Multiple sequence alignment - TraesCS4D01G171300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G171300 chr4D 100.000 3902 0 0 1 3902 298107241 298111142 0.000000e+00 7206.0
1 TraesCS4D01G171300 chr4D 81.984 766 89 19 2 725 371787996 371787238 4.310000e-169 604.0
2 TraesCS4D01G171300 chr4D 94.737 38 2 0 3382 3419 61140834 61140797 4.210000e-05 60.2
3 TraesCS4D01G171300 chr4A 92.996 3027 154 28 253 3254 188636102 188633109 0.000000e+00 4362.0
4 TraesCS4D01G171300 chr4A 80.000 750 105 20 1 717 631374282 631375019 2.690000e-141 512.0
5 TraesCS4D01G171300 chr4A 83.660 306 42 5 3586 3886 703794207 703793905 8.250000e-72 281.0
6 TraesCS4D01G171300 chr4A 84.277 159 19 4 27 179 188636252 188636094 2.430000e-32 150.0
7 TraesCS4D01G171300 chr4A 97.059 34 1 0 3506 3539 594133319 594133286 1.510000e-04 58.4
8 TraesCS4D01G171300 chr4B 95.348 2558 70 9 822 3351 369484964 369487500 0.000000e+00 4019.0
9 TraesCS4D01G171300 chr4B 81.351 681 91 16 1 649 369482080 369482756 4.470000e-144 521.0
10 TraesCS4D01G171300 chr4B 92.429 317 24 0 3586 3902 369487749 369488065 1.650000e-123 453.0
11 TraesCS4D01G171300 chr4B 80.693 606 82 14 144 719 456580611 456580011 4.630000e-119 438.0
12 TraesCS4D01G171300 chr4B 86.667 225 5 9 3357 3578 369487411 369487613 3.920000e-55 226.0
13 TraesCS4D01G171300 chr4B 83.562 146 14 3 1 137 456582431 456582287 1.140000e-25 128.0
14 TraesCS4D01G171300 chr4B 100.000 28 0 0 3392 3419 193800604 193800631 7.000000e-03 52.8
15 TraesCS4D01G171300 chr7D 80.658 760 97 28 1 719 96504054 96503304 9.540000e-151 544.0
16 TraesCS4D01G171300 chr7D 100.000 28 0 0 3390 3417 175780733 175780706 7.000000e-03 52.8
17 TraesCS4D01G171300 chr2D 79.739 765 101 27 3 719 83811222 83811980 4.500000e-139 505.0
18 TraesCS4D01G171300 chr2D 84.091 440 51 9 144 570 420992421 420991988 1.310000e-109 407.0
19 TraesCS4D01G171300 chr2D 86.538 312 37 2 3596 3902 297180677 297180366 4.830000e-89 339.0
20 TraesCS4D01G171300 chr3D 79.238 761 106 30 1 722 238631384 238630637 2.110000e-132 483.0
21 TraesCS4D01G171300 chr3D 97.436 39 1 0 3501 3539 536429881 536429919 2.520000e-07 67.6
22 TraesCS4D01G171300 chr1A 81.626 615 75 22 2 588 432625399 432624795 3.530000e-130 475.0
23 TraesCS4D01G171300 chr1A 81.591 440 68 5 140 569 403041224 403040788 6.200000e-93 351.0
24 TraesCS4D01G171300 chr1A 86.262 313 37 3 3596 3902 574682485 574682797 6.250000e-88 335.0
25 TraesCS4D01G171300 chr1A 88.571 70 5 3 3472 3539 85036617 85036549 8.990000e-12 82.4
26 TraesCS4D01G171300 chr1A 91.111 45 2 2 3376 3419 580638444 580638487 4.210000e-05 60.2
27 TraesCS4D01G171300 chr7B 79.774 707 95 29 1 664 50979804 50979103 1.640000e-128 470.0
28 TraesCS4D01G171300 chr7B 100.000 28 0 0 3390 3417 650239463 650239490 7.000000e-03 52.8
29 TraesCS4D01G171300 chr2A 80.961 562 76 18 5 539 767136123 767136680 2.170000e-112 416.0
30 TraesCS4D01G171300 chr3B 80.000 570 82 12 1 547 416859381 416858821 3.650000e-105 392.0
31 TraesCS4D01G171300 chr3B 87.742 310 33 4 3596 3900 504082470 504082779 1.330000e-94 357.0
32 TraesCS4D01G171300 chr3B 100.000 31 0 0 3506 3536 367242279 367242249 1.510000e-04 58.4
33 TraesCS4D01G171300 chr5B 86.435 317 38 3 3586 3898 677161860 677161545 3.730000e-90 342.0
34 TraesCS4D01G171300 chr5B 97.143 35 1 0 3502 3536 67951349 67951383 4.210000e-05 60.2
35 TraesCS4D01G171300 chr5B 97.143 35 1 0 3506 3540 482371933 482371899 4.210000e-05 60.2
36 TraesCS4D01G171300 chr5B 100.000 28 0 0 3382 3409 671714577 671714550 7.000000e-03 52.8
37 TraesCS4D01G171300 chr5D 86.207 319 39 3 3586 3900 536544296 536543979 1.340000e-89 340.0
38 TraesCS4D01G171300 chr5D 97.368 38 1 0 3382 3419 441906568 441906531 9.050000e-07 65.8
39 TraesCS4D01G171300 chr1D 86.513 304 36 2 3604 3902 478432310 478432613 2.910000e-86 329.0
40 TraesCS4D01G171300 chr1D 89.362 47 4 1 3376 3422 246951994 246951949 1.510000e-04 58.4
41 TraesCS4D01G171300 chr3A 84.211 323 44 5 3586 3902 568243984 568244305 1.360000e-79 307.0
42 TraesCS4D01G171300 chr5A 81.868 364 54 9 361 719 229472683 229473039 2.950000e-76 296.0
43 TraesCS4D01G171300 chr5A 97.368 38 1 0 3382 3419 558300446 558300409 9.050000e-07 65.8
44 TraesCS4D01G171300 chr5A 97.143 35 0 1 3506 3539 448616864 448616830 1.510000e-04 58.4
45 TraesCS4D01G171300 chr6B 85.000 140 19 2 3 142 708726044 708726181 1.460000e-29 141.0
46 TraesCS4D01G171300 chr6B 97.059 34 1 0 3376 3409 255522279 255522246 1.510000e-04 58.4
47 TraesCS4D01G171300 chr2B 83.471 121 18 2 1517 1637 653841583 653841465 1.150000e-20 111.0
48 TraesCS4D01G171300 chr1B 86.667 75 8 2 3465 3537 586281826 586281752 8.990000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G171300 chr4D 298107241 298111142 3901 False 7206.00 7206 100.00000 1 3902 1 chr4D.!!$F1 3901
1 TraesCS4D01G171300 chr4D 371787238 371787996 758 True 604.00 604 81.98400 2 725 1 chr4D.!!$R2 723
2 TraesCS4D01G171300 chr4A 188633109 188636252 3143 True 2256.00 4362 88.63650 27 3254 2 chr4A.!!$R3 3227
3 TraesCS4D01G171300 chr4A 631374282 631375019 737 False 512.00 512 80.00000 1 717 1 chr4A.!!$F1 716
4 TraesCS4D01G171300 chr4B 369482080 369488065 5985 False 1304.75 4019 88.94875 1 3902 4 chr4B.!!$F2 3901
5 TraesCS4D01G171300 chr4B 456580011 456582431 2420 True 283.00 438 82.12750 1 719 2 chr4B.!!$R1 718
6 TraesCS4D01G171300 chr7D 96503304 96504054 750 True 544.00 544 80.65800 1 719 1 chr7D.!!$R1 718
7 TraesCS4D01G171300 chr2D 83811222 83811980 758 False 505.00 505 79.73900 3 719 1 chr2D.!!$F1 716
8 TraesCS4D01G171300 chr3D 238630637 238631384 747 True 483.00 483 79.23800 1 722 1 chr3D.!!$R1 721
9 TraesCS4D01G171300 chr1A 432624795 432625399 604 True 475.00 475 81.62600 2 588 1 chr1A.!!$R3 586
10 TraesCS4D01G171300 chr7B 50979103 50979804 701 True 470.00 470 79.77400 1 664 1 chr7B.!!$R1 663
11 TraesCS4D01G171300 chr2A 767136123 767136680 557 False 416.00 416 80.96100 5 539 1 chr2A.!!$F1 534
12 TraesCS4D01G171300 chr3B 416858821 416859381 560 True 392.00 392 80.00000 1 547 1 chr3B.!!$R2 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 2280 0.177836 ATCACGACATCAATGCCGGA 59.822 50.000 5.05 0.00 38.00 5.14 F
590 2352 0.527565 GGTGCGTGCATTGGAAGAAT 59.472 50.000 0.00 0.00 0.00 2.40 F
725 2491 0.528924 AATCGTGTCCGGATCGAACA 59.471 50.000 28.52 12.84 37.16 3.18 F
880 4709 0.753111 GGCCCCACCTGTCATCAATC 60.753 60.000 0.00 0.00 34.51 2.67 F
1245 5074 1.077501 ATGTTGTGAGGCGGATGGG 60.078 57.895 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2297 6156 0.249398 AGTTGCCTAGGTTGCCTACG 59.751 55.000 11.31 0.00 34.61 3.51 R
2453 6312 4.261578 ACCAAAGAGAAACAATGGCATG 57.738 40.909 0.00 0.00 34.45 4.06 R
2652 6511 0.250684 TATGCATGCCCGGTACCATG 60.251 55.000 16.68 17.73 41.27 3.66 R
2847 6706 6.711277 AGGTAGTCTGCTTATCACATTTTCA 58.289 36.000 0.00 0.00 0.00 2.69 R
3259 7119 2.563179 ACGTGACAACTCCATAGCTTCT 59.437 45.455 0.00 0.00 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 122 1.007336 GTGTCGGTGTAGACCTTGCG 61.007 60.000 7.56 0.00 40.58 4.85
172 1861 0.669077 GTCGCTGGAGGATATGACGT 59.331 55.000 0.00 0.00 0.00 4.34
351 2082 0.909610 GGGGAGGAGTGATGTGGACA 60.910 60.000 0.00 0.00 0.00 4.02
541 2280 0.177836 ATCACGACATCAATGCCGGA 59.822 50.000 5.05 0.00 38.00 5.14
570 2320 2.124193 CTGGGCCGGCATGAATGA 60.124 61.111 30.85 1.75 0.00 2.57
573 2335 2.124151 GGCCGGCATGAATGAGGT 60.124 61.111 30.85 0.00 32.23 3.85
582 2344 1.133598 CATGAATGAGGTGCGTGCATT 59.866 47.619 0.00 0.00 28.67 3.56
590 2352 0.527565 GGTGCGTGCATTGGAAGAAT 59.472 50.000 0.00 0.00 0.00 2.40
604 2368 1.494721 GAAGAATGCATGGGAGGGGTA 59.505 52.381 0.00 0.00 0.00 3.69
611 2375 0.620410 CATGGGAGGGGTAGGTGACA 60.620 60.000 0.00 0.00 0.00 3.58
636 2401 0.856982 TTTGTGGGATCAGGGTGGTT 59.143 50.000 0.00 0.00 0.00 3.67
652 2417 0.540454 GGTTAGAAGCGGGCTTAGGT 59.460 55.000 5.80 0.00 36.26 3.08
655 2420 1.261938 TAGAAGCGGGCTTAGGTGCA 61.262 55.000 5.80 0.00 36.26 4.57
666 2431 1.002087 CTTAGGTGCAGTCCGGACTTT 59.998 52.381 34.54 18.62 40.20 2.66
668 2433 1.070786 GGTGCAGTCCGGACTTTCA 59.929 57.895 34.54 28.83 40.20 2.69
700 2466 2.159310 CCACTTTTGTCTTCGGTTTGCA 60.159 45.455 0.00 0.00 0.00 4.08
704 2470 4.082463 ACTTTTGTCTTCGGTTTGCAAGAA 60.082 37.500 0.00 0.00 30.38 2.52
719 2485 2.161609 GCAAGAAAAATCGTGTCCGGAT 59.838 45.455 7.81 0.00 33.95 4.18
722 2488 2.094390 AGAAAAATCGTGTCCGGATCGA 60.094 45.455 27.54 27.54 37.96 3.59
725 2491 0.528924 AATCGTGTCCGGATCGAACA 59.471 50.000 28.52 12.84 37.16 3.18
727 2493 0.956902 TCGTGTCCGGATCGAACAGA 60.957 55.000 24.85 12.92 33.95 3.41
746 2525 3.057315 CAGATCGGTGTTGAATGGCTTTT 60.057 43.478 0.00 0.00 0.00 2.27
747 2526 4.155826 CAGATCGGTGTTGAATGGCTTTTA 59.844 41.667 0.00 0.00 0.00 1.52
748 2527 4.949856 AGATCGGTGTTGAATGGCTTTTAT 59.050 37.500 0.00 0.00 0.00 1.40
755 2534 4.097741 TGTTGAATGGCTTTTATGATCCGG 59.902 41.667 0.00 0.00 0.00 5.14
756 2535 4.163441 TGAATGGCTTTTATGATCCGGA 57.837 40.909 6.61 6.61 0.00 5.14
757 2536 3.882888 TGAATGGCTTTTATGATCCGGAC 59.117 43.478 6.12 0.90 0.00 4.79
758 2537 3.576078 ATGGCTTTTATGATCCGGACA 57.424 42.857 6.12 7.86 0.00 4.02
759 2538 2.917933 TGGCTTTTATGATCCGGACAG 58.082 47.619 6.12 0.00 0.00 3.51
760 2539 1.604278 GGCTTTTATGATCCGGACAGC 59.396 52.381 6.12 5.77 0.00 4.40
761 2540 2.288666 GCTTTTATGATCCGGACAGCA 58.711 47.619 6.12 6.06 0.00 4.41
762 2541 2.880890 GCTTTTATGATCCGGACAGCAT 59.119 45.455 6.12 13.79 0.00 3.79
767 2546 1.122227 TGATCCGGACAGCATGATGA 58.878 50.000 19.60 0.00 39.69 2.92
772 2551 2.433970 TCCGGACAGCATGATGATTACA 59.566 45.455 19.60 0.00 39.69 2.41
774 2553 2.222678 CGGACAGCATGATGATTACAGC 59.777 50.000 19.60 0.00 39.69 4.40
776 2555 3.628942 GGACAGCATGATGATTACAGCAA 59.371 43.478 19.60 0.00 45.44 3.91
782 2561 6.910972 CAGCATGATGATTACAGCAAGTTTAG 59.089 38.462 4.56 0.00 45.44 1.85
783 2562 6.825213 AGCATGATGATTACAGCAAGTTTAGA 59.175 34.615 0.00 0.00 45.44 2.10
785 2564 7.637229 CATGATGATTACAGCAAGTTTAGAGG 58.363 38.462 0.00 0.00 45.44 3.69
817 2597 2.039084 AGATGCAAGAGAAAACCCTCGT 59.961 45.455 0.00 0.00 38.19 4.18
878 4707 2.763215 GGCCCCACCTGTCATCAA 59.237 61.111 0.00 0.00 34.51 2.57
879 4708 1.307647 GGCCCCACCTGTCATCAAT 59.692 57.895 0.00 0.00 34.51 2.57
880 4709 0.753111 GGCCCCACCTGTCATCAATC 60.753 60.000 0.00 0.00 34.51 2.67
988 4817 4.812476 CGATCCCGCCACGAAGCA 62.812 66.667 0.00 0.00 0.00 3.91
1207 5036 1.996191 GCTCTTACACTACAGCTGTGC 59.004 52.381 29.57 16.29 38.86 4.57
1245 5074 1.077501 ATGTTGTGAGGCGGATGGG 60.078 57.895 0.00 0.00 0.00 4.00
1407 5240 2.757077 GCCAAGGCTGGGTGTAGT 59.243 61.111 10.29 0.00 43.74 2.73
1517 5353 6.309737 GCCATTAAGTTTTGCTCTGAATTCTG 59.690 38.462 7.05 6.50 0.00 3.02
1519 5355 6.959639 TTAAGTTTTGCTCTGAATTCTGGT 57.040 33.333 11.89 0.00 0.00 4.00
1582 5418 6.403866 TTCATAACTCAAAGCAAACATGGT 57.596 33.333 0.00 0.00 0.00 3.55
1688 5524 1.583404 CTTTTCTGCAACGTGTTGTGC 59.417 47.619 13.73 2.98 42.31 4.57
1721 5557 8.557864 CAATACTCAAATGAGAGACCAATCATC 58.442 37.037 16.93 0.00 44.74 2.92
1934 5793 4.809691 GCACTGGTAAGGGTAAGGTTGAAT 60.810 45.833 0.00 0.00 0.00 2.57
2021 5880 8.456471 TCTCTTGCTCATTGATTTAAGATGTTG 58.544 33.333 7.44 0.19 0.00 3.33
2027 5886 7.699812 GCTCATTGATTTAAGATGTTGTTCCTC 59.300 37.037 0.00 0.00 0.00 3.71
2047 5906 3.974912 TCTCTTTCAGCTGCTGATATCG 58.025 45.455 30.80 19.49 40.39 2.92
2453 6312 4.576873 GGCTCTTTTTCCAGGTTAGCTATC 59.423 45.833 0.00 0.00 0.00 2.08
2616 6475 8.090788 AGGTATGTTATGGTGTAAACATCTCT 57.909 34.615 4.11 1.96 43.44 3.10
2652 6511 1.383523 GCAGAGAAATGTAGGGGCAC 58.616 55.000 0.00 0.00 0.00 5.01
2847 6706 3.735237 AGGCATTACAAGATCGTCGAT 57.265 42.857 7.63 7.63 0.00 3.59
2973 6833 7.745620 TTGGGTTTGTTTGTTGTTGTATTTT 57.254 28.000 0.00 0.00 0.00 1.82
3159 7019 4.343231 TCTACGTGTTACCCCTGATGTTA 58.657 43.478 0.00 0.00 0.00 2.41
3264 7124 4.310769 ACTGTTGTCATGAGTACAGAAGC 58.689 43.478 29.92 5.85 40.24 3.86
3267 7127 6.071108 ACTGTTGTCATGAGTACAGAAGCTAT 60.071 38.462 29.92 13.47 40.24 2.97
3269 7129 5.268118 TGTCATGAGTACAGAAGCTATGG 57.732 43.478 0.00 0.00 0.00 2.74
3279 7139 2.926200 CAGAAGCTATGGAGTTGTCACG 59.074 50.000 0.00 0.00 0.00 4.35
3280 7140 2.563179 AGAAGCTATGGAGTTGTCACGT 59.437 45.455 0.00 0.00 0.00 4.49
3281 7141 3.762288 AGAAGCTATGGAGTTGTCACGTA 59.238 43.478 0.00 0.00 0.00 3.57
3282 7142 3.505464 AGCTATGGAGTTGTCACGTAC 57.495 47.619 0.00 0.00 0.00 3.67
3283 7143 3.090037 AGCTATGGAGTTGTCACGTACT 58.910 45.455 0.00 0.00 0.00 2.73
3284 7144 3.128938 AGCTATGGAGTTGTCACGTACTC 59.871 47.826 7.53 7.53 40.00 2.59
3285 7145 2.631418 ATGGAGTTGTCACGTACTCG 57.369 50.000 9.48 0.00 41.30 4.18
3286 7146 0.594602 TGGAGTTGTCACGTACTCGG 59.405 55.000 9.48 0.00 41.30 4.63
3287 7147 0.595095 GGAGTTGTCACGTACTCGGT 59.405 55.000 9.48 0.00 41.30 4.69
3288 7148 1.400759 GGAGTTGTCACGTACTCGGTC 60.401 57.143 9.48 0.00 41.30 4.79
3289 7149 1.534595 GAGTTGTCACGTACTCGGTCT 59.465 52.381 0.68 0.00 41.85 3.85
3290 7150 1.266175 AGTTGTCACGTACTCGGTCTG 59.734 52.381 0.00 0.00 41.85 3.51
3291 7151 1.002033 GTTGTCACGTACTCGGTCTGT 60.002 52.381 0.00 0.00 41.85 3.41
3292 7152 2.168326 TGTCACGTACTCGGTCTGTA 57.832 50.000 0.00 0.00 41.85 2.74
3293 7153 2.703416 TGTCACGTACTCGGTCTGTAT 58.297 47.619 0.00 0.00 41.85 2.29
3294 7154 2.674852 TGTCACGTACTCGGTCTGTATC 59.325 50.000 0.00 0.00 41.85 2.24
3295 7155 2.674852 GTCACGTACTCGGTCTGTATCA 59.325 50.000 0.00 0.00 41.85 2.15
3296 7156 3.125829 GTCACGTACTCGGTCTGTATCAA 59.874 47.826 0.00 0.00 41.85 2.57
3297 7157 3.752747 TCACGTACTCGGTCTGTATCAAA 59.247 43.478 0.00 0.00 41.85 2.69
3298 7158 3.850273 CACGTACTCGGTCTGTATCAAAC 59.150 47.826 0.00 0.00 41.85 2.93
3299 7159 3.755378 ACGTACTCGGTCTGTATCAAACT 59.245 43.478 0.00 0.00 41.85 2.66
3300 7160 4.937620 ACGTACTCGGTCTGTATCAAACTA 59.062 41.667 0.00 0.00 41.85 2.24
3301 7161 5.587844 ACGTACTCGGTCTGTATCAAACTAT 59.412 40.000 0.00 0.00 41.85 2.12
3302 7162 6.763135 ACGTACTCGGTCTGTATCAAACTATA 59.237 38.462 0.00 0.00 41.85 1.31
3303 7163 7.280876 ACGTACTCGGTCTGTATCAAACTATAA 59.719 37.037 0.00 0.00 41.85 0.98
3304 7164 7.797587 CGTACTCGGTCTGTATCAAACTATAAG 59.202 40.741 0.00 0.00 0.00 1.73
3305 7165 7.876936 ACTCGGTCTGTATCAAACTATAAGA 57.123 36.000 0.00 0.00 0.00 2.10
3306 7166 8.466617 ACTCGGTCTGTATCAAACTATAAGAT 57.533 34.615 0.00 0.00 0.00 2.40
3307 7167 8.353684 ACTCGGTCTGTATCAAACTATAAGATG 58.646 37.037 0.00 0.00 0.00 2.90
3308 7168 8.234136 TCGGTCTGTATCAAACTATAAGATGT 57.766 34.615 0.00 0.00 0.00 3.06
3309 7169 8.692710 TCGGTCTGTATCAAACTATAAGATGTT 58.307 33.333 0.00 0.00 0.00 2.71
3310 7170 9.314321 CGGTCTGTATCAAACTATAAGATGTTT 57.686 33.333 0.00 0.00 36.91 2.83
3339 7199 9.388506 ACAGTTCCATTCTATTTTGATACAGAG 57.611 33.333 0.00 0.00 0.00 3.35
3340 7200 8.834465 CAGTTCCATTCTATTTTGATACAGAGG 58.166 37.037 0.00 0.00 0.00 3.69
3341 7201 8.772250 AGTTCCATTCTATTTTGATACAGAGGA 58.228 33.333 0.00 0.00 0.00 3.71
3342 7202 9.050601 GTTCCATTCTATTTTGATACAGAGGAG 57.949 37.037 0.00 0.00 0.00 3.69
3343 7203 7.739825 TCCATTCTATTTTGATACAGAGGAGG 58.260 38.462 0.00 0.00 0.00 4.30
3344 7204 7.348274 TCCATTCTATTTTGATACAGAGGAGGT 59.652 37.037 0.00 0.00 0.00 3.85
3345 7205 8.651389 CCATTCTATTTTGATACAGAGGAGGTA 58.349 37.037 0.00 0.00 0.00 3.08
3353 7213 9.832445 TTTTGATACAGAGGAGGTAAATCATAC 57.168 33.333 0.00 0.00 0.00 2.39
3354 7214 8.547481 TTGATACAGAGGAGGTAAATCATACA 57.453 34.615 0.00 0.00 0.00 2.29
3355 7215 8.547481 TGATACAGAGGAGGTAAATCATACAA 57.453 34.615 0.00 0.00 0.00 2.41
3356 7216 8.988060 TGATACAGAGGAGGTAAATCATACAAA 58.012 33.333 0.00 0.00 0.00 2.83
3357 7217 9.832445 GATACAGAGGAGGTAAATCATACAAAA 57.168 33.333 0.00 0.00 0.00 2.44
3358 7218 9.838339 ATACAGAGGAGGTAAATCATACAAAAG 57.162 33.333 0.00 0.00 0.00 2.27
3359 7219 7.690256 ACAGAGGAGGTAAATCATACAAAAGT 58.310 34.615 0.00 0.00 0.00 2.66
3360 7220 8.164070 ACAGAGGAGGTAAATCATACAAAAGTT 58.836 33.333 0.00 0.00 0.00 2.66
3361 7221 9.667107 CAGAGGAGGTAAATCATACAAAAGTTA 57.333 33.333 0.00 0.00 0.00 2.24
3382 7242 7.655490 AGTTAATTAGTTGTCACGTACTCACT 58.345 34.615 0.00 0.00 0.00 3.41
3477 7338 5.258051 TGTTTCCTGGTCAAGTTTGTACTT 58.742 37.500 0.00 0.00 45.40 2.24
3478 7339 5.355910 TGTTTCCTGGTCAAGTTTGTACTTC 59.644 40.000 0.00 0.00 42.67 3.01
3479 7340 4.081322 TCCTGGTCAAGTTTGTACTTCC 57.919 45.455 0.00 0.00 42.67 3.46
3480 7341 3.714798 TCCTGGTCAAGTTTGTACTTCCT 59.285 43.478 0.00 0.00 42.67 3.36
3496 7357 6.889722 TGTACTTCCTTCATCCCAAAATAAGG 59.110 38.462 0.00 0.00 38.44 2.69
3497 7358 5.903923 ACTTCCTTCATCCCAAAATAAGGT 58.096 37.500 0.00 0.00 38.29 3.50
3498 7359 5.952347 ACTTCCTTCATCCCAAAATAAGGTC 59.048 40.000 0.00 0.00 38.29 3.85
3499 7360 5.796502 TCCTTCATCCCAAAATAAGGTCT 57.203 39.130 0.00 0.00 38.29 3.85
3500 7361 5.755849 TCCTTCATCCCAAAATAAGGTCTC 58.244 41.667 0.00 0.00 38.29 3.36
3501 7362 5.252863 TCCTTCATCCCAAAATAAGGTCTCA 59.747 40.000 0.00 0.00 38.29 3.27
3502 7363 5.951747 CCTTCATCCCAAAATAAGGTCTCAA 59.048 40.000 0.00 0.00 33.50 3.02
3503 7364 6.127619 CCTTCATCCCAAAATAAGGTCTCAAC 60.128 42.308 0.00 0.00 33.50 3.18
3504 7365 6.139679 TCATCCCAAAATAAGGTCTCAACT 57.860 37.500 0.00 0.00 0.00 3.16
3505 7366 6.552008 TCATCCCAAAATAAGGTCTCAACTT 58.448 36.000 0.00 0.00 0.00 2.66
3506 7367 7.010160 TCATCCCAAAATAAGGTCTCAACTTT 58.990 34.615 0.00 0.00 0.00 2.66
3507 7368 6.648879 TCCCAAAATAAGGTCTCAACTTTG 57.351 37.500 0.00 0.00 0.00 2.77
3508 7369 6.369629 TCCCAAAATAAGGTCTCAACTTTGA 58.630 36.000 0.00 0.00 35.57 2.69
3526 7387 6.126409 ACTTTGAGACACTTATTTTGGGACA 58.874 36.000 0.00 0.00 0.00 4.02
3529 7390 6.126863 TGAGACACTTATTTTGGGACAGAT 57.873 37.500 0.00 0.00 42.39 2.90
3593 7583 6.978674 ATTTAGTAGTAGCAGTGCTATGGA 57.021 37.500 26.87 12.91 43.30 3.41
3594 7584 6.978674 TTTAGTAGTAGCAGTGCTATGGAT 57.021 37.500 26.87 15.89 43.30 3.41
3602 7592 4.840680 TAGCAGTGCTATGGATTATCCACT 59.159 41.667 21.00 8.81 44.32 4.00
3603 7593 6.016555 TAGCAGTGCTATGGATTATCCACTA 58.983 40.000 21.00 7.84 44.32 2.74
3626 7616 5.142061 TGTTATCTCTAACAGCCGTCAAA 57.858 39.130 0.00 0.00 41.73 2.69
3637 7627 1.134936 AGCCGTCAAACACAAAAACCC 60.135 47.619 0.00 0.00 0.00 4.11
3666 7656 3.627577 GCGATGCATCTTCCCTTTTTCTA 59.372 43.478 23.73 0.00 0.00 2.10
3670 7660 4.199310 TGCATCTTCCCTTTTTCTATCGG 58.801 43.478 0.00 0.00 0.00 4.18
3676 7666 5.722923 TCTTCCCTTTTTCTATCGGAACCTA 59.277 40.000 0.00 0.00 33.13 3.08
3688 7678 1.521141 GAACCTACCCTTCCCGCTC 59.479 63.158 0.00 0.00 0.00 5.03
3723 7713 1.002366 CGGGACATTTCTCGCTTGAG 58.998 55.000 0.00 0.00 39.37 3.02
3731 7721 1.328279 TTCTCGCTTGAGTCACCTCA 58.672 50.000 0.00 0.00 45.95 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 1824 4.180946 CAGCGACGAGGAGGACCG 62.181 72.222 0.00 0.00 41.83 4.79
172 1861 2.257371 CTTGACGCGGACGGAGAA 59.743 61.111 12.47 0.00 46.04 2.87
239 1928 2.711922 GGATCTGGTGGCTCGTCGT 61.712 63.158 0.00 0.00 0.00 4.34
241 1930 2.501610 GGGATCTGGTGGCTCGTC 59.498 66.667 0.00 0.00 0.00 4.20
249 1938 3.782443 GCGGTTCCGGGATCTGGT 61.782 66.667 14.28 0.00 0.00 4.00
366 2097 0.889186 CCTGGCCGCGGCTATTTAAT 60.889 55.000 45.23 0.00 41.60 1.40
541 2280 2.586792 GCCCAGAGCATTCGGAGT 59.413 61.111 0.00 0.00 42.97 3.85
547 2286 4.133373 ATGCCGGCCCAGAGCATT 62.133 61.111 26.77 0.00 44.61 3.56
570 2320 0.537143 TTCTTCCAATGCACGCACCT 60.537 50.000 0.00 0.00 0.00 4.00
582 2344 0.259647 CCCTCCCATGCATTCTTCCA 59.740 55.000 0.00 0.00 0.00 3.53
590 2352 2.000701 CACCTACCCCTCCCATGCA 61.001 63.158 0.00 0.00 0.00 3.96
593 2356 0.326618 CTGTCACCTACCCCTCCCAT 60.327 60.000 0.00 0.00 0.00 4.00
619 2383 1.203376 TCTAACCACCCTGATCCCACA 60.203 52.381 0.00 0.00 0.00 4.17
625 2389 0.541863 CCGCTTCTAACCACCCTGAT 59.458 55.000 0.00 0.00 0.00 2.90
636 2401 1.261938 TGCACCTAAGCCCGCTTCTA 61.262 55.000 4.96 0.00 37.47 2.10
652 2417 3.334691 CTTTATGAAAGTCCGGACTGCA 58.665 45.455 36.87 33.37 41.58 4.41
655 2420 3.369576 GGAGCTTTATGAAAGTCCGGACT 60.370 47.826 31.69 31.69 44.94 3.85
666 2431 3.181423 ACAAAAGTGGGGGAGCTTTATGA 60.181 43.478 0.00 0.00 34.26 2.15
668 2433 3.076032 AGACAAAAGTGGGGGAGCTTTAT 59.924 43.478 0.00 0.00 34.26 1.40
700 2466 2.671396 CGATCCGGACACGATTTTTCTT 59.329 45.455 22.86 0.00 44.60 2.52
704 2470 1.997606 GTTCGATCCGGACACGATTTT 59.002 47.619 27.68 3.07 44.60 1.82
722 2488 1.812571 GCCATTCAACACCGATCTGTT 59.187 47.619 0.00 0.00 34.56 3.16
725 2491 2.496899 AAGCCATTCAACACCGATCT 57.503 45.000 0.00 0.00 0.00 2.75
727 2493 4.704540 TCATAAAAGCCATTCAACACCGAT 59.295 37.500 0.00 0.00 0.00 4.18
731 2509 5.036737 CGGATCATAAAAGCCATTCAACAC 58.963 41.667 0.00 0.00 0.00 3.32
737 2516 3.885297 CTGTCCGGATCATAAAAGCCATT 59.115 43.478 7.81 0.00 0.00 3.16
746 2525 2.899256 TCATCATGCTGTCCGGATCATA 59.101 45.455 7.81 0.00 0.00 2.15
747 2526 1.695788 TCATCATGCTGTCCGGATCAT 59.304 47.619 7.81 9.24 0.00 2.45
748 2527 1.122227 TCATCATGCTGTCCGGATCA 58.878 50.000 7.81 6.98 0.00 2.92
755 2534 4.334759 ACTTGCTGTAATCATCATGCTGTC 59.665 41.667 0.00 0.00 0.00 3.51
756 2535 4.267536 ACTTGCTGTAATCATCATGCTGT 58.732 39.130 0.00 0.00 0.00 4.40
757 2536 4.895224 ACTTGCTGTAATCATCATGCTG 57.105 40.909 0.00 0.00 0.00 4.41
758 2537 5.909621 AAACTTGCTGTAATCATCATGCT 57.090 34.783 0.00 0.00 0.00 3.79
759 2538 7.019774 TCTAAACTTGCTGTAATCATCATGC 57.980 36.000 0.00 0.00 0.00 4.06
760 2539 7.637229 CCTCTAAACTTGCTGTAATCATCATG 58.363 38.462 0.00 0.00 0.00 3.07
761 2540 6.261826 GCCTCTAAACTTGCTGTAATCATCAT 59.738 38.462 0.00 0.00 0.00 2.45
762 2541 5.586243 GCCTCTAAACTTGCTGTAATCATCA 59.414 40.000 0.00 0.00 0.00 3.07
767 2546 3.621558 GGGCCTCTAAACTTGCTGTAAT 58.378 45.455 0.84 0.00 0.00 1.89
772 2551 1.377333 GCGGGCCTCTAAACTTGCT 60.377 57.895 0.84 0.00 0.00 3.91
774 2553 1.299976 AGGCGGGCCTCTAAACTTG 59.700 57.895 6.34 0.00 44.43 3.16
785 2564 4.802051 TGCATCTCCAAGGCGGGC 62.802 66.667 0.00 0.00 34.36 6.13
797 2576 2.427506 ACGAGGGTTTTCTCTTGCATC 58.572 47.619 0.00 0.00 35.23 3.91
843 4671 0.168128 CCGCCACTTCATTTTCGACC 59.832 55.000 0.00 0.00 0.00 4.79
988 4817 2.273449 CTCCATGGCGAGCCCTTT 59.727 61.111 6.96 0.00 34.56 3.11
1125 4954 2.500504 GGGGGTAGAAGAGTAGTGGTTG 59.499 54.545 0.00 0.00 0.00 3.77
1207 5036 0.634731 CCAATTCGCGTTTGCAATCG 59.365 50.000 22.41 22.41 42.97 3.34
1245 5074 2.559785 CCAGTGACAATCTGGCCAC 58.440 57.895 0.00 0.00 44.46 5.01
1407 5240 7.014326 ACACAATCTGAACTACAGTCTACAGAA 59.986 37.037 13.62 3.77 45.86 3.02
1465 5298 5.055642 TCTCAATTACCTGTGTACACTCG 57.944 43.478 25.60 17.32 0.00 4.18
1519 5355 5.945191 TGGTGATTGAGTTGATAAGCATCAA 59.055 36.000 0.00 0.00 46.56 2.57
1582 5418 3.778075 AGTATGTACAGGTGGCCAACATA 59.222 43.478 25.90 21.73 33.15 2.29
1688 5524 9.906660 GGTCTCTCATTTGAGTATTGATACTAG 57.093 37.037 7.42 0.00 43.27 2.57
1739 5575 2.288961 TAGCTACCGCTTTGCAGTAC 57.711 50.000 0.00 0.00 46.47 2.73
1832 5668 8.021396 GTGTACCAGAAATTCAGATTACAAACC 58.979 37.037 0.00 0.00 0.00 3.27
1934 5793 7.175990 GGGAAAAATCATACCGCTGGATATTAA 59.824 37.037 1.50 0.00 0.00 1.40
2021 5880 2.075338 CAGCAGCTGAAAGAGAGGAAC 58.925 52.381 20.43 0.00 34.07 3.62
2027 5886 3.715495 ACGATATCAGCAGCTGAAAGAG 58.285 45.455 28.78 20.90 44.04 2.85
2047 5906 4.689345 AGCACGTTTACACTTCCATAAGAC 59.311 41.667 0.00 0.00 36.50 3.01
2279 6138 6.864685 TGCCTACGATAATTAACCGATAACAG 59.135 38.462 14.81 6.11 0.00 3.16
2297 6156 0.249398 AGTTGCCTAGGTTGCCTACG 59.751 55.000 11.31 0.00 34.61 3.51
2453 6312 4.261578 ACCAAAGAGAAACAATGGCATG 57.738 40.909 0.00 0.00 34.45 4.06
2616 6475 2.023673 CTGCCTGTGTGGACTCAAAAA 58.976 47.619 0.00 0.00 38.35 1.94
2652 6511 0.250684 TATGCATGCCCGGTACCATG 60.251 55.000 16.68 17.73 41.27 3.66
2847 6706 6.711277 AGGTAGTCTGCTTATCACATTTTCA 58.289 36.000 0.00 0.00 0.00 2.69
3259 7119 2.563179 ACGTGACAACTCCATAGCTTCT 59.437 45.455 0.00 0.00 0.00 2.85
3264 7124 3.487042 CCGAGTACGTGACAACTCCATAG 60.487 52.174 9.94 0.00 39.16 2.23
3267 7127 0.594602 CCGAGTACGTGACAACTCCA 59.405 55.000 9.94 0.00 39.16 3.86
3269 7129 1.534595 AGACCGAGTACGTGACAACTC 59.465 52.381 0.00 1.66 39.00 3.01
3279 7139 8.834465 TCTTATAGTTTGATACAGACCGAGTAC 58.166 37.037 0.00 0.00 0.00 2.73
3280 7140 8.969260 TCTTATAGTTTGATACAGACCGAGTA 57.031 34.615 0.00 0.00 0.00 2.59
3281 7141 7.876936 TCTTATAGTTTGATACAGACCGAGT 57.123 36.000 0.00 0.00 0.00 4.18
3282 7142 8.353684 ACATCTTATAGTTTGATACAGACCGAG 58.646 37.037 0.00 0.00 0.00 4.63
3283 7143 8.234136 ACATCTTATAGTTTGATACAGACCGA 57.766 34.615 0.00 0.00 0.00 4.69
3284 7144 8.873215 AACATCTTATAGTTTGATACAGACCG 57.127 34.615 0.00 0.00 0.00 4.79
3313 7173 9.388506 CTCTGTATCAAAATAGAATGGAACTGT 57.611 33.333 0.00 0.00 0.00 3.55
3314 7174 8.834465 CCTCTGTATCAAAATAGAATGGAACTG 58.166 37.037 0.00 0.00 0.00 3.16
3315 7175 8.772250 TCCTCTGTATCAAAATAGAATGGAACT 58.228 33.333 0.00 0.00 0.00 3.01
3316 7176 8.964476 TCCTCTGTATCAAAATAGAATGGAAC 57.036 34.615 0.00 0.00 0.00 3.62
3317 7177 8.213679 CCTCCTCTGTATCAAAATAGAATGGAA 58.786 37.037 0.00 0.00 0.00 3.53
3318 7178 7.348274 ACCTCCTCTGTATCAAAATAGAATGGA 59.652 37.037 0.00 0.00 0.00 3.41
3319 7179 7.512992 ACCTCCTCTGTATCAAAATAGAATGG 58.487 38.462 0.00 0.00 0.00 3.16
3327 7187 9.832445 GTATGATTTACCTCCTCTGTATCAAAA 57.168 33.333 0.00 0.00 0.00 2.44
3328 7188 8.988060 TGTATGATTTACCTCCTCTGTATCAAA 58.012 33.333 0.00 0.00 0.00 2.69
3329 7189 8.547481 TGTATGATTTACCTCCTCTGTATCAA 57.453 34.615 0.00 0.00 0.00 2.57
3330 7190 8.547481 TTGTATGATTTACCTCCTCTGTATCA 57.453 34.615 0.00 0.00 0.00 2.15
3331 7191 9.832445 TTTTGTATGATTTACCTCCTCTGTATC 57.168 33.333 0.00 0.00 0.00 2.24
3332 7192 9.838339 CTTTTGTATGATTTACCTCCTCTGTAT 57.162 33.333 0.00 0.00 0.00 2.29
3333 7193 8.822805 ACTTTTGTATGATTTACCTCCTCTGTA 58.177 33.333 0.00 0.00 0.00 2.74
3334 7194 7.690256 ACTTTTGTATGATTTACCTCCTCTGT 58.310 34.615 0.00 0.00 0.00 3.41
3335 7195 8.567285 AACTTTTGTATGATTTACCTCCTCTG 57.433 34.615 0.00 0.00 0.00 3.35
3349 7209 9.872757 ACGTGACAACTAATTAACTTTTGTATG 57.127 29.630 0.00 0.00 30.60 2.39
3352 7212 9.101655 AGTACGTGACAACTAATTAACTTTTGT 57.898 29.630 0.00 0.00 33.12 2.83
3353 7213 9.577003 GAGTACGTGACAACTAATTAACTTTTG 57.423 33.333 0.00 0.00 0.00 2.44
3354 7214 9.316730 TGAGTACGTGACAACTAATTAACTTTT 57.683 29.630 0.00 0.00 0.00 2.27
3355 7215 8.758715 GTGAGTACGTGACAACTAATTAACTTT 58.241 33.333 0.00 0.00 0.00 2.66
3356 7216 8.139989 AGTGAGTACGTGACAACTAATTAACTT 58.860 33.333 0.00 0.00 0.00 2.66
3357 7217 7.655490 AGTGAGTACGTGACAACTAATTAACT 58.345 34.615 0.00 0.00 0.00 2.24
3358 7218 7.806960 AGAGTGAGTACGTGACAACTAATTAAC 59.193 37.037 0.00 0.00 29.82 2.01
3359 7219 7.806487 CAGAGTGAGTACGTGACAACTAATTAA 59.194 37.037 0.00 0.00 29.82 1.40
3360 7220 7.040892 ACAGAGTGAGTACGTGACAACTAATTA 60.041 37.037 0.00 0.00 29.82 1.40
3361 7221 6.150318 CAGAGTGAGTACGTGACAACTAATT 58.850 40.000 0.00 0.00 29.82 1.40
3362 7222 5.241064 ACAGAGTGAGTACGTGACAACTAAT 59.759 40.000 0.00 0.00 29.82 1.73
3363 7223 4.577693 ACAGAGTGAGTACGTGACAACTAA 59.422 41.667 0.00 0.00 29.82 2.24
3364 7224 4.132336 ACAGAGTGAGTACGTGACAACTA 58.868 43.478 0.00 0.00 29.82 2.24
3365 7225 2.950309 ACAGAGTGAGTACGTGACAACT 59.050 45.455 0.00 0.00 31.73 3.16
3366 7226 3.351020 ACAGAGTGAGTACGTGACAAC 57.649 47.619 0.00 0.00 0.00 3.32
3367 7227 4.758165 TGATACAGAGTGAGTACGTGACAA 59.242 41.667 0.00 0.00 0.00 3.18
3368 7228 4.320870 TGATACAGAGTGAGTACGTGACA 58.679 43.478 0.00 0.00 0.00 3.58
3369 7229 4.941325 TGATACAGAGTGAGTACGTGAC 57.059 45.455 0.00 0.00 0.00 3.67
3370 7230 5.952526 TTTGATACAGAGTGAGTACGTGA 57.047 39.130 0.00 0.00 0.00 4.35
3371 7231 8.858003 ATATTTTGATACAGAGTGAGTACGTG 57.142 34.615 0.00 0.00 0.00 4.49
3435 7295 6.486993 GGAAACAGGTCTGAGTGATTTACTTT 59.513 38.462 4.84 0.00 40.53 2.66
3477 7338 5.252863 TGAGACCTTATTTTGGGATGAAGGA 59.747 40.000 5.99 0.00 39.26 3.36
3478 7339 5.509498 TGAGACCTTATTTTGGGATGAAGG 58.491 41.667 0.00 0.00 42.05 3.46
3479 7340 6.660949 AGTTGAGACCTTATTTTGGGATGAAG 59.339 38.462 0.00 0.00 0.00 3.02
3480 7341 6.552008 AGTTGAGACCTTATTTTGGGATGAA 58.448 36.000 0.00 0.00 0.00 2.57
3499 7360 6.831353 TCCCAAAATAAGTGTCTCAAAGTTGA 59.169 34.615 0.00 0.00 35.57 3.18
3500 7361 6.918022 GTCCCAAAATAAGTGTCTCAAAGTTG 59.082 38.462 0.00 0.00 0.00 3.16
3501 7362 6.605594 TGTCCCAAAATAAGTGTCTCAAAGTT 59.394 34.615 0.00 0.00 0.00 2.66
3502 7363 6.126409 TGTCCCAAAATAAGTGTCTCAAAGT 58.874 36.000 0.00 0.00 0.00 2.66
3503 7364 6.486657 TCTGTCCCAAAATAAGTGTCTCAAAG 59.513 38.462 0.00 0.00 0.00 2.77
3504 7365 6.361433 TCTGTCCCAAAATAAGTGTCTCAAA 58.639 36.000 0.00 0.00 0.00 2.69
3505 7366 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
3506 7367 5.560722 TCTGTCCCAAAATAAGTGTCTCA 57.439 39.130 0.00 0.00 0.00 3.27
3507 7368 5.355350 CCATCTGTCCCAAAATAAGTGTCTC 59.645 44.000 0.00 0.00 0.00 3.36
3508 7369 5.014123 TCCATCTGTCCCAAAATAAGTGTCT 59.986 40.000 0.00 0.00 0.00 3.41
3509 7370 5.253330 TCCATCTGTCCCAAAATAAGTGTC 58.747 41.667 0.00 0.00 0.00 3.67
3510 7371 5.222130 ACTCCATCTGTCCCAAAATAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
3511 7372 5.256474 ACTCCATCTGTCCCAAAATAAGTG 58.744 41.667 0.00 0.00 0.00 3.16
3512 7373 5.520748 ACTCCATCTGTCCCAAAATAAGT 57.479 39.130 0.00 0.00 0.00 2.24
3526 7387 6.656693 GCCAGTTGCAATTATATACTCCATCT 59.343 38.462 0.59 0.00 40.77 2.90
3578 7440 5.152623 TGGATAATCCATAGCACTGCTAC 57.847 43.478 13.08 0.00 42.67 3.58
3594 7584 8.585881 GGCTGTTAGAGATAACATAGTGGATAA 58.414 37.037 1.62 0.00 39.00 1.75
3602 7592 6.459670 TTGACGGCTGTTAGAGATAACATA 57.540 37.500 0.00 0.00 39.00 2.29
3603 7593 5.339008 TTGACGGCTGTTAGAGATAACAT 57.661 39.130 0.00 0.00 39.00 2.71
3616 7606 1.923864 GGTTTTTGTGTTTGACGGCTG 59.076 47.619 0.00 0.00 0.00 4.85
3624 7614 1.414550 CGGGATGGGGTTTTTGTGTTT 59.585 47.619 0.00 0.00 0.00 2.83
3626 7616 1.468506 GCGGGATGGGGTTTTTGTGT 61.469 55.000 0.00 0.00 0.00 3.72
3666 7656 1.047034 CGGGAAGGGTAGGTTCCGAT 61.047 60.000 0.00 0.00 44.01 4.18
3670 7660 1.521141 GAGCGGGAAGGGTAGGTTC 59.479 63.158 0.00 0.00 0.00 3.62
3676 7666 3.246880 AAACCGAGCGGGAAGGGT 61.247 61.111 14.07 0.00 39.97 4.34
3698 7688 1.409412 CGAGAAATGTCCCGCTATCG 58.591 55.000 0.00 0.00 0.00 2.92
3699 7689 1.140816 GCGAGAAATGTCCCGCTATC 58.859 55.000 4.28 0.00 43.75 2.08
3704 7694 1.002366 CTCAAGCGAGAAATGTCCCG 58.998 55.000 0.00 0.00 42.34 5.14
3709 7699 2.693069 AGGTGACTCAAGCGAGAAATG 58.307 47.619 0.00 0.00 42.34 2.32
3723 7713 6.612306 GTCATCTGGTTTTAAATGAGGTGAC 58.388 40.000 14.44 14.44 37.56 3.67
3731 7721 4.457949 GGTGGACGTCATCTGGTTTTAAAT 59.542 41.667 18.91 0.00 0.00 1.40
3864 7854 3.337358 GTTGAATGGCCCTTTGGAAATG 58.663 45.455 0.00 0.00 0.00 2.32
3868 7858 0.486879 AGGTTGAATGGCCCTTTGGA 59.513 50.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.