 6.211184 TGAAGACACATTTTCCTGCCATTAAT 59.789 34.615 0.00 0.00 0.00 1.40
2245 2366 6.610075 AGACACATTTTCCTGCCATTAATT 57.390 33.333 0.00 0.00 0.00 1.40
2246 2367 7.008021 AGACACATTTTCCTGCCATTAATTT 57.992 32.000 0.00 0.00 0.00 1.82
2247 2368 7.452562 AGACACATTTTCCTGCCATTAATTTT 58.547 30.769 0.00 0.00 0.00 1.82
2248 2369 7.603784 AGACACATTTTCCTGCCATTAATTTTC 59.396 33.333 0.00 0.00 0.00 2.29
2249 2370 6.368516 ACACATTTTCCTGCCATTAATTTTCG 59.631 34.615 0.00 0.00 0.00 3.46
2250 2371 6.368516 CACATTTTCCTGCCATTAATTTTCGT 59.631 34.615 0.00 0.00 0.00 3.85
2251 2372 6.368516 ACATTTTCCTGCCATTAATTTTCGTG 59.631 34.615 0.00 0.00 0.00 4.35
2252 2373 5.713792 TTTCCTGCCATTAATTTTCGTGA 57.286 34.783 0.00 0.00 0.00 4.35
2253 2374 5.913137 TTCCTGCCATTAATTTTCGTGAT 57.087 34.783 0.00 0.00 0.00 3.06
2254 2375 7.397892 TTTCCTGCCATTAATTTTCGTGATA 57.602 32.000 0.00 0.00 0.00 2.15
2255 2376 7.581213 TTCCTGCCATTAATTTTCGTGATAT 57.419 32.000 0.00 0.00 0.00 1.63
2256 2377 7.581213 TCCTGCCATTAATTTTCGTGATATT 57.419 32.000 0.00 0.00 0.00 1.28
2257 2378 7.648142 TCCTGCCATTAATTTTCGTGATATTC 58.352 34.615 0.00 0.00 0.00 1.75
2258 2379 6.863126 CCTGCCATTAATTTTCGTGATATTCC 59.137 38.462 0.00 0.00 0.00 3.01
2259 2380 6.744112 TGCCATTAATTTTCGTGATATTCCC 58.256 36.000 0.00 0.00 0.00 3.97
2260 2381 6.549364 TGCCATTAATTTTCGTGATATTCCCT 59.451 34.615 0.00 0.00 0.00 4.20
2261 2382 7.721842 TGCCATTAATTTTCGTGATATTCCCTA 59.278 33.333 0.00 0.00 0.00 3.53
2262 2383 8.237267 GCCATTAATTTTCGTGATATTCCCTAG 58.763 37.037 0.00 0.00 0.00 3.02
2263 2384 9.284968 CCATTAATTTTCGTGATATTCCCTAGT 57.715 33.333 0.00 0.00 0.00 2.57
2267 2388 6.995511 TTTTCGTGATATTCCCTAGTTTGG 57.004 37.500 0.00 0.00 0.00 3.28
2268 2389 5.687166 TTCGTGATATTCCCTAGTTTGGT 57.313 39.130 0.00 0.00 0.00 3.67
2269 2390 5.687166 TCGTGATATTCCCTAGTTTGGTT 57.313 39.130 0.00 0.00 0.00 3.67
2270 2391 6.795144 TCGTGATATTCCCTAGTTTGGTTA 57.205 37.500 0.00 0.00 0.00 2.85
2271 2392 7.369551 TCGTGATATTCCCTAGTTTGGTTAT 57.630 36.000 0.00 0.00 0.00 1.89
2272 2393 7.214381 TCGTGATATTCCCTAGTTTGGTTATG 58.786 38.462 0.00 0.00 0.00 1.90
2273 2394 7.070198 TCGTGATATTCCCTAGTTTGGTTATGA 59.930 37.037 0.00 0.00 0.00 2.15
2274 2395 7.713507 CGTGATATTCCCTAGTTTGGTTATGAA 59.286 37.037 0.00 0.00 0.00 2.57
2275 2396 8.837389 GTGATATTCCCTAGTTTGGTTATGAAC 58.163 37.037 0.00 0.00 0.00 3.18
2276 2397 7.713507 TGATATTCCCTAGTTTGGTTATGAACG 59.286 37.037 0.00 0.00 0.00 3.95
2277 2398 5.486735 TTCCCTAGTTTGGTTATGAACGA 57.513 39.130 0.00 0.00 0.00 3.85
2278 2399 5.687166 TCCCTAGTTTGGTTATGAACGAT 57.313 39.130 0.00 0.00 0.00 3.73
2279 2400 6.795144 TCCCTAGTTTGGTTATGAACGATA 57.205 37.500 0.00 0.00 0.00 2.92
2280 2401 7.185318 TCCCTAGTTTGGTTATGAACGATAA 57.815 36.000 0.00 0.00 0.00 1.75
2281 2402 7.798071 TCCCTAGTTTGGTTATGAACGATAAT 58.202 34.615 0.00 0.00 0.00 1.28
2282 2403 7.713507 TCCCTAGTTTGGTTATGAACGATAATG 59.286 37.037 0.00 0.00 0.00 1.90
2283 2404 7.497909 CCCTAGTTTGGTTATGAACGATAATGT 59.502 37.037 0.00 0.00 0.00 2.71
2284 2405 9.537192 CCTAGTTTGGTTATGAACGATAATGTA 57.463 33.333 0.00 0.00 0.00 2.29
2287 2408 8.879759 AGTTTGGTTATGAACGATAATGTAGTG 58.120 33.333 0.00 0.00 0.00 2.74
2288 2409 8.875803 GTTTGGTTATGAACGATAATGTAGTGA 58.124 33.333 0.00 0.00 0.00 3.41
2289 2410 9.607988 TTTGGTTATGAACGATAATGTAGTGAT 57.392 29.630 0.00 0.00 0.00 3.06
2290 2411 8.812147 TGGTTATGAACGATAATGTAGTGATC 57.188 34.615 0.00 0.00 0.00 2.92
2291 2412 8.638873 TGGTTATGAACGATAATGTAGTGATCT 58.361 33.333 0.00 0.00 0.00 2.75
2356 2477 2.221799 GCTATGCGTTCGTTCGTTTT 57.778 45.000 0.00 0.00 0.00 2.43
2370 2491 1.837538 CGTTTTGGGATGCACGACGT 61.838 55.000 0.00 0.00 34.49 4.34
2388 2509 1.535437 CGTAAGACGTATGCCTGGACC 60.535 57.143 0.00 0.00 43.02 4.46
2488 2612 2.279937 GATGACGGCGCTTTCGACAC 62.280 60.000 6.90 1.23 46.08 3.67
2512 2636 2.508300 ACCAATATGTACCACTGTCCCC 59.492 50.000 0.00 0.00 0.00 4.81
2539 2663 2.470257 CGTACGAAGTGGTGTTCTGTTC 59.530 50.000 10.44 0.00 45.73 3.18
2548 2672 2.093394 TGGTGTTCTGTTCGTGAAAGGA 60.093 45.455 0.00 0.00 0.00 3.36
2557 2681 2.536761 TCGTGAAAGGATTTGGTCGT 57.463 45.000 0.00 0.00 39.27 4.34
2580 2704 2.971330 CCACCAGATCTATTCAGCTCCT 59.029 50.000 0.00 0.00 0.00 3.69
2618 2742 0.178068 TAGCTGCTTGAATCCGACCC 59.822 55.000 7.79 0.00 0.00 4.46
2624 2748 0.796312 CTTGAATCCGACCCGTTGTG 59.204 55.000 0.00 0.00 0.00 3.33
2656 2780 3.740321 GCAGATTCGATTCTCTGGATCAC 59.260 47.826 17.02 2.48 39.42 3.06
2731 2860 3.009723 TCGAATTCTTCACCAGCCATTC 58.990 45.455 3.52 0.00 0.00 2.67
2764 2893 0.756294 TCTTCCGTGAACTGAAGCCA 59.244 50.000 9.11 0.00 37.20 4.75
2874 3443 0.176449 CACAGATGTCCGCTCCATGA 59.824 55.000 0.00 0.00 0.00 3.07
2916 3485 1.547820 TGCTCCCAGCGATATGATCTC 59.452 52.381 0.00 0.00 46.26 2.75
2938 3507 3.068732 CGAGATCCCAAGAACTGATGCTA 59.931 47.826 0.00 0.00 0.00 3.49
2948 3517 3.580458 AGAACTGATGCTACTGGTTCTGT 59.420 43.478 0.00 0.00 42.98 3.41
2962 3531 2.186350 TTCTGTTCATTGCTGGCGCG 62.186 55.000 0.00 0.00 39.65 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.191539 GCCAGCTCTAGCACGTGC 61.192 66.667 32.79 32.79 45.16 5.34
2 3 1.518133 GAGCCAGCTCTAGCACGTG 60.518 63.158 12.28 12.28 45.16 4.49
3 4 2.888863 GAGCCAGCTCTAGCACGT 59.111 61.111 12.42 0.00 45.16 4.49
11 12 0.244994 TCTTCGTGAAGAGCCAGCTC 59.755 55.000 11.78 11.78 42.06 4.09
12 13 2.355946 TCTTCGTGAAGAGCCAGCT 58.644 52.632 8.19 0.00 42.06 4.24
13 14 4.996976 TCTTCGTGAAGAGCCAGC 57.003 55.556 8.19 0.00 42.06 4.85
19 20 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
20 21 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
21 22 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
22 23 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
23 24 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
24 25 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
25 26 0.806492 GAAGGTAAGCGGGCTCTTCG 60.806 60.000 0.00 0.00 0.00 3.79
26 27 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
27 28 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
28 29 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
29 30 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
30 31 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
31 32 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.000 0.00 0.00 0.00 6.13
32 33 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
33 34 1.770294 AGGAGAGAGAAGGTAAGCGG 58.230 55.000 0.00 0.00 0.00 5.52
34 35 3.878160 AAAGGAGAGAGAAGGTAAGCG 57.122 47.619 0.00 0.00 0.00 4.68
35 36 5.186992 AGAGAAAAGGAGAGAGAAGGTAAGC 59.813 44.000 0.00 0.00 0.00 3.09
36 37 6.850752 AGAGAAAAGGAGAGAGAAGGTAAG 57.149 41.667 0.00 0.00 0.00 2.34
37 38 7.256368 GGAAAGAGAAAAGGAGAGAGAAGGTAA 60.256 40.741 0.00 0.00 0.00 2.85
38 39 6.211785 GGAAAGAGAAAAGGAGAGAGAAGGTA 59.788 42.308 0.00 0.00 0.00 3.08
39 40 5.012664 GGAAAGAGAAAAGGAGAGAGAAGGT 59.987 44.000 0.00 0.00 0.00 3.50
40 41 5.248248 AGGAAAGAGAAAAGGAGAGAGAAGG 59.752 44.000 0.00 0.00 0.00 3.46
41 42 6.358974 AGGAAAGAGAAAAGGAGAGAGAAG 57.641 41.667 0.00 0.00 0.00 2.85
42 43 5.247337 GGAGGAAAGAGAAAAGGAGAGAGAA 59.753 44.000 0.00 0.00 0.00 2.87
43 44 4.775253 GGAGGAAAGAGAAAAGGAGAGAGA 59.225 45.833 0.00 0.00 0.00 3.10
44 45 4.530161 TGGAGGAAAGAGAAAAGGAGAGAG 59.470 45.833 0.00 0.00 0.00 3.20
45 46 4.493618 TGGAGGAAAGAGAAAAGGAGAGA 58.506 43.478 0.00 0.00 0.00 3.10
46 47 4.899352 TGGAGGAAAGAGAAAAGGAGAG 57.101 45.455 0.00 0.00 0.00 3.20
47 48 4.660771 AGTTGGAGGAAAGAGAAAAGGAGA 59.339 41.667 0.00 0.00 0.00 3.71
48 49 4.979335 AGTTGGAGGAAAGAGAAAAGGAG 58.021 43.478 0.00 0.00 0.00 3.69
49 50 6.509523 TTAGTTGGAGGAAAGAGAAAAGGA 57.490 37.500 0.00 0.00 0.00 3.36
50 51 5.182190 GCTTAGTTGGAGGAAAGAGAAAAGG 59.818 44.000 0.00 0.00 0.00 3.11
51 52 5.765182 TGCTTAGTTGGAGGAAAGAGAAAAG 59.235 40.000 0.00 0.00 0.00 2.27
52 53 5.690865 TGCTTAGTTGGAGGAAAGAGAAAA 58.309 37.500 0.00 0.00 0.00 2.29
53 54 5.071788 TCTGCTTAGTTGGAGGAAAGAGAAA 59.928 40.000 0.00 0.00 0.00 2.52
54 55 4.593206 TCTGCTTAGTTGGAGGAAAGAGAA 59.407 41.667 0.00 0.00 0.00 2.87
55 56 4.160329 TCTGCTTAGTTGGAGGAAAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
56 57 4.543590 TCTGCTTAGTTGGAGGAAAGAG 57.456 45.455 0.00 0.00 0.00 2.85
57 58 4.974645 TTCTGCTTAGTTGGAGGAAAGA 57.025 40.909 0.00 0.00 0.00 2.52
58 59 7.872113 ATATTTCTGCTTAGTTGGAGGAAAG 57.128 36.000 0.00 0.00 0.00 2.62
59 60 8.548877 AGTATATTTCTGCTTAGTTGGAGGAAA 58.451 33.333 0.00 0.00 0.00 3.13
60 61 8.090788 AGTATATTTCTGCTTAGTTGGAGGAA 57.909 34.615 0.00 0.00 0.00 3.36
61 62 7.676683 AGTATATTTCTGCTTAGTTGGAGGA 57.323 36.000 0.00 0.00 0.00 3.71
62 63 8.643324 ACTAGTATATTTCTGCTTAGTTGGAGG 58.357 37.037 0.00 0.00 0.00 4.30
106 107 4.803088 GCAAGTACAATAGAGCTGAGTCAG 59.197 45.833 16.21 16.21 34.12 3.51
107 108 4.464244 AGCAAGTACAATAGAGCTGAGTCA 59.536 41.667 0.00 0.00 0.00 3.41
108 109 5.004922 AGCAAGTACAATAGAGCTGAGTC 57.995 43.478 0.00 0.00 0.00 3.36
109 110 4.709397 AGAGCAAGTACAATAGAGCTGAGT 59.291 41.667 0.00 0.00 31.61 3.41
110 111 5.261209 AGAGCAAGTACAATAGAGCTGAG 57.739 43.478 0.00 0.00 31.61 3.35
111 112 6.183360 CCTTAGAGCAAGTACAATAGAGCTGA 60.183 42.308 0.00 0.00 31.77 4.26
112 113 5.982516 CCTTAGAGCAAGTACAATAGAGCTG 59.017 44.000 0.00 0.00 31.77 4.24
113 114 5.894393 TCCTTAGAGCAAGTACAATAGAGCT 59.106 40.000 0.00 0.00 31.77 4.09
114 115 6.150396 TCCTTAGAGCAAGTACAATAGAGC 57.850 41.667 0.00 0.00 31.77 4.09
115 116 9.039870 CATTTCCTTAGAGCAAGTACAATAGAG 57.960 37.037 0.00 0.00 31.77 2.43
116 117 7.987458 CCATTTCCTTAGAGCAAGTACAATAGA 59.013 37.037 0.00 0.00 31.77 1.98
117 118 7.987458 TCCATTTCCTTAGAGCAAGTACAATAG 59.013 37.037 0.00 0.00 31.77 1.73
118 119 7.857456 TCCATTTCCTTAGAGCAAGTACAATA 58.143 34.615 0.00 0.00 31.77 1.90
119 120 6.721318 TCCATTTCCTTAGAGCAAGTACAAT 58.279 36.000 0.00 0.00 31.77 2.71
120 121 6.121776 TCCATTTCCTTAGAGCAAGTACAA 57.878 37.500 0.00 0.00 31.77 2.41
121 122 5.338381 CCTCCATTTCCTTAGAGCAAGTACA 60.338 44.000 0.00 0.00 31.77 2.90
122 123 5.119694 CCTCCATTTCCTTAGAGCAAGTAC 58.880 45.833 0.00 0.00 31.77 2.73
123 124 4.384208 GCCTCCATTTCCTTAGAGCAAGTA 60.384 45.833 0.00 0.00 31.77 2.24
124 125 3.623453 GCCTCCATTTCCTTAGAGCAAGT 60.623 47.826 0.00 0.00 31.77 3.16
125 126 2.948315 GCCTCCATTTCCTTAGAGCAAG 59.052 50.000 0.00 0.00 0.00 4.01
126 127 2.308570 TGCCTCCATTTCCTTAGAGCAA 59.691 45.455 0.00 0.00 0.00 3.91
127 128 1.915489 TGCCTCCATTTCCTTAGAGCA 59.085 47.619 0.00 0.00 0.00 4.26
128 129 2.092699 ACTGCCTCCATTTCCTTAGAGC 60.093 50.000 0.00 0.00 0.00 4.09
129 130 3.922171 ACTGCCTCCATTTCCTTAGAG 57.078 47.619 0.00 0.00 0.00 2.43
130 131 3.132289 CGTACTGCCTCCATTTCCTTAGA 59.868 47.826 0.00 0.00 0.00 2.10
131 132 3.132289 TCGTACTGCCTCCATTTCCTTAG 59.868 47.826 0.00 0.00 0.00 2.18
132 133 3.101437 TCGTACTGCCTCCATTTCCTTA 58.899 45.455 0.00 0.00 0.00 2.69
133 134 1.906574 TCGTACTGCCTCCATTTCCTT 59.093 47.619 0.00 0.00 0.00 3.36
134 135 1.207329 GTCGTACTGCCTCCATTTCCT 59.793 52.381 0.00 0.00 0.00 3.36
135 136 1.653151 GTCGTACTGCCTCCATTTCC 58.347 55.000 0.00 0.00 0.00 3.13
136 137 1.135199 TCGTCGTACTGCCTCCATTTC 60.135 52.381 0.00 0.00 0.00 2.17
137 138 0.892755 TCGTCGTACTGCCTCCATTT 59.107 50.000 0.00 0.00 0.00 2.32
138 139 0.456221 CTCGTCGTACTGCCTCCATT 59.544 55.000 0.00 0.00 0.00 3.16
139 140 0.680280 ACTCGTCGTACTGCCTCCAT 60.680 55.000 0.00 0.00 0.00 3.41
140 141 1.303074 ACTCGTCGTACTGCCTCCA 60.303 57.895 0.00 0.00 0.00 3.86
141 142 1.428620 GACTCGTCGTACTGCCTCC 59.571 63.158 0.00 0.00 0.00 4.30
142 143 1.428620 GGACTCGTCGTACTGCCTC 59.571 63.158 0.00 0.00 0.00 4.70
143 144 2.396955 CGGACTCGTCGTACTGCCT 61.397 63.158 0.00 0.00 0.00 4.75
144 145 2.099831 CGGACTCGTCGTACTGCC 59.900 66.667 0.00 0.00 0.00 4.85
145 146 1.699656 TAGCGGACTCGTCGTACTGC 61.700 60.000 10.17 10.17 38.89 4.40
146 147 0.723414 TTAGCGGACTCGTCGTACTG 59.277 55.000 0.00 0.00 38.89 2.74
147 148 1.005340 CTTAGCGGACTCGTCGTACT 58.995 55.000 0.00 0.00 38.89 2.73
148 149 1.002366 TCTTAGCGGACTCGTCGTAC 58.998 55.000 0.00 0.00 38.89 3.67
193 194 3.948425 GGATCTAGTCCACTGGGGA 57.052 57.895 0.00 0.00 46.96 4.81
202 203 2.558800 GGGATGAGGGAGGGATCTAGTC 60.559 59.091 0.00 0.00 0.00 2.59
203 204 1.435168 GGGATGAGGGAGGGATCTAGT 59.565 57.143 0.00 0.00 0.00 2.57
286 288 1.202348 GCACAACAGGTATGCCCTTTC 59.798 52.381 0.00 0.00 42.73 2.62
298 300 1.204062 CTAACGCCACGCACAACAG 59.796 57.895 0.00 0.00 0.00 3.16
318 320 2.861974 GGAACCCCAACCCCTCCA 60.862 66.667 0.00 0.00 0.00 3.86
422 428 3.183373 GGCTGCTCTTTCTTAATCGATCG 59.817 47.826 9.36 9.36 0.00 3.69
433 439 1.304509 GGCTGACTGGCTGCTCTTTC 61.305 60.000 12.30 0.00 40.85 2.62
576 582 1.706995 TTGGGTTGGGGTTAGCACGA 61.707 55.000 0.00 0.00 0.00 4.35
578 584 0.966179 CTTTGGGTTGGGGTTAGCAC 59.034 55.000 0.00 0.00 0.00 4.40
579 585 0.830023 GCTTTGGGTTGGGGTTAGCA 60.830 55.000 0.00 0.00 0.00 3.49
580 586 0.830023 TGCTTTGGGTTGGGGTTAGC 60.830 55.000 0.00 0.00 0.00 3.09
586 592 3.313524 GGCCTGCTTTGGGTTGGG 61.314 66.667 0.00 0.00 0.00 4.12
630 636 9.253832 TGCAAGGAAAAGAATAGGAATAAATGA 57.746 29.630 0.00 0.00 0.00 2.57
631 637 9.305925 GTGCAAGGAAAAGAATAGGAATAAATG 57.694 33.333 0.00 0.00 0.00 2.32
632 638 9.034800 TGTGCAAGGAAAAGAATAGGAATAAAT 57.965 29.630 0.00 0.00 0.00 1.40
633 639 8.415950 TGTGCAAGGAAAAGAATAGGAATAAA 57.584 30.769 0.00 0.00 0.00 1.40
634 640 7.362920 GCTGTGCAAGGAAAAGAATAGGAATAA 60.363 37.037 0.00 0.00 0.00 1.40
635 641 6.095440 GCTGTGCAAGGAAAAGAATAGGAATA 59.905 38.462 0.00 0.00 0.00 1.75
658 668 1.188219 ATGAGTCACCGTCCAGTGCT 61.188 55.000 0.00 0.00 37.68 4.40
659 669 1.016130 CATGAGTCACCGTCCAGTGC 61.016 60.000 0.00 0.00 37.68 4.40
660 670 0.603065 TCATGAGTCACCGTCCAGTG 59.397 55.000 0.00 0.00 39.20 3.66
661 671 0.603569 GTCATGAGTCACCGTCCAGT 59.396 55.000 0.00 0.00 0.00 4.00
662 672 0.603065 TGTCATGAGTCACCGTCCAG 59.397 55.000 0.00 0.00 0.00 3.86
669 679 2.440539 AGGTTCGTGTCATGAGTCAC 57.559 50.000 0.00 0.39 0.00 3.67
709 738 3.496160 CGTGTGGATTTTATAGGGAGGGG 60.496 52.174 0.00 0.00 0.00 4.79
794 839 1.028330 TCTAACCTGGATCGACGCGT 61.028 55.000 13.85 13.85 0.00 6.01
895 946 4.431416 AGGAGAAACACACCACATAACA 57.569 40.909 0.00 0.00 0.00 2.41
896 947 4.387862 CGTAGGAGAAACACACCACATAAC 59.612 45.833 0.00 0.00 0.00 1.89
897 948 4.039488 ACGTAGGAGAAACACACCACATAA 59.961 41.667 0.00 0.00 0.00 1.90
1395 1451 1.272490 ACTCGCAGAATGAAACGGAGA 59.728 47.619 0.00 0.00 39.69 3.71
1397 1453 1.428448 CACTCGCAGAATGAAACGGA 58.572 50.000 0.00 0.00 39.69 4.69
1412 1473 0.778815 CACGTTCTCTCGTTGCACTC 59.221 55.000 0.00 0.00 42.27 3.51
1436 1497 2.639286 CGCTGCCGCTTGAAAGTT 59.361 55.556 0.00 0.00 0.00 2.66
1448 1509 2.546494 ATTATTCGCTGGCCGCTGC 61.546 57.895 15.78 10.82 36.73 5.25
1453 1524 0.038892 CCATGCATTATTCGCTGGCC 60.039 55.000 0.00 0.00 0.00 5.36
1598 1679 2.517402 CTCGTCCCTCCCGGAGAG 60.517 72.222 16.69 8.11 43.19 3.20
1648 1729 0.323908 CTGAGAACCCCTCCGACTCT 60.324 60.000 0.00 0.00 41.25 3.24
1761 1870 4.096681 TCAACCTTGCCTCTCTCTGAATA 58.903 43.478 0.00 0.00 0.00 1.75
1762 1871 2.909006 TCAACCTTGCCTCTCTCTGAAT 59.091 45.455 0.00 0.00 0.00 2.57
1804 1922 3.552890 GGGAGTTCTGCAAACACATTTCC 60.553 47.826 12.28 9.79 0.00 3.13
1892 2010 1.227556 GTTGCCGCGGATCCTGTAT 60.228 57.895 33.48 0.00 0.00 2.29
1911 2029 2.818132 GCTCCACTGATCCCCGAG 59.182 66.667 0.00 0.00 0.00 4.63
2094 2215 3.181510 GGAGTACTATGCTTGTTTTGCCG 60.182 47.826 0.00 0.00 0.00 5.69
2113 2234 9.640963 CATTCTTATATTAGTTTACGGAGGGAG 57.359 37.037 0.00 0.00 0.00 4.30
2114 2235 9.151177 ACATTCTTATATTAGTTTACGGAGGGA 57.849 33.333 0.00 0.00 0.00 4.20
2115 2236 9.774413 AACATTCTTATATTAGTTTACGGAGGG 57.226 33.333 0.00 0.00 0.00 4.30
2164 2285 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2165 2286 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2166 2287 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2167 2288 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2168 2289 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2174 2295 8.848182 CGTTCTACTCCCTCTGTAAACTAATAT 58.152 37.037 0.00 0.00 0.00 1.28
2175 2296 7.831193 ACGTTCTACTCCCTCTGTAAACTAATA 59.169 37.037 0.00 0.00 0.00 0.98
2176 2297 6.662663 ACGTTCTACTCCCTCTGTAAACTAAT 59.337 38.462 0.00 0.00 0.00 1.73
2177 2298 6.006449 ACGTTCTACTCCCTCTGTAAACTAA 58.994 40.000 0.00 0.00 0.00 2.24
2178 2299 5.564550 ACGTTCTACTCCCTCTGTAAACTA 58.435 41.667 0.00 0.00 0.00 2.24
2179 2300 4.405548 ACGTTCTACTCCCTCTGTAAACT 58.594 43.478 0.00 0.00 0.00 2.66
2180 2301 4.780275 ACGTTCTACTCCCTCTGTAAAC 57.220 45.455 0.00 0.00 0.00 2.01
2181 2302 6.899393 TTTACGTTCTACTCCCTCTGTAAA 57.101 37.500 0.00 0.00 0.00 2.01
2182 2303 6.660521 TGATTTACGTTCTACTCCCTCTGTAA 59.339 38.462 0.00 0.00 0.00 2.41
2183 2304 6.182627 TGATTTACGTTCTACTCCCTCTGTA 58.817 40.000 0.00 0.00 0.00 2.74
2184 2305 5.014858 TGATTTACGTTCTACTCCCTCTGT 58.985 41.667 0.00 0.00 0.00 3.41
2185 2306 5.578005 TGATTTACGTTCTACTCCCTCTG 57.422 43.478 0.00 0.00 0.00 3.35
2186 2307 6.014840 TGTTTGATTTACGTTCTACTCCCTCT 60.015 38.462 0.00 0.00 0.00 3.69
2187 2308 6.090493 GTGTTTGATTTACGTTCTACTCCCTC 59.910 42.308 0.00 0.00 0.00 4.30
2188 2309 5.930569 GTGTTTGATTTACGTTCTACTCCCT 59.069 40.000 0.00 0.00 0.00 4.20
2189 2310 5.930569 AGTGTTTGATTTACGTTCTACTCCC 59.069 40.000 0.00 0.00 0.00 4.30
2190 2311 6.183359 CGAGTGTTTGATTTACGTTCTACTCC 60.183 42.308 0.00 0.00 0.00 3.85
2191 2312 6.580041 TCGAGTGTTTGATTTACGTTCTACTC 59.420 38.462 0.00 0.00 0.00 2.59
2192 2313 6.441274 TCGAGTGTTTGATTTACGTTCTACT 58.559 36.000 0.00 0.00 0.00 2.57
2193 2314 6.680055 TCGAGTGTTTGATTTACGTTCTAC 57.320 37.500 0.00 0.00 0.00 2.59
2194 2315 7.878477 ATTCGAGTGTTTGATTTACGTTCTA 57.122 32.000 0.00 0.00 0.00 2.10
2195 2316 6.780706 ATTCGAGTGTTTGATTTACGTTCT 57.219 33.333 0.00 0.00 0.00 3.01
2196 2317 7.067116 TCAATTCGAGTGTTTGATTTACGTTC 58.933 34.615 0.00 0.00 0.00 3.95
2197 2318 6.950545 TCAATTCGAGTGTTTGATTTACGTT 58.049 32.000 0.00 0.00 0.00 3.99
2198 2319 6.533819 TCAATTCGAGTGTTTGATTTACGT 57.466 33.333 0.00 0.00 0.00 3.57
2199 2320 7.266335 GTCTTCAATTCGAGTGTTTGATTTACG 59.734 37.037 3.92 0.00 0.00 3.18
2200 2321 8.067784 TGTCTTCAATTCGAGTGTTTGATTTAC 58.932 33.333 3.92 4.19 0.00 2.01
2201 2322 8.067784 GTGTCTTCAATTCGAGTGTTTGATTTA 58.932 33.333 3.92 0.00 0.00 1.40
2202 2323 6.912591 GTGTCTTCAATTCGAGTGTTTGATTT 59.087 34.615 3.92 0.00 0.00 2.17
2203 2324 6.038161 TGTGTCTTCAATTCGAGTGTTTGATT 59.962 34.615 3.92 0.00 0.00 2.57
2204 2325 5.527214 TGTGTCTTCAATTCGAGTGTTTGAT 59.473 36.000 3.92 0.00 0.00 2.57
2205 2326 4.873259 TGTGTCTTCAATTCGAGTGTTTGA 59.127 37.500 0.00 0.00 0.00 2.69
2206 2327 5.155509 TGTGTCTTCAATTCGAGTGTTTG 57.844 39.130 0.00 0.00 0.00 2.93
2207 2328 6.377327 AATGTGTCTTCAATTCGAGTGTTT 57.623 33.333 0.00 0.00 0.00 2.83
2208 2329 6.377327 AAATGTGTCTTCAATTCGAGTGTT 57.623 33.333 0.00 0.00 0.00 3.32
2209 2330 6.377327 AAAATGTGTCTTCAATTCGAGTGT 57.623 33.333 0.00 0.00 0.00 3.55
2210 2331 5.853282 GGAAAATGTGTCTTCAATTCGAGTG 59.147 40.000 0.00 0.00 0.00 3.51
2211 2332 5.765182 AGGAAAATGTGTCTTCAATTCGAGT 59.235 36.000 0.00 0.00 0.00 4.18
2212 2333 6.082338 CAGGAAAATGTGTCTTCAATTCGAG 58.918 40.000 0.00 0.00 0.00 4.04
2213 2334 5.562696 GCAGGAAAATGTGTCTTCAATTCGA 60.563 40.000 0.00 0.00 0.00 3.71
2214 2335 4.618489 GCAGGAAAATGTGTCTTCAATTCG 59.382 41.667 0.00 0.00 0.00 3.34
2215 2336 4.925646 GGCAGGAAAATGTGTCTTCAATTC 59.074 41.667 0.00 0.00 0.00 2.17
2216 2337 4.344679 TGGCAGGAAAATGTGTCTTCAATT 59.655 37.500 0.00 0.00 0.00 2.32
2217 2338 3.896888 TGGCAGGAAAATGTGTCTTCAAT 59.103 39.130 0.00 0.00 0.00 2.57
2218 2339 3.295093 TGGCAGGAAAATGTGTCTTCAA 58.705 40.909 0.00 0.00 0.00 2.69
2219 2340 2.942804 TGGCAGGAAAATGTGTCTTCA 58.057 42.857 0.00 0.00 0.00 3.02
2220 2341 4.525912 AATGGCAGGAAAATGTGTCTTC 57.474 40.909 0.00 0.00 0.00 2.87
2221 2342 6.610075 ATTAATGGCAGGAAAATGTGTCTT 57.390 33.333 0.00 0.00 0.00 3.01
2222 2343 6.610075 AATTAATGGCAGGAAAATGTGTCT 57.390 33.333 0.00 0.00 0.00 3.41
2223 2344 7.411804 CGAAAATTAATGGCAGGAAAATGTGTC 60.412 37.037 0.00 0.00 0.00 3.67
2224 2345 6.368516 CGAAAATTAATGGCAGGAAAATGTGT 59.631 34.615 0.00 0.00 0.00 3.72
2225 2346 6.368516 ACGAAAATTAATGGCAGGAAAATGTG 59.631 34.615 0.00 0.00 0.00 3.21
2226 2347 6.368516 CACGAAAATTAATGGCAGGAAAATGT 59.631 34.615 0.00 0.00 0.00 2.71
2227 2348 6.589523 TCACGAAAATTAATGGCAGGAAAATG 59.410 34.615 0.00 0.00 0.00 2.32
2228 2349 6.696411 TCACGAAAATTAATGGCAGGAAAAT 58.304 32.000 0.00 0.00 0.00 1.82
2229 2350 6.090483 TCACGAAAATTAATGGCAGGAAAA 57.910 33.333 0.00 0.00 0.00 2.29
2230 2351 5.713792 TCACGAAAATTAATGGCAGGAAA 57.286 34.783 0.00 0.00 0.00 3.13
2231 2352 5.913137 ATCACGAAAATTAATGGCAGGAA 57.087 34.783 0.00 0.00 0.00 3.36
2232 2353 7.255451 GGAATATCACGAAAATTAATGGCAGGA 60.255 37.037 0.00 0.00 0.00 3.86
2233 2354 6.863126 GGAATATCACGAAAATTAATGGCAGG 59.137 38.462 0.00 0.00 0.00 4.85
2234 2355 6.863126 GGGAATATCACGAAAATTAATGGCAG 59.137 38.462 0.00 0.00 0.00 4.85
2235 2356 6.549364 AGGGAATATCACGAAAATTAATGGCA 59.451 34.615 0.00 0.00 0.00 4.92
2236 2357 6.981722 AGGGAATATCACGAAAATTAATGGC 58.018 36.000 0.00 0.00 0.00 4.40
2237 2358 9.284968 ACTAGGGAATATCACGAAAATTAATGG 57.715 33.333 0.00 0.00 0.00 3.16
2241 2362 9.116067 CCAAACTAGGGAATATCACGAAAATTA 57.884 33.333 0.00 0.00 0.00 1.40
2242 2363 7.614192 ACCAAACTAGGGAATATCACGAAAATT 59.386 33.333 0.00 0.00 0.00 1.82
2243 2364 7.116736 ACCAAACTAGGGAATATCACGAAAAT 58.883 34.615 0.00 0.00 0.00 1.82
2244 2365 6.478129 ACCAAACTAGGGAATATCACGAAAA 58.522 36.000 0.00 0.00 0.00 2.29
2245 2366 6.057321 ACCAAACTAGGGAATATCACGAAA 57.943 37.500 0.00 0.00 0.00 3.46
2246 2367 5.687166 ACCAAACTAGGGAATATCACGAA 57.313 39.130 0.00 0.00 0.00 3.85
2247 2368 5.687166 AACCAAACTAGGGAATATCACGA 57.313 39.130 0.00 0.00 0.00 4.35
2248 2369 7.214381 TCATAACCAAACTAGGGAATATCACG 58.786 38.462 0.00 0.00 0.00 4.35
2249 2370 8.837389 GTTCATAACCAAACTAGGGAATATCAC 58.163 37.037 0.00 0.00 0.00 3.06
2250 2371 7.713507 CGTTCATAACCAAACTAGGGAATATCA 59.286 37.037 0.00 0.00 0.00 2.15
2251 2372 7.929785 TCGTTCATAACCAAACTAGGGAATATC 59.070 37.037 0.00 0.00 0.00 1.63
2252 2373 7.798071 TCGTTCATAACCAAACTAGGGAATAT 58.202 34.615 0.00 0.00 0.00 1.28
2253 2374 7.185318 TCGTTCATAACCAAACTAGGGAATA 57.815 36.000 0.00 0.00 0.00 1.75
2254 2375 6.057321 TCGTTCATAACCAAACTAGGGAAT 57.943 37.500 0.00 0.00 0.00 3.01
2255 2376 5.486735 TCGTTCATAACCAAACTAGGGAA 57.513 39.130 0.00 0.00 0.00 3.97
2256 2377 5.687166 ATCGTTCATAACCAAACTAGGGA 57.313 39.130 0.00 0.00 0.00 4.20
2257 2378 7.497909 ACATTATCGTTCATAACCAAACTAGGG 59.502 37.037 0.00 0.00 29.24 3.53
2258 2379 8.433421 ACATTATCGTTCATAACCAAACTAGG 57.567 34.615 0.00 0.00 29.24 3.02
2261 2382 8.879759 CACTACATTATCGTTCATAACCAAACT 58.120 33.333 0.00 0.00 29.24 2.66
2262 2383 8.875803 TCACTACATTATCGTTCATAACCAAAC 58.124 33.333 0.00 0.00 29.24 2.93
2263 2384 9.607988 ATCACTACATTATCGTTCATAACCAAA 57.392 29.630 0.00 0.00 29.24 3.28
2264 2385 9.256477 GATCACTACATTATCGTTCATAACCAA 57.744 33.333 0.00 0.00 29.24 3.67
2265 2386 8.638873 AGATCACTACATTATCGTTCATAACCA 58.361 33.333 0.00 0.00 29.24 3.67
2266 2387 8.916654 CAGATCACTACATTATCGTTCATAACC 58.083 37.037 0.00 0.00 29.24 2.85
2267 2388 8.916654 CCAGATCACTACATTATCGTTCATAAC 58.083 37.037 0.00 0.00 29.24 1.89
2268 2389 7.598869 GCCAGATCACTACATTATCGTTCATAA 59.401 37.037 0.00 0.00 0.00 1.90
2269 2390 7.090808 GCCAGATCACTACATTATCGTTCATA 58.909 38.462 0.00 0.00 0.00 2.15
2270 2391 5.928839 GCCAGATCACTACATTATCGTTCAT 59.071 40.000 0.00 0.00 0.00 2.57
2271 2392 5.289595 GCCAGATCACTACATTATCGTTCA 58.710 41.667 0.00 0.00 0.00 3.18
2272 2393 4.383052 CGCCAGATCACTACATTATCGTTC 59.617 45.833 0.00 0.00 0.00 3.95
2273 2394 4.299155 CGCCAGATCACTACATTATCGTT 58.701 43.478 0.00 0.00 0.00 3.85
2274 2395 3.305403 CCGCCAGATCACTACATTATCGT 60.305 47.826 0.00 0.00 0.00 3.73
2275 2396 3.057526 TCCGCCAGATCACTACATTATCG 60.058 47.826 0.00 0.00 0.00 2.92
2276 2397 4.521130 TCCGCCAGATCACTACATTATC 57.479 45.455 0.00 0.00 0.00 1.75
2277 2398 4.955811 TTCCGCCAGATCACTACATTAT 57.044 40.909 0.00 0.00 0.00 1.28
2278 2399 4.746535 TTTCCGCCAGATCACTACATTA 57.253 40.909 0.00 0.00 0.00 1.90
2279 2400 3.627395 TTTCCGCCAGATCACTACATT 57.373 42.857 0.00 0.00 0.00 2.71
2280 2401 3.845781 ATTTCCGCCAGATCACTACAT 57.154 42.857 0.00 0.00 0.00 2.29
2281 2402 3.627395 AATTTCCGCCAGATCACTACA 57.373 42.857 0.00 0.00 0.00 2.74
2282 2403 3.689649 ACAAATTTCCGCCAGATCACTAC 59.310 43.478 0.00 0.00 0.00 2.73
2283 2404 3.950397 ACAAATTTCCGCCAGATCACTA 58.050 40.909 0.00 0.00 0.00 2.74
2284 2405 2.795329 ACAAATTTCCGCCAGATCACT 58.205 42.857 0.00 0.00 0.00 3.41
2285 2406 3.244976 CAACAAATTTCCGCCAGATCAC 58.755 45.455 0.00 0.00 0.00 3.06
2286 2407 2.230992 CCAACAAATTTCCGCCAGATCA 59.769 45.455 0.00 0.00 0.00 2.92
2287 2408 2.879826 CCAACAAATTTCCGCCAGATC 58.120 47.619 0.00 0.00 0.00 2.75
2288 2409 1.066929 GCCAACAAATTTCCGCCAGAT 60.067 47.619 0.00 0.00 0.00 2.90
2289 2410 0.316841 GCCAACAAATTTCCGCCAGA 59.683 50.000 0.00 0.00 0.00 3.86
2290 2411 1.008361 CGCCAACAAATTTCCGCCAG 61.008 55.000 0.00 0.00 0.00 4.85
2291 2412 1.006805 CGCCAACAAATTTCCGCCA 60.007 52.632 0.00 0.00 0.00 5.69
2356 2477 0.108992 GTCTTACGTCGTGCATCCCA 60.109 55.000 8.47 0.00 0.00 4.37
2370 2491 1.754803 CTGGTCCAGGCATACGTCTTA 59.245 52.381 11.46 0.00 0.00 2.10
2388 2509 1.075542 TTAAATGCGCTCACGTCCTG 58.924 50.000 9.73 0.00 42.83 3.86
2476 2598 1.550659 TTGGTACGTGTCGAAAGCGC 61.551 55.000 0.00 0.00 37.46 5.92
2477 2599 1.065358 ATTGGTACGTGTCGAAAGCG 58.935 50.000 0.00 0.00 39.35 4.68
2488 2612 4.365723 GGACAGTGGTACATATTGGTACG 58.634 47.826 0.00 0.00 44.52 3.67
2512 2636 2.872925 CCACTTCGTACGCCGTCG 60.873 66.667 11.24 0.00 42.43 5.12
2539 2663 1.399727 GCACGACCAAATCCTTTCACG 60.400 52.381 0.00 0.00 0.00 4.35
2557 2681 2.103771 GAGCTGAATAGATCTGGTGGCA 59.896 50.000 5.18 0.00 37.77 4.92
2580 2704 1.399714 ACTGTGAGTCAACGACCAGA 58.600 50.000 13.08 0.00 32.18 3.86
2624 2748 3.195698 GAATCTGCACCGGCGGTC 61.196 66.667 31.82 23.31 46.81 4.79
2731 2860 2.094494 ACGGAAGAGCTGACAGTACATG 60.094 50.000 3.99 0.00 0.00 3.21
2764 2893 1.744368 CTGCTTCGTCCTGCATGCT 60.744 57.895 20.33 0.00 38.59 3.79
2874 3443 0.394565 GAACCAGAGGATGCGGCTAT 59.605 55.000 0.00 0.00 0.00 2.97
2916 3485 2.158986 AGCATCAGTTCTTGGGATCTCG 60.159 50.000 0.00 0.00 0.00 4.04
2927 3496 3.931578 ACAGAACCAGTAGCATCAGTTC 58.068 45.455 0.00 0.00 37.65 3.01
2938 3507 2.233271 CCAGCAATGAACAGAACCAGT 58.767 47.619 0.00 0.00 0.00 4.00
2966 3535 2.662091 GAAAGGGCGTGTGTGTGTGC 62.662 60.000 0.00 0.00 0.00 4.57
2967 3536 1.095228 AGAAAGGGCGTGTGTGTGTG 61.095 55.000 0.00 0.00 0.00 3.82
2968 3537 0.814010 GAGAAAGGGCGTGTGTGTGT 60.814 55.000 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.