Multiple sequence alignment - TraesCS4D01G172100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G172100 chr4D 100.000 8004 0 0 1 8004 299321917 299313914 0.000000e+00 14781.0
1 TraesCS4D01G172100 chr4A 93.985 3325 115 38 310 3605 185429061 185432329 0.000000e+00 4953.0
2 TraesCS4D01G172100 chr4A 95.339 2446 64 20 3648 6056 185432567 185434999 0.000000e+00 3840.0
3 TraesCS4D01G172100 chr4A 92.949 1092 39 12 6285 7349 185435425 185436505 0.000000e+00 1555.0
4 TraesCS4D01G172100 chr4A 94.068 236 13 1 6066 6300 185435115 185435350 2.750000e-94 357.0
5 TraesCS4D01G172100 chr4A 86.111 288 37 3 7720 8004 185436895 185437182 2.810000e-79 307.0
6 TraesCS4D01G172100 chr4A 91.176 136 9 3 7346 7478 185436551 185436686 1.770000e-41 182.0
7 TraesCS4D01G172100 chr4A 92.000 100 8 0 7474 7573 158858622 158858523 3.010000e-29 141.0
8 TraesCS4D01G172100 chr4B 98.144 1778 28 4 2370 4145 371976037 371974263 0.000000e+00 3096.0
9 TraesCS4D01G172100 chr4B 90.960 2135 107 41 5439 7495 371970366 371968240 0.000000e+00 2795.0
10 TraesCS4D01G172100 chr4B 91.184 1622 53 25 367 1960 371978190 371976631 0.000000e+00 2121.0
11 TraesCS4D01G172100 chr4B 94.144 1349 65 11 4131 5471 371971708 371970366 0.000000e+00 2041.0
12 TraesCS4D01G172100 chr4B 98.387 186 3 0 1943 2128 371976270 371976085 2.150000e-85 327.0
13 TraesCS4D01G172100 chr4B 88.538 253 28 1 7753 8004 371967980 371967728 1.010000e-78 305.0
14 TraesCS4D01G172100 chr4B 95.652 46 1 1 7723 7768 371968041 371967997 1.110000e-08 73.1
15 TraesCS4D01G172100 chr5A 93.478 276 14 2 5129 5403 372645064 372645336 2.690000e-109 407.0
16 TraesCS4D01G172100 chr5A 92.364 275 17 2 5130 5403 680718750 680719021 9.740000e-104 388.0
17 TraesCS4D01G172100 chr5A 77.451 408 73 14 2750 3152 46006700 46006307 8.080000e-55 226.0
18 TraesCS4D01G172100 chr7A 93.116 276 13 4 5129 5403 403934324 403934054 4.500000e-107 399.0
19 TraesCS4D01G172100 chr7A 92.029 276 18 2 5129 5403 80986880 80986608 1.260000e-102 385.0
20 TraesCS4D01G172100 chr7A 80.335 239 28 11 4585 4820 94432434 94432212 6.430000e-36 163.0
21 TraesCS4D01G172100 chr6A 91.930 285 19 2 5120 5403 470142527 470142246 5.820000e-106 396.0
22 TraesCS4D01G172100 chr6A 92.391 276 17 2 5129 5403 31012569 31012841 2.710000e-104 390.0
23 TraesCS4D01G172100 chr6A 85.057 174 19 1 6630 6796 307897387 307897214 3.840000e-38 171.0
24 TraesCS4D01G172100 chr6A 84.571 175 18 4 6630 6796 19872190 19872363 1.790000e-36 165.0
25 TraesCS4D01G172100 chr3A 92.115 279 18 2 5126 5403 474958112 474958387 2.710000e-104 390.0
26 TraesCS4D01G172100 chr3A 87.671 146 18 0 6630 6775 9984142 9984287 3.840000e-38 171.0
27 TraesCS4D01G172100 chr5D 76.781 702 152 9 2500 3194 232141199 232140502 4.530000e-102 383.0
28 TraesCS4D01G172100 chr5D 94.355 124 7 0 15 138 30459072 30459195 2.950000e-44 191.0
29 TraesCS4D01G172100 chr5D 90.291 103 10 0 7472 7574 266749454 266749352 1.400000e-27 135.0
30 TraesCS4D01G172100 chr7D 95.000 120 6 0 15 134 600970970 600971089 1.060000e-43 189.0
31 TraesCS4D01G172100 chr7D 91.045 134 11 1 7 139 123785081 123784948 6.380000e-41 180.0
32 TraesCS4D01G172100 chr3D 91.912 136 9 2 1 134 7308041 7308176 1.060000e-43 189.0
33 TraesCS4D01G172100 chr6B 94.262 122 7 0 10 131 281236260 281236381 3.810000e-43 187.0
34 TraesCS4D01G172100 chr6B 91.111 135 9 3 4 137 631288169 631288301 6.380000e-41 180.0
35 TraesCS4D01G172100 chr6B 91.837 98 8 0 7474 7571 315650304 315650207 3.900000e-28 137.0
36 TraesCS4D01G172100 chr5B 94.915 118 6 0 15 132 702225586 702225469 1.370000e-42 185.0
37 TraesCS4D01G172100 chr5B 93.548 124 7 1 10 132 522656736 522656859 4.930000e-42 183.0
38 TraesCS4D01G172100 chr2A 79.239 289 41 10 1025 1303 58001629 58001908 4.930000e-42 183.0
39 TraesCS4D01G172100 chr2D 80.153 262 36 8 1052 1303 56578845 56579100 1.770000e-41 182.0
40 TraesCS4D01G172100 chr2D 85.600 125 18 0 7454 7578 153804372 153804248 1.810000e-26 132.0
41 TraesCS4D01G172100 chr2B 92.188 128 9 1 15 142 113275275 113275149 6.380000e-41 180.0
42 TraesCS4D01G172100 chr2B 79.845 258 38 6 1055 1303 89554440 89554692 8.260000e-40 176.0
43 TraesCS4D01G172100 chr6D 91.919 99 8 0 7473 7571 356602626 356602724 1.080000e-28 139.0
44 TraesCS4D01G172100 chr1D 91.919 99 8 0 7472 7570 494470823 494470921 1.080000e-28 139.0
45 TraesCS4D01G172100 chr1D 88.496 113 11 2 7466 7577 12070202 12070091 1.400000e-27 135.0
46 TraesCS4D01G172100 chr1D 77.778 234 38 10 4586 4813 126138227 126138452 1.810000e-26 132.0
47 TraesCS4D01G172100 chr1D 79.894 189 23 11 4634 4814 389215308 389215127 3.030000e-24 124.0
48 TraesCS4D01G172100 chr1D 100.000 29 0 0 2169 2197 37216841 37216813 4.000000e-03 54.7
49 TraesCS4D01G172100 chr3B 90.385 104 9 1 7473 7575 479298378 479298481 1.400000e-27 135.0
50 TraesCS4D01G172100 chr1A 88.496 113 12 1 7466 7577 238868657 238868769 1.400000e-27 135.0
51 TraesCS4D01G172100 chr1B 100.000 29 0 0 2169 2197 56999273 56999245 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G172100 chr4D 299313914 299321917 8003 True 14781.000000 14781 100.000000 1 8004 1 chr4D.!!$R1 8003
1 TraesCS4D01G172100 chr4A 185429061 185437182 8121 False 1865.666667 4953 92.271333 310 8004 6 chr4A.!!$F1 7694
2 TraesCS4D01G172100 chr4B 371967728 371978190 10462 True 1536.871429 3096 93.858429 367 8004 7 chr4B.!!$R1 7637
3 TraesCS4D01G172100 chr5D 232140502 232141199 697 True 383.000000 383 76.781000 2500 3194 1 chr5D.!!$R1 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30 F
127 128 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
296 297 0.033796 CTGACAACCAGGATGCCCAT 60.034 55.000 0.00 0.00 39.23 4.00 F
783 813 0.178831 AAGTCCAACCCCTCCTCCAT 60.179 55.000 0.00 0.00 0.00 3.41 F
878 909 0.544357 TCTTTTCTCGGCCTCTCCCA 60.544 55.000 0.00 0.00 0.00 4.37 F
1614 1669 0.617249 TGCATGGGGGATTGGTTTCC 60.617 55.000 0.00 0.00 34.83 3.13 F
3337 3778 0.538287 GCTCCTTGCAGGTTTGGACT 60.538 55.000 0.00 0.00 42.31 3.85 F
5079 8293 1.065126 CATCACTTTCCTGACTCCCCC 60.065 57.143 0.00 0.00 0.00 5.40 F
5105 8319 0.545309 TCCTCTGTCCTGACCCCAAG 60.545 60.000 0.00 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 1882 0.034380 TCTGGCTCTGCTACCGTAGT 60.034 55.000 7.4 0.0 0.00 2.73 R
2110 2547 3.602390 CGGAACATAATTAAGCACCGG 57.398 47.619 0.0 0.0 36.27 5.28 R
2129 2566 0.309612 CGAAACCAGGACCAAAACCG 59.690 55.000 0.0 0.0 0.00 4.44 R
2243 2680 2.215587 CACCGTGTACTATTTCATCGCG 59.784 50.000 0.0 0.0 0.00 5.87 R
2294 2731 4.487714 TCTTACATGTCAGATGGGGTTC 57.512 45.455 0.0 0.0 0.00 3.62 R
3608 4050 3.073503 GGGGTAACTAGTGGTGGAAAACT 59.926 47.826 0.0 0.0 0.00 2.66 R
5105 8319 1.376037 CGAAAGGGAGTGAGGTGGC 60.376 63.158 0.0 0.0 0.00 5.01 R
6891 10406 2.158957 TCCGAATCCATGTAACTCTGGC 60.159 50.000 0.0 0.0 32.30 4.85 R
7084 10604 2.095919 ACAAACCGTATCTTTGCTTCGC 60.096 45.455 0.0 0.0 32.71 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.125536 ACTTTTATTTTACTTCCTCCGTTCG 57.874 36.000 0.00 0.00 0.00 3.95
29 30 6.148315 ACTTTTATTTTACTTCCTCCGTTCGG 59.852 38.462 4.74 4.74 0.00 4.30
30 31 3.967332 ATTTTACTTCCTCCGTTCGGA 57.033 42.857 13.34 13.34 0.00 4.55
31 32 3.749665 TTTTACTTCCTCCGTTCGGAA 57.250 42.857 14.79 0.00 38.18 4.30
32 33 3.749665 TTTACTTCCTCCGTTCGGAAA 57.250 42.857 14.79 6.77 39.86 3.13
33 34 3.967332 TTACTTCCTCCGTTCGGAAAT 57.033 42.857 14.79 2.39 39.86 2.17
34 35 5.404466 TTTACTTCCTCCGTTCGGAAATA 57.596 39.130 14.79 1.22 39.86 1.40
35 36 3.242549 ACTTCCTCCGTTCGGAAATAC 57.757 47.619 14.79 0.00 39.86 1.89
36 37 2.830321 ACTTCCTCCGTTCGGAAATACT 59.170 45.455 14.79 0.00 39.86 2.12
37 38 3.260128 ACTTCCTCCGTTCGGAAATACTT 59.740 43.478 14.79 0.00 39.86 2.24
38 39 3.241067 TCCTCCGTTCGGAAATACTTG 57.759 47.619 14.79 1.97 33.41 3.16
39 40 2.564062 TCCTCCGTTCGGAAATACTTGT 59.436 45.455 14.79 0.00 33.41 3.16
40 41 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
41 42 2.597305 CTCCGTTCGGAAATACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
42 43 1.657094 CCGTTCGGAAATACTTGTCGG 59.343 52.381 5.19 0.00 0.00 4.79
43 44 2.598589 CGTTCGGAAATACTTGTCGGA 58.401 47.619 0.00 0.00 0.00 4.55
44 45 2.597305 CGTTCGGAAATACTTGTCGGAG 59.403 50.000 0.00 0.00 0.00 4.63
45 46 3.671433 CGTTCGGAAATACTTGTCGGAGA 60.671 47.826 0.00 0.00 0.00 3.71
46 47 4.240096 GTTCGGAAATACTTGTCGGAGAA 58.760 43.478 0.00 0.00 39.69 2.87
47 48 4.524316 TCGGAAATACTTGTCGGAGAAA 57.476 40.909 0.00 0.00 39.69 2.52
48 49 5.080969 TCGGAAATACTTGTCGGAGAAAT 57.919 39.130 0.00 0.00 39.69 2.17
49 50 4.868171 TCGGAAATACTTGTCGGAGAAATG 59.132 41.667 0.00 0.00 39.69 2.32
50 51 4.494199 CGGAAATACTTGTCGGAGAAATGC 60.494 45.833 0.00 0.00 39.69 3.56
51 52 4.394920 GGAAATACTTGTCGGAGAAATGCA 59.605 41.667 0.00 0.00 39.69 3.96
52 53 5.066505 GGAAATACTTGTCGGAGAAATGCAT 59.933 40.000 0.00 0.00 39.69 3.96
53 54 6.260050 GGAAATACTTGTCGGAGAAATGCATA 59.740 38.462 0.00 0.00 39.69 3.14
54 55 7.201696 GGAAATACTTGTCGGAGAAATGCATAA 60.202 37.037 0.00 0.00 39.69 1.90
55 56 7.624360 AATACTTGTCGGAGAAATGCATAAA 57.376 32.000 0.00 0.00 39.69 1.40
56 57 5.551760 ACTTGTCGGAGAAATGCATAAAG 57.448 39.130 0.00 0.00 39.69 1.85
57 58 5.003804 ACTTGTCGGAGAAATGCATAAAGT 58.996 37.500 0.00 0.00 39.69 2.66
58 59 5.473504 ACTTGTCGGAGAAATGCATAAAGTT 59.526 36.000 0.00 0.00 39.69 2.66
59 60 5.295431 TGTCGGAGAAATGCATAAAGTTG 57.705 39.130 0.00 0.00 39.69 3.16
60 61 5.000591 TGTCGGAGAAATGCATAAAGTTGA 58.999 37.500 0.00 0.00 39.69 3.18
61 62 5.471797 TGTCGGAGAAATGCATAAAGTTGAA 59.528 36.000 0.00 0.00 39.69 2.69
62 63 6.150976 TGTCGGAGAAATGCATAAAGTTGAAT 59.849 34.615 0.00 0.00 39.69 2.57
63 64 6.470235 GTCGGAGAAATGCATAAAGTTGAATG 59.530 38.462 0.00 0.00 39.69 2.67
64 65 6.150976 TCGGAGAAATGCATAAAGTTGAATGT 59.849 34.615 0.00 0.00 0.00 2.71
65 66 7.335673 TCGGAGAAATGCATAAAGTTGAATGTA 59.664 33.333 0.00 0.00 0.00 2.29
66 67 8.131100 CGGAGAAATGCATAAAGTTGAATGTAT 58.869 33.333 0.00 0.06 30.86 2.29
67 68 9.455847 GGAGAAATGCATAAAGTTGAATGTATC 57.544 33.333 0.00 0.00 29.57 2.24
103 104 6.865834 ACATCTAGATACATCCATTCCTCC 57.134 41.667 4.54 0.00 0.00 4.30
104 105 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
105 106 4.344978 TCTAGATACATCCATTCCTCCGG 58.655 47.826 0.00 0.00 0.00 5.14
106 107 1.625818 AGATACATCCATTCCTCCGGC 59.374 52.381 0.00 0.00 0.00 6.13
107 108 0.321671 ATACATCCATTCCTCCGGCG 59.678 55.000 0.00 0.00 0.00 6.46
108 109 0.757561 TACATCCATTCCTCCGGCGA 60.758 55.000 9.30 0.00 0.00 5.54
109 110 1.301244 CATCCATTCCTCCGGCGAG 60.301 63.158 9.30 3.68 35.72 5.03
110 111 1.762460 ATCCATTCCTCCGGCGAGT 60.762 57.895 9.30 0.00 33.93 4.18
111 112 0.469331 ATCCATTCCTCCGGCGAGTA 60.469 55.000 9.30 0.00 33.93 2.59
112 113 0.469331 TCCATTCCTCCGGCGAGTAT 60.469 55.000 9.30 0.00 33.93 2.12
113 114 0.393077 CCATTCCTCCGGCGAGTATT 59.607 55.000 9.30 0.00 33.93 1.89
114 115 1.202651 CCATTCCTCCGGCGAGTATTT 60.203 52.381 9.30 0.00 33.93 1.40
115 116 2.135933 CATTCCTCCGGCGAGTATTTC 58.864 52.381 9.30 0.00 33.93 2.17
116 117 0.462789 TTCCTCCGGCGAGTATTTCC 59.537 55.000 9.30 0.00 33.93 3.13
117 118 1.299926 CCTCCGGCGAGTATTTCCG 60.300 63.158 9.30 0.00 42.58 4.30
120 121 4.008035 CGGCGAGTATTTCCGGAC 57.992 61.111 1.83 0.00 39.52 4.79
121 122 1.942712 CGGCGAGTATTTCCGGACG 60.943 63.158 1.83 4.21 39.52 4.79
122 123 1.590792 GGCGAGTATTTCCGGACGG 60.591 63.158 1.83 3.96 0.00 4.79
123 124 1.434696 GCGAGTATTTCCGGACGGA 59.565 57.895 1.83 9.76 43.52 4.69
124 125 0.594284 GCGAGTATTTCCGGACGGAG 60.594 60.000 13.64 1.75 46.06 4.63
125 126 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30
126 127 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
127 128 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
128 129 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
129 130 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
130 131 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
131 132 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
132 133 2.044650 CCGGACGGAGGGAGTACA 60.045 66.667 4.40 0.00 37.50 2.90
133 134 1.455217 CCGGACGGAGGGAGTACAT 60.455 63.158 4.40 0.00 37.50 2.29
134 135 1.041447 CCGGACGGAGGGAGTACATT 61.041 60.000 4.40 0.00 37.50 2.71
135 136 0.822164 CGGACGGAGGGAGTACATTT 59.178 55.000 0.00 0.00 0.00 2.32
136 137 1.206371 CGGACGGAGGGAGTACATTTT 59.794 52.381 0.00 0.00 0.00 1.82
137 138 2.428171 CGGACGGAGGGAGTACATTTTA 59.572 50.000 0.00 0.00 0.00 1.52
138 139 3.119029 CGGACGGAGGGAGTACATTTTAA 60.119 47.826 0.00 0.00 0.00 1.52
139 140 4.621274 CGGACGGAGGGAGTACATTTTAAA 60.621 45.833 0.00 0.00 0.00 1.52
140 141 5.434408 GGACGGAGGGAGTACATTTTAAAT 58.566 41.667 0.00 0.00 0.00 1.40
141 142 6.585416 GGACGGAGGGAGTACATTTTAAATA 58.415 40.000 0.00 0.00 0.00 1.40
142 143 6.704937 GGACGGAGGGAGTACATTTTAAATAG 59.295 42.308 0.00 0.00 0.00 1.73
143 144 7.191593 ACGGAGGGAGTACATTTTAAATAGT 57.808 36.000 0.00 0.00 0.00 2.12
144 145 7.627311 ACGGAGGGAGTACATTTTAAATAGTT 58.373 34.615 0.00 0.00 0.00 2.24
145 146 8.761689 ACGGAGGGAGTACATTTTAAATAGTTA 58.238 33.333 0.00 0.00 0.00 2.24
146 147 9.257651 CGGAGGGAGTACATTTTAAATAGTTAG 57.742 37.037 0.00 0.00 0.00 2.34
147 148 9.053840 GGAGGGAGTACATTTTAAATAGTTAGC 57.946 37.037 0.00 0.00 0.00 3.09
148 149 9.833917 GAGGGAGTACATTTTAAATAGTTAGCT 57.166 33.333 0.00 0.00 0.00 3.32
167 168 8.239314 AGTTAGCTTAACTTTTAAATTACGGCC 58.761 33.333 0.00 0.00 46.27 6.13
168 169 5.633927 AGCTTAACTTTTAAATTACGGCCG 58.366 37.500 26.86 26.86 0.00 6.13
169 170 4.794762 GCTTAACTTTTAAATTACGGCCGG 59.205 41.667 31.76 11.88 0.00 6.13
170 171 5.619757 GCTTAACTTTTAAATTACGGCCGGT 60.620 40.000 31.76 17.55 0.00 5.28
171 172 4.424061 AACTTTTAAATTACGGCCGGTC 57.576 40.909 31.76 0.00 0.00 4.79
172 173 3.678289 ACTTTTAAATTACGGCCGGTCT 58.322 40.909 31.76 11.61 0.00 3.85
173 174 3.686241 ACTTTTAAATTACGGCCGGTCTC 59.314 43.478 31.76 0.00 0.00 3.36
174 175 3.615224 TTTAAATTACGGCCGGTCTCT 57.385 42.857 31.76 10.73 0.00 3.10
175 176 2.589798 TAAATTACGGCCGGTCTCTG 57.410 50.000 31.76 0.00 0.00 3.35
176 177 0.743345 AAATTACGGCCGGTCTCTGC 60.743 55.000 31.76 0.00 0.00 4.26
177 178 2.901051 AATTACGGCCGGTCTCTGCG 62.901 60.000 31.76 0.00 0.00 5.18
181 182 4.373116 GGCCGGTCTCTGCGTCAA 62.373 66.667 1.90 0.00 0.00 3.18
182 183 2.125512 GCCGGTCTCTGCGTCAAT 60.126 61.111 1.90 0.00 0.00 2.57
183 184 1.741770 GCCGGTCTCTGCGTCAATT 60.742 57.895 1.90 0.00 0.00 2.32
184 185 1.970917 GCCGGTCTCTGCGTCAATTG 61.971 60.000 1.90 0.00 0.00 2.32
185 186 0.389817 CCGGTCTCTGCGTCAATTGA 60.390 55.000 3.38 3.38 0.00 2.57
186 187 0.716108 CGGTCTCTGCGTCAATTGAC 59.284 55.000 25.68 25.68 41.47 3.18
187 188 1.079503 GGTCTCTGCGTCAATTGACC 58.920 55.000 28.40 21.62 41.86 4.02
188 189 1.338200 GGTCTCTGCGTCAATTGACCT 60.338 52.381 28.40 0.00 41.86 3.85
189 190 1.996191 GTCTCTGCGTCAATTGACCTC 59.004 52.381 28.40 21.16 41.86 3.85
190 191 1.895798 TCTCTGCGTCAATTGACCTCT 59.104 47.619 28.40 0.00 41.86 3.69
191 192 2.300152 TCTCTGCGTCAATTGACCTCTT 59.700 45.455 28.40 0.00 41.86 2.85
192 193 3.509967 TCTCTGCGTCAATTGACCTCTTA 59.490 43.478 28.40 12.44 41.86 2.10
193 194 4.160439 TCTCTGCGTCAATTGACCTCTTAT 59.840 41.667 28.40 0.00 41.86 1.73
194 195 4.832248 TCTGCGTCAATTGACCTCTTATT 58.168 39.130 28.40 0.00 41.86 1.40
195 196 5.972935 TCTGCGTCAATTGACCTCTTATTA 58.027 37.500 28.40 7.34 41.86 0.98
196 197 6.403049 TCTGCGTCAATTGACCTCTTATTAA 58.597 36.000 28.40 6.83 41.86 1.40
197 198 7.047891 TCTGCGTCAATTGACCTCTTATTAAT 58.952 34.615 28.40 0.00 41.86 1.40
198 199 7.552687 TCTGCGTCAATTGACCTCTTATTAATT 59.447 33.333 28.40 0.00 41.86 1.40
199 200 8.050778 TGCGTCAATTGACCTCTTATTAATTT 57.949 30.769 28.40 0.00 41.86 1.82
200 201 8.519526 TGCGTCAATTGACCTCTTATTAATTTT 58.480 29.630 28.40 0.00 41.86 1.82
201 202 8.798153 GCGTCAATTGACCTCTTATTAATTTTG 58.202 33.333 28.40 12.33 41.86 2.44
202 203 9.289303 CGTCAATTGACCTCTTATTAATTTTGG 57.711 33.333 28.40 8.09 41.86 3.28
203 204 9.087424 GTCAATTGACCTCTTATTAATTTTGGC 57.913 33.333 25.26 0.00 39.07 4.52
204 205 8.811017 TCAATTGACCTCTTATTAATTTTGGCA 58.189 29.630 3.38 0.00 0.00 4.92
205 206 9.603921 CAATTGACCTCTTATTAATTTTGGCAT 57.396 29.630 0.00 0.00 0.00 4.40
209 210 9.651913 TGACCTCTTATTAATTTTGGCATTTTC 57.348 29.630 0.00 0.00 0.00 2.29
210 211 9.875691 GACCTCTTATTAATTTTGGCATTTTCT 57.124 29.630 0.00 0.00 0.00 2.52
211 212 9.657419 ACCTCTTATTAATTTTGGCATTTTCTG 57.343 29.630 0.00 0.00 0.00 3.02
222 223 2.420628 CATTTTCTGCACTTTGGCGA 57.579 45.000 0.00 0.00 36.28 5.54
223 224 2.950433 CATTTTCTGCACTTTGGCGAT 58.050 42.857 0.00 0.00 36.28 4.58
224 225 3.319755 CATTTTCTGCACTTTGGCGATT 58.680 40.909 0.00 0.00 36.28 3.34
225 226 3.451141 TTTTCTGCACTTTGGCGATTT 57.549 38.095 0.00 0.00 36.28 2.17
226 227 2.704725 TTCTGCACTTTGGCGATTTC 57.295 45.000 0.00 0.00 36.28 2.17
227 228 1.603456 TCTGCACTTTGGCGATTTCA 58.397 45.000 0.00 0.00 36.28 2.69
228 229 1.536766 TCTGCACTTTGGCGATTTCAG 59.463 47.619 0.00 0.00 36.28 3.02
229 230 0.597568 TGCACTTTGGCGATTTCAGG 59.402 50.000 0.00 0.00 36.28 3.86
230 231 0.881118 GCACTTTGGCGATTTCAGGA 59.119 50.000 0.00 0.00 0.00 3.86
231 232 1.135575 GCACTTTGGCGATTTCAGGAG 60.136 52.381 0.00 0.00 0.00 3.69
232 233 2.154462 CACTTTGGCGATTTCAGGAGT 58.846 47.619 0.00 0.00 0.00 3.85
233 234 2.554032 CACTTTGGCGATTTCAGGAGTT 59.446 45.455 0.00 0.00 0.00 3.01
234 235 3.751175 CACTTTGGCGATTTCAGGAGTTA 59.249 43.478 0.00 0.00 0.00 2.24
235 236 3.751698 ACTTTGGCGATTTCAGGAGTTAC 59.248 43.478 0.00 0.00 0.00 2.50
236 237 2.396590 TGGCGATTTCAGGAGTTACC 57.603 50.000 0.00 0.00 39.35 2.85
237 238 1.287425 GGCGATTTCAGGAGTTACCG 58.713 55.000 0.00 0.00 44.74 4.02
238 239 1.405121 GGCGATTTCAGGAGTTACCGT 60.405 52.381 0.00 0.00 44.74 4.83
239 240 2.159198 GGCGATTTCAGGAGTTACCGTA 60.159 50.000 0.00 0.00 44.74 4.02
240 241 3.492137 GGCGATTTCAGGAGTTACCGTAT 60.492 47.826 0.00 0.00 44.74 3.06
241 242 3.489785 GCGATTTCAGGAGTTACCGTATG 59.510 47.826 0.00 0.00 44.74 2.39
242 243 4.049186 CGATTTCAGGAGTTACCGTATGG 58.951 47.826 0.00 0.00 44.74 2.74
243 244 2.973694 TTCAGGAGTTACCGTATGGC 57.026 50.000 0.00 0.00 44.74 4.40
244 245 0.742505 TCAGGAGTTACCGTATGGCG 59.257 55.000 0.00 0.00 44.74 5.69
245 246 0.874607 CAGGAGTTACCGTATGGCGC 60.875 60.000 0.00 0.00 44.74 6.53
246 247 1.041447 AGGAGTTACCGTATGGCGCT 61.041 55.000 7.64 0.00 44.74 5.92
247 248 0.596859 GGAGTTACCGTATGGCGCTC 60.597 60.000 7.64 6.22 39.70 5.03
248 249 0.384669 GAGTTACCGTATGGCGCTCT 59.615 55.000 7.64 0.00 39.70 4.09
249 250 0.822164 AGTTACCGTATGGCGCTCTT 59.178 50.000 7.64 0.00 39.70 2.85
250 251 1.206371 AGTTACCGTATGGCGCTCTTT 59.794 47.619 7.64 0.00 39.70 2.52
251 252 2.004733 GTTACCGTATGGCGCTCTTTT 58.995 47.619 7.64 0.00 39.70 2.27
252 253 2.389962 TACCGTATGGCGCTCTTTTT 57.610 45.000 7.64 0.00 39.70 1.94
269 270 2.500392 TTTTAGATTCACCACCCGGG 57.500 50.000 22.25 22.25 44.81 5.73
283 284 4.351938 CGGGTCCGACGCTGACAA 62.352 66.667 13.19 0.00 42.83 3.18
284 285 2.737376 GGGTCCGACGCTGACAAC 60.737 66.667 8.29 0.00 34.36 3.32
285 286 2.737376 GGTCCGACGCTGACAACC 60.737 66.667 6.59 0.00 34.36 3.77
286 287 2.028484 GTCCGACGCTGACAACCA 59.972 61.111 0.00 0.00 32.91 3.67
287 288 2.022129 GTCCGACGCTGACAACCAG 61.022 63.158 0.00 0.00 45.67 4.00
288 289 2.738521 CCGACGCTGACAACCAGG 60.739 66.667 0.00 0.00 43.13 4.45
289 290 2.338620 CGACGCTGACAACCAGGA 59.661 61.111 0.00 0.00 43.13 3.86
290 291 1.079819 CGACGCTGACAACCAGGAT 60.080 57.895 0.00 0.00 43.13 3.24
291 292 1.354337 CGACGCTGACAACCAGGATG 61.354 60.000 0.00 0.00 43.13 3.51
292 293 1.639298 GACGCTGACAACCAGGATGC 61.639 60.000 0.00 0.00 43.13 3.91
293 294 2.401766 CGCTGACAACCAGGATGCC 61.402 63.158 0.00 0.00 43.13 4.40
294 295 2.048603 GCTGACAACCAGGATGCCC 61.049 63.158 0.00 0.00 43.13 5.36
295 296 1.379916 CTGACAACCAGGATGCCCA 59.620 57.895 0.00 0.00 39.23 5.36
296 297 0.033796 CTGACAACCAGGATGCCCAT 60.034 55.000 0.00 0.00 39.23 4.00
297 298 1.212688 CTGACAACCAGGATGCCCATA 59.787 52.381 0.00 0.00 39.23 2.74
298 299 1.852309 TGACAACCAGGATGCCCATAT 59.148 47.619 0.00 0.00 33.88 1.78
299 300 2.233271 GACAACCAGGATGCCCATATG 58.767 52.381 0.00 0.00 33.88 1.78
300 301 1.133388 ACAACCAGGATGCCCATATGG 60.133 52.381 15.41 15.41 35.18 2.74
361 378 3.117474 ACCGACTGATGAGAAGGGAGATA 60.117 47.826 0.00 0.00 0.00 1.98
362 379 3.254657 CCGACTGATGAGAAGGGAGATAC 59.745 52.174 0.00 0.00 0.00 2.24
363 380 4.141287 CGACTGATGAGAAGGGAGATACT 58.859 47.826 0.00 0.00 0.00 2.12
364 381 5.309638 CGACTGATGAGAAGGGAGATACTA 58.690 45.833 0.00 0.00 0.00 1.82
365 382 5.180492 CGACTGATGAGAAGGGAGATACTAC 59.820 48.000 0.00 0.00 0.00 2.73
383 400 3.439476 ACTACTACACTGTTGGAGCTACG 59.561 47.826 3.00 0.00 37.14 3.51
390 407 1.666872 GTTGGAGCTACGCGTTGGT 60.667 57.895 24.35 24.35 0.00 3.67
392 409 2.879462 GGAGCTACGCGTTGGTCG 60.879 66.667 34.11 14.78 43.12 4.79
452 469 1.729484 TCGTTGACAGAGCGCGAAG 60.729 57.895 12.10 0.00 0.00 3.79
475 492 3.872696 TCAAAGGCAGCAGATAAATCGA 58.127 40.909 0.00 0.00 0.00 3.59
476 493 4.454678 TCAAAGGCAGCAGATAAATCGAT 58.545 39.130 0.00 0.00 0.00 3.59
477 494 5.610398 TCAAAGGCAGCAGATAAATCGATA 58.390 37.500 0.00 0.00 0.00 2.92
478 495 5.698089 TCAAAGGCAGCAGATAAATCGATAG 59.302 40.000 0.00 0.00 0.00 2.08
525 543 3.847602 CTCTCCGGGCAGAGCAGG 61.848 72.222 7.20 0.00 33.73 4.85
526 544 4.382541 TCTCCGGGCAGAGCAGGA 62.383 66.667 0.00 5.56 36.04 3.86
527 545 3.847602 CTCCGGGCAGAGCAGGAG 61.848 72.222 14.95 14.95 43.93 3.69
652 675 5.041940 GCAACGGATTTCTACCAGTACTAG 58.958 45.833 0.00 0.00 0.00 2.57
726 756 1.694018 CGACGACGAGACGACTCCAT 61.694 60.000 9.30 0.00 42.66 3.41
727 757 1.284657 GACGACGAGACGACTCCATA 58.715 55.000 9.30 0.00 39.76 2.74
728 758 1.005137 GACGACGAGACGACTCCATAC 60.005 57.143 9.30 0.00 39.76 2.39
729 759 1.004595 CGACGAGACGACTCCATACA 58.995 55.000 9.30 0.00 39.76 2.29
777 807 0.895559 CCAAGCAAGTCCAACCCCTC 60.896 60.000 0.00 0.00 0.00 4.30
778 808 0.895559 CAAGCAAGTCCAACCCCTCC 60.896 60.000 0.00 0.00 0.00 4.30
779 809 1.068352 AAGCAAGTCCAACCCCTCCT 61.068 55.000 0.00 0.00 0.00 3.69
780 810 1.002011 GCAAGTCCAACCCCTCCTC 60.002 63.158 0.00 0.00 0.00 3.71
781 811 1.685820 CAAGTCCAACCCCTCCTCC 59.314 63.158 0.00 0.00 0.00 4.30
782 812 1.133809 CAAGTCCAACCCCTCCTCCA 61.134 60.000 0.00 0.00 0.00 3.86
783 813 0.178831 AAGTCCAACCCCTCCTCCAT 60.179 55.000 0.00 0.00 0.00 3.41
784 814 0.621862 AGTCCAACCCCTCCTCCATC 60.622 60.000 0.00 0.00 0.00 3.51
785 815 1.307866 TCCAACCCCTCCTCCATCC 60.308 63.158 0.00 0.00 0.00 3.51
786 816 2.386935 CCAACCCCTCCTCCATCCC 61.387 68.421 0.00 0.00 0.00 3.85
787 817 1.308216 CAACCCCTCCTCCATCCCT 60.308 63.158 0.00 0.00 0.00 4.20
788 818 1.004891 AACCCCTCCTCCATCCCTC 59.995 63.158 0.00 0.00 0.00 4.30
789 819 2.122189 CCCCTCCTCCATCCCTCC 60.122 72.222 0.00 0.00 0.00 4.30
790 820 2.122189 CCCTCCTCCATCCCTCCC 60.122 72.222 0.00 0.00 0.00 4.30
791 821 2.731461 CCCTCCTCCATCCCTCCCT 61.731 68.421 0.00 0.00 0.00 4.20
792 822 1.152139 CCTCCTCCATCCCTCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
793 823 1.152139 CTCCTCCATCCCTCCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
794 824 2.122189 CCTCCATCCCTCCCTCCC 60.122 72.222 0.00 0.00 0.00 4.30
817 847 1.303074 CCCATCCATCCATCCGCAG 60.303 63.158 0.00 0.00 0.00 5.18
878 909 0.544357 TCTTTTCTCGGCCTCTCCCA 60.544 55.000 0.00 0.00 0.00 4.37
937 968 2.358737 CGCTTCCGTCCAAAGGCT 60.359 61.111 0.00 0.00 0.00 4.58
1110 1141 4.500116 GTGACCTCGCCGGAGAGC 62.500 72.222 27.96 16.52 43.27 4.09
1304 1335 3.424962 CGCGGAGGTGATTCTTTTCTTTC 60.425 47.826 0.00 0.00 0.00 2.62
1305 1336 3.424962 GCGGAGGTGATTCTTTTCTTTCG 60.425 47.826 0.00 0.00 0.00 3.46
1306 1337 3.125316 CGGAGGTGATTCTTTTCTTTCGG 59.875 47.826 0.00 0.00 0.00 4.30
1307 1338 4.324267 GGAGGTGATTCTTTTCTTTCGGA 58.676 43.478 0.00 0.00 0.00 4.55
1309 1340 5.065346 GGAGGTGATTCTTTTCTTTCGGATC 59.935 44.000 0.00 0.00 0.00 3.36
1310 1341 5.810095 AGGTGATTCTTTTCTTTCGGATCT 58.190 37.500 0.00 0.00 0.00 2.75
1311 1342 6.241645 AGGTGATTCTTTTCTTTCGGATCTT 58.758 36.000 0.00 0.00 0.00 2.40
1313 1344 5.797434 GTGATTCTTTTCTTTCGGATCTTGC 59.203 40.000 0.00 0.00 0.00 4.01
1317 1349 6.002062 TCTTTTCTTTCGGATCTTGCTTTC 57.998 37.500 0.00 0.00 0.00 2.62
1320 1352 4.021102 TCTTTCGGATCTTGCTTTCCTT 57.979 40.909 0.00 0.00 0.00 3.36
1388 1428 5.031066 TGGCGATTAATACTACTGGCTTT 57.969 39.130 0.00 0.00 0.00 3.51
1519 1570 5.996513 ACTAGCATCAATCATTAGCTTCCAG 59.003 40.000 0.00 0.00 36.80 3.86
1614 1669 0.617249 TGCATGGGGGATTGGTTTCC 60.617 55.000 0.00 0.00 34.83 3.13
1751 1807 3.281727 AAAGAACACAAGTCCTGCTGA 57.718 42.857 0.00 0.00 0.00 4.26
1778 1834 8.016301 TGCTCTAGTAACATCATCATCTCTTT 57.984 34.615 0.00 0.00 0.00 2.52
1859 1917 2.223665 GCCAGAATGAGCAGGCATAAAC 60.224 50.000 0.00 0.00 46.26 2.01
2110 2547 4.358851 TGAATATGCCTAAAAATGTGCGC 58.641 39.130 0.00 0.00 0.00 6.09
2129 2566 2.286772 CGCCGGTGCTTAATTATGTTCC 60.287 50.000 0.00 3.21 34.43 3.62
2147 2584 0.671796 CCGGTTTTGGTCCTGGTTTC 59.328 55.000 0.00 0.00 0.00 2.78
2160 2597 2.737252 CCTGGTTTCGAGTCTTGTAAGC 59.263 50.000 2.53 2.53 0.00 3.09
2220 2657 3.632145 GCACATTTAGATGGTTCGGGAAT 59.368 43.478 0.00 0.00 37.60 3.01
2259 2696 4.740268 AGTTGACGCGATGAAATAGTACA 58.260 39.130 15.93 0.00 0.00 2.90
2261 2698 3.103007 TGACGCGATGAAATAGTACACG 58.897 45.455 15.93 0.00 0.00 4.49
2262 2699 2.456989 ACGCGATGAAATAGTACACGG 58.543 47.619 15.93 0.00 0.00 4.94
2315 2752 3.199946 GGAACCCCATCTGACATGTAAGA 59.800 47.826 15.55 15.55 0.00 2.10
2349 2786 4.009675 CAGGGCAAAACAGCTCTATTGTA 58.990 43.478 0.00 0.00 45.41 2.41
2406 2844 7.269724 GCTCGTGGTGTTAAAACATGTAATTAC 59.730 37.037 8.75 8.75 41.59 1.89
2799 3240 5.953183 TGGACAAACAGTAATGATGAATGC 58.047 37.500 0.00 0.00 0.00 3.56
3273 3714 6.690194 ATTTTGCTAATCCTGCAGAGTTAG 57.310 37.500 17.39 21.20 41.71 2.34
3274 3715 3.185246 TGCTAATCCTGCAGAGTTAGC 57.815 47.619 33.25 33.25 45.64 3.09
3281 3722 5.683876 ATCCTGCAGAGTTAGCTTTTCTA 57.316 39.130 17.39 0.00 0.00 2.10
3337 3778 0.538287 GCTCCTTGCAGGTTTGGACT 60.538 55.000 0.00 0.00 42.31 3.85
3659 4296 5.163488 CCCCGATATTGTCTGTGTTACAGTA 60.163 44.000 8.64 0.00 46.03 2.74
3880 4517 4.097892 ACAAATGAGTGTTTGGAGAACCAC 59.902 41.667 4.63 0.00 46.80 4.16
4271 7477 7.352739 AGTTACGTCAATTCTTTGTAAGCTTG 58.647 34.615 9.86 0.00 34.32 4.01
4412 7618 8.229253 TGACTAGACGTTATTATGAGGCTTAA 57.771 34.615 0.00 0.00 0.00 1.85
4439 7645 8.379457 AGTTTTAGTTGCGATTCTTTAGAAGT 57.621 30.769 0.00 0.00 37.48 3.01
4873 8081 6.570186 GCAAATCCGTATTGAATGCCATATCA 60.570 38.462 0.00 0.00 0.00 2.15
4926 8140 1.831106 TGCTGTGTCCTGGTATCGATT 59.169 47.619 1.71 0.00 0.00 3.34
4989 8203 6.277605 CATGTTAGATACGTGGTGGATACAA 58.722 40.000 0.00 0.00 40.95 2.41
5022 8236 7.993183 CCAATAATAGTCCATAACTCACAAGGT 59.007 37.037 0.00 0.00 39.55 3.50
5079 8293 1.065126 CATCACTTTCCTGACTCCCCC 60.065 57.143 0.00 0.00 0.00 5.40
5105 8319 0.545309 TCCTCTGTCCTGACCCCAAG 60.545 60.000 0.00 0.00 0.00 3.61
5162 8378 9.080097 CATAGTGGGAGTAACTTAGCTAGTAAT 57.920 37.037 0.00 0.00 35.54 1.89
5232 8448 2.829120 GAGAGAGGTGCTTGGAGTAACT 59.171 50.000 0.00 0.00 27.69 2.24
5283 8500 5.529060 CCAAGAAAAGTTGAGTCTACAAGCT 59.471 40.000 7.47 0.00 0.00 3.74
5284 8501 6.706270 CCAAGAAAAGTTGAGTCTACAAGCTA 59.294 38.462 7.47 0.00 0.00 3.32
5285 8502 7.226720 CCAAGAAAAGTTGAGTCTACAAGCTAA 59.773 37.037 7.47 0.00 0.00 3.09
5383 8600 7.652727 TCATATGCATGACACTAGTCTAAGTC 58.347 38.462 10.16 0.00 45.20 3.01
5386 8603 4.082190 TGCATGACACTAGTCTAAGTCACC 60.082 45.833 14.09 9.87 45.20 4.02
5459 8676 2.793933 CGACTAGTAGGCGGTTGTAAGC 60.794 54.545 18.11 0.00 44.58 3.09
5460 8677 2.426381 GACTAGTAGGCGGTTGTAAGCT 59.574 50.000 0.00 0.00 0.00 3.74
5461 8678 2.426381 ACTAGTAGGCGGTTGTAAGCTC 59.574 50.000 1.45 0.00 0.00 4.09
5521 8773 0.685097 TATCTCCTACGGGCAATGGC 59.315 55.000 0.00 0.00 40.13 4.40
5564 8816 0.804989 GGGGCAATCGAACAGACAAG 59.195 55.000 0.00 0.00 0.00 3.16
5659 8911 6.595682 AGCTAAGCATAACCACATATTGTCT 58.404 36.000 0.00 0.00 0.00 3.41
5808 9077 8.116669 TGGGGTTGTTTTATTGATATCACCTTA 58.883 33.333 4.48 0.00 0.00 2.69
6044 9331 7.044798 CCTAACCTGAGATTTCTCCTTAACTG 58.955 42.308 5.17 0.00 42.20 3.16
6059 9346 8.095169 TCTCCTTAACTGTCTTGTTATTTCTCC 58.905 37.037 0.00 0.00 33.16 3.71
6061 9348 8.437575 TCCTTAACTGTCTTGTTATTTCTCCTT 58.562 33.333 0.00 0.00 33.16 3.36
6064 9351 7.497925 AACTGTCTTGTTATTTCTCCTTCAC 57.502 36.000 0.00 0.00 0.00 3.18
6074 9467 7.759886 TGTTATTTCTCCTTCACGTGATAAGAG 59.240 37.037 20.80 22.67 0.00 2.85
6080 9473 3.125316 CCTTCACGTGATAAGAGGCAAAC 59.875 47.826 20.80 0.00 0.00 2.93
6082 9475 3.325870 TCACGTGATAAGAGGCAAACTG 58.674 45.455 15.76 0.00 0.00 3.16
6291 9685 9.426837 ACAATGATTTTCCTTGATGTTTGTATG 57.573 29.630 0.00 0.00 0.00 2.39
6304 9788 9.636879 TTGATGTTTGTATGTGGTGAATTATTG 57.363 29.630 0.00 0.00 0.00 1.90
6387 9889 7.970102 ACTGTAAGGGTAGTTTCTATTCACAA 58.030 34.615 0.00 0.00 39.30 3.33
6402 9904 7.276658 TCTATTCACAAAAGTTGGTACAGTCA 58.723 34.615 0.00 0.00 42.39 3.41
6409 9911 6.655848 ACAAAAGTTGGTACAGTCACAGTTTA 59.344 34.615 0.00 0.00 42.39 2.01
6418 9920 8.205512 TGGTACAGTCACAGTTTAAAGTATTGA 58.794 33.333 0.00 0.00 0.00 2.57
6432 9934 3.743521 AGTATTGACAAGTGAAGCAGCA 58.256 40.909 0.00 0.00 0.00 4.41
6469 9971 0.825410 ACCGTAATCCGCACCACATA 59.175 50.000 0.00 0.00 34.38 2.29
6478 9980 1.473965 CCGCACCACATAGATCTTGCT 60.474 52.381 0.00 0.00 0.00 3.91
6486 9988 5.604231 ACCACATAGATCTTGCTCTCCATTA 59.396 40.000 0.00 0.00 0.00 1.90
6611 10126 8.506140 AATTGTGTCACAGTTTAATTTGATCG 57.494 30.769 7.84 0.00 0.00 3.69
6797 10312 5.163437 ACGGGTAAAACATCTCTACTCATCC 60.163 44.000 0.00 0.00 0.00 3.51
6798 10313 5.069251 CGGGTAAAACATCTCTACTCATCCT 59.931 44.000 0.00 0.00 0.00 3.24
7058 10578 3.710233 GCGTGCAGCGTATGTATTC 57.290 52.632 9.76 0.00 43.66 1.75
7215 10742 0.706433 TCACGGTTACCCTACTCCCT 59.294 55.000 0.00 0.00 0.00 4.20
7247 10774 5.109662 TCTAGACTCATTGCATACTACGC 57.890 43.478 0.00 0.00 0.00 4.42
7344 10921 4.593634 GGAGCCTAGAGGTGGTATACAATT 59.406 45.833 5.01 0.00 37.57 2.32
7363 10940 6.738352 CAATTCTTTTCGAAGTGGTCAAAG 57.262 37.500 0.00 0.00 42.39 2.77
7365 10942 3.275143 TCTTTTCGAAGTGGTCAAAGCA 58.725 40.909 0.00 0.00 0.00 3.91
7434 11012 3.526534 GAACATTTCCTTCTCCTCTCGG 58.473 50.000 0.00 0.00 0.00 4.63
7478 11057 3.904965 TGTGGGTGTCAAGGTAATACTCA 59.095 43.478 0.00 0.00 0.00 3.41
7480 11059 4.020485 GTGGGTGTCAAGGTAATACTCACT 60.020 45.833 0.00 0.00 39.14 3.41
7489 11068 4.684724 AGGTAATACTCACTCAGTCCCAA 58.315 43.478 0.00 0.00 36.43 4.12
7491 11070 5.726793 AGGTAATACTCACTCAGTCCCAAAT 59.273 40.000 0.00 0.00 36.43 2.32
7494 11073 8.044908 GGTAATACTCACTCAGTCCCAAATTAA 58.955 37.037 0.00 0.00 36.43 1.40
7499 11078 6.431234 ACTCACTCAGTCCCAAATTAAATGAC 59.569 38.462 0.00 0.00 0.00 3.06
7501 11080 7.004086 TCACTCAGTCCCAAATTAAATGACTT 58.996 34.615 0.00 0.00 34.21 3.01
7502 11081 8.160765 TCACTCAGTCCCAAATTAAATGACTTA 58.839 33.333 0.00 0.00 34.21 2.24
7504 11083 8.793592 ACTCAGTCCCAAATTAAATGACTTAAC 58.206 33.333 0.00 0.00 34.21 2.01
7508 11087 9.981114 AGTCCCAAATTAAATGACTTAACTTTG 57.019 29.630 0.00 0.00 32.61 2.77
7509 11088 9.758651 GTCCCAAATTAAATGACTTAACTTTGT 57.241 29.630 0.00 0.00 32.77 2.83
7561 11140 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
7562 11141 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
7563 11142 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
7564 11143 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
7565 11144 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
7566 11145 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
7567 11146 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
7568 11147 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
7569 11148 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
7570 11149 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
7571 11150 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
7572 11151 1.961133 TTGGGACGGAGGGAGTATTT 58.039 50.000 0.00 0.00 0.00 1.40
7573 11152 2.852714 TGGGACGGAGGGAGTATTTA 57.147 50.000 0.00 0.00 0.00 1.40
7574 11153 2.391678 TGGGACGGAGGGAGTATTTAC 58.608 52.381 0.00 0.00 0.00 2.01
7575 11154 1.690893 GGGACGGAGGGAGTATTTACC 59.309 57.143 0.00 0.00 0.00 2.85
7576 11155 2.391678 GGACGGAGGGAGTATTTACCA 58.608 52.381 0.00 0.00 0.00 3.25
7577 11156 2.970640 GGACGGAGGGAGTATTTACCAT 59.029 50.000 0.00 0.00 0.00 3.55
7578 11157 3.390311 GGACGGAGGGAGTATTTACCATT 59.610 47.826 0.00 0.00 0.00 3.16
7579 11158 4.377897 GACGGAGGGAGTATTTACCATTG 58.622 47.826 0.00 0.00 0.00 2.82
7580 11159 4.035112 ACGGAGGGAGTATTTACCATTGA 58.965 43.478 0.00 0.00 0.00 2.57
7581 11160 4.101119 ACGGAGGGAGTATTTACCATTGAG 59.899 45.833 0.00 0.00 0.00 3.02
7582 11161 4.503296 CGGAGGGAGTATTTACCATTGAGG 60.503 50.000 0.00 0.00 45.67 3.86
7583 11162 4.658901 GGAGGGAGTATTTACCATTGAGGA 59.341 45.833 0.00 0.00 41.22 3.71
7584 11163 5.454897 GGAGGGAGTATTTACCATTGAGGAC 60.455 48.000 0.00 0.00 41.22 3.85
7585 11164 4.412528 AGGGAGTATTTACCATTGAGGACC 59.587 45.833 0.00 0.00 41.22 4.46
7586 11165 4.165372 GGGAGTATTTACCATTGAGGACCA 59.835 45.833 0.00 0.00 41.22 4.02
7587 11166 5.123936 GGAGTATTTACCATTGAGGACCAC 58.876 45.833 0.00 0.00 41.22 4.16
7588 11167 4.766375 AGTATTTACCATTGAGGACCACG 58.234 43.478 0.00 0.00 41.22 4.94
7589 11168 3.992943 ATTTACCATTGAGGACCACGA 57.007 42.857 0.00 0.00 41.22 4.35
7590 11169 3.992943 TTTACCATTGAGGACCACGAT 57.007 42.857 0.00 0.00 41.22 3.73
7591 11170 5.623956 ATTTACCATTGAGGACCACGATA 57.376 39.130 0.00 0.00 41.22 2.92
7592 11171 4.665833 TTACCATTGAGGACCACGATAG 57.334 45.455 0.00 0.00 41.22 2.08
7614 11193 2.039879 TGGAGAGGCCAGGAAGTAAAAC 59.960 50.000 5.01 0.00 43.33 2.43
7615 11194 2.039879 GGAGAGGCCAGGAAGTAAAACA 59.960 50.000 5.01 0.00 36.34 2.83
7660 11239 1.493772 TACACGTGAAAACTGCCTCG 58.506 50.000 25.01 0.00 0.00 4.63
7661 11240 0.179094 ACACGTGAAAACTGCCTCGA 60.179 50.000 25.01 0.00 0.00 4.04
7662 11241 1.148310 CACGTGAAAACTGCCTCGAT 58.852 50.000 10.90 0.00 0.00 3.59
7664 11243 1.270094 ACGTGAAAACTGCCTCGATGA 60.270 47.619 0.00 0.00 0.00 2.92
7666 11245 3.186909 CGTGAAAACTGCCTCGATGATA 58.813 45.455 0.00 0.00 0.00 2.15
7667 11246 3.616821 CGTGAAAACTGCCTCGATGATAA 59.383 43.478 0.00 0.00 0.00 1.75
7668 11247 4.092821 CGTGAAAACTGCCTCGATGATAAA 59.907 41.667 0.00 0.00 0.00 1.40
7669 11248 5.220662 CGTGAAAACTGCCTCGATGATAAAT 60.221 40.000 0.00 0.00 0.00 1.40
7670 11249 6.019075 CGTGAAAACTGCCTCGATGATAAATA 60.019 38.462 0.00 0.00 0.00 1.40
7671 11250 7.307396 CGTGAAAACTGCCTCGATGATAAATAT 60.307 37.037 0.00 0.00 0.00 1.28
7672 11251 8.345565 GTGAAAACTGCCTCGATGATAAATATT 58.654 33.333 0.00 0.00 0.00 1.28
7673 11252 9.554395 TGAAAACTGCCTCGATGATAAATATTA 57.446 29.630 0.00 0.00 0.00 0.98
7678 11257 9.319143 ACTGCCTCGATGATAAATATTATTAGC 57.681 33.333 0.00 0.00 0.00 3.09
7695 11274 1.188219 AGCTCTTGCAACTCCGGAGA 61.188 55.000 37.69 12.96 42.74 3.71
7702 11323 1.592223 CAACTCCGGAGACACCCTC 59.408 63.158 37.69 0.00 41.22 4.30
7719 11340 4.003788 CGTTGGCGGTGGTCTCCT 62.004 66.667 0.00 0.00 0.00 3.69
7783 11446 2.788807 TCTCCTAAGCCTCCTCTCTCAT 59.211 50.000 0.00 0.00 0.00 2.90
7835 11498 0.109412 GTGCTGCTCTTCAATGGCAC 60.109 55.000 0.00 0.00 42.04 5.01
7838 11501 1.135460 GCTGCTCTTCAATGGCACTTC 60.135 52.381 0.00 0.00 32.33 3.01
7841 11504 1.813513 CTCTTCAATGGCACTTCGGT 58.186 50.000 0.00 0.00 0.00 4.69
7871 11535 3.971150 CTCGTGTAGCTCCTTCTTATGG 58.029 50.000 0.00 0.00 0.00 2.74
7943 11607 2.028125 GCCCCTGATTCGATCCGACA 62.028 60.000 0.00 0.00 34.89 4.35
7947 11611 1.001268 CCTGATTCGATCCGACACGAT 60.001 52.381 0.00 0.00 38.30 3.73
7949 11613 1.269051 TGATTCGATCCGACACGATGG 60.269 52.381 0.00 0.00 38.30 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.711457 CGAACGGAGGAAGTAAAATAAAAGTTA 58.289 33.333 0.00 0.00 0.00 2.24
3 4 7.308169 CCGAACGGAGGAAGTAAAATAAAAGTT 60.308 37.037 7.53 0.00 37.50 2.66
4 5 6.148315 CCGAACGGAGGAAGTAAAATAAAAGT 59.852 38.462 7.53 0.00 37.50 2.66
5 6 6.369615 TCCGAACGGAGGAAGTAAAATAAAAG 59.630 38.462 12.04 0.00 39.76 2.27
6 7 6.229733 TCCGAACGGAGGAAGTAAAATAAAA 58.770 36.000 12.04 0.00 39.76 1.52
7 8 5.792741 TCCGAACGGAGGAAGTAAAATAAA 58.207 37.500 12.04 0.00 39.76 1.40
8 9 5.404466 TCCGAACGGAGGAAGTAAAATAA 57.596 39.130 12.04 0.00 39.76 1.40
9 10 5.404466 TTCCGAACGGAGGAAGTAAAATA 57.596 39.130 15.34 0.00 46.06 1.40
10 11 3.967332 TCCGAACGGAGGAAGTAAAAT 57.033 42.857 12.04 0.00 39.76 1.82
11 12 3.749665 TTCCGAACGGAGGAAGTAAAA 57.250 42.857 15.34 0.00 46.06 1.52
17 18 3.007182 ACAAGTATTTCCGAACGGAGGAA 59.993 43.478 15.34 9.10 46.06 3.36
18 19 2.564062 ACAAGTATTTCCGAACGGAGGA 59.436 45.455 15.34 9.43 46.06 3.71
19 20 2.928116 GACAAGTATTTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
20 21 2.597305 CGACAAGTATTTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
21 22 2.598589 CGACAAGTATTTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
22 23 1.657094 CCGACAAGTATTTCCGAACGG 59.343 52.381 6.94 6.94 0.00 4.44
23 24 2.597305 CTCCGACAAGTATTTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
24 25 3.841643 TCTCCGACAAGTATTTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
25 26 4.524316 TTCTCCGACAAGTATTTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
26 27 4.524316 TTTCTCCGACAAGTATTTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
27 28 4.494199 GCATTTCTCCGACAAGTATTTCCG 60.494 45.833 0.00 0.00 0.00 4.30
28 29 4.394920 TGCATTTCTCCGACAAGTATTTCC 59.605 41.667 0.00 0.00 0.00 3.13
29 30 5.545658 TGCATTTCTCCGACAAGTATTTC 57.454 39.130 0.00 0.00 0.00 2.17
30 31 7.624360 TTATGCATTTCTCCGACAAGTATTT 57.376 32.000 3.54 0.00 0.00 1.40
31 32 7.336931 ACTTTATGCATTTCTCCGACAAGTATT 59.663 33.333 3.54 0.00 0.00 1.89
32 33 6.823689 ACTTTATGCATTTCTCCGACAAGTAT 59.176 34.615 3.54 0.00 0.00 2.12
33 34 6.170506 ACTTTATGCATTTCTCCGACAAGTA 58.829 36.000 3.54 0.00 0.00 2.24
34 35 5.003804 ACTTTATGCATTTCTCCGACAAGT 58.996 37.500 3.54 0.00 0.00 3.16
35 36 5.551760 ACTTTATGCATTTCTCCGACAAG 57.448 39.130 3.54 0.00 0.00 3.16
36 37 5.471797 TCAACTTTATGCATTTCTCCGACAA 59.528 36.000 3.54 0.00 0.00 3.18
37 38 5.000591 TCAACTTTATGCATTTCTCCGACA 58.999 37.500 3.54 0.00 0.00 4.35
38 39 5.545658 TCAACTTTATGCATTTCTCCGAC 57.454 39.130 3.54 0.00 0.00 4.79
39 40 6.150976 ACATTCAACTTTATGCATTTCTCCGA 59.849 34.615 3.54 0.00 0.00 4.55
40 41 6.324819 ACATTCAACTTTATGCATTTCTCCG 58.675 36.000 3.54 0.00 0.00 4.63
41 42 9.455847 GATACATTCAACTTTATGCATTTCTCC 57.544 33.333 3.54 0.00 0.00 3.71
77 78 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
78 79 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
79 80 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
80 81 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
81 82 5.900425 CGGAGGAATGGATGTATCTAGATG 58.100 45.833 15.79 0.00 0.00 2.90
100 101 4.320971 CGGAAATACTCGCCGGAG 57.679 61.111 5.05 0.00 46.13 4.63
103 104 1.942712 CGTCCGGAAATACTCGCCG 60.943 63.158 5.23 0.00 44.42 6.46
104 105 1.590792 CCGTCCGGAAATACTCGCC 60.591 63.158 5.23 0.00 37.50 5.54
105 106 0.594284 CTCCGTCCGGAAATACTCGC 60.594 60.000 5.23 0.00 44.66 5.03
106 107 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
107 108 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
108 109 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
109 110 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
110 111 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
111 112 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
112 113 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
113 114 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
114 115 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
115 116 1.041447 AATGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
116 117 0.822164 AAATGTACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
117 118 4.476628 TTAAAATGTACTCCCTCCGTCC 57.523 45.455 0.00 0.00 0.00 4.79
118 119 7.270779 ACTATTTAAAATGTACTCCCTCCGTC 58.729 38.462 0.00 0.00 0.00 4.79
119 120 7.191593 ACTATTTAAAATGTACTCCCTCCGT 57.808 36.000 0.00 0.00 0.00 4.69
120 121 9.257651 CTAACTATTTAAAATGTACTCCCTCCG 57.742 37.037 0.00 0.00 0.00 4.63
121 122 9.053840 GCTAACTATTTAAAATGTACTCCCTCC 57.946 37.037 0.00 0.00 0.00 4.30
122 123 9.833917 AGCTAACTATTTAAAATGTACTCCCTC 57.166 33.333 0.00 0.00 0.00 4.30
142 143 7.216881 CGGCCGTAATTTAAAAGTTAAGCTAAC 59.783 37.037 19.50 0.00 38.94 2.34
143 144 7.242783 CGGCCGTAATTTAAAAGTTAAGCTAA 58.757 34.615 19.50 0.00 0.00 3.09
144 145 6.183360 CCGGCCGTAATTTAAAAGTTAAGCTA 60.183 38.462 26.12 0.00 0.00 3.32
145 146 5.392272 CCGGCCGTAATTTAAAAGTTAAGCT 60.392 40.000 26.12 0.00 0.00 3.74
146 147 4.794762 CCGGCCGTAATTTAAAAGTTAAGC 59.205 41.667 26.12 0.00 0.00 3.09
147 148 5.941733 ACCGGCCGTAATTTAAAAGTTAAG 58.058 37.500 26.12 4.35 0.00 1.85
148 149 5.704978 AGACCGGCCGTAATTTAAAAGTTAA 59.295 36.000 26.12 0.00 0.00 2.01
149 150 5.244755 AGACCGGCCGTAATTTAAAAGTTA 58.755 37.500 26.12 0.00 0.00 2.24
150 151 4.074259 AGACCGGCCGTAATTTAAAAGTT 58.926 39.130 26.12 0.00 0.00 2.66
151 152 3.678289 AGACCGGCCGTAATTTAAAAGT 58.322 40.909 26.12 10.46 0.00 2.66
152 153 3.937079 AGAGACCGGCCGTAATTTAAAAG 59.063 43.478 26.12 6.79 0.00 2.27
153 154 3.685756 CAGAGACCGGCCGTAATTTAAAA 59.314 43.478 26.12 0.00 0.00 1.52
154 155 3.264104 CAGAGACCGGCCGTAATTTAAA 58.736 45.455 26.12 0.00 0.00 1.52
155 156 2.896168 CAGAGACCGGCCGTAATTTAA 58.104 47.619 26.12 0.00 0.00 1.52
156 157 1.472026 GCAGAGACCGGCCGTAATTTA 60.472 52.381 26.12 0.00 0.00 1.40
157 158 0.743345 GCAGAGACCGGCCGTAATTT 60.743 55.000 26.12 3.99 0.00 1.82
158 159 1.153429 GCAGAGACCGGCCGTAATT 60.153 57.895 26.12 6.38 0.00 1.40
159 160 2.499685 GCAGAGACCGGCCGTAAT 59.500 61.111 26.12 9.24 0.00 1.89
160 161 4.124351 CGCAGAGACCGGCCGTAA 62.124 66.667 26.12 0.00 0.00 3.18
164 165 3.665675 ATTGACGCAGAGACCGGCC 62.666 63.158 0.00 0.00 31.27 6.13
165 166 1.741770 AATTGACGCAGAGACCGGC 60.742 57.895 0.00 0.00 0.00 6.13
166 167 0.389817 TCAATTGACGCAGAGACCGG 60.390 55.000 3.38 0.00 0.00 5.28
167 168 0.716108 GTCAATTGACGCAGAGACCG 59.284 55.000 22.09 0.00 35.12 4.79
168 169 1.079503 GGTCAATTGACGCAGAGACC 58.920 55.000 27.69 11.89 45.65 3.85
169 170 1.996191 GAGGTCAATTGACGCAGAGAC 59.004 52.381 27.69 14.69 45.65 3.36
170 171 1.895798 AGAGGTCAATTGACGCAGAGA 59.104 47.619 27.69 0.00 45.65 3.10
171 172 2.376808 AGAGGTCAATTGACGCAGAG 57.623 50.000 27.69 0.00 45.65 3.35
172 173 2.839486 AAGAGGTCAATTGACGCAGA 57.161 45.000 27.69 0.00 45.65 4.26
173 174 6.662414 TTAATAAGAGGTCAATTGACGCAG 57.338 37.500 27.69 0.00 45.65 5.18
174 175 7.624360 AATTAATAAGAGGTCAATTGACGCA 57.376 32.000 27.69 13.60 45.65 5.24
175 176 8.798153 CAAAATTAATAAGAGGTCAATTGACGC 58.202 33.333 27.69 22.26 45.65 5.19
176 177 9.289303 CCAAAATTAATAAGAGGTCAATTGACG 57.711 33.333 27.69 11.09 45.65 4.35
177 178 9.087424 GCCAAAATTAATAAGAGGTCAATTGAC 57.913 33.333 27.16 27.16 44.04 3.18
178 179 8.811017 TGCCAAAATTAATAAGAGGTCAATTGA 58.189 29.630 3.38 3.38 0.00 2.57
179 180 9.603921 ATGCCAAAATTAATAAGAGGTCAATTG 57.396 29.630 0.00 0.00 0.00 2.32
183 184 9.651913 GAAAATGCCAAAATTAATAAGAGGTCA 57.348 29.630 0.00 0.00 0.00 4.02
184 185 9.875691 AGAAAATGCCAAAATTAATAAGAGGTC 57.124 29.630 0.00 0.00 0.00 3.85
185 186 9.657419 CAGAAAATGCCAAAATTAATAAGAGGT 57.343 29.630 0.00 0.00 0.00 3.85
203 204 2.420628 TCGCCAAAGTGCAGAAAATG 57.579 45.000 0.00 0.00 0.00 2.32
204 205 3.665745 AATCGCCAAAGTGCAGAAAAT 57.334 38.095 0.00 0.00 0.00 1.82
205 206 3.181482 TGAAATCGCCAAAGTGCAGAAAA 60.181 39.130 0.00 0.00 0.00 2.29
206 207 2.360483 TGAAATCGCCAAAGTGCAGAAA 59.640 40.909 0.00 0.00 0.00 2.52
207 208 1.952990 TGAAATCGCCAAAGTGCAGAA 59.047 42.857 0.00 0.00 0.00 3.02
208 209 1.536766 CTGAAATCGCCAAAGTGCAGA 59.463 47.619 0.00 0.00 0.00 4.26
209 210 1.401931 CCTGAAATCGCCAAAGTGCAG 60.402 52.381 0.00 0.00 0.00 4.41
210 211 0.597568 CCTGAAATCGCCAAAGTGCA 59.402 50.000 0.00 0.00 0.00 4.57
211 212 0.881118 TCCTGAAATCGCCAAAGTGC 59.119 50.000 0.00 0.00 0.00 4.40
212 213 2.154462 ACTCCTGAAATCGCCAAAGTG 58.846 47.619 0.00 0.00 0.00 3.16
213 214 2.568623 ACTCCTGAAATCGCCAAAGT 57.431 45.000 0.00 0.00 0.00 2.66
214 215 3.127030 GGTAACTCCTGAAATCGCCAAAG 59.873 47.826 0.00 0.00 0.00 2.77
215 216 3.078837 GGTAACTCCTGAAATCGCCAAA 58.921 45.455 0.00 0.00 0.00 3.28
216 217 2.706890 GGTAACTCCTGAAATCGCCAA 58.293 47.619 0.00 0.00 0.00 4.52
217 218 1.404986 CGGTAACTCCTGAAATCGCCA 60.405 52.381 0.00 0.00 0.00 5.69
218 219 1.287425 CGGTAACTCCTGAAATCGCC 58.713 55.000 0.00 0.00 0.00 5.54
219 220 2.005971 ACGGTAACTCCTGAAATCGC 57.994 50.000 0.00 0.00 0.00 4.58
220 221 4.049186 CCATACGGTAACTCCTGAAATCG 58.951 47.826 0.00 0.00 0.00 3.34
221 222 3.808174 GCCATACGGTAACTCCTGAAATC 59.192 47.826 0.00 0.00 33.28 2.17
222 223 3.740141 CGCCATACGGTAACTCCTGAAAT 60.740 47.826 0.00 0.00 38.44 2.17
223 224 2.417651 CGCCATACGGTAACTCCTGAAA 60.418 50.000 0.00 0.00 38.44 2.69
224 225 1.135527 CGCCATACGGTAACTCCTGAA 59.864 52.381 0.00 0.00 38.44 3.02
225 226 0.742505 CGCCATACGGTAACTCCTGA 59.257 55.000 0.00 0.00 38.44 3.86
226 227 0.874607 GCGCCATACGGTAACTCCTG 60.875 60.000 0.00 0.00 43.93 3.86
227 228 1.440476 GCGCCATACGGTAACTCCT 59.560 57.895 0.00 0.00 43.93 3.69
228 229 4.023173 GCGCCATACGGTAACTCC 57.977 61.111 0.00 0.00 43.93 3.85
249 250 2.797786 CCCGGGTGGTGAATCTAAAAA 58.202 47.619 14.18 0.00 0.00 1.94
250 251 2.500392 CCCGGGTGGTGAATCTAAAA 57.500 50.000 14.18 0.00 0.00 1.52
266 267 4.351938 TTGTCAGCGTCGGACCCG 62.352 66.667 1.91 1.31 41.35 5.28
267 268 2.737376 GTTGTCAGCGTCGGACCC 60.737 66.667 1.91 0.00 34.36 4.46
268 269 2.737376 GGTTGTCAGCGTCGGACC 60.737 66.667 1.91 0.00 34.36 4.46
269 270 2.022129 CTGGTTGTCAGCGTCGGAC 61.022 63.158 0.00 0.00 36.60 4.79
270 271 2.338620 CTGGTTGTCAGCGTCGGA 59.661 61.111 0.00 0.00 36.60 4.55
271 272 2.507110 ATCCTGGTTGTCAGCGTCGG 62.507 60.000 0.00 0.00 42.05 4.79
272 273 1.079819 ATCCTGGTTGTCAGCGTCG 60.080 57.895 0.00 0.00 42.05 5.12
273 274 1.639298 GCATCCTGGTTGTCAGCGTC 61.639 60.000 6.62 0.00 42.05 5.19
274 275 1.672356 GCATCCTGGTTGTCAGCGT 60.672 57.895 6.62 0.00 42.05 5.07
275 276 2.401766 GGCATCCTGGTTGTCAGCG 61.402 63.158 4.52 0.00 42.05 5.18
276 277 2.048603 GGGCATCCTGGTTGTCAGC 61.049 63.158 11.20 0.08 42.05 4.26
277 278 0.033796 ATGGGCATCCTGGTTGTCAG 60.034 55.000 11.20 0.00 43.00 3.51
278 279 1.294041 TATGGGCATCCTGGTTGTCA 58.706 50.000 11.20 8.14 0.00 3.58
279 280 2.233271 CATATGGGCATCCTGGTTGTC 58.767 52.381 6.62 3.79 0.00 3.18
280 281 1.133388 CCATATGGGCATCCTGGTTGT 60.133 52.381 14.52 0.00 0.00 3.32
281 282 1.624336 CCATATGGGCATCCTGGTTG 58.376 55.000 14.52 0.22 0.00 3.77
292 293 3.118298 TCACGATGATATGGCCATATGGG 60.118 47.826 37.31 25.13 34.36 4.00
293 294 4.141233 TCACGATGATATGGCCATATGG 57.859 45.455 37.31 24.98 34.36 2.74
294 295 4.753610 GGATCACGATGATATGGCCATATG 59.246 45.833 37.31 25.73 37.20 1.78
295 296 4.409901 TGGATCACGATGATATGGCCATAT 59.590 41.667 33.77 33.77 37.20 1.78
296 297 3.774216 TGGATCACGATGATATGGCCATA 59.226 43.478 27.36 27.36 37.20 2.74
297 298 2.573009 TGGATCACGATGATATGGCCAT 59.427 45.455 24.45 24.45 37.20 4.40
298 299 1.977129 TGGATCACGATGATATGGCCA 59.023 47.619 8.56 8.56 37.20 5.36
299 300 2.768253 TGGATCACGATGATATGGCC 57.232 50.000 0.00 0.00 37.20 5.36
300 301 4.256110 TGAATGGATCACGATGATATGGC 58.744 43.478 0.00 0.00 37.20 4.40
301 302 6.997239 AATGAATGGATCACGATGATATGG 57.003 37.500 0.00 0.00 41.93 2.74
306 307 9.948964 AGATAAATAATGAATGGATCACGATGA 57.051 29.630 0.00 0.00 41.93 2.92
331 332 2.489722 TCTCATCAGTCGGTTGTGAGAG 59.510 50.000 13.01 0.00 40.06 3.20
361 378 3.439476 CGTAGCTCCAACAGTGTAGTAGT 59.561 47.826 0.00 0.00 0.00 2.73
362 379 4.017380 CGTAGCTCCAACAGTGTAGTAG 57.983 50.000 0.00 0.00 0.00 2.57
452 469 3.547613 CGATTTATCTGCTGCCTTTGAGC 60.548 47.826 0.00 0.00 36.95 4.26
475 492 9.018582 GGGCTGCTTTCATTTATTCTATTCTAT 57.981 33.333 0.00 0.00 0.00 1.98
476 493 7.998383 TGGGCTGCTTTCATTTATTCTATTCTA 59.002 33.333 0.00 0.00 0.00 2.10
477 494 6.835488 TGGGCTGCTTTCATTTATTCTATTCT 59.165 34.615 0.00 0.00 0.00 2.40
478 495 6.920210 GTGGGCTGCTTTCATTTATTCTATTC 59.080 38.462 0.00 0.00 0.00 1.75
479 496 6.460123 CGTGGGCTGCTTTCATTTATTCTATT 60.460 38.462 0.00 0.00 0.00 1.73
509 526 4.382541 TCCTGCTCTGCCCGGAGA 62.383 66.667 0.73 0.00 35.52 3.71
524 542 4.459089 GTGACCCGCTCCTGCTCC 62.459 72.222 0.00 0.00 36.97 4.70
525 543 4.803426 CGTGACCCGCTCCTGCTC 62.803 72.222 0.00 0.00 36.97 4.26
527 545 4.681978 AACGTGACCCGCTCCTGC 62.682 66.667 0.00 0.00 41.42 4.85
528 546 2.738521 CAACGTGACCCGCTCCTG 60.739 66.667 0.00 0.00 41.42 3.86
529 547 3.222354 GACAACGTGACCCGCTCCT 62.222 63.158 0.00 0.00 41.42 3.69
652 675 5.560953 CAACTCTTGTTAGCTAAACCAGCAC 60.561 44.000 7.99 0.00 42.99 4.40
671 696 1.804748 CGTCCAAGCTAAACCCAACTC 59.195 52.381 0.00 0.00 0.00 3.01
777 807 2.122189 GGGAGGGAGGGATGGAGG 60.122 72.222 0.00 0.00 0.00 4.30
778 808 1.152139 GAGGGAGGGAGGGATGGAG 60.152 68.421 0.00 0.00 0.00 3.86
779 809 2.727071 GGAGGGAGGGAGGGATGGA 61.727 68.421 0.00 0.00 0.00 3.41
780 810 2.122189 GGAGGGAGGGAGGGATGG 60.122 72.222 0.00 0.00 0.00 3.51
781 811 2.122189 GGGAGGGAGGGAGGGATG 60.122 72.222 0.00 0.00 0.00 3.51
782 812 3.462501 GGGGAGGGAGGGAGGGAT 61.463 72.222 0.00 0.00 0.00 3.85
860 891 0.107945 CTGGGAGAGGCCGAGAAAAG 60.108 60.000 0.00 0.00 44.66 2.27
878 909 1.791103 GATCTGCCGAGCGAGCTACT 61.791 60.000 0.00 0.00 0.00 2.57
937 968 4.910746 CGAAGAGCAAGAAAAGAATCGA 57.089 40.909 0.00 0.00 0.00 3.59
1110 1141 0.608640 ACTCGTACTTGCCCTTGAGG 59.391 55.000 0.00 0.00 39.47 3.86
1171 1202 1.888436 TAGACGACCCAGCCTTGCAG 61.888 60.000 0.00 0.00 0.00 4.41
1304 1335 1.815003 AGCAAAGGAAAGCAAGATCCG 59.185 47.619 0.00 0.00 40.78 4.18
1305 1336 2.560105 ACAGCAAAGGAAAGCAAGATCC 59.440 45.455 0.00 0.00 35.88 3.36
1306 1337 3.572584 CACAGCAAAGGAAAGCAAGATC 58.427 45.455 0.00 0.00 0.00 2.75
1307 1338 2.288640 GCACAGCAAAGGAAAGCAAGAT 60.289 45.455 0.00 0.00 0.00 2.40
1309 1340 1.068127 AGCACAGCAAAGGAAAGCAAG 59.932 47.619 0.00 0.00 0.00 4.01
1310 1341 1.113788 AGCACAGCAAAGGAAAGCAA 58.886 45.000 0.00 0.00 0.00 3.91
1311 1342 1.067516 GAAGCACAGCAAAGGAAAGCA 59.932 47.619 0.00 0.00 0.00 3.91
1313 1344 3.655276 ATGAAGCACAGCAAAGGAAAG 57.345 42.857 0.00 0.00 0.00 2.62
1317 1349 8.483307 AATAAATAAATGAAGCACAGCAAAGG 57.517 30.769 0.00 0.00 0.00 3.11
1351 1383 2.691927 TCGCCATGAGCAGCATAATAG 58.308 47.619 0.00 0.00 44.04 1.73
1519 1570 1.549170 TCCAAGGGAAGAGAAGCGTAC 59.451 52.381 0.00 0.00 0.00 3.67
1614 1669 5.567138 CTACCCCAAATGTAGCTGAAAAG 57.433 43.478 0.00 0.00 30.23 2.27
1751 1807 6.777091 AGAGATGATGATGTTACTAGAGCAGT 59.223 38.462 0.00 0.00 41.62 4.40
1820 1876 2.158652 TGGCTCTGCTACCGTAGTCTAT 60.159 50.000 7.40 0.00 0.00 1.98
1824 1882 0.034380 TCTGGCTCTGCTACCGTAGT 60.034 55.000 7.40 0.00 0.00 2.73
2110 2547 3.602390 CGGAACATAATTAAGCACCGG 57.398 47.619 0.00 0.00 36.27 5.28
2129 2566 0.309612 CGAAACCAGGACCAAAACCG 59.690 55.000 0.00 0.00 0.00 4.44
2147 2584 3.057174 AGACTCCAAGCTTACAAGACTCG 60.057 47.826 0.00 0.00 0.00 4.18
2160 2597 2.297597 AGAACACCGAGAAGACTCCAAG 59.702 50.000 0.00 0.00 39.76 3.61
2220 2657 6.759827 GCGTCAACTTCCTATTCCAAGTATTA 59.240 38.462 0.00 0.00 32.36 0.98
2243 2680 2.215587 CACCGTGTACTATTTCATCGCG 59.784 50.000 0.00 0.00 0.00 5.87
2294 2731 4.487714 TCTTACATGTCAGATGGGGTTC 57.512 45.455 0.00 0.00 0.00 3.62
2296 2733 5.467738 TCTATCTTACATGTCAGATGGGGT 58.532 41.667 25.99 8.59 30.81 4.95
2297 2734 6.425210 TTCTATCTTACATGTCAGATGGGG 57.575 41.667 25.99 17.44 30.81 4.96
2315 2752 6.628844 GCTGTTTTGCCCTGAATCATTTCTAT 60.629 38.462 0.00 0.00 32.78 1.98
2349 2786 7.779798 ACATGTATAACTTATTCAAGCATGGGT 59.220 33.333 0.00 0.00 34.31 4.51
2418 2856 8.523658 GGAAAATACCAAAGAGAATTAAGCAGT 58.476 33.333 0.00 0.00 0.00 4.40
2799 3240 5.749596 TTTGCATATCACATTTAGGACCG 57.250 39.130 0.00 0.00 0.00 4.79
3255 3696 3.467374 AGCTAACTCTGCAGGATTAGC 57.533 47.619 33.42 33.42 46.44 3.09
3337 3778 6.405286 CCAACACACTTGTTTATCTTGTCCAA 60.405 38.462 0.00 0.00 43.89 3.53
3524 3966 5.365605 TCCTCGTTTACCATGACCAATCTAT 59.634 40.000 0.00 0.00 0.00 1.98
3525 3967 4.712829 TCCTCGTTTACCATGACCAATCTA 59.287 41.667 0.00 0.00 0.00 1.98
3608 4050 3.073503 GGGGTAACTAGTGGTGGAAAACT 59.926 47.826 0.00 0.00 0.00 2.66
3659 4296 7.444487 GTCCAACTTACCTGAAAACAGAACTAT 59.556 37.037 0.00 0.00 0.00 2.12
3880 4517 3.691342 TCGACCCAGCAACCTCCG 61.691 66.667 0.00 0.00 0.00 4.63
4037 4674 2.631428 CACTCACAAACACGCCCG 59.369 61.111 0.00 0.00 0.00 6.13
4284 7490 3.753294 ACACCGGAAGCTGATAATAGG 57.247 47.619 9.46 0.00 0.00 2.57
4423 7629 2.954316 TCGCACTTCTAAAGAATCGCA 58.046 42.857 11.70 0.89 33.36 5.10
4561 7767 6.851222 TTTTGTGTTCAAGTCTTGCAAAAA 57.149 29.167 18.58 12.38 33.34 1.94
4894 8102 6.099701 ACCAGGACACAGCATTATAGTATCAA 59.900 38.462 0.00 0.00 0.00 2.57
4989 8203 8.554490 AGTTATGGACTATTATTGGTCTGAGT 57.446 34.615 1.82 0.00 36.65 3.41
5079 8293 2.685380 AGGACAGAGGAAGGGGCG 60.685 66.667 0.00 0.00 0.00 6.13
5105 8319 1.376037 CGAAAGGGAGTGAGGTGGC 60.376 63.158 0.00 0.00 0.00 5.01
5162 8378 4.986054 ACTTGTCTTGGGGTGTGTTATA 57.014 40.909 0.00 0.00 0.00 0.98
5414 8631 2.283529 ACCACCACCTAGGCGTCAG 61.284 63.158 9.30 1.90 43.14 3.51
5459 8676 0.248843 GGAACACTGAGCAGGAGGAG 59.751 60.000 2.20 0.00 0.00 3.69
5460 8677 0.471780 TGGAACACTGAGCAGGAGGA 60.472 55.000 2.20 0.00 0.00 3.71
5461 8678 0.397941 TTGGAACACTGAGCAGGAGG 59.602 55.000 2.20 0.00 39.29 4.30
5521 8773 1.821216 AGTGTAAATTCCTGGCACCG 58.179 50.000 0.00 0.00 0.00 4.94
5554 8806 0.445436 CGCATCTGGCTTGTCTGTTC 59.555 55.000 0.00 0.00 41.67 3.18
5564 8816 1.812922 CAGTCACCTCGCATCTGGC 60.813 63.158 0.00 0.00 39.90 4.85
5641 8893 8.243426 TCAGAAAAAGACAATATGTGGTTATGC 58.757 33.333 0.00 0.00 0.00 3.14
5710 8962 7.559486 AGAATATGTTGAGAGTTATGCAGACA 58.441 34.615 5.88 0.00 0.00 3.41
5776 9044 6.933514 ATCAATAAAACAACCCCAATGACT 57.066 33.333 0.00 0.00 0.00 3.41
5808 9077 4.471904 TTGGAATCATTACTCTGCTCGT 57.528 40.909 0.00 0.00 0.00 4.18
6044 9331 5.694910 TCACGTGAAGGAGAAATAACAAGAC 59.305 40.000 17.62 0.00 0.00 3.01
6056 9343 2.166459 TGCCTCTTATCACGTGAAGGAG 59.834 50.000 29.70 27.30 0.00 3.69
6059 9346 3.997021 AGTTTGCCTCTTATCACGTGAAG 59.003 43.478 24.13 16.51 0.00 3.02
6061 9348 3.006430 TCAGTTTGCCTCTTATCACGTGA 59.994 43.478 22.48 22.48 0.00 4.35
6064 9351 2.673368 GGTCAGTTTGCCTCTTATCACG 59.327 50.000 0.00 0.00 0.00 4.35
6082 9475 4.574599 ATTTTGCTCAACTGAACAGGTC 57.425 40.909 6.76 0.00 0.00 3.85
6174 9567 8.934023 TGGAAACAACTAGTTCCTCATTTAAT 57.066 30.769 4.77 0.00 40.26 1.40
6291 9685 4.419522 AGAACGTGCAATAATTCACCAC 57.580 40.909 0.00 0.00 0.00 4.16
6304 9788 3.349488 AAGGCTAAACAAAGAACGTGC 57.651 42.857 0.00 0.00 0.00 5.34
6387 9889 7.392393 ACTTTAAACTGTGACTGTACCAACTTT 59.608 33.333 0.00 0.00 0.00 2.66
6402 9904 8.129211 GCTTCACTTGTCAATACTTTAAACTGT 58.871 33.333 0.00 0.00 0.00 3.55
6409 9911 4.580167 TGCTGCTTCACTTGTCAATACTTT 59.420 37.500 0.00 0.00 0.00 2.66
6432 9934 2.162681 GGTAAACACATCCTGCAGCTT 58.837 47.619 8.66 0.00 0.00 3.74
6469 9971 4.643463 CAGCATAATGGAGAGCAAGATCT 58.357 43.478 0.00 0.00 0.00 2.75
6478 9980 2.239402 TGTTCAGGCAGCATAATGGAGA 59.761 45.455 0.00 0.00 0.00 3.71
6486 9988 2.241160 TCATTTGTGTTCAGGCAGCAT 58.759 42.857 0.00 0.00 0.00 3.79
6555 10070 6.017440 TGCTGACAACATTAGGTTAACAGAAC 60.017 38.462 8.10 0.00 40.78 3.01
6624 10139 7.339721 AGCATTAGACTAGCACTAGAGTACAAA 59.660 37.037 11.59 0.00 36.97 2.83
6797 10312 5.950965 ATAAATGTCAAGCGTTACGAGAG 57.049 39.130 9.62 0.00 0.00 3.20
6798 10313 6.715344 AAATAAATGTCAAGCGTTACGAGA 57.285 33.333 9.62 0.00 0.00 4.04
6891 10406 2.158957 TCCGAATCCATGTAACTCTGGC 60.159 50.000 0.00 0.00 32.30 4.85
7084 10604 2.095919 ACAAACCGTATCTTTGCTTCGC 60.096 45.455 0.00 0.00 32.71 4.70
7085 10605 3.806316 ACAAACCGTATCTTTGCTTCG 57.194 42.857 0.00 0.00 32.71 3.79
7086 10606 4.634991 CGTACAAACCGTATCTTTGCTTC 58.365 43.478 0.00 0.00 32.71 3.86
7087 10607 3.120442 GCGTACAAACCGTATCTTTGCTT 60.120 43.478 0.00 0.00 32.71 3.91
7088 10608 2.414138 GCGTACAAACCGTATCTTTGCT 59.586 45.455 0.00 0.00 32.71 3.91
7215 10742 4.245660 CAATGAGTCTAGAGCCGACAAAA 58.754 43.478 0.00 0.00 33.89 2.44
7344 10921 3.064820 GTGCTTTGACCACTTCGAAAAGA 59.935 43.478 0.00 0.00 36.30 2.52
7363 10940 0.521242 CGCGAGGTTTTATGCTGTGC 60.521 55.000 0.00 0.00 0.00 4.57
7365 10942 1.519408 AACGCGAGGTTTTATGCTGT 58.481 45.000 15.93 0.00 34.41 4.40
7434 11012 0.466124 CCAAGCTCTGCTACCCCTAC 59.534 60.000 0.00 0.00 38.25 3.18
7478 11057 8.793592 GTTAAGTCATTTAATTTGGGACTGAGT 58.206 33.333 0.00 0.00 38.71 3.41
7480 11059 8.934023 AGTTAAGTCATTTAATTTGGGACTGA 57.066 30.769 0.00 0.00 38.71 3.41
7534 11113 8.293867 CGTCCCAAAATAAGTGACTCAATTTTA 58.706 33.333 14.43 2.50 31.97 1.52
7536 11115 6.294508 CCGTCCCAAAATAAGTGACTCAATTT 60.295 38.462 0.00 0.00 0.00 1.82
7537 11116 5.183140 CCGTCCCAAAATAAGTGACTCAATT 59.817 40.000 0.00 0.00 0.00 2.32
7542 11121 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
7545 11124 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
7546 11125 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
7547 11126 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
7550 11129 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
7551 11130 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
7553 11132 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
7554 11133 2.391678 GTAAATACTCCCTCCGTCCCA 58.608 52.381 0.00 0.00 0.00 4.37
7555 11134 1.690893 GGTAAATACTCCCTCCGTCCC 59.309 57.143 0.00 0.00 0.00 4.46
7556 11135 2.391678 TGGTAAATACTCCCTCCGTCC 58.608 52.381 0.00 0.00 0.00 4.79
7559 11138 4.503296 CCTCAATGGTAAATACTCCCTCCG 60.503 50.000 0.00 0.00 0.00 4.63
7561 11140 5.454897 GGTCCTCAATGGTAAATACTCCCTC 60.455 48.000 0.00 0.00 37.07 4.30
7562 11141 4.412528 GGTCCTCAATGGTAAATACTCCCT 59.587 45.833 0.00 0.00 37.07 4.20
7563 11142 4.165372 TGGTCCTCAATGGTAAATACTCCC 59.835 45.833 0.00 0.00 37.07 4.30
7564 11143 5.123936 GTGGTCCTCAATGGTAAATACTCC 58.876 45.833 0.00 0.00 37.07 3.85
7565 11144 4.809426 CGTGGTCCTCAATGGTAAATACTC 59.191 45.833 0.00 0.00 37.07 2.59
7566 11145 4.468510 TCGTGGTCCTCAATGGTAAATACT 59.531 41.667 0.00 0.00 37.07 2.12
7567 11146 4.761975 TCGTGGTCCTCAATGGTAAATAC 58.238 43.478 0.00 0.00 37.07 1.89
7568 11147 5.623956 ATCGTGGTCCTCAATGGTAAATA 57.376 39.130 0.00 0.00 37.07 1.40
7569 11148 3.992943 TCGTGGTCCTCAATGGTAAAT 57.007 42.857 0.00 0.00 37.07 1.40
7570 11149 3.992943 ATCGTGGTCCTCAATGGTAAA 57.007 42.857 0.00 0.00 37.07 2.01
7571 11150 4.028131 ACTATCGTGGTCCTCAATGGTAA 58.972 43.478 0.00 0.00 37.07 2.85
7572 11151 3.383505 CACTATCGTGGTCCTCAATGGTA 59.616 47.826 0.00 0.00 37.50 3.25
7573 11152 2.168521 CACTATCGTGGTCCTCAATGGT 59.831 50.000 0.00 0.00 37.50 3.55
7574 11153 2.826428 CACTATCGTGGTCCTCAATGG 58.174 52.381 0.00 0.00 37.50 3.16
7585 11164 0.387202 CTGGCCTCTCCACTATCGTG 59.613 60.000 3.32 0.00 40.72 4.35
7586 11165 0.757188 CCTGGCCTCTCCACTATCGT 60.757 60.000 3.32 0.00 40.72 3.73
7587 11166 0.468214 TCCTGGCCTCTCCACTATCG 60.468 60.000 3.32 0.00 40.72 2.92
7588 11167 1.691434 CTTCCTGGCCTCTCCACTATC 59.309 57.143 3.32 0.00 40.72 2.08
7589 11168 1.008938 ACTTCCTGGCCTCTCCACTAT 59.991 52.381 3.32 0.00 40.72 2.12
7590 11169 0.413832 ACTTCCTGGCCTCTCCACTA 59.586 55.000 3.32 0.00 40.72 2.74
7591 11170 0.413832 TACTTCCTGGCCTCTCCACT 59.586 55.000 3.32 0.00 40.72 4.00
7592 11171 1.276622 TTACTTCCTGGCCTCTCCAC 58.723 55.000 3.32 0.00 40.72 4.02
7593 11172 2.038863 TTTACTTCCTGGCCTCTCCA 57.961 50.000 3.32 0.00 44.18 3.86
7594 11173 2.039879 TGTTTTACTTCCTGGCCTCTCC 59.960 50.000 3.32 0.00 0.00 3.71
7595 11174 3.418684 TGTTTTACTTCCTGGCCTCTC 57.581 47.619 3.32 0.00 0.00 3.20
7634 11213 6.636705 AGGCAGTTTTCACGTGTATAGATAA 58.363 36.000 16.51 0.00 0.00 1.75
7654 11233 9.534565 GAGCTAATAATATTTATCATCGAGGCA 57.465 33.333 0.00 0.00 0.00 4.75
7666 11245 7.041098 CCGGAGTTGCAAGAGCTAATAATATTT 60.041 37.037 0.00 0.00 42.74 1.40
7667 11246 6.428159 CCGGAGTTGCAAGAGCTAATAATATT 59.572 38.462 0.00 0.00 42.74 1.28
7668 11247 5.934625 CCGGAGTTGCAAGAGCTAATAATAT 59.065 40.000 0.00 0.00 42.74 1.28
7669 11248 5.069914 TCCGGAGTTGCAAGAGCTAATAATA 59.930 40.000 0.00 0.00 42.74 0.98
7670 11249 4.130118 CCGGAGTTGCAAGAGCTAATAAT 58.870 43.478 0.00 0.00 42.74 1.28
7671 11250 3.196901 TCCGGAGTTGCAAGAGCTAATAA 59.803 43.478 0.00 0.00 42.74 1.40
7672 11251 2.764010 TCCGGAGTTGCAAGAGCTAATA 59.236 45.455 0.00 0.00 42.74 0.98
7673 11252 1.555075 TCCGGAGTTGCAAGAGCTAAT 59.445 47.619 0.00 0.00 42.74 1.73
7674 11253 0.973632 TCCGGAGTTGCAAGAGCTAA 59.026 50.000 0.00 0.00 42.74 3.09
7675 11254 0.532573 CTCCGGAGTTGCAAGAGCTA 59.467 55.000 24.04 0.00 42.74 3.32
7676 11255 1.188219 TCTCCGGAGTTGCAAGAGCT 61.188 55.000 30.17 0.00 42.74 4.09
7677 11256 1.016653 GTCTCCGGAGTTGCAAGAGC 61.017 60.000 30.17 7.49 42.57 4.09
7678 11257 0.318441 TGTCTCCGGAGTTGCAAGAG 59.682 55.000 30.17 2.47 0.00 2.85
7685 11264 1.977544 CGAGGGTGTCTCCGGAGTT 60.978 63.158 30.17 10.65 39.30 3.01
7695 11274 4.619227 CACCGCCAACGAGGGTGT 62.619 66.667 9.21 0.87 44.82 4.16
7702 11323 3.530910 AAGGAGACCACCGCCAACG 62.531 63.158 0.00 0.00 37.17 4.10
7729 11350 4.814294 GTAGTGAGGTGGCCCGCG 62.814 72.222 0.00 0.00 35.12 6.46
7783 11446 0.107643 TCACGAACCACATGCCAGAA 59.892 50.000 0.00 0.00 0.00 3.02
7814 11477 0.886563 GCCATTGAAGAGCAGCACTT 59.113 50.000 4.56 4.56 0.00 3.16
7841 11504 3.125607 CTACACGAGCCGGCCATA 58.874 61.111 26.15 7.69 0.00 2.74
7909 11573 2.275380 GGGCAAGCCGTTTGGACAT 61.275 57.895 4.80 0.00 37.26 3.06
7943 11607 0.669318 ACACAAATCGCGTCCATCGT 60.669 50.000 5.77 0.00 42.13 3.73
7947 11611 0.321210 ATCCACACAAATCGCGTCCA 60.321 50.000 5.77 0.00 0.00 4.02
7949 11613 0.373716 GGATCCACACAAATCGCGTC 59.626 55.000 6.95 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.