Multiple sequence alignment - TraesCS4D01G171200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G171200 chr4D 100.000 9566 0 0 1 9566 297937037 297927472 0.000000e+00 17666.0
1 TraesCS4D01G171200 chr4D 100.000 100 0 0 9283 9382 297927657 297927558 1.640000e-42 185.0
2 TraesCS4D01G171200 chr4D 100.000 100 0 0 9381 9480 297927755 297927656 1.640000e-42 185.0
3 TraesCS4D01G171200 chr4B 93.209 6126 197 74 657 6685 369286580 369280577 0.000000e+00 8805.0
4 TraesCS4D01G171200 chr4B 95.308 1300 59 2 6681 7979 369280423 369279125 0.000000e+00 2061.0
5 TraesCS4D01G171200 chr4B 89.808 834 46 17 8060 8875 369279129 369278317 0.000000e+00 1033.0
6 TraesCS4D01G171200 chr4B 90.924 617 22 12 1 607 369287545 369286953 0.000000e+00 798.0
7 TraesCS4D01G171200 chr4B 80.193 414 53 15 8991 9382 369278295 369277889 5.660000e-72 283.0
8 TraesCS4D01G171200 chr4A 95.914 4674 146 18 3320 7979 189602258 189606900 0.000000e+00 7531.0
9 TraesCS4D01G171200 chr4A 93.695 2030 73 19 1331 3324 189600169 189602179 0.000000e+00 2988.0
10 TraesCS4D01G171200 chr4A 89.862 799 28 19 1 777 189598562 189599329 0.000000e+00 977.0
11 TraesCS4D01G171200 chr4A 88.727 825 50 22 8060 8875 189606896 189607686 0.000000e+00 968.0
12 TraesCS4D01G171200 chr3B 92.553 94 5 2 7974 8066 6673806 6673714 6.030000e-27 134.0
13 TraesCS4D01G171200 chr5A 94.253 87 4 1 7978 8063 53261291 53261205 2.170000e-26 132.0
14 TraesCS4D01G171200 chr5A 88.542 96 11 0 6323 6418 708620028 708620123 6.070000e-22 117.0
15 TraesCS4D01G171200 chr3D 92.473 93 5 2 7973 8064 184367607 184367698 2.170000e-26 132.0
16 TraesCS4D01G171200 chrUn 90.816 98 7 2 7972 8068 135090808 135090712 7.800000e-26 130.0
17 TraesCS4D01G171200 chrUn 90.816 98 7 2 7972 8068 152687664 152687568 7.800000e-26 130.0
18 TraesCS4D01G171200 chr5D 93.258 89 5 1 7978 8065 446767170 446767258 7.800000e-26 130.0
19 TraesCS4D01G171200 chr5D 84.906 106 16 0 6335 6440 548522651 548522546 3.650000e-19 108.0
20 TraesCS4D01G171200 chr2B 91.579 95 7 1 7975 8068 260607219 260607313 7.800000e-26 130.0
21 TraesCS4D01G171200 chr2B 92.308 65 5 0 6349 6413 39409873 39409937 1.020000e-14 93.5
22 TraesCS4D01G171200 chr7D 89.796 98 8 2 7968 8064 181911908 181912004 3.630000e-24 124.0
23 TraesCS4D01G171200 chr2D 89.109 101 8 3 7978 8075 62036141 62036041 1.300000e-23 122.0
24 TraesCS4D01G171200 chr6D 85.567 97 14 0 6323 6419 82698385 82698289 1.700000e-17 102.0
25 TraesCS4D01G171200 chr6A 78.571 126 24 2 6294 6419 99506082 99505960 7.960000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G171200 chr4D 297927472 297937037 9565 True 17666 17666 100.0000 1 9566 1 chr4D.!!$R1 9565
1 TraesCS4D01G171200 chr4B 369277889 369287545 9656 True 2596 8805 89.8884 1 9382 5 chr4B.!!$R1 9381
2 TraesCS4D01G171200 chr4A 189598562 189607686 9124 False 3116 7531 92.0495 1 8875 4 chr4A.!!$F1 8874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 1235 0.036010 CGCAGAGGGTTGGTTCATCT 60.036 55.000 0.00 0.0 0.00 2.90 F
876 1242 0.245539 GGTTGGTTCATCTCGTCGGA 59.754 55.000 0.00 0.0 0.00 4.55 F
887 1253 0.454620 CTCGTCGGACTCGGAAACTG 60.455 60.000 6.57 0.0 36.95 3.16 F
1014 1389 0.550914 ATAAGCAAGCGATTCCCCCA 59.449 50.000 0.00 0.0 0.00 4.96 F
2875 3588 0.778720 TAGCTAGGAGGGGACTAGGC 59.221 60.000 0.00 0.0 44.43 3.93 F
3439 4237 1.208706 TATGCATTCTCCGGTTCCCA 58.791 50.000 3.54 0.0 0.00 4.37 F
3472 4270 1.428869 GCATCCTCTGGATACCACCT 58.571 55.000 0.00 0.0 40.98 4.00 F
4699 5507 0.042881 GGTCCCCTGGAGGTAAGTCT 59.957 60.000 0.00 0.0 29.39 3.24 F
4878 5686 2.530460 ATGGCCCTGTTGCTTTATCA 57.470 45.000 0.00 0.0 0.00 2.15 F
5616 6424 1.928503 CCATGTTGGCGCATTTCATTC 59.071 47.619 10.83 0.0 0.00 2.67 F
6983 7953 1.303236 CAACCAGGCCACGATTCCA 60.303 57.895 5.01 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2737 0.322277 CCTCTGCAAGCTGTGATGGT 60.322 55.000 0.00 0.0 0.00 3.55 R
2125 2835 0.663153 GGAACATACAGATTGCGGCC 59.337 55.000 0.00 0.0 0.00 6.13 R
2852 3565 3.076182 CCTAGTCCCCTCCTAGCTATTCA 59.924 52.174 0.00 0.0 32.29 2.57 R
2931 3644 3.256704 AGATTCTTTGGTGGGAGGTGTA 58.743 45.455 0.00 0.0 0.00 2.90 R
4295 5103 0.322975 GCTCAAGGAAGGAGACTGCA 59.677 55.000 0.00 0.0 42.68 4.41 R
4360 5168 0.949397 CTGAAGCAGAACAGCAAGCA 59.051 50.000 0.00 0.0 36.85 3.91 R
5048 5856 1.888512 TGGAGGTGCAGATGCTTTTTC 59.111 47.619 6.35 0.0 42.66 2.29 R
5616 6424 1.301293 GGACCAAGGAAGGGCTGAG 59.699 63.158 0.00 0.0 36.69 3.35 R
6130 6938 3.134804 CCCCTGATAGATCCGACAAGTTT 59.865 47.826 0.00 0.0 0.00 2.66 R
7052 8022 0.817013 CACCAATTCCCAATGACCGG 59.183 55.000 0.00 0.0 0.00 5.28 R
8894 9886 0.249868 TGCGGTCAACAGAGACTTGG 60.250 55.000 0.00 0.0 38.57 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 0.461516 AGTGCATCATGGCGTGAGAG 60.462 55.000 15.57 11.03 40.92 3.20
160 161 0.396278 GCTTCTCTGGGGATTTGGGG 60.396 60.000 0.00 0.00 0.00 4.96
172 173 1.815817 ATTTGGGGAACGCTTGTGCC 61.816 55.000 0.00 0.00 43.80 5.01
206 213 1.002468 CGGGAGCTTTCTGTTTGTGTG 60.002 52.381 0.00 0.00 0.00 3.82
207 214 1.338020 GGGAGCTTTCTGTTTGTGTGG 59.662 52.381 0.00 0.00 0.00 4.17
208 215 1.269257 GGAGCTTTCTGTTTGTGTGGC 60.269 52.381 0.00 0.00 0.00 5.01
209 216 0.381801 AGCTTTCTGTTTGTGTGGCG 59.618 50.000 0.00 0.00 0.00 5.69
210 217 0.100503 GCTTTCTGTTTGTGTGGCGT 59.899 50.000 0.00 0.00 0.00 5.68
266 273 6.073003 CCGTTTTTGGATGGATCTATCTAAGC 60.073 42.308 17.50 11.01 30.70 3.09
267 274 6.483307 CGTTTTTGGATGGATCTATCTAAGCA 59.517 38.462 17.50 5.50 30.70 3.91
268 275 7.173907 CGTTTTTGGATGGATCTATCTAAGCAT 59.826 37.037 17.50 0.00 30.70 3.79
269 276 9.507329 GTTTTTGGATGGATCTATCTAAGCATA 57.493 33.333 17.50 1.73 30.70 3.14
279 286 7.617723 GGATCTATCTAAGCATATATCCCGGAT 59.382 40.741 0.73 4.99 30.66 4.18
284 291 5.830457 TCTAAGCATATATCCCGGATGAGAG 59.170 44.000 10.45 0.00 0.00 3.20
286 293 3.052566 AGCATATATCCCGGATGAGAGGA 60.053 47.826 10.45 0.00 0.00 3.71
289 296 0.251832 TATCCCGGATGAGAGGAGGC 60.252 60.000 10.45 0.00 31.94 4.70
638 661 2.623915 GCACTGACTGCCTGCCAAG 61.624 63.158 0.00 0.00 40.42 3.61
737 1089 2.126888 GCATCGCCACCACAAACG 60.127 61.111 0.00 0.00 0.00 3.60
783 1149 2.154462 CTTCCCCTATAAATGCGGCAG 58.846 52.381 9.25 0.00 0.00 4.85
798 1164 2.423446 CAGCAGATAGGGACGGCC 59.577 66.667 0.00 0.00 0.00 6.13
799 1165 3.227276 AGCAGATAGGGACGGCCG 61.227 66.667 26.86 26.86 33.83 6.13
816 1182 2.370633 GCCCCTTCCTCCTCCTCT 59.629 66.667 0.00 0.00 0.00 3.69
818 1184 1.074850 CCCCTTCCTCCTCCTCTCC 60.075 68.421 0.00 0.00 0.00 3.71
819 1185 1.074850 CCCTTCCTCCTCCTCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
842 1208 1.064952 CTCGTGGGTTTTGTTCACACC 59.935 52.381 0.00 0.00 36.02 4.16
845 1211 1.737201 GGGTTTTGTTCACACCCGG 59.263 57.895 0.00 0.00 41.00 5.73
847 1213 1.668101 GGTTTTGTTCACACCCGGCA 61.668 55.000 0.00 0.00 0.00 5.69
849 1215 0.394488 TTTTGTTCACACCCGGCAGA 60.394 50.000 0.00 0.00 0.00 4.26
850 1216 1.098712 TTTGTTCACACCCGGCAGAC 61.099 55.000 0.00 0.00 0.00 3.51
852 1218 4.980805 TTCACACCCGGCAGACGC 62.981 66.667 0.00 0.00 42.52 5.19
861 1227 2.743928 GGCAGACGCAGAGGGTTG 60.744 66.667 0.00 0.00 41.24 3.77
863 1229 2.743718 CAGACGCAGAGGGTTGGT 59.256 61.111 0.00 0.00 0.00 3.67
864 1230 1.071471 CAGACGCAGAGGGTTGGTT 59.929 57.895 0.00 0.00 0.00 3.67
865 1231 0.951040 CAGACGCAGAGGGTTGGTTC 60.951 60.000 0.00 0.00 0.00 3.62
866 1232 1.070786 GACGCAGAGGGTTGGTTCA 59.929 57.895 0.00 0.00 0.00 3.18
867 1233 0.321653 GACGCAGAGGGTTGGTTCAT 60.322 55.000 0.00 0.00 0.00 2.57
868 1234 0.321653 ACGCAGAGGGTTGGTTCATC 60.322 55.000 0.00 0.00 0.00 2.92
869 1235 0.036010 CGCAGAGGGTTGGTTCATCT 60.036 55.000 0.00 0.00 0.00 2.90
870 1236 1.743996 GCAGAGGGTTGGTTCATCTC 58.256 55.000 0.00 0.00 0.00 2.75
871 1237 2.009042 GCAGAGGGTTGGTTCATCTCG 61.009 57.143 0.00 0.00 0.00 4.04
872 1238 1.276421 CAGAGGGTTGGTTCATCTCGT 59.724 52.381 0.00 0.00 0.00 4.18
873 1239 1.550976 AGAGGGTTGGTTCATCTCGTC 59.449 52.381 0.00 0.00 0.00 4.20
874 1240 0.246635 AGGGTTGGTTCATCTCGTCG 59.753 55.000 0.00 0.00 0.00 5.12
875 1241 0.739813 GGGTTGGTTCATCTCGTCGG 60.740 60.000 0.00 0.00 0.00 4.79
876 1242 0.245539 GGTTGGTTCATCTCGTCGGA 59.754 55.000 0.00 0.00 0.00 4.55
886 1252 0.604780 TCTCGTCGGACTCGGAAACT 60.605 55.000 6.57 0.00 36.95 2.66
887 1253 0.454620 CTCGTCGGACTCGGAAACTG 60.455 60.000 6.57 0.00 36.95 3.16
896 1262 1.005394 TCGGAAACTGGCGGACTTC 60.005 57.895 0.00 2.25 0.00 3.01
921 1287 4.728110 GCGTACCCACCCAACCCC 62.728 72.222 0.00 0.00 0.00 4.95
922 1288 3.250734 CGTACCCACCCAACCCCA 61.251 66.667 0.00 0.00 0.00 4.96
923 1289 2.831645 CGTACCCACCCAACCCCAA 61.832 63.158 0.00 0.00 0.00 4.12
927 1293 4.631740 CCACCCAACCCCAACCCC 62.632 72.222 0.00 0.00 0.00 4.95
928 1294 3.838913 CACCCAACCCCAACCCCA 61.839 66.667 0.00 0.00 0.00 4.96
1002 1377 2.534990 CCAAACCCCCAGAATAAGCAA 58.465 47.619 0.00 0.00 0.00 3.91
1014 1389 0.550914 ATAAGCAAGCGATTCCCCCA 59.449 50.000 0.00 0.00 0.00 4.96
1304 1680 3.386237 GAGGTGCGTGCTCCTCCT 61.386 66.667 25.29 12.92 45.74 3.69
1305 1681 3.363844 GAGGTGCGTGCTCCTCCTC 62.364 68.421 25.29 16.58 45.74 3.71
1306 1682 4.459089 GGTGCGTGCTCCTCCTCC 62.459 72.222 5.72 0.00 0.00 4.30
1309 1685 3.844090 GCGTGCTCCTCCTCCTCC 61.844 72.222 0.00 0.00 0.00 4.30
1310 1686 3.522731 CGTGCTCCTCCTCCTCCG 61.523 72.222 0.00 0.00 0.00 4.63
1311 1687 2.363147 GTGCTCCTCCTCCTCCGT 60.363 66.667 0.00 0.00 0.00 4.69
1312 1688 1.985116 GTGCTCCTCCTCCTCCGTT 60.985 63.158 0.00 0.00 0.00 4.44
1313 1689 1.229209 TGCTCCTCCTCCTCCGTTT 60.229 57.895 0.00 0.00 0.00 3.60
1314 1690 1.258445 TGCTCCTCCTCCTCCGTTTC 61.258 60.000 0.00 0.00 0.00 2.78
1315 1691 1.810532 CTCCTCCTCCTCCGTTTCG 59.189 63.158 0.00 0.00 0.00 3.46
1316 1692 2.184579 CCTCCTCCTCCGTTTCGC 59.815 66.667 0.00 0.00 0.00 4.70
1317 1693 2.202623 CTCCTCCTCCGTTTCGCG 60.203 66.667 0.00 0.00 40.95 5.87
1318 1694 2.674033 TCCTCCTCCGTTTCGCGA 60.674 61.111 3.71 3.71 44.77 5.87
1359 2011 2.551032 GTTTCCGGTTTTGTCTGGGTAG 59.449 50.000 0.00 0.00 34.81 3.18
1472 2127 4.586841 TCTCCTCCGGACTAGTACTAGTAC 59.413 50.000 30.80 29.77 45.63 2.73
1473 2128 4.551671 TCCTCCGGACTAGTACTAGTACT 58.448 47.826 32.82 32.39 45.63 2.73
1474 2129 5.706447 TCCTCCGGACTAGTACTAGTACTA 58.294 45.833 32.82 31.39 45.63 1.82
1493 2148 7.620880 AGTACTACTACATTTCAAAGCCATCA 58.379 34.615 0.00 0.00 0.00 3.07
1552 2210 1.322538 TACGGACGAGGGGCTAAACC 61.323 60.000 0.00 0.00 37.93 3.27
1628 2286 5.163612 GGCTTCCACAAGGATTTCTGTTATC 60.164 44.000 0.00 0.00 45.26 1.75
1638 2296 9.743057 CAAGGATTTCTGTTATCTACTGTAGAG 57.257 37.037 20.95 8.76 38.38 2.43
2003 2710 2.421073 GCAACTGATCAATGCTGCTGTA 59.579 45.455 20.42 0.00 37.12 2.74
2030 2737 3.904800 TCTTGTTGTGGTTCTCTGTCA 57.095 42.857 0.00 0.00 0.00 3.58
2125 2835 3.911989 GCATCCTGCATTCAACTCG 57.088 52.632 0.00 0.00 44.26 4.18
2131 2841 3.430862 GCATTCAACTCGGCCGCA 61.431 61.111 23.51 8.85 0.00 5.69
2159 2870 4.630644 ATGTTCCCAGATCGCATTAGAT 57.369 40.909 0.00 0.00 0.00 1.98
2160 2871 5.745312 ATGTTCCCAGATCGCATTAGATA 57.255 39.130 0.00 0.00 0.00 1.98
2161 2872 5.139435 TGTTCCCAGATCGCATTAGATAG 57.861 43.478 0.00 0.00 0.00 2.08
2304 3015 6.934056 CCATAGAGATGGTAGATCTGGAAAG 58.066 44.000 5.18 0.00 46.80 2.62
2355 3066 8.194769 TGATCACTATAATGTGTACGTGATGTT 58.805 33.333 11.79 0.00 40.85 2.71
2431 3142 1.336887 GCACTACTTCTGCAGTCGGAA 60.337 52.381 14.67 0.00 36.88 4.30
2606 3317 2.649531 ACAATCAAAACGAGGACCCA 57.350 45.000 0.00 0.00 0.00 4.51
2708 3419 6.258947 TGAGTTTTGTGATCGAATTGTGTGTA 59.741 34.615 0.00 0.00 0.00 2.90
2727 3438 6.485648 GTGTGTAAAGGTAAGAATTGGAGTGT 59.514 38.462 0.00 0.00 0.00 3.55
2728 3439 6.485313 TGTGTAAAGGTAAGAATTGGAGTGTG 59.515 38.462 0.00 0.00 0.00 3.82
2875 3588 0.778720 TAGCTAGGAGGGGACTAGGC 59.221 60.000 0.00 0.00 44.43 3.93
2931 3644 1.705873 AATCCGAGCCGAAGATACCT 58.294 50.000 0.00 0.00 0.00 3.08
2984 3697 4.532126 TCCTCTGATTAGCCTTGAACTTCA 59.468 41.667 0.00 0.00 0.00 3.02
3164 3878 1.688772 CAATCTCCCTTGCCCATCTG 58.311 55.000 0.00 0.00 0.00 2.90
3290 4004 5.163343 ACTCTGTCAAACCAGCAAACTACTA 60.163 40.000 0.00 0.00 32.32 1.82
3389 4186 7.229106 CCAGTCAATCCACCAAAATTGATTTTT 59.771 33.333 0.00 0.00 42.21 1.94
3439 4237 1.208706 TATGCATTCTCCGGTTCCCA 58.791 50.000 3.54 0.00 0.00 4.37
3446 4244 2.678934 TCCGGTTCCCACTCCTCG 60.679 66.667 0.00 0.00 0.00 4.63
3472 4270 1.428869 GCATCCTCTGGATACCACCT 58.571 55.000 0.00 0.00 40.98 4.00
3480 4278 2.587777 TCTGGATACCACCTCTCCTCTT 59.412 50.000 0.00 0.00 0.00 2.85
3551 4349 4.922206 TCAAATCTTGTAATGGTGCTCCT 58.078 39.130 6.34 0.00 34.23 3.69
3552 4350 4.701651 TCAAATCTTGTAATGGTGCTCCTG 59.298 41.667 6.34 0.00 34.23 3.86
3565 4363 3.243816 TCCTGTGGCTGCTGCAGA 61.244 61.111 32.30 10.52 41.91 4.26
3601 4399 3.193267 TGTTGTCTGCTTGCTTGAGTTTT 59.807 39.130 0.00 0.00 0.00 2.43
3656 4454 9.662947 GGTTGGTATACCATATTAATCCACTAC 57.337 37.037 25.12 14.39 46.97 2.73
3676 4474 7.277539 CCACTACAACAACAATCATTTTTGTGT 59.722 33.333 2.63 6.30 39.68 3.72
3730 4528 2.595386 CGCCTAACATTTTTGTCTGGC 58.405 47.619 10.41 10.41 37.01 4.85
3731 4529 2.595386 GCCTAACATTTTTGTCTGGCG 58.405 47.619 6.58 0.00 33.16 5.69
3748 4547 1.611043 GCGAACTTTTGAGATGCAGC 58.389 50.000 0.00 0.00 0.00 5.25
3757 4556 7.928307 ACTTTTGAGATGCAGCTTTCTAATA 57.072 32.000 5.67 0.00 0.00 0.98
4137 4945 7.042254 GGAAGTTAGGCTTAACAACCATATACG 60.042 40.741 19.57 0.00 41.33 3.06
4215 5023 8.200120 GCTGCCTCTAAATTTTCAAATATTCCT 58.800 33.333 0.00 0.00 0.00 3.36
4295 5103 3.138283 TCAACCAAACTGGAGGAATCTGT 59.862 43.478 0.00 0.00 40.96 3.41
4329 5137 2.268762 TGAGCTGGTAATGTGTTGCA 57.731 45.000 0.00 0.00 0.00 4.08
4334 5142 4.309099 AGCTGGTAATGTGTTGCAATTTG 58.691 39.130 0.59 0.00 0.00 2.32
4634 5442 7.039784 GGGCTTATATCAACTTATGCATTGGAA 60.040 37.037 3.54 0.00 0.00 3.53
4699 5507 0.042881 GGTCCCCTGGAGGTAAGTCT 59.957 60.000 0.00 0.00 29.39 3.24
4763 5571 6.839124 AGACAATGCAAAAACTGATATCCA 57.161 33.333 0.00 0.00 0.00 3.41
4764 5572 7.414222 AGACAATGCAAAAACTGATATCCAT 57.586 32.000 0.00 0.00 0.00 3.41
4878 5686 2.530460 ATGGCCCTGTTGCTTTATCA 57.470 45.000 0.00 0.00 0.00 2.15
5270 6078 5.756195 GCCTTTAGCATCATATGTGTGAA 57.244 39.130 12.83 3.78 42.97 3.18
5326 6134 4.449068 CCGTAAACAGCATGATCTCATACC 59.551 45.833 0.00 0.00 39.69 2.73
5327 6135 4.449068 CGTAAACAGCATGATCTCATACCC 59.551 45.833 0.00 0.00 39.69 3.69
5332 6140 3.562973 CAGCATGATCTCATACCCAACAC 59.437 47.826 0.00 0.00 39.69 3.32
5616 6424 1.928503 CCATGTTGGCGCATTTCATTC 59.071 47.619 10.83 0.00 0.00 2.67
6067 6875 3.773560 TCCAAAACCTGGTCCCATAAAG 58.226 45.455 0.00 0.00 46.51 1.85
6130 6938 5.045651 ACATCTCCATCCACTGTCATTGTTA 60.046 40.000 0.00 0.00 0.00 2.41
6458 7266 2.189594 TCAGTTGAATGCCTGTGGAG 57.810 50.000 0.00 0.00 0.00 3.86
6576 7384 4.743151 GCGTGAAACAGTCGGATATATTCA 59.257 41.667 0.00 0.00 35.74 2.57
6637 7445 4.223477 TGGATATCTCATGCATTGATCCGA 59.777 41.667 13.38 0.00 33.99 4.55
6670 7480 5.028375 GTGTTCAGTAAACTGTCAAAGCAC 58.972 41.667 9.81 5.61 44.12 4.40
6744 7713 2.666508 CTGGTCGTTCTGTTATTGTCCG 59.333 50.000 0.00 0.00 0.00 4.79
6762 7732 4.847990 TCCGCTTAGGATTAAAAAGGGA 57.152 40.909 0.00 0.00 45.98 4.20
6767 7737 7.283807 TCCGCTTAGGATTAAAAAGGGAAATAC 59.716 37.037 0.00 0.00 45.98 1.89
6791 7761 2.027003 TATTGTTTCGGTAAGCGGGG 57.973 50.000 0.00 0.00 0.00 5.73
6983 7953 1.303236 CAACCAGGCCACGATTCCA 60.303 57.895 5.01 0.00 0.00 3.53
7052 8022 4.827835 GGGACCAAGGAAATAAGGATAAGC 59.172 45.833 0.00 0.00 0.00 3.09
7070 8040 0.970427 GCCGGTCATTGGGAATTGGT 60.970 55.000 1.90 0.00 0.00 3.67
7093 8063 7.036220 GGTGATGGTCTAAATGGATATACTCG 58.964 42.308 0.00 0.00 0.00 4.18
7266 8236 1.137513 GTGTGCACGACCAGTTAGTC 58.862 55.000 13.13 0.00 0.00 2.59
7325 8295 4.747540 TGAGTGCACATACATGAACAAC 57.252 40.909 21.04 0.00 0.00 3.32
7340 8310 4.241681 TGAACAACAACTTGGCAAGAAAC 58.758 39.130 32.50 14.18 0.00 2.78
7375 8345 3.780850 ACTCCTAAAGGGTATGGGACAAG 59.219 47.826 0.00 0.00 38.08 3.16
7405 8375 2.728007 AGCCTCTGAGCCATTAAAACC 58.272 47.619 0.00 0.00 0.00 3.27
7417 8387 4.824289 CCATTAAAACCTCAAAGCAGCAT 58.176 39.130 0.00 0.00 0.00 3.79
7459 8429 2.602257 AAGAACTTGCCTGCAAAACC 57.398 45.000 6.00 0.00 35.33 3.27
7463 8433 2.777832 ACTTGCCTGCAAAACCAAAA 57.222 40.000 6.00 0.00 35.33 2.44
7534 8504 1.805428 GCACCGAATGGCCAAGTTGT 61.805 55.000 10.96 1.90 39.70 3.32
7638 8608 1.135046 CATTCCTCGTGATAGCAGCG 58.865 55.000 0.00 0.00 0.00 5.18
7686 8656 2.292323 CCTAGTACTTGTCACCCCTCCT 60.292 54.545 0.00 0.00 0.00 3.69
7687 8657 1.939980 AGTACTTGTCACCCCTCCTC 58.060 55.000 0.00 0.00 0.00 3.71
7702 8672 0.771127 TCCTCCCCTGTCACAAAAGG 59.229 55.000 0.00 0.00 0.00 3.11
7708 8678 4.599041 TCCCCTGTCACAAAAGGATATTG 58.401 43.478 0.00 0.00 35.40 1.90
7718 8688 6.947733 TCACAAAAGGATATTGTCAATCTGGT 59.052 34.615 0.07 0.00 38.90 4.00
7733 8703 0.179020 CTGGTGCCTTGGAGACACAA 60.179 55.000 0.00 0.00 42.67 3.33
7757 8727 7.213178 ACCAGATAGGATTATTGAGTTTGGT 57.787 36.000 0.00 0.00 41.22 3.67
7766 8736 6.014584 GGATTATTGAGTTTGGTTCTTTGGGT 60.015 38.462 0.00 0.00 0.00 4.51
7775 8745 2.512056 TGGTTCTTTGGGTCCTTTCTCA 59.488 45.455 0.00 0.00 0.00 3.27
7790 8760 4.163839 CCTTTCTCATTGACATCTCCCTCT 59.836 45.833 0.00 0.00 0.00 3.69
7811 8781 2.031120 CCAAAGTCAAACAAGGCCTCA 58.969 47.619 5.23 0.00 0.00 3.86
7832 8802 2.969806 AAAGGCATGTGCAGACGCG 61.970 57.895 3.53 3.53 44.36 6.01
7885 8855 0.317160 GCAACCCAAAGCAGGTAACC 59.683 55.000 0.00 0.00 36.27 2.85
7907 8877 5.221925 ACCTCAAAGGATCTTACAGAGCAAA 60.222 40.000 0.00 0.00 37.67 3.68
7924 8895 8.624776 ACAGAGCAAAATATTAATGTAGCCTTC 58.375 33.333 0.00 0.00 0.00 3.46
7982 8953 8.723942 AGAATGATGTCACAAAATAGTACTCC 57.276 34.615 0.00 0.00 0.00 3.85
7983 8954 8.543774 AGAATGATGTCACAAAATAGTACTCCT 58.456 33.333 0.00 0.00 0.00 3.69
7984 8955 8.723942 AATGATGTCACAAAATAGTACTCCTC 57.276 34.615 0.00 0.00 0.00 3.71
7985 8956 7.482169 TGATGTCACAAAATAGTACTCCTCT 57.518 36.000 0.00 0.00 0.00 3.69
7986 8957 7.323420 TGATGTCACAAAATAGTACTCCTCTG 58.677 38.462 0.00 0.00 0.00 3.35
7987 8958 6.665992 TGTCACAAAATAGTACTCCTCTGT 57.334 37.500 0.00 0.00 0.00 3.41
7988 8959 6.688578 TGTCACAAAATAGTACTCCTCTGTC 58.311 40.000 0.00 0.00 0.00 3.51
7989 8960 6.100668 GTCACAAAATAGTACTCCTCTGTCC 58.899 44.000 0.00 0.00 0.00 4.02
7990 8961 5.187186 TCACAAAATAGTACTCCTCTGTCCC 59.813 44.000 0.00 0.00 0.00 4.46
7991 8962 5.046591 CACAAAATAGTACTCCTCTGTCCCA 60.047 44.000 0.00 0.00 0.00 4.37
7992 8963 5.726793 ACAAAATAGTACTCCTCTGTCCCAT 59.273 40.000 0.00 0.00 0.00 4.00
7993 8964 6.901300 ACAAAATAGTACTCCTCTGTCCCATA 59.099 38.462 0.00 0.00 0.00 2.74
7994 8965 7.402071 ACAAAATAGTACTCCTCTGTCCCATAA 59.598 37.037 0.00 0.00 0.00 1.90
7995 8966 8.432805 CAAAATAGTACTCCTCTGTCCCATAAT 58.567 37.037 0.00 0.00 0.00 1.28
7996 8967 9.670442 AAAATAGTACTCCTCTGTCCCATAATA 57.330 33.333 0.00 0.00 0.00 0.98
7997 8968 9.845214 AAATAGTACTCCTCTGTCCCATAATAT 57.155 33.333 0.00 0.00 0.00 1.28
8000 8971 7.415086 AGTACTCCTCTGTCCCATAATATAGG 58.585 42.308 0.00 0.00 0.00 2.57
8001 8972 6.485388 ACTCCTCTGTCCCATAATATAGGA 57.515 41.667 0.00 0.00 0.00 2.94
8055 9026 5.515797 TGTCTTACATTATGAGACGGAGG 57.484 43.478 0.00 0.00 44.98 4.30
8056 9027 4.341235 TGTCTTACATTATGAGACGGAGGG 59.659 45.833 0.00 0.00 44.98 4.30
8057 9028 4.583489 GTCTTACATTATGAGACGGAGGGA 59.417 45.833 0.00 0.00 34.53 4.20
8058 9029 4.827835 TCTTACATTATGAGACGGAGGGAG 59.172 45.833 0.00 0.00 0.00 4.30
8059 9030 3.033659 ACATTATGAGACGGAGGGAGT 57.966 47.619 0.00 0.00 0.00 3.85
8060 9031 4.180377 ACATTATGAGACGGAGGGAGTA 57.820 45.455 0.00 0.00 0.00 2.59
8061 9032 4.145807 ACATTATGAGACGGAGGGAGTAG 58.854 47.826 0.00 0.00 0.00 2.57
8062 9033 3.947612 TTATGAGACGGAGGGAGTAGT 57.052 47.619 0.00 0.00 0.00 2.73
8063 9034 5.163120 ACATTATGAGACGGAGGGAGTAGTA 60.163 44.000 0.00 0.00 0.00 1.82
8069 9040 4.351127 AGACGGAGGGAGTAGTAATTTGT 58.649 43.478 0.00 0.00 0.00 2.83
8151 9123 6.581542 GCATGCTTATTTATCTTCACTGCATC 59.418 38.462 11.37 0.00 36.64 3.91
8168 9140 1.283029 CATCCAGTCCATTGACCCTGT 59.717 52.381 0.00 0.00 42.81 4.00
8169 9141 2.335681 TCCAGTCCATTGACCCTGTA 57.664 50.000 0.00 0.00 42.81 2.74
8170 9142 1.906574 TCCAGTCCATTGACCCTGTAC 59.093 52.381 0.00 0.00 42.81 2.90
8171 9143 1.909302 CCAGTCCATTGACCCTGTACT 59.091 52.381 0.00 0.00 42.81 2.73
8172 9144 3.104512 CCAGTCCATTGACCCTGTACTA 58.895 50.000 0.00 0.00 42.81 1.82
8173 9145 3.118738 CCAGTCCATTGACCCTGTACTAC 60.119 52.174 0.00 0.00 42.81 2.73
8217 9189 8.403236 GGTTAATCTGTTAACTTTGACACTGTT 58.597 33.333 7.22 0.00 45.73 3.16
8249 9221 6.697892 CGTCAGGATTTTACAGAATAGGAGAC 59.302 42.308 0.00 0.00 0.00 3.36
8300 9272 1.817447 ACCCGCTGAGACTTACAGTAC 59.183 52.381 0.00 0.00 37.64 2.73
8307 9279 5.583495 GCTGAGACTTACAGTACCATACAG 58.417 45.833 0.00 0.00 37.64 2.74
8347 9320 4.399219 AGGAGCAAAAGAAGAGTTAACCC 58.601 43.478 0.88 0.00 0.00 4.11
8364 9337 4.385358 AACCCAGTTGATGTTCACAAAC 57.615 40.909 0.00 0.00 35.85 2.93
8424 9397 1.531149 CATCGACACCTTGCGTTTCTT 59.469 47.619 0.00 0.00 0.00 2.52
8510 9483 6.972901 CAGTTGTAGTTTTCCCTTCTCAAAAC 59.027 38.462 0.00 0.00 41.08 2.43
8542 9515 6.600427 TGGGTAAAATCGGAGAAAGATAAACC 59.400 38.462 0.00 0.00 43.58 3.27
8602 9576 2.299013 TCTGCTACCGTGAACTGTGAAT 59.701 45.455 0.00 0.00 0.00 2.57
8688 9667 8.955061 ATAAACAGAGATGAATGTTTCAAACG 57.045 30.769 6.58 0.00 44.20 3.60
8689 9668 6.377327 AACAGAGATGAATGTTTCAAACGT 57.623 33.333 0.00 0.00 43.95 3.99
8690 9669 5.990408 ACAGAGATGAATGTTTCAAACGTC 58.010 37.500 0.00 0.00 43.95 4.34
8691 9670 5.075448 CAGAGATGAATGTTTCAAACGTCG 58.925 41.667 0.00 0.00 43.95 5.12
8692 9671 4.750098 AGAGATGAATGTTTCAAACGTCGT 59.250 37.500 0.00 0.00 43.95 4.34
8693 9672 5.924254 AGAGATGAATGTTTCAAACGTCGTA 59.076 36.000 0.00 0.00 43.95 3.43
8694 9673 5.912528 AGATGAATGTTTCAAACGTCGTAC 58.087 37.500 0.00 0.00 43.95 3.67
8695 9674 5.464057 AGATGAATGTTTCAAACGTCGTACA 59.536 36.000 0.00 0.00 43.95 2.90
8697 9676 5.494618 TGAATGTTTCAAACGTCGTACAAG 58.505 37.500 0.00 0.00 36.59 3.16
8702 9681 6.141462 TGTTTCAAACGTCGTACAAGTTTTT 58.859 32.000 0.00 0.00 36.12 1.94
8733 9712 3.426560 GCGCTGAAATGACATTCATGTGA 60.427 43.478 0.00 0.00 41.95 3.58
8737 9716 5.563280 GCTGAAATGACATTCATGTGACACA 60.563 40.000 11.41 11.41 41.95 3.72
8792 9772 2.295349 GTGTGGTTAGGACTCAGTCGAA 59.705 50.000 0.00 0.00 32.65 3.71
8795 9775 1.135460 GGTTAGGACTCAGTCGAACGG 60.135 57.143 12.68 0.00 33.08 4.44
8796 9776 1.808945 GTTAGGACTCAGTCGAACGGA 59.191 52.381 0.00 0.00 32.65 4.69
8797 9777 1.735386 TAGGACTCAGTCGAACGGAG 58.265 55.000 0.00 11.43 44.32 4.63
8798 9778 0.036448 AGGACTCAGTCGAACGGAGA 59.964 55.000 17.07 0.00 41.92 3.71
8799 9779 0.168568 GGACTCAGTCGAACGGAGAC 59.831 60.000 17.07 12.50 41.92 3.36
8829 9819 9.268268 TCAAGTGAGATAACGTGTAAGAAAAAT 57.732 29.630 0.00 0.00 32.25 1.82
8877 9869 8.907222 TGATGTAAAAGCTCATGAATATAGCA 57.093 30.769 6.65 0.00 38.75 3.49
8878 9870 9.511272 TGATGTAAAAGCTCATGAATATAGCAT 57.489 29.630 6.65 2.27 38.75 3.79
8879 9871 9.985318 GATGTAAAAGCTCATGAATATAGCATC 57.015 33.333 6.65 7.13 38.75 3.91
8880 9872 9.736414 ATGTAAAAGCTCATGAATATAGCATCT 57.264 29.630 6.65 0.00 38.75 2.90
8881 9873 8.996271 TGTAAAAGCTCATGAATATAGCATCTG 58.004 33.333 6.65 0.00 38.75 2.90
8882 9874 9.212641 GTAAAAGCTCATGAATATAGCATCTGA 57.787 33.333 6.65 0.00 38.75 3.27
8883 9875 7.670009 AAAGCTCATGAATATAGCATCTGAC 57.330 36.000 6.65 0.00 38.75 3.51
8886 9878 8.131847 AGCTCATGAATATAGCATCTGACTTA 57.868 34.615 6.65 0.00 38.75 2.24
8887 9879 8.252417 AGCTCATGAATATAGCATCTGACTTAG 58.748 37.037 6.65 0.00 38.75 2.18
8888 9880 8.249638 GCTCATGAATATAGCATCTGACTTAGA 58.750 37.037 0.00 0.00 40.37 2.10
8889 9881 9.571810 CTCATGAATATAGCATCTGACTTAGAC 57.428 37.037 0.00 0.00 38.49 2.59
8890 9882 9.082313 TCATGAATATAGCATCTGACTTAGACA 57.918 33.333 0.00 0.00 38.49 3.41
8891 9883 9.872721 CATGAATATAGCATCTGACTTAGACAT 57.127 33.333 0.00 0.00 38.49 3.06
8896 9888 5.939764 AGCATCTGACTTAGACATAACCA 57.060 39.130 0.00 0.00 38.49 3.67
8897 9889 6.299805 AGCATCTGACTTAGACATAACCAA 57.700 37.500 0.00 0.00 38.49 3.67
8898 9890 6.344500 AGCATCTGACTTAGACATAACCAAG 58.656 40.000 0.00 0.00 38.49 3.61
8899 9891 6.070538 AGCATCTGACTTAGACATAACCAAGT 60.071 38.462 0.00 0.00 38.49 3.16
8900 9892 6.256757 GCATCTGACTTAGACATAACCAAGTC 59.743 42.308 6.41 6.41 44.56 3.01
8901 9893 7.551585 CATCTGACTTAGACATAACCAAGTCT 58.448 38.462 12.86 0.00 44.59 3.24
8902 9894 7.159322 TCTGACTTAGACATAACCAAGTCTC 57.841 40.000 12.86 0.00 44.59 3.36
8908 9900 5.808366 AGACATAACCAAGTCTCTGTTGA 57.192 39.130 0.00 0.00 40.96 3.18
8910 9902 4.642429 ACATAACCAAGTCTCTGTTGACC 58.358 43.478 0.00 0.00 37.66 4.02
8912 9904 0.249911 ACCAAGTCTCTGTTGACCGC 60.250 55.000 0.00 0.00 37.66 5.68
8930 9922 5.132897 ACCGCAATTTAGCAAGATTGAAA 57.867 34.783 9.31 0.00 35.74 2.69
9003 9995 7.649533 TCATCCAGATGAATTTAGCAACATT 57.350 32.000 7.88 0.00 44.14 2.71
9004 9996 7.485810 TCATCCAGATGAATTTAGCAACATTG 58.514 34.615 7.88 0.00 44.14 2.82
9005 9997 7.339976 TCATCCAGATGAATTTAGCAACATTGA 59.660 33.333 7.88 0.00 44.14 2.57
9006 9998 7.465353 TCCAGATGAATTTAGCAACATTGAA 57.535 32.000 0.00 0.00 0.00 2.69
9007 9999 7.894708 TCCAGATGAATTTAGCAACATTGAAA 58.105 30.769 0.00 0.00 0.00 2.69
9008 10000 8.366401 TCCAGATGAATTTAGCAACATTGAAAA 58.634 29.630 0.00 0.00 0.00 2.29
9009 10001 8.991026 CCAGATGAATTTAGCAACATTGAAAAA 58.009 29.630 0.00 0.00 0.00 1.94
9115 10108 4.071961 TGTCTCAACTGTTGCTACACAT 57.928 40.909 15.52 0.00 0.00 3.21
9128 10144 8.039603 TGTTGCTACACATCTATTTAAGTTGG 57.960 34.615 0.00 0.00 30.38 3.77
9149 10165 4.655027 GGTATTTAACCTTCGGCTTTTCG 58.345 43.478 0.00 0.00 45.75 3.46
9150 10166 3.842732 ATTTAACCTTCGGCTTTTCGG 57.157 42.857 0.00 0.00 0.00 4.30
9151 10167 2.259266 TTAACCTTCGGCTTTTCGGT 57.741 45.000 0.00 0.00 0.00 4.69
9152 10168 3.399440 TTAACCTTCGGCTTTTCGGTA 57.601 42.857 0.00 0.00 0.00 4.02
9153 10169 2.484742 AACCTTCGGCTTTTCGGTAT 57.515 45.000 0.00 0.00 0.00 2.73
9154 10170 2.484742 ACCTTCGGCTTTTCGGTATT 57.515 45.000 0.00 0.00 0.00 1.89
9155 10171 2.081462 ACCTTCGGCTTTTCGGTATTG 58.919 47.619 0.00 0.00 0.00 1.90
9175 10191 1.545651 GCTAAGGGCACAACTCCAACT 60.546 52.381 0.00 0.00 41.35 3.16
9183 10199 1.237285 ACAACTCCAACTCCATGCGC 61.237 55.000 0.00 0.00 0.00 6.09
9196 10212 1.079875 CATGCGCCAAAATGCCTCAC 61.080 55.000 4.18 0.00 0.00 3.51
9198 10214 1.734117 GCGCCAAAATGCCTCACAC 60.734 57.895 0.00 0.00 0.00 3.82
9199 10215 1.080569 CGCCAAAATGCCTCACACC 60.081 57.895 0.00 0.00 0.00 4.16
9215 10239 2.299993 CACCATGCAGTGTCGATACT 57.700 50.000 9.27 9.27 32.89 2.12
9225 10249 4.615912 GCAGTGTCGATACTTTTTGCCATT 60.616 41.667 12.63 0.00 0.00 3.16
9226 10250 5.088739 CAGTGTCGATACTTTTTGCCATTC 58.911 41.667 12.63 0.00 0.00 2.67
9231 10255 6.092748 GTCGATACTTTTTGCCATTCAATGT 58.907 36.000 0.00 0.00 34.12 2.71
9233 10257 6.072230 TCGATACTTTTTGCCATTCAATGTCA 60.072 34.615 0.00 0.00 34.12 3.58
9242 10273 3.244078 GCCATTCAATGTCATGCATCCAT 60.244 43.478 0.00 0.00 36.67 3.41
9250 10281 7.557724 TCAATGTCATGCATCCATTAAATGTT 58.442 30.769 16.74 0.00 36.67 2.71
9257 10288 5.417811 TGCATCCATTAAATGTTCGCAAAT 58.582 33.333 0.00 0.00 0.00 2.32
9286 10317 3.637769 ACCCCACAAACTAGAAGCAAAA 58.362 40.909 0.00 0.00 0.00 2.44
9323 10355 1.218047 GTCTGGGCTGCGTCATGTA 59.782 57.895 0.00 0.00 0.00 2.29
9345 10377 1.673626 GCGTTCGACAATTAGGACCCA 60.674 52.381 0.00 0.00 0.00 4.51
9346 10378 1.997606 CGTTCGACAATTAGGACCCAC 59.002 52.381 0.00 0.00 0.00 4.61
9350 10382 2.369203 TCGACAATTAGGACCCACACAA 59.631 45.455 0.00 0.00 0.00 3.33
9359 10391 2.041216 AGGACCCACACAAAACCCTATC 59.959 50.000 0.00 0.00 0.00 2.08
9361 10393 3.344515 GACCCACACAAAACCCTATCTC 58.655 50.000 0.00 0.00 0.00 2.75
9363 10395 3.397955 ACCCACACAAAACCCTATCTCTT 59.602 43.478 0.00 0.00 0.00 2.85
9367 10399 5.048713 CCACACAAAACCCTATCTCTTGTTC 60.049 44.000 0.00 0.00 0.00 3.18
9368 10400 5.765182 CACACAAAACCCTATCTCTTGTTCT 59.235 40.000 0.00 0.00 0.00 3.01
9377 10409 4.081198 CCTATCTCTTGTTCTGCTCCAACT 60.081 45.833 0.00 0.00 0.00 3.16
9382 10414 0.106769 TGTTCTGCTCCAACTGCCAA 60.107 50.000 0.00 0.00 0.00 4.52
9383 10415 1.032014 GTTCTGCTCCAACTGCCAAA 58.968 50.000 0.00 0.00 0.00 3.28
9384 10416 1.408702 GTTCTGCTCCAACTGCCAAAA 59.591 47.619 0.00 0.00 0.00 2.44
9385 10417 1.032014 TCTGCTCCAACTGCCAAAAC 58.968 50.000 0.00 0.00 0.00 2.43
9386 10418 0.032540 CTGCTCCAACTGCCAAAACC 59.967 55.000 0.00 0.00 0.00 3.27
9387 10419 1.007387 GCTCCAACTGCCAAAACCG 60.007 57.895 0.00 0.00 0.00 4.44
9388 10420 1.659794 CTCCAACTGCCAAAACCGG 59.340 57.895 0.00 0.00 0.00 5.28
9389 10421 1.805428 CTCCAACTGCCAAAACCGGG 61.805 60.000 6.32 0.00 0.00 5.73
9390 10422 2.733945 CAACTGCCAAAACCGGGG 59.266 61.111 6.32 0.00 0.00 5.73
9391 10423 1.830408 CAACTGCCAAAACCGGGGA 60.830 57.895 6.32 0.00 0.00 4.81
9406 10438 4.699522 GGAGGTTTGCGGGCGTCT 62.700 66.667 0.00 0.00 0.00 4.18
9407 10439 3.423154 GAGGTTTGCGGGCGTCTG 61.423 66.667 0.00 0.00 0.00 3.51
9419 10451 3.190849 CGTCTGGGCTGCGTCATG 61.191 66.667 0.00 0.00 0.00 3.07
9420 10452 2.046892 GTCTGGGCTGCGTCATGT 60.047 61.111 0.00 0.00 0.00 3.21
9421 10453 1.218047 GTCTGGGCTGCGTCATGTA 59.782 57.895 0.00 0.00 0.00 2.29
9422 10454 0.807667 GTCTGGGCTGCGTCATGTAG 60.808 60.000 0.00 0.00 0.00 2.74
9423 10455 1.522355 CTGGGCTGCGTCATGTAGG 60.522 63.158 0.00 0.00 0.00 3.18
9430 10462 4.777781 CGTCATGTAGGCGTTCGA 57.222 55.556 0.00 0.00 41.32 3.71
9431 10463 2.275703 CGTCATGTAGGCGTTCGAC 58.724 57.895 0.00 0.00 41.32 4.20
9432 10464 0.455464 CGTCATGTAGGCGTTCGACA 60.455 55.000 0.00 0.00 41.32 4.35
9433 10465 1.705256 GTCATGTAGGCGTTCGACAA 58.295 50.000 0.00 0.00 34.77 3.18
9434 10466 2.268298 GTCATGTAGGCGTTCGACAAT 58.732 47.619 0.00 0.00 34.77 2.71
9435 10467 2.671396 GTCATGTAGGCGTTCGACAATT 59.329 45.455 0.00 0.00 34.77 2.32
9436 10468 3.861113 GTCATGTAGGCGTTCGACAATTA 59.139 43.478 0.00 0.00 34.77 1.40
9437 10469 4.026804 GTCATGTAGGCGTTCGACAATTAG 60.027 45.833 0.00 0.00 34.77 1.73
9438 10470 2.883574 TGTAGGCGTTCGACAATTAGG 58.116 47.619 0.00 0.00 0.00 2.69
9439 10471 2.492881 TGTAGGCGTTCGACAATTAGGA 59.507 45.455 0.00 0.00 0.00 2.94
9440 10472 2.005971 AGGCGTTCGACAATTAGGAC 57.994 50.000 0.00 0.00 0.00 3.85
9441 10473 1.004595 GGCGTTCGACAATTAGGACC 58.995 55.000 0.00 0.00 0.00 4.46
9442 10474 1.004595 GCGTTCGACAATTAGGACCC 58.995 55.000 0.00 0.00 0.00 4.46
9443 10475 1.673626 GCGTTCGACAATTAGGACCCA 60.674 52.381 0.00 0.00 0.00 4.51
9444 10476 1.997606 CGTTCGACAATTAGGACCCAC 59.002 52.381 0.00 0.00 0.00 4.61
9445 10477 2.610976 CGTTCGACAATTAGGACCCACA 60.611 50.000 0.00 0.00 0.00 4.17
9446 10478 2.740447 GTTCGACAATTAGGACCCACAC 59.260 50.000 0.00 0.00 0.00 3.82
9447 10479 1.972075 TCGACAATTAGGACCCACACA 59.028 47.619 0.00 0.00 0.00 3.72
9448 10480 2.369203 TCGACAATTAGGACCCACACAA 59.631 45.455 0.00 0.00 0.00 3.33
9449 10481 3.142951 CGACAATTAGGACCCACACAAA 58.857 45.455 0.00 0.00 0.00 2.83
9450 10482 3.566322 CGACAATTAGGACCCACACAAAA 59.434 43.478 0.00 0.00 0.00 2.44
9451 10483 4.555906 CGACAATTAGGACCCACACAAAAC 60.556 45.833 0.00 0.00 0.00 2.43
9452 10484 3.639561 ACAATTAGGACCCACACAAAACC 59.360 43.478 0.00 0.00 0.00 3.27
9453 10485 2.368311 TTAGGACCCACACAAAACCC 57.632 50.000 0.00 0.00 0.00 4.11
9454 10486 1.525175 TAGGACCCACACAAAACCCT 58.475 50.000 0.00 0.00 0.00 4.34
9455 10487 1.525175 AGGACCCACACAAAACCCTA 58.475 50.000 0.00 0.00 0.00 3.53
9456 10488 2.070573 AGGACCCACACAAAACCCTAT 58.929 47.619 0.00 0.00 0.00 2.57
9457 10489 2.041216 AGGACCCACACAAAACCCTATC 59.959 50.000 0.00 0.00 0.00 2.08
9458 10490 2.041216 GGACCCACACAAAACCCTATCT 59.959 50.000 0.00 0.00 0.00 1.98
9459 10491 3.344515 GACCCACACAAAACCCTATCTC 58.655 50.000 0.00 0.00 0.00 2.75
9460 10492 2.986728 ACCCACACAAAACCCTATCTCT 59.013 45.455 0.00 0.00 0.00 3.10
9461 10493 3.397955 ACCCACACAAAACCCTATCTCTT 59.602 43.478 0.00 0.00 0.00 2.85
9462 10494 3.758554 CCCACACAAAACCCTATCTCTTG 59.241 47.826 0.00 0.00 0.00 3.02
9463 10495 4.398319 CCACACAAAACCCTATCTCTTGT 58.602 43.478 0.00 0.00 0.00 3.16
9464 10496 4.827284 CCACACAAAACCCTATCTCTTGTT 59.173 41.667 0.00 0.00 0.00 2.83
9465 10497 5.048713 CCACACAAAACCCTATCTCTTGTTC 60.049 44.000 0.00 0.00 0.00 3.18
9466 10498 5.765182 CACACAAAACCCTATCTCTTGTTCT 59.235 40.000 0.00 0.00 0.00 3.01
9467 10499 5.765182 ACACAAAACCCTATCTCTTGTTCTG 59.235 40.000 0.00 0.00 0.00 3.02
9468 10500 4.762251 ACAAAACCCTATCTCTTGTTCTGC 59.238 41.667 0.00 0.00 0.00 4.26
9469 10501 4.917906 AAACCCTATCTCTTGTTCTGCT 57.082 40.909 0.00 0.00 0.00 4.24
9470 10502 4.479786 AACCCTATCTCTTGTTCTGCTC 57.520 45.455 0.00 0.00 0.00 4.26
9471 10503 2.769095 ACCCTATCTCTTGTTCTGCTCC 59.231 50.000 0.00 0.00 0.00 4.70
9472 10504 2.768527 CCCTATCTCTTGTTCTGCTCCA 59.231 50.000 0.00 0.00 0.00 3.86
9473 10505 3.198635 CCCTATCTCTTGTTCTGCTCCAA 59.801 47.826 0.00 0.00 0.00 3.53
9474 10506 4.187694 CCTATCTCTTGTTCTGCTCCAAC 58.812 47.826 0.00 0.00 0.00 3.77
9475 10507 4.081198 CCTATCTCTTGTTCTGCTCCAACT 60.081 45.833 0.00 0.00 0.00 3.16
9476 10508 3.117491 TCTCTTGTTCTGCTCCAACTG 57.883 47.619 0.00 0.00 0.00 3.16
9477 10509 1.534595 CTCTTGTTCTGCTCCAACTGC 59.465 52.381 0.00 0.00 0.00 4.40
9478 10510 0.595095 CTTGTTCTGCTCCAACTGCC 59.405 55.000 0.00 0.00 0.00 4.85
9479 10511 0.106769 TTGTTCTGCTCCAACTGCCA 60.107 50.000 0.00 0.00 0.00 4.92
9480 10512 0.819259 TGTTCTGCTCCAACTGCCAC 60.819 55.000 0.00 0.00 0.00 5.01
9481 10513 0.536006 GTTCTGCTCCAACTGCCACT 60.536 55.000 0.00 0.00 0.00 4.00
9482 10514 0.250467 TTCTGCTCCAACTGCCACTC 60.250 55.000 0.00 0.00 0.00 3.51
9483 10515 1.673665 CTGCTCCAACTGCCACTCC 60.674 63.158 0.00 0.00 0.00 3.85
9484 10516 2.743928 GCTCCAACTGCCACTCCG 60.744 66.667 0.00 0.00 0.00 4.63
9485 10517 3.059982 CTCCAACTGCCACTCCGA 58.940 61.111 0.00 0.00 0.00 4.55
9486 10518 1.599047 CTCCAACTGCCACTCCGAT 59.401 57.895 0.00 0.00 0.00 4.18
9487 10519 0.460987 CTCCAACTGCCACTCCGATC 60.461 60.000 0.00 0.00 0.00 3.69
9488 10520 0.904865 TCCAACTGCCACTCCGATCT 60.905 55.000 0.00 0.00 0.00 2.75
9489 10521 0.460987 CCAACTGCCACTCCGATCTC 60.461 60.000 0.00 0.00 0.00 2.75
9490 10522 0.803768 CAACTGCCACTCCGATCTCG 60.804 60.000 0.00 0.00 39.44 4.04
9500 10532 2.180769 CGATCTCGGTGGACGCAA 59.819 61.111 0.00 0.00 43.86 4.85
9501 10533 1.445410 CGATCTCGGTGGACGCAAA 60.445 57.895 0.00 0.00 43.86 3.68
9502 10534 0.806102 CGATCTCGGTGGACGCAAAT 60.806 55.000 0.00 0.00 43.86 2.32
9503 10535 0.931005 GATCTCGGTGGACGCAAATC 59.069 55.000 0.00 0.00 43.86 2.17
9504 10536 0.462047 ATCTCGGTGGACGCAAATCC 60.462 55.000 0.00 0.00 43.86 3.01
9505 10537 1.375396 CTCGGTGGACGCAAATCCA 60.375 57.895 0.00 0.00 46.92 3.41
9509 10541 4.301505 TGGACGCAAATCCAGAGC 57.698 55.556 0.00 0.00 44.14 4.09
9516 10548 2.184385 GCAAATCCAGAGCGAATGTG 57.816 50.000 0.00 0.00 0.00 3.21
9517 10549 1.739466 GCAAATCCAGAGCGAATGTGA 59.261 47.619 0.00 0.00 0.00 3.58
9518 10550 2.476854 GCAAATCCAGAGCGAATGTGAC 60.477 50.000 0.00 0.00 0.00 3.67
9519 10551 2.029838 AATCCAGAGCGAATGTGACC 57.970 50.000 0.00 0.00 0.00 4.02
9520 10552 0.179100 ATCCAGAGCGAATGTGACCG 60.179 55.000 0.00 0.00 0.00 4.79
9521 10553 1.811266 CCAGAGCGAATGTGACCGG 60.811 63.158 0.00 0.00 0.00 5.28
9522 10554 2.125512 AGAGCGAATGTGACCGGC 60.126 61.111 0.00 0.00 0.00 6.13
9523 10555 3.195698 GAGCGAATGTGACCGGCC 61.196 66.667 0.00 0.00 0.00 6.13
9524 10556 3.950794 GAGCGAATGTGACCGGCCA 62.951 63.158 0.00 0.00 0.00 5.36
9525 10557 3.799755 GCGAATGTGACCGGCCAC 61.800 66.667 14.79 14.79 37.55 5.01
9526 10558 2.047274 CGAATGTGACCGGCCACT 60.047 61.111 22.07 1.90 37.89 4.00
9527 10559 1.216977 CGAATGTGACCGGCCACTA 59.783 57.895 22.07 8.84 37.89 2.74
9528 10560 1.082117 CGAATGTGACCGGCCACTAC 61.082 60.000 22.07 11.56 37.89 2.73
9529 10561 0.249398 GAATGTGACCGGCCACTACT 59.751 55.000 22.07 6.07 37.89 2.57
9530 10562 0.036388 AATGTGACCGGCCACTACTG 60.036 55.000 22.07 0.00 37.89 2.74
9531 10563 2.434359 GTGACCGGCCACTACTGC 60.434 66.667 14.36 0.00 34.38 4.40
9532 10564 2.920384 TGACCGGCCACTACTGCA 60.920 61.111 0.00 0.00 0.00 4.41
9533 10565 2.290287 TGACCGGCCACTACTGCAT 61.290 57.895 0.00 0.00 0.00 3.96
9534 10566 1.815421 GACCGGCCACTACTGCATG 60.815 63.158 0.00 0.00 0.00 4.06
9535 10567 2.268920 CCGGCCACTACTGCATGT 59.731 61.111 2.24 0.00 0.00 3.21
9536 10568 1.377202 CCGGCCACTACTGCATGTT 60.377 57.895 2.24 0.00 0.00 2.71
9537 10569 1.647545 CCGGCCACTACTGCATGTTG 61.648 60.000 2.24 0.00 0.00 3.33
9538 10570 1.647545 CGGCCACTACTGCATGTTGG 61.648 60.000 2.24 0.00 31.40 3.77
9539 10571 1.508088 GCCACTACTGCATGTTGGC 59.492 57.895 11.63 11.63 42.95 4.52
9540 10572 1.937546 GCCACTACTGCATGTTGGCC 61.938 60.000 14.76 0.00 43.36 5.36
9541 10573 1.647545 CCACTACTGCATGTTGGCCG 61.648 60.000 0.00 0.00 0.00 6.13
9542 10574 0.673333 CACTACTGCATGTTGGCCGA 60.673 55.000 0.00 0.00 0.00 5.54
9543 10575 0.036164 ACTACTGCATGTTGGCCGAA 59.964 50.000 0.00 0.00 0.00 4.30
9544 10576 0.447801 CTACTGCATGTTGGCCGAAC 59.552 55.000 0.00 2.38 34.84 3.95
9545 10577 1.295357 TACTGCATGTTGGCCGAACG 61.295 55.000 0.00 0.00 37.38 3.95
9546 10578 2.281139 TGCATGTTGGCCGAACGA 60.281 55.556 0.00 0.00 37.38 3.85
9547 10579 2.175811 GCATGTTGGCCGAACGAC 59.824 61.111 0.00 0.00 37.38 4.34
9548 10580 2.474266 CATGTTGGCCGAACGACG 59.526 61.111 0.00 0.00 37.38 5.12
9549 10581 3.419759 ATGTTGGCCGAACGACGC 61.420 61.111 0.00 0.00 41.07 5.19
9555 10587 3.475774 GCCGAACGACGCGACATT 61.476 61.111 15.93 0.00 41.07 2.71
9556 10588 2.687436 CCGAACGACGCGACATTC 59.313 61.111 15.93 10.78 41.07 2.67
9557 10589 2.084101 CCGAACGACGCGACATTCA 61.084 57.895 15.93 0.00 41.07 2.57
9558 10590 1.610715 CCGAACGACGCGACATTCAA 61.611 55.000 15.93 0.00 41.07 2.69
9559 10591 0.159973 CGAACGACGCGACATTCAAA 59.840 50.000 15.93 0.00 34.51 2.69
9560 10592 1.201769 CGAACGACGCGACATTCAAAT 60.202 47.619 15.93 0.00 34.51 2.32
9561 10593 2.720590 CGAACGACGCGACATTCAAATT 60.721 45.455 15.93 0.00 34.51 1.82
9562 10594 2.226262 ACGACGCGACATTCAAATTG 57.774 45.000 15.93 0.00 0.00 2.32
9563 10595 1.136085 ACGACGCGACATTCAAATTGG 60.136 47.619 15.93 0.00 0.00 3.16
9564 10596 1.136085 CGACGCGACATTCAAATTGGT 60.136 47.619 15.93 0.00 0.00 3.67
9565 10597 2.241722 GACGCGACATTCAAATTGGTG 58.758 47.619 15.93 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.263217 GCACTAACCGTCCAACAACTG 59.737 52.381 0.00 0.00 0.00 3.16
65 66 2.280186 CCCTAGCGGCATTCGTCC 60.280 66.667 1.45 0.00 41.72 4.79
121 122 1.069978 CAAACAACCGGCCAAAAGGAT 59.930 47.619 0.00 0.00 0.00 3.24
160 161 0.712222 GTACTACGGCACAAGCGTTC 59.288 55.000 0.00 0.00 43.41 3.95
172 173 4.197498 CCCGCCCGGTGTACTACG 62.197 72.222 0.00 0.00 0.00 3.51
266 273 3.894427 CCTCCTCTCATCCGGGATATATG 59.106 52.174 9.68 0.00 0.00 1.78
267 274 3.692772 GCCTCCTCTCATCCGGGATATAT 60.693 52.174 9.68 0.00 0.00 0.86
268 275 2.358300 GCCTCCTCTCATCCGGGATATA 60.358 54.545 9.68 0.01 0.00 0.86
269 276 1.621072 GCCTCCTCTCATCCGGGATAT 60.621 57.143 9.68 0.00 0.00 1.63
270 277 0.251832 GCCTCCTCTCATCCGGGATA 60.252 60.000 9.68 0.00 0.00 2.59
279 286 2.048222 CGCGTTTGCCTCCTCTCA 60.048 61.111 0.00 0.00 38.08 3.27
535 550 3.809775 TTGCTTATGCGTGCGGGC 61.810 61.111 0.00 0.00 43.34 6.13
582 605 2.746277 GTGGGTGTGGCGATGGAC 60.746 66.667 0.00 0.00 0.00 4.02
652 680 2.985847 GCCCACAGTTCCAGCCAC 60.986 66.667 0.00 0.00 0.00 5.01
655 1001 1.968540 GTGAGCCCACAGTTCCAGC 60.969 63.158 0.00 0.00 42.72 4.85
783 1149 4.971125 GCGGCCGTCCCTATCTGC 62.971 72.222 28.70 0.77 0.00 4.26
798 1164 3.157949 GAGGAGGAGGAAGGGGCG 61.158 72.222 0.00 0.00 0.00 6.13
799 1165 1.764454 GAGAGGAGGAGGAAGGGGC 60.764 68.421 0.00 0.00 0.00 5.80
802 1168 1.456705 CGGGAGAGGAGGAGGAAGG 60.457 68.421 0.00 0.00 0.00 3.46
803 1169 1.456705 CCGGGAGAGGAGGAGGAAG 60.457 68.421 0.00 0.00 0.00 3.46
804 1170 2.690452 CCGGGAGAGGAGGAGGAA 59.310 66.667 0.00 0.00 0.00 3.36
807 1173 2.520741 GAGCCGGGAGAGGAGGAG 60.521 72.222 2.18 0.00 0.00 3.69
818 1184 2.125202 GAACAAAACCCACGAGCCGG 62.125 60.000 0.00 0.00 0.00 6.13
819 1185 1.281656 GAACAAAACCCACGAGCCG 59.718 57.895 0.00 0.00 0.00 5.52
844 1210 2.743928 CAACCCTCTGCGTCTGCC 60.744 66.667 0.00 0.00 41.78 4.85
845 1211 2.743928 CCAACCCTCTGCGTCTGC 60.744 66.667 0.00 0.00 43.20 4.26
847 1213 1.371558 GAACCAACCCTCTGCGTCT 59.628 57.895 0.00 0.00 0.00 4.18
849 1215 0.321653 GATGAACCAACCCTCTGCGT 60.322 55.000 0.00 0.00 0.00 5.24
850 1216 0.036010 AGATGAACCAACCCTCTGCG 60.036 55.000 0.00 0.00 0.00 5.18
852 1218 1.276421 ACGAGATGAACCAACCCTCTG 59.724 52.381 0.00 0.00 0.00 3.35
853 1219 1.550976 GACGAGATGAACCAACCCTCT 59.449 52.381 0.00 0.00 0.00 3.69
854 1220 1.736032 CGACGAGATGAACCAACCCTC 60.736 57.143 0.00 0.00 0.00 4.30
855 1221 0.246635 CGACGAGATGAACCAACCCT 59.753 55.000 0.00 0.00 0.00 4.34
856 1222 0.739813 CCGACGAGATGAACCAACCC 60.740 60.000 0.00 0.00 0.00 4.11
859 1225 1.201647 GAGTCCGACGAGATGAACCAA 59.798 52.381 0.00 0.00 0.00 3.67
861 1227 0.248134 CGAGTCCGACGAGATGAACC 60.248 60.000 0.00 0.00 38.22 3.62
863 1229 0.392060 TCCGAGTCCGACGAGATGAA 60.392 55.000 0.00 0.00 38.22 2.57
864 1230 0.392060 TTCCGAGTCCGACGAGATGA 60.392 55.000 0.00 0.00 38.22 2.92
865 1231 0.450583 TTTCCGAGTCCGACGAGATG 59.549 55.000 0.00 0.00 38.22 2.90
866 1232 0.450983 GTTTCCGAGTCCGACGAGAT 59.549 55.000 0.00 0.00 38.22 2.75
867 1233 0.604780 AGTTTCCGAGTCCGACGAGA 60.605 55.000 0.00 0.00 38.22 4.04
868 1234 0.454620 CAGTTTCCGAGTCCGACGAG 60.455 60.000 0.00 0.00 38.22 4.18
869 1235 1.577922 CAGTTTCCGAGTCCGACGA 59.422 57.895 0.00 0.00 38.22 4.20
870 1236 1.443872 CCAGTTTCCGAGTCCGACG 60.444 63.158 0.00 0.00 38.22 5.12
871 1237 1.737008 GCCAGTTTCCGAGTCCGAC 60.737 63.158 0.00 0.00 38.22 4.79
872 1238 2.654877 GCCAGTTTCCGAGTCCGA 59.345 61.111 0.00 0.00 38.22 4.55
873 1239 2.809601 CGCCAGTTTCCGAGTCCG 60.810 66.667 0.00 0.00 0.00 4.79
874 1240 2.434359 CCGCCAGTTTCCGAGTCC 60.434 66.667 0.00 0.00 0.00 3.85
875 1241 1.737008 GTCCGCCAGTTTCCGAGTC 60.737 63.158 0.00 0.00 0.00 3.36
876 1242 1.755393 AAGTCCGCCAGTTTCCGAGT 61.755 55.000 0.00 0.00 0.00 4.18
886 1252 4.424566 GTACGCCGAAGTCCGCCA 62.425 66.667 0.00 0.00 36.84 5.69
900 1266 1.737735 GTTGGGTGGGTACGCGTAC 60.738 63.158 35.42 35.42 42.23 3.67
901 1267 2.656055 GTTGGGTGGGTACGCGTA 59.344 61.111 16.41 16.41 42.23 4.42
902 1268 4.318949 GGTTGGGTGGGTACGCGT 62.319 66.667 19.17 19.17 42.23 6.01
927 1293 4.410400 GGGAAGTGAGGCGGGGTG 62.410 72.222 0.00 0.00 0.00 4.61
1002 1377 2.359011 GGGTTTGGGGGAATCGCT 59.641 61.111 0.00 0.00 0.00 4.93
1014 1389 1.005097 GGACGGTAATGGAAGGGGTTT 59.995 52.381 0.00 0.00 0.00 3.27
1062 1438 1.072965 CATGGGAAGGCTAGGCTTAGG 59.927 57.143 29.56 13.80 0.00 2.69
1063 1439 1.072965 CCATGGGAAGGCTAGGCTTAG 59.927 57.143 29.56 16.76 0.00 2.18
1064 1440 1.140312 CCATGGGAAGGCTAGGCTTA 58.860 55.000 29.56 16.18 0.00 3.09
1065 1441 1.925888 CCATGGGAAGGCTAGGCTT 59.074 57.895 29.86 29.86 0.00 4.35
1066 1442 3.666122 CCATGGGAAGGCTAGGCT 58.334 61.111 14.10 14.10 0.00 4.58
1248 1624 2.051166 GATCCTCCGCGCGTAGTC 60.051 66.667 29.95 13.17 0.00 2.59
1304 1680 3.941035 GTTTCGCGAAACGGAGGA 58.059 55.556 39.28 15.41 40.85 3.71
1316 1692 4.025647 ACTGAAGAAGAAAAGAGCGTTTCG 60.026 41.667 3.84 0.00 41.49 3.46
1317 1693 5.411083 ACTGAAGAAGAAAAGAGCGTTTC 57.589 39.130 1.44 1.44 37.70 2.78
1318 1694 5.819825 AACTGAAGAAGAAAAGAGCGTTT 57.180 34.783 0.00 0.00 0.00 3.60
1472 2127 5.882557 ACCTGATGGCTTTGAAATGTAGTAG 59.117 40.000 0.00 0.00 36.63 2.57
1473 2128 5.815581 ACCTGATGGCTTTGAAATGTAGTA 58.184 37.500 0.00 0.00 36.63 1.82
1474 2129 4.666512 ACCTGATGGCTTTGAAATGTAGT 58.333 39.130 0.00 0.00 36.63 2.73
1488 2143 6.704056 AATAATCCTACCCTAACCTGATGG 57.296 41.667 0.00 0.00 39.83 3.51
1493 2148 8.891501 CAAGGAATAATAATCCTACCCTAACCT 58.108 37.037 0.00 0.00 46.65 3.50
1568 2226 0.888619 AGTCACGGAATCGCAGAGAA 59.111 50.000 0.00 0.00 43.63 2.87
1569 2227 1.671328 CTAGTCACGGAATCGCAGAGA 59.329 52.381 0.00 0.00 43.63 3.10
1571 2229 1.460504 ACTAGTCACGGAATCGCAGA 58.539 50.000 0.00 0.00 45.75 4.26
1572 2230 2.279582 AACTAGTCACGGAATCGCAG 57.720 50.000 0.00 0.00 40.63 5.18
1638 2296 8.688151 ACAAGTCTGATAGTCAAATAGTCCTAC 58.312 37.037 0.00 0.00 0.00 3.18
1642 2300 8.764524 AACACAAGTCTGATAGTCAAATAGTC 57.235 34.615 0.00 0.00 0.00 2.59
2003 2710 5.297776 CAGAGAACCACAACAAGATTCAACT 59.702 40.000 0.00 0.00 0.00 3.16
2030 2737 0.322277 CCTCTGCAAGCTGTGATGGT 60.322 55.000 0.00 0.00 0.00 3.55
2125 2835 0.663153 GGAACATACAGATTGCGGCC 59.337 55.000 0.00 0.00 0.00 6.13
2161 2872 8.738645 AATAAGGATGGACTTTGAGTTCATAC 57.261 34.615 3.75 3.75 44.24 2.39
2304 3015 3.629142 AATACTAGCCACAAGGACCAC 57.371 47.619 0.00 0.00 36.89 4.16
2355 3066 7.393234 AGCAATTCCAGCTATACAAGTACAAAA 59.607 33.333 0.00 0.00 41.32 2.44
2427 3138 5.064707 AGGAAACATTTATGACACGATTCCG 59.935 40.000 0.00 0.00 38.98 4.30
2431 3142 6.112734 TGCTAGGAAACATTTATGACACGAT 58.887 36.000 0.00 0.00 0.00 3.73
2606 3317 6.820335 TGAAGTATAGTATCTTGCAGTGCAT 58.180 36.000 20.50 6.80 38.76 3.96
2708 3419 5.941788 AGACACACTCCAATTCTTACCTTT 58.058 37.500 0.00 0.00 0.00 3.11
2851 3564 3.252554 AGTCCCCTCCTAGCTATTCAG 57.747 52.381 0.00 0.00 0.00 3.02
2852 3565 3.076182 CCTAGTCCCCTCCTAGCTATTCA 59.924 52.174 0.00 0.00 32.29 2.57
2931 3644 3.256704 AGATTCTTTGGTGGGAGGTGTA 58.743 45.455 0.00 0.00 0.00 2.90
2984 3697 5.060427 TGCTACCATTGGCCTTACAATAT 57.940 39.130 3.32 0.00 38.94 1.28
3086 3800 7.615365 TGCTTCCAACTCCAATTTACAAGATAT 59.385 33.333 0.00 0.00 0.00 1.63
3087 3801 6.945435 TGCTTCCAACTCCAATTTACAAGATA 59.055 34.615 0.00 0.00 0.00 1.98
3088 3802 5.774690 TGCTTCCAACTCCAATTTACAAGAT 59.225 36.000 0.00 0.00 0.00 2.40
3089 3803 5.136828 TGCTTCCAACTCCAATTTACAAGA 58.863 37.500 0.00 0.00 0.00 3.02
3093 3807 4.518970 TCACTGCTTCCAACTCCAATTTAC 59.481 41.667 0.00 0.00 0.00 2.01
3138 3852 1.342374 GGCAAGGGAGATTGGAATGGT 60.342 52.381 0.00 0.00 0.00 3.55
3164 3878 0.837940 GATGGGGTCTAGTGGTTCCC 59.162 60.000 0.00 0.00 39.22 3.97
3228 3942 2.203938 AGGTTCGAGGCTCCCCAA 60.204 61.111 9.32 0.00 0.00 4.12
3410 4208 2.641815 GGAGAATGCATATCAGGGAGGT 59.358 50.000 0.00 0.00 0.00 3.85
3417 4215 2.224523 GGGAACCGGAGAATGCATATCA 60.225 50.000 9.46 0.00 40.86 2.15
3446 4244 2.635229 ATCCAGAGGATGCGTGTCGC 62.635 60.000 7.20 7.20 41.43 5.19
3472 4270 6.627087 ATGACAATGGAAGTTAAGAGGAGA 57.373 37.500 0.00 0.00 0.00 3.71
3551 4349 3.089788 CATATCTGCAGCAGCCACA 57.910 52.632 18.43 0.01 41.13 4.17
3656 4454 8.229137 ACAGAAACACAAAAATGATTGTTGTTG 58.771 29.630 10.89 9.12 41.44 3.33
3705 4503 3.886505 AGACAAAAATGTTAGGCGGAACA 59.113 39.130 9.89 9.89 43.23 3.18
3730 4528 3.549299 AAGCTGCATCTCAAAAGTTCG 57.451 42.857 1.02 0.00 0.00 3.95
3731 4529 5.118642 AGAAAGCTGCATCTCAAAAGTTC 57.881 39.130 1.02 0.00 0.00 3.01
4019 4818 4.061131 TCCCAGACTTCTGTCCAGAATA 57.939 45.455 9.99 0.00 45.40 1.75
4074 4873 6.591448 GGATTTGTTAAAAGAGATGCAAAGGG 59.409 38.462 0.00 0.00 30.89 3.95
4079 4878 6.267471 ACCAAGGATTTGTTAAAAGAGATGCA 59.733 34.615 0.00 0.00 32.21 3.96
4137 4945 3.817647 ACTGCATCAGAAGGAAGAAACAC 59.182 43.478 0.29 0.00 35.18 3.32
4215 5023 2.557555 ATGAGTCTGACCTGGATGGA 57.442 50.000 0.00 0.00 39.71 3.41
4295 5103 0.322975 GCTCAAGGAAGGAGACTGCA 59.677 55.000 0.00 0.00 42.68 4.41
4360 5168 0.949397 CTGAAGCAGAACAGCAAGCA 59.051 50.000 0.00 0.00 36.85 3.91
4699 5507 6.213397 TGTCTGAGATAAGTCATTCCTTCCAA 59.787 38.462 0.00 0.00 0.00 3.53
4912 5720 8.150945 GGTGATAACTCTGCCAAGAAATAGATA 58.849 37.037 0.00 0.00 30.03 1.98
5048 5856 1.888512 TGGAGGTGCAGATGCTTTTTC 59.111 47.619 6.35 0.00 42.66 2.29
5232 6040 8.060931 TGCTAAAGGCAAACAATATATGTTCA 57.939 30.769 0.00 0.00 46.91 3.18
5270 6078 4.277515 ACTTCATGTACACATCAGCACT 57.722 40.909 0.00 0.00 33.61 4.40
5326 6134 4.664150 AACAAAACCCTACATGTGTTGG 57.336 40.909 9.11 8.54 35.64 3.77
5327 6135 5.655488 TCAAACAAAACCCTACATGTGTTG 58.345 37.500 9.11 5.76 37.05 3.33
5332 6140 5.766150 TCACTCAAACAAAACCCTACATG 57.234 39.130 0.00 0.00 0.00 3.21
5377 6185 6.016777 CCTCGCCAGCAAAGAAATATAGAAAT 60.017 38.462 0.00 0.00 0.00 2.17
5417 6225 8.219769 CGCTGCACAATAATAAAATGTCAAAAA 58.780 29.630 0.00 0.00 0.00 1.94
5418 6226 7.596621 TCGCTGCACAATAATAAAATGTCAAAA 59.403 29.630 0.00 0.00 0.00 2.44
5616 6424 1.301293 GGACCAAGGAAGGGCTGAG 59.699 63.158 0.00 0.00 36.69 3.35
5671 6479 7.792364 TTTCTCTTCCTCCTTGTAAGACATA 57.208 36.000 0.00 0.00 0.00 2.29
5674 6482 6.526526 ACTTTTCTCTTCCTCCTTGTAAGAC 58.473 40.000 0.00 0.00 0.00 3.01
6004 6812 9.848710 CCATGGATAGAGCTCAATATATTTGAT 57.151 33.333 17.77 0.00 0.00 2.57
6067 6875 7.067129 AGTGAAGTTCCAGTTAACTTTTCCTTC 59.933 37.037 18.82 18.82 46.92 3.46
6130 6938 3.134804 CCCCTGATAGATCCGACAAGTTT 59.865 47.826 0.00 0.00 0.00 2.66
6340 7148 5.739752 TCATTCCATTCGTTTCAGCATAG 57.260 39.130 0.00 0.00 0.00 2.23
6481 7289 5.409520 TGAATCAGCAATATAAGATGGCGAC 59.590 40.000 0.00 0.00 0.00 5.19
6637 7445 3.821033 GTTTACTGAACACAGGAATGCCT 59.179 43.478 0.00 0.00 40.80 4.75
6744 7713 8.967918 ACTGTATTTCCCTTTTTAATCCTAAGC 58.032 33.333 0.00 0.00 0.00 3.09
6762 7732 7.747357 CGCTTACCGAAACAATAAACTGTATTT 59.253 33.333 0.00 0.00 40.02 1.40
6767 7737 4.399978 CCGCTTACCGAAACAATAAACTG 58.600 43.478 0.00 0.00 40.02 3.16
6806 7776 7.765307 AGGAATGTAGCAATACATGTTTTCTG 58.235 34.615 2.30 0.00 40.26 3.02
6983 7953 3.517602 GCAAGGGACAAAACTTCGTTTT 58.482 40.909 0.00 0.00 45.06 2.43
7052 8022 0.817013 CACCAATTCCCAATGACCGG 59.183 55.000 0.00 0.00 0.00 5.28
7070 8040 6.437477 AGCGAGTATATCCATTTAGACCATCA 59.563 38.462 0.00 0.00 0.00 3.07
7093 8063 4.634184 TCAGTCGTCTTCATACCTAAGC 57.366 45.455 0.00 0.00 0.00 3.09
7266 8236 4.019174 ACTTCAGGTGGCTGATATTTTGG 58.981 43.478 0.00 0.00 32.91 3.28
7325 8295 2.609002 GCTTTGGTTTCTTGCCAAGTTG 59.391 45.455 4.04 0.00 45.47 3.16
7340 8310 2.839486 TAGGAGTGTCACAGCTTTGG 57.161 50.000 5.62 0.00 0.00 3.28
7375 8345 1.064952 GCTCAGAGGCTAGTCTTCGAC 59.935 57.143 0.00 0.00 0.00 4.20
7405 8375 3.626670 CCTTCCTCTTATGCTGCTTTGAG 59.373 47.826 0.00 6.28 0.00 3.02
7417 8387 3.179902 TCGAGAAACCCCTTCCTCTTA 57.820 47.619 0.00 0.00 34.21 2.10
7459 8429 6.919662 GTGCCCACTGTGATTATCATATTTTG 59.080 38.462 9.86 0.00 0.00 2.44
7463 8433 4.507335 GGGTGCCCACTGTGATTATCATAT 60.507 45.833 9.86 0.00 35.81 1.78
7488 8458 8.169977 TGCTTTGTATCTCTCACAAAAGAATT 57.830 30.769 2.67 0.00 43.31 2.17
7594 8564 7.337942 TGAAAACATTTGGCATTGGTTTAGTTT 59.662 29.630 12.31 2.92 33.08 2.66
7638 8608 2.052782 AGCATCCGTTGGTTATTCCC 57.947 50.000 0.00 0.00 29.87 3.97
7686 8656 4.044065 ACAATATCCTTTTGTGACAGGGGA 59.956 41.667 5.91 5.91 36.02 4.81
7687 8657 4.344104 ACAATATCCTTTTGTGACAGGGG 58.656 43.478 0.00 0.00 36.02 4.79
7702 8672 4.037208 CCAAGGCACCAGATTGACAATATC 59.963 45.833 0.00 0.00 0.00 1.63
7708 8678 1.003580 TCTCCAAGGCACCAGATTGAC 59.996 52.381 0.00 0.00 0.00 3.18
7718 8688 0.179020 CTGGTTGTGTCTCCAAGGCA 60.179 55.000 0.00 0.00 33.06 4.75
7733 8703 7.213178 ACCAAACTCAATAATCCTATCTGGT 57.787 36.000 0.00 0.00 37.07 4.00
7757 8727 4.827284 GTCAATGAGAAAGGACCCAAAGAA 59.173 41.667 0.00 0.00 0.00 2.52
7766 8736 4.107072 AGGGAGATGTCAATGAGAAAGGA 58.893 43.478 0.00 0.00 0.00 3.36
7775 8745 3.848975 ACTTTGGAGAGGGAGATGTCAAT 59.151 43.478 0.00 0.00 0.00 2.57
7790 8760 2.306847 GAGGCCTTGTTTGACTTTGGA 58.693 47.619 6.77 0.00 0.00 3.53
7811 8781 1.518056 CGTCTGCACATGCCTTTGGT 61.518 55.000 0.49 0.00 41.18 3.67
7832 8802 1.394917 CTCTGTAACGCCAATGCAGAC 59.605 52.381 0.00 0.00 35.09 3.51
7863 8833 0.825840 TACCTGCTTTGGGTTGCACC 60.826 55.000 0.00 0.00 38.19 5.01
7885 8855 6.808008 TTTTGCTCTGTAAGATCCTTTGAG 57.192 37.500 0.00 0.00 45.62 3.02
7920 8890 5.371526 TCTAGCATATTTCAAGGCTGAAGG 58.628 41.667 0.00 0.00 42.48 3.46
7924 8895 4.712476 ACCTCTAGCATATTTCAAGGCTG 58.288 43.478 0.00 0.00 37.17 4.85
8028 8999 8.786826 TCCGTCTCATAATGTAAGACATTTTT 57.213 30.769 9.92 0.00 45.80 1.94
8029 9000 7.495934 CCTCCGTCTCATAATGTAAGACATTTT 59.504 37.037 9.92 0.33 45.80 1.82
8030 9001 6.986817 CCTCCGTCTCATAATGTAAGACATTT 59.013 38.462 9.92 0.00 45.80 2.32
8032 9003 5.011125 CCCTCCGTCTCATAATGTAAGACAT 59.989 44.000 0.00 0.00 41.31 3.06
8033 9004 4.341235 CCCTCCGTCTCATAATGTAAGACA 59.659 45.833 0.00 0.00 39.49 3.41
8034 9005 4.583489 TCCCTCCGTCTCATAATGTAAGAC 59.417 45.833 0.00 0.00 36.82 3.01
8035 9006 4.800023 TCCCTCCGTCTCATAATGTAAGA 58.200 43.478 0.00 0.00 0.00 2.10
8036 9007 4.585162 ACTCCCTCCGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
8037 9008 4.543689 ACTCCCTCCGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
8038 9009 4.180377 ACTCCCTCCGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
8039 9010 3.033659 ACTCCCTCCGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
8040 9011 4.145807 ACTACTCCCTCCGTCTCATAATG 58.854 47.826 0.00 0.00 0.00 1.90
8041 9012 4.456662 ACTACTCCCTCCGTCTCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
8042 9013 3.947612 ACTACTCCCTCCGTCTCATAA 57.052 47.619 0.00 0.00 0.00 1.90
8043 9014 5.579753 ATTACTACTCCCTCCGTCTCATA 57.420 43.478 0.00 0.00 0.00 2.15
8044 9015 3.947612 TTACTACTCCCTCCGTCTCAT 57.052 47.619 0.00 0.00 0.00 2.90
8045 9016 3.947612 ATTACTACTCCCTCCGTCTCA 57.052 47.619 0.00 0.00 0.00 3.27
8046 9017 4.401837 ACAAATTACTACTCCCTCCGTCTC 59.598 45.833 0.00 0.00 0.00 3.36
8047 9018 4.159879 CACAAATTACTACTCCCTCCGTCT 59.840 45.833 0.00 0.00 0.00 4.18
8048 9019 4.081807 ACACAAATTACTACTCCCTCCGTC 60.082 45.833 0.00 0.00 0.00 4.79
8049 9020 3.836562 ACACAAATTACTACTCCCTCCGT 59.163 43.478 0.00 0.00 0.00 4.69
8050 9021 4.467198 ACACAAATTACTACTCCCTCCG 57.533 45.455 0.00 0.00 0.00 4.63
8051 9022 8.803397 AATAAACACAAATTACTACTCCCTCC 57.197 34.615 0.00 0.00 0.00 4.30
8151 9123 1.909302 AGTACAGGGTCAATGGACTGG 59.091 52.381 0.00 0.00 40.42 4.00
8217 9189 4.282449 TCTGTAAAATCCTGACGACCTGAA 59.718 41.667 0.00 0.00 0.00 3.02
8249 9221 0.951040 GTGGTGGGAACTGCTCTTCG 60.951 60.000 0.00 0.00 0.00 3.79
8307 9279 8.613060 TTGCTCCTAGTTAAATGATGATCATC 57.387 34.615 25.91 25.91 35.76 2.92
8404 9377 1.148310 AGAAACGCAAGGTGTCGATG 58.852 50.000 0.00 0.00 46.39 3.84
8424 9397 5.186409 ACCTTTACCTATAGACACGAAAGCA 59.814 40.000 0.00 0.00 0.00 3.91
8510 9483 7.769044 TCTTTCTCCGATTTTACCCATTTCTAG 59.231 37.037 0.00 0.00 0.00 2.43
8702 9681 3.313803 TGTCATTTCAGCGCAAGTTACAA 59.686 39.130 11.47 0.00 41.68 2.41
8703 9682 2.875317 TGTCATTTCAGCGCAAGTTACA 59.125 40.909 11.47 1.76 41.68 2.41
8704 9683 3.536158 TGTCATTTCAGCGCAAGTTAC 57.464 42.857 11.47 0.00 41.68 2.50
8705 9684 4.215185 TGAATGTCATTTCAGCGCAAGTTA 59.785 37.500 11.47 0.00 32.93 2.24
8706 9685 3.004629 TGAATGTCATTTCAGCGCAAGTT 59.995 39.130 11.47 0.00 32.93 2.66
8707 9686 2.553602 TGAATGTCATTTCAGCGCAAGT 59.446 40.909 11.47 0.00 32.93 3.16
8708 9687 3.206034 TGAATGTCATTTCAGCGCAAG 57.794 42.857 11.47 0.72 32.07 4.01
8733 9712 5.850557 TGATGAATTTTTCACCAGTGTGT 57.149 34.783 0.00 0.00 43.48 3.72
8737 9716 9.426837 CATAACATTGATGAATTTTTCACCAGT 57.573 29.630 0.00 0.00 43.48 4.00
8792 9772 3.420300 TCTCACTTGACTAGTCTCCGT 57.580 47.619 23.01 13.90 33.85 4.69
8795 9775 6.128227 ACACGTTATCTCACTTGACTAGTCTC 60.128 42.308 23.01 0.00 33.85 3.36
8796 9776 5.706369 ACACGTTATCTCACTTGACTAGTCT 59.294 40.000 23.01 0.58 33.85 3.24
8797 9777 5.940595 ACACGTTATCTCACTTGACTAGTC 58.059 41.667 16.32 16.32 33.85 2.59
8798 9778 5.961396 ACACGTTATCTCACTTGACTAGT 57.039 39.130 0.00 0.00 37.68 2.57
8799 9779 7.749808 TCTTACACGTTATCTCACTTGACTAG 58.250 38.462 0.00 0.00 0.00 2.57
8875 9867 6.109359 ACTTGGTTATGTCTAAGTCAGATGC 58.891 40.000 0.00 0.00 34.87 3.91
8882 9874 6.919775 ACAGAGACTTGGTTATGTCTAAGT 57.080 37.500 0.00 0.00 40.30 2.24
8883 9875 7.329717 GTCAACAGAGACTTGGTTATGTCTAAG 59.670 40.741 0.00 0.00 40.30 2.18
8886 9878 5.511545 GGTCAACAGAGACTTGGTTATGTCT 60.512 44.000 0.00 0.00 42.18 3.41
8887 9879 4.691216 GGTCAACAGAGACTTGGTTATGTC 59.309 45.833 0.00 0.00 38.57 3.06
8888 9880 4.642429 GGTCAACAGAGACTTGGTTATGT 58.358 43.478 0.00 0.00 38.57 2.29
8889 9881 3.679980 CGGTCAACAGAGACTTGGTTATG 59.320 47.826 0.00 0.00 38.57 1.90
8890 9882 3.864921 GCGGTCAACAGAGACTTGGTTAT 60.865 47.826 0.00 0.00 38.57 1.89
8891 9883 2.547218 GCGGTCAACAGAGACTTGGTTA 60.547 50.000 0.00 0.00 38.57 2.85
8892 9884 1.810412 GCGGTCAACAGAGACTTGGTT 60.810 52.381 0.00 0.00 38.57 3.67
8893 9885 0.249911 GCGGTCAACAGAGACTTGGT 60.250 55.000 0.00 0.00 38.57 3.67
8894 9886 0.249868 TGCGGTCAACAGAGACTTGG 60.250 55.000 0.00 0.00 38.57 3.61
8895 9887 1.581934 TTGCGGTCAACAGAGACTTG 58.418 50.000 0.00 0.00 38.57 3.16
8896 9888 2.550830 ATTGCGGTCAACAGAGACTT 57.449 45.000 0.00 0.00 38.57 3.01
8897 9889 2.550830 AATTGCGGTCAACAGAGACT 57.449 45.000 0.00 0.00 38.57 3.24
8898 9890 3.424962 GCTAAATTGCGGTCAACAGAGAC 60.425 47.826 0.00 0.00 34.60 3.36
8899 9891 2.742053 GCTAAATTGCGGTCAACAGAGA 59.258 45.455 0.00 0.00 34.60 3.10
8900 9892 2.483877 TGCTAAATTGCGGTCAACAGAG 59.516 45.455 0.00 0.00 34.60 3.35
8901 9893 2.499197 TGCTAAATTGCGGTCAACAGA 58.501 42.857 0.00 0.00 34.60 3.41
8902 9894 2.987413 TGCTAAATTGCGGTCAACAG 57.013 45.000 0.00 0.00 34.60 3.16
8908 9900 4.782019 TTCAATCTTGCTAAATTGCGGT 57.218 36.364 0.00 0.00 33.76 5.68
8979 9971 7.339976 TCAATGTTGCTAAATTCATCTGGATGA 59.660 33.333 8.96 8.96 45.30 2.92
8980 9972 7.485810 TCAATGTTGCTAAATTCATCTGGATG 58.514 34.615 4.36 4.36 40.09 3.51
8981 9973 7.649533 TCAATGTTGCTAAATTCATCTGGAT 57.350 32.000 0.00 0.00 0.00 3.41
8982 9974 7.465353 TTCAATGTTGCTAAATTCATCTGGA 57.535 32.000 0.00 0.00 0.00 3.86
8983 9975 8.537049 TTTTCAATGTTGCTAAATTCATCTGG 57.463 30.769 0.00 0.00 0.00 3.86
9092 10085 3.809279 TGTGTAGCAACAGTTGAGACATG 59.191 43.478 17.99 0.00 35.91 3.21
9093 10086 4.071961 TGTGTAGCAACAGTTGAGACAT 57.928 40.909 17.99 0.00 35.91 3.06
9137 10153 1.737793 AGCAATACCGAAAAGCCGAAG 59.262 47.619 0.00 0.00 0.00 3.79
9138 10154 1.816074 AGCAATACCGAAAAGCCGAA 58.184 45.000 0.00 0.00 0.00 4.30
9139 10155 2.676632 TAGCAATACCGAAAAGCCGA 57.323 45.000 0.00 0.00 0.00 5.54
9140 10156 2.031683 CCTTAGCAATACCGAAAAGCCG 59.968 50.000 0.00 0.00 0.00 5.52
9141 10157 2.357952 CCCTTAGCAATACCGAAAAGCC 59.642 50.000 0.00 0.00 0.00 4.35
9142 10158 2.223502 GCCCTTAGCAATACCGAAAAGC 60.224 50.000 0.00 0.00 42.97 3.51
9143 10159 3.692791 GCCCTTAGCAATACCGAAAAG 57.307 47.619 0.00 0.00 42.97 2.27
9155 10171 0.881796 GTTGGAGTTGTGCCCTTAGC 59.118 55.000 0.00 0.00 44.14 3.09
9175 10191 2.578128 GGCATTTTGGCGCATGGA 59.422 55.556 10.83 0.00 31.79 3.41
9183 10199 1.673626 GCATGGTGTGAGGCATTTTGG 60.674 52.381 0.00 0.00 0.00 3.28
9196 10212 2.299993 AGTATCGACACTGCATGGTG 57.700 50.000 0.00 4.64 42.34 4.17
9198 10214 4.406069 CAAAAAGTATCGACACTGCATGG 58.594 43.478 0.00 0.00 0.00 3.66
9199 10215 3.848019 GCAAAAAGTATCGACACTGCATG 59.152 43.478 0.00 0.00 0.00 4.06
9225 10249 7.114866 ACATTTAATGGATGCATGACATTGA 57.885 32.000 25.36 18.85 39.84 2.57
9226 10250 7.306341 CGAACATTTAATGGATGCATGACATTG 60.306 37.037 25.36 16.73 39.84 2.82
9231 10255 4.097589 TGCGAACATTTAATGGATGCATGA 59.902 37.500 2.46 0.00 32.36 3.07
9233 10257 4.652421 TGCGAACATTTAATGGATGCAT 57.348 36.364 9.88 0.00 32.36 3.96
9242 10273 7.402640 GGTTTCAAACATTTGCGAACATTTAA 58.597 30.769 17.45 0.00 38.05 1.52
9250 10281 1.757118 TGGGGTTTCAAACATTTGCGA 59.243 42.857 1.93 0.00 38.05 5.10
9306 10337 1.517361 CTACATGACGCAGCCCAGA 59.483 57.895 0.00 0.00 0.00 3.86
9311 10342 2.025359 GAACGCCTACATGACGCAGC 62.025 60.000 0.00 0.00 0.00 5.25
9314 10346 1.515519 TCGAACGCCTACATGACGC 60.516 57.895 0.00 0.00 0.00 5.19
9316 10348 1.705256 TTGTCGAACGCCTACATGAC 58.295 50.000 0.00 0.00 0.00 3.06
9323 10355 1.405121 GGTCCTAATTGTCGAACGCCT 60.405 52.381 0.00 0.00 0.00 5.52
9326 10358 1.997606 GTGGGTCCTAATTGTCGAACG 59.002 52.381 0.00 0.00 0.00 3.95
9345 10377 5.765182 CAGAACAAGAGATAGGGTTTTGTGT 59.235 40.000 0.00 0.00 32.75 3.72
9346 10378 5.335191 GCAGAACAAGAGATAGGGTTTTGTG 60.335 44.000 0.00 0.00 32.75 3.33
9350 10382 4.323868 GGAGCAGAACAAGAGATAGGGTTT 60.324 45.833 0.00 0.00 0.00 3.27
9359 10391 1.534595 GCAGTTGGAGCAGAACAAGAG 59.465 52.381 0.00 0.00 0.00 2.85
9361 10393 0.595095 GGCAGTTGGAGCAGAACAAG 59.405 55.000 0.00 0.00 0.00 3.16
9363 10395 0.106769 TTGGCAGTTGGAGCAGAACA 60.107 50.000 0.00 0.00 0.00 3.18
9367 10399 0.032540 GGTTTTGGCAGTTGGAGCAG 59.967 55.000 0.00 0.00 0.00 4.24
9368 10400 1.733402 CGGTTTTGGCAGTTGGAGCA 61.733 55.000 0.00 0.00 0.00 4.26
9377 10409 3.503839 ACCTCCCCGGTTTTGGCA 61.504 61.111 0.00 0.00 46.37 4.92
9389 10421 4.699522 AGACGCCCGCAAACCTCC 62.700 66.667 0.00 0.00 0.00 4.30
9390 10422 3.423154 CAGACGCCCGCAAACCTC 61.423 66.667 0.00 0.00 0.00 3.85
9402 10434 2.557059 TACATGACGCAGCCCAGACG 62.557 60.000 0.00 0.00 0.00 4.18
9403 10435 0.807667 CTACATGACGCAGCCCAGAC 60.808 60.000 0.00 0.00 0.00 3.51
9404 10436 1.517361 CTACATGACGCAGCCCAGA 59.483 57.895 0.00 0.00 0.00 3.86
9405 10437 1.522355 CCTACATGACGCAGCCCAG 60.522 63.158 0.00 0.00 0.00 4.45
9406 10438 2.584064 CCTACATGACGCAGCCCA 59.416 61.111 0.00 0.00 0.00 5.36
9407 10439 2.897350 GCCTACATGACGCAGCCC 60.897 66.667 0.00 0.00 0.00 5.19
9408 10440 3.264897 CGCCTACATGACGCAGCC 61.265 66.667 0.00 0.00 0.00 4.85
9409 10441 2.025359 GAACGCCTACATGACGCAGC 62.025 60.000 0.00 0.00 0.00 5.25
9410 10442 1.742900 CGAACGCCTACATGACGCAG 61.743 60.000 0.00 0.00 0.00 5.18
9411 10443 1.803922 CGAACGCCTACATGACGCA 60.804 57.895 0.00 0.00 0.00 5.24
9412 10444 1.515519 TCGAACGCCTACATGACGC 60.516 57.895 0.00 0.00 0.00 5.19
9413 10445 0.455464 TGTCGAACGCCTACATGACG 60.455 55.000 0.00 0.00 0.00 4.35
9414 10446 1.705256 TTGTCGAACGCCTACATGAC 58.295 50.000 0.00 0.00 0.00 3.06
9415 10447 2.665649 ATTGTCGAACGCCTACATGA 57.334 45.000 0.00 0.00 0.00 3.07
9416 10448 3.245284 CCTAATTGTCGAACGCCTACATG 59.755 47.826 0.00 0.00 0.00 3.21
9417 10449 3.131577 TCCTAATTGTCGAACGCCTACAT 59.868 43.478 0.00 0.00 0.00 2.29
9418 10450 2.492881 TCCTAATTGTCGAACGCCTACA 59.507 45.455 0.00 0.00 0.00 2.74
9419 10451 2.856557 GTCCTAATTGTCGAACGCCTAC 59.143 50.000 0.00 0.00 0.00 3.18
9420 10452 2.159198 GGTCCTAATTGTCGAACGCCTA 60.159 50.000 0.00 0.00 0.00 3.93
9421 10453 1.405121 GGTCCTAATTGTCGAACGCCT 60.405 52.381 0.00 0.00 0.00 5.52
9422 10454 1.004595 GGTCCTAATTGTCGAACGCC 58.995 55.000 0.00 0.00 0.00 5.68
9423 10455 1.004595 GGGTCCTAATTGTCGAACGC 58.995 55.000 0.00 0.00 0.00 4.84
9424 10456 1.997606 GTGGGTCCTAATTGTCGAACG 59.002 52.381 0.00 0.00 0.00 3.95
9425 10457 2.740447 GTGTGGGTCCTAATTGTCGAAC 59.260 50.000 0.00 0.00 0.00 3.95
9426 10458 2.369203 TGTGTGGGTCCTAATTGTCGAA 59.631 45.455 0.00 0.00 0.00 3.71
9427 10459 1.972075 TGTGTGGGTCCTAATTGTCGA 59.028 47.619 0.00 0.00 0.00 4.20
9428 10460 2.465860 TGTGTGGGTCCTAATTGTCG 57.534 50.000 0.00 0.00 0.00 4.35
9429 10461 4.261867 GGTTTTGTGTGGGTCCTAATTGTC 60.262 45.833 0.00 0.00 0.00 3.18
9430 10462 3.639561 GGTTTTGTGTGGGTCCTAATTGT 59.360 43.478 0.00 0.00 0.00 2.71
9431 10463 3.006430 GGGTTTTGTGTGGGTCCTAATTG 59.994 47.826 0.00 0.00 0.00 2.32
9432 10464 3.116900 AGGGTTTTGTGTGGGTCCTAATT 60.117 43.478 0.00 0.00 0.00 1.40
9433 10465 2.449345 AGGGTTTTGTGTGGGTCCTAAT 59.551 45.455 0.00 0.00 0.00 1.73
9434 10466 1.854280 AGGGTTTTGTGTGGGTCCTAA 59.146 47.619 0.00 0.00 0.00 2.69
9435 10467 1.525175 AGGGTTTTGTGTGGGTCCTA 58.475 50.000 0.00 0.00 0.00 2.94
9436 10468 1.525175 TAGGGTTTTGTGTGGGTCCT 58.475 50.000 0.00 0.00 0.00 3.85
9437 10469 2.041216 AGATAGGGTTTTGTGTGGGTCC 59.959 50.000 0.00 0.00 0.00 4.46
9438 10470 3.009143 AGAGATAGGGTTTTGTGTGGGTC 59.991 47.826 0.00 0.00 0.00 4.46
9439 10471 2.986728 AGAGATAGGGTTTTGTGTGGGT 59.013 45.455 0.00 0.00 0.00 4.51
9440 10472 3.721087 AGAGATAGGGTTTTGTGTGGG 57.279 47.619 0.00 0.00 0.00 4.61
9441 10473 4.398319 ACAAGAGATAGGGTTTTGTGTGG 58.602 43.478 0.00 0.00 31.34 4.17
9442 10474 5.765182 AGAACAAGAGATAGGGTTTTGTGTG 59.235 40.000 0.00 0.00 32.75 3.82
9443 10475 5.765182 CAGAACAAGAGATAGGGTTTTGTGT 59.235 40.000 0.00 0.00 32.75 3.72
9444 10476 5.335191 GCAGAACAAGAGATAGGGTTTTGTG 60.335 44.000 0.00 0.00 32.75 3.33
9445 10477 4.762251 GCAGAACAAGAGATAGGGTTTTGT 59.238 41.667 0.00 0.00 33.73 2.83
9446 10478 5.006386 AGCAGAACAAGAGATAGGGTTTTG 58.994 41.667 0.00 0.00 0.00 2.44
9447 10479 5.248380 AGCAGAACAAGAGATAGGGTTTT 57.752 39.130 0.00 0.00 0.00 2.43
9448 10480 4.323868 GGAGCAGAACAAGAGATAGGGTTT 60.324 45.833 0.00 0.00 0.00 3.27
9449 10481 3.198853 GGAGCAGAACAAGAGATAGGGTT 59.801 47.826 0.00 0.00 0.00 4.11
9450 10482 2.769095 GGAGCAGAACAAGAGATAGGGT 59.231 50.000 0.00 0.00 0.00 4.34
9451 10483 2.768527 TGGAGCAGAACAAGAGATAGGG 59.231 50.000 0.00 0.00 0.00 3.53
9452 10484 4.081198 AGTTGGAGCAGAACAAGAGATAGG 60.081 45.833 0.00 0.00 0.00 2.57
9453 10485 4.869297 CAGTTGGAGCAGAACAAGAGATAG 59.131 45.833 0.00 0.00 0.00 2.08
9454 10486 4.825422 CAGTTGGAGCAGAACAAGAGATA 58.175 43.478 0.00 0.00 0.00 1.98
9455 10487 3.672808 CAGTTGGAGCAGAACAAGAGAT 58.327 45.455 0.00 0.00 0.00 2.75
9456 10488 2.808202 GCAGTTGGAGCAGAACAAGAGA 60.808 50.000 0.00 0.00 0.00 3.10
9457 10489 1.534595 GCAGTTGGAGCAGAACAAGAG 59.465 52.381 0.00 0.00 0.00 2.85
9458 10490 1.597742 GCAGTTGGAGCAGAACAAGA 58.402 50.000 0.00 0.00 0.00 3.02
9459 10491 0.595095 GGCAGTTGGAGCAGAACAAG 59.405 55.000 0.00 0.00 0.00 3.16
9460 10492 0.106769 TGGCAGTTGGAGCAGAACAA 60.107 50.000 0.00 0.00 0.00 2.83
9461 10493 0.819259 GTGGCAGTTGGAGCAGAACA 60.819 55.000 0.00 0.00 0.00 3.18
9462 10494 0.536006 AGTGGCAGTTGGAGCAGAAC 60.536 55.000 0.00 0.00 0.00 3.01
9463 10495 0.250467 GAGTGGCAGTTGGAGCAGAA 60.250 55.000 0.00 0.00 0.00 3.02
9464 10496 1.372683 GAGTGGCAGTTGGAGCAGA 59.627 57.895 0.00 0.00 0.00 4.26
9465 10497 1.673665 GGAGTGGCAGTTGGAGCAG 60.674 63.158 0.00 0.00 0.00 4.24
9466 10498 2.431683 GGAGTGGCAGTTGGAGCA 59.568 61.111 0.00 0.00 0.00 4.26
9467 10499 2.527951 ATCGGAGTGGCAGTTGGAGC 62.528 60.000 0.00 0.00 0.00 4.70
9468 10500 0.460987 GATCGGAGTGGCAGTTGGAG 60.461 60.000 0.00 0.00 0.00 3.86
9469 10501 0.904865 AGATCGGAGTGGCAGTTGGA 60.905 55.000 0.00 0.00 0.00 3.53
9470 10502 0.460987 GAGATCGGAGTGGCAGTTGG 60.461 60.000 0.00 0.00 0.00 3.77
9471 10503 0.803768 CGAGATCGGAGTGGCAGTTG 60.804 60.000 0.00 0.00 35.37 3.16
9472 10504 1.513158 CGAGATCGGAGTGGCAGTT 59.487 57.895 0.00 0.00 35.37 3.16
9473 10505 3.201494 CGAGATCGGAGTGGCAGT 58.799 61.111 0.00 0.00 35.37 4.40
9483 10515 0.806102 ATTTGCGTCCACCGAGATCG 60.806 55.000 0.00 0.00 39.56 3.69
9484 10516 0.931005 GATTTGCGTCCACCGAGATC 59.069 55.000 0.00 0.00 39.56 2.75
9485 10517 0.462047 GGATTTGCGTCCACCGAGAT 60.462 55.000 0.00 0.00 39.56 2.75
9486 10518 1.079405 GGATTTGCGTCCACCGAGA 60.079 57.895 0.00 0.00 39.56 4.04
9487 10519 1.361668 CTGGATTTGCGTCCACCGAG 61.362 60.000 1.54 0.00 43.20 4.63
9488 10520 1.375396 CTGGATTTGCGTCCACCGA 60.375 57.895 1.54 0.00 43.20 4.69
9489 10521 1.361668 CTCTGGATTTGCGTCCACCG 61.362 60.000 1.54 0.00 43.20 4.94
9490 10522 1.648467 GCTCTGGATTTGCGTCCACC 61.648 60.000 1.54 0.00 43.20 4.61
9491 10523 1.796796 GCTCTGGATTTGCGTCCAC 59.203 57.895 1.54 0.00 43.20 4.02
9492 10524 1.741401 CGCTCTGGATTTGCGTCCA 60.741 57.895 5.35 5.35 45.78 4.02
9493 10525 3.093278 CGCTCTGGATTTGCGTCC 58.907 61.111 0.00 0.00 44.00 4.79
9497 10529 1.739466 TCACATTCGCTCTGGATTTGC 59.261 47.619 0.00 0.00 0.00 3.68
9498 10530 2.096496 GGTCACATTCGCTCTGGATTTG 59.904 50.000 0.00 0.00 0.00 2.32
9499 10531 2.359900 GGTCACATTCGCTCTGGATTT 58.640 47.619 0.00 0.00 0.00 2.17
9500 10532 1.740380 CGGTCACATTCGCTCTGGATT 60.740 52.381 0.00 0.00 0.00 3.01
9501 10533 0.179100 CGGTCACATTCGCTCTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
9502 10534 1.215382 CGGTCACATTCGCTCTGGA 59.785 57.895 0.00 0.00 0.00 3.86
9503 10535 1.811266 CCGGTCACATTCGCTCTGG 60.811 63.158 0.00 0.00 0.00 3.86
9504 10536 2.456119 GCCGGTCACATTCGCTCTG 61.456 63.158 1.90 0.00 0.00 3.35
9505 10537 2.125512 GCCGGTCACATTCGCTCT 60.126 61.111 1.90 0.00 0.00 4.09
9506 10538 3.195698 GGCCGGTCACATTCGCTC 61.196 66.667 0.00 0.00 0.00 5.03
9507 10539 4.015406 TGGCCGGTCACATTCGCT 62.015 61.111 3.51 0.00 0.00 4.93
9508 10540 2.845752 TAGTGGCCGGTCACATTCGC 62.846 60.000 38.48 13.21 39.93 4.70
9509 10541 1.082117 GTAGTGGCCGGTCACATTCG 61.082 60.000 38.48 0.00 39.93 3.34
9510 10542 0.249398 AGTAGTGGCCGGTCACATTC 59.751 55.000 38.48 26.39 39.93 2.67
9511 10543 0.036388 CAGTAGTGGCCGGTCACATT 60.036 55.000 38.48 22.99 39.93 2.71
9512 10544 1.596934 CAGTAGTGGCCGGTCACAT 59.403 57.895 38.48 25.43 39.93 3.21
9513 10545 3.056458 CAGTAGTGGCCGGTCACA 58.944 61.111 38.48 22.65 39.93 3.58
9514 10546 2.434359 GCAGTAGTGGCCGGTCAC 60.434 66.667 31.85 31.85 37.89 3.67
9515 10547 2.290287 ATGCAGTAGTGGCCGGTCA 61.290 57.895 3.51 3.51 0.00 4.02
9516 10548 1.815421 CATGCAGTAGTGGCCGGTC 60.815 63.158 0.00 0.00 0.00 4.79
9517 10549 2.124507 AACATGCAGTAGTGGCCGGT 62.125 55.000 1.90 0.00 0.00 5.28
9518 10550 1.377202 AACATGCAGTAGTGGCCGG 60.377 57.895 0.00 0.00 0.00 6.13
9519 10551 1.647545 CCAACATGCAGTAGTGGCCG 61.648 60.000 0.00 0.00 0.00 6.13
9520 10552 1.937546 GCCAACATGCAGTAGTGGCC 61.938 60.000 18.12 0.00 35.15 5.36
9521 10553 1.508088 GCCAACATGCAGTAGTGGC 59.492 57.895 15.21 15.21 0.00 5.01
9522 10554 1.647545 CGGCCAACATGCAGTAGTGG 61.648 60.000 2.24 0.00 0.00 4.00
9523 10555 0.673333 TCGGCCAACATGCAGTAGTG 60.673 55.000 2.24 0.00 0.00 2.74
9524 10556 0.036164 TTCGGCCAACATGCAGTAGT 59.964 50.000 2.24 0.00 0.00 2.73
9525 10557 0.447801 GTTCGGCCAACATGCAGTAG 59.552 55.000 2.24 0.00 34.76 2.57
9526 10558 1.295357 CGTTCGGCCAACATGCAGTA 61.295 55.000 2.24 0.00 34.20 2.74
9527 10559 2.616330 CGTTCGGCCAACATGCAGT 61.616 57.895 2.24 0.00 34.20 4.40
9528 10560 2.176546 CGTTCGGCCAACATGCAG 59.823 61.111 2.24 0.00 34.20 4.41
9529 10561 2.281139 TCGTTCGGCCAACATGCA 60.281 55.556 2.24 0.00 34.20 3.96
9530 10562 2.175811 GTCGTTCGGCCAACATGC 59.824 61.111 2.24 0.00 34.20 4.06
9531 10563 2.474266 CGTCGTTCGGCCAACATG 59.526 61.111 2.24 0.00 34.20 3.21
9532 10564 3.419759 GCGTCGTTCGGCCAACAT 61.420 61.111 2.24 0.00 40.26 2.71
9538 10570 3.401846 GAATGTCGCGTCGTTCGGC 62.402 63.158 19.57 1.85 40.26 5.54
9539 10571 1.610715 TTGAATGTCGCGTCGTTCGG 61.611 55.000 25.57 0.00 40.26 4.30
9540 10572 0.159973 TTTGAATGTCGCGTCGTTCG 59.840 50.000 25.57 0.00 43.12 3.95
9541 10573 2.503943 ATTTGAATGTCGCGTCGTTC 57.496 45.000 24.98 24.98 34.89 3.95
9542 10574 2.570169 CAATTTGAATGTCGCGTCGTT 58.430 42.857 10.55 10.55 0.00 3.85
9543 10575 1.136085 CCAATTTGAATGTCGCGTCGT 60.136 47.619 5.77 0.00 0.00 4.34
9544 10576 1.136085 ACCAATTTGAATGTCGCGTCG 60.136 47.619 5.77 0.00 0.00 5.12
9545 10577 2.241722 CACCAATTTGAATGTCGCGTC 58.758 47.619 5.77 0.00 0.00 5.19
9546 10578 2.330231 CACCAATTTGAATGTCGCGT 57.670 45.000 5.77 0.00 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.