Multiple sequence alignment - TraesCS4D01G170300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G170300 chr4D 100.000 4426 0 0 1 4426 295852322 295847897 0.000000e+00 8174.0
1 TraesCS4D01G170300 chr4D 81.967 122 22 0 2876 2997 96905231 96905110 2.180000e-18 104.0
2 TraesCS4D01G170300 chr4D 86.667 90 10 2 91 179 380455074 380454986 1.010000e-16 99.0
3 TraesCS4D01G170300 chr4B 91.787 2216 85 31 214 2354 363643533 363645726 0.000000e+00 2994.0
4 TraesCS4D01G170300 chr4B 91.147 689 50 5 3273 3958 363646614 363647294 0.000000e+00 924.0
5 TraesCS4D01G170300 chr4B 91.753 485 16 10 2419 2879 363645741 363646225 0.000000e+00 652.0
6 TraesCS4D01G170300 chr4B 86.477 281 27 2 4154 4424 363649109 363649388 9.310000e-77 298.0
7 TraesCS4D01G170300 chr4B 96.575 146 4 1 3032 3176 363646468 363646613 1.590000e-59 241.0
8 TraesCS4D01G170300 chr4B 80.417 240 37 5 4186 4425 123483706 123483935 1.640000e-39 174.0
9 TraesCS4D01G170300 chr4B 80.383 209 15 5 3951 4158 363648885 363649068 7.720000e-28 135.0
10 TraesCS4D01G170300 chr4B 86.325 117 16 0 2876 2992 141456040 141455924 1.290000e-25 128.0
11 TraesCS4D01G170300 chr4B 83.471 121 19 1 2876 2995 518094048 518094168 1.300000e-20 111.0
12 TraesCS4D01G170300 chr4A 89.176 1395 49 36 770 2071 195390586 195391971 0.000000e+00 1646.0
13 TraesCS4D01G170300 chr4A 91.089 808 56 9 3591 4397 195393449 195394241 0.000000e+00 1079.0
14 TraesCS4D01G170300 chr4A 93.856 472 21 7 2419 2883 195392226 195392696 0.000000e+00 704.0
15 TraesCS4D01G170300 chr4A 92.835 321 18 3 214 534 195387716 195388031 1.120000e-125 460.0
16 TraesCS4D01G170300 chr4A 95.604 273 5 4 3320 3589 195392891 195393159 8.790000e-117 431.0
17 TraesCS4D01G170300 chr4A 94.828 232 12 0 2119 2350 195391974 195392205 3.250000e-96 363.0
18 TraesCS4D01G170300 chr4A 92.958 213 11 2 519 727 195390376 195390588 1.550000e-79 307.0
19 TraesCS4D01G170300 chr4A 92.529 174 8 4 3008 3178 195392711 195392882 1.230000e-60 244.0
20 TraesCS4D01G170300 chr4A 88.000 100 10 2 3177 3275 732375828 732375926 2.800000e-22 117.0
21 TraesCS4D01G170300 chr2D 80.816 245 45 1 4181 4425 568930698 568930940 1.620000e-44 191.0
22 TraesCS4D01G170300 chr2D 87.755 98 12 0 3178 3275 646498491 646498588 1.010000e-21 115.0
23 TraesCS4D01G170300 chr5D 88.312 154 17 1 4256 4408 80444313 80444160 2.720000e-42 183.0
24 TraesCS4D01G170300 chr5D 77.823 248 43 7 4181 4426 313788233 313788470 4.610000e-30 143.0
25 TraesCS4D01G170300 chr5D 90.196 102 6 2 3175 3275 255946631 255946729 3.590000e-26 130.0
26 TraesCS4D01G170300 chr5D 82.946 129 21 1 2869 2996 435577373 435577245 1.010000e-21 115.0
27 TraesCS4D01G170300 chr5D 82.906 117 18 2 3169 3283 255369185 255369301 2.180000e-18 104.0
28 TraesCS4D01G170300 chr3A 81.991 211 38 0 4181 4391 646465514 646465724 3.520000e-41 180.0
29 TraesCS4D01G170300 chr3A 81.991 211 38 0 4181 4391 646531169 646531379 3.520000e-41 180.0
30 TraesCS4D01G170300 chr7D 90.291 103 7 3 3649 3748 417575756 417575858 9.990000e-27 132.0
31 TraesCS4D01G170300 chr7D 92.045 88 4 3 3178 3264 426686090 426686175 2.160000e-23 121.0
32 TraesCS4D01G170300 chr7D 82.051 78 12 2 97 173 420731624 420731548 1.030000e-06 65.8
33 TraesCS4D01G170300 chrUn 89.524 105 8 1 3647 3748 86511170 86511274 3.590000e-26 130.0
34 TraesCS4D01G170300 chrUn 89.524 105 8 1 3647 3748 170985323 170985427 3.590000e-26 130.0
35 TraesCS4D01G170300 chrUn 90.196 102 7 1 3650 3748 171053394 171053293 3.590000e-26 130.0
36 TraesCS4D01G170300 chrUn 90.196 102 7 1 3650 3748 189402219 189402118 3.590000e-26 130.0
37 TraesCS4D01G170300 chrUn 89.524 105 8 1 3647 3748 251414330 251414434 3.590000e-26 130.0
38 TraesCS4D01G170300 chr6A 88.288 111 8 5 3652 3757 578218633 578218523 1.290000e-25 128.0
39 TraesCS4D01G170300 chr2B 93.103 87 6 0 3178 3264 422508519 422508433 1.290000e-25 128.0
40 TraesCS4D01G170300 chr2B 89.000 100 11 0 3176 3275 518046829 518046928 1.670000e-24 124.0
41 TraesCS4D01G170300 chr2B 85.227 88 13 0 92 179 712617613 712617526 1.700000e-14 91.6
42 TraesCS4D01G170300 chr2B 94.872 39 2 0 92 130 166471976 166472014 1.330000e-05 62.1
43 TraesCS4D01G170300 chr6D 85.470 117 16 1 2876 2992 367534250 367534365 2.160000e-23 121.0
44 TraesCS4D01G170300 chr1D 85.965 114 14 2 3164 3275 12070081 12070194 2.160000e-23 121.0
45 TraesCS4D01G170300 chr1D 85.567 97 11 3 91 184 108261632 108261536 1.010000e-16 99.0
46 TraesCS4D01G170300 chr3B 84.298 121 18 1 2879 2999 37245904 37245785 2.800000e-22 117.0
47 TraesCS4D01G170300 chr3B 81.395 129 24 0 2864 2992 824262074 824262202 6.050000e-19 106.0
48 TraesCS4D01G170300 chr5B 83.761 117 19 0 2876 2992 324041661 324041777 1.300000e-20 111.0
49 TraesCS4D01G170300 chr5B 83.607 122 17 2 2876 2997 583709025 583708907 1.300000e-20 111.0
50 TraesCS4D01G170300 chr1A 87.129 101 8 3 3177 3275 531667373 531667276 4.680000e-20 110.0
51 TraesCS4D01G170300 chr1A 97.619 42 1 0 1 42 592067687 592067646 6.140000e-09 73.1
52 TraesCS4D01G170300 chr1A 80.769 78 13 2 102 179 45820727 45820652 4.780000e-05 60.2
53 TraesCS4D01G170300 chr3D 73.413 252 52 14 4181 4422 447974217 447974463 3.670000e-11 80.5
54 TraesCS4D01G170300 chr5A 97.778 45 1 0 1 45 376095112 376095156 1.320000e-10 78.7
55 TraesCS4D01G170300 chr7B 93.023 43 3 0 93 135 436751729 436751687 3.700000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G170300 chr4D 295847897 295852322 4425 True 8174.00 8174 100.000000 1 4426 1 chr4D.!!$R2 4425
1 TraesCS4D01G170300 chr4B 363643533 363649388 5855 False 874.00 2994 89.687000 214 4424 6 chr4B.!!$F3 4210
2 TraesCS4D01G170300 chr4A 195387716 195394241 6525 False 654.25 1646 92.859375 214 4397 8 chr4A.!!$F2 4183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.512952 AGACGTGATTTGTGAAGCGC 59.487 50.0 0.0 0.0 0.00 5.92 F
2034 4529 0.318784 CCGAAGCTATCCAGGTACGC 60.319 60.0 0.0 0.0 0.00 4.42 F
2387 4901 0.107654 GCAACGGCATCCCTCTAGTT 60.108 55.0 0.0 0.0 40.72 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 4620 0.319728 ACTCTGCTGCTCACGTCATT 59.680 50.0 0.00 0.00 0.00 2.57 R
3033 5574 0.385390 GCACTCCAAACCACCAAGTG 59.615 55.0 0.00 0.00 40.19 3.16 R
4282 8967 0.391130 ACCGCATGAACGTGCACTAT 60.391 50.0 16.19 2.72 45.30 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.727100 AAAATCCTTTAAATCAAAGAGACCCT 57.273 30.769 0.00 0.00 45.62 4.34
42 43 9.822727 AAAATCCTTTAAATCAAAGAGACCCTA 57.177 29.630 0.00 0.00 45.62 3.53
43 44 9.822727 AAATCCTTTAAATCAAAGAGACCCTAA 57.177 29.630 0.00 0.00 45.62 2.69
44 45 9.822727 AATCCTTTAAATCAAAGAGACCCTAAA 57.177 29.630 0.00 0.00 45.62 1.85
45 46 9.997172 ATCCTTTAAATCAAAGAGACCCTAAAT 57.003 29.630 0.00 0.00 45.62 1.40
55 56 9.901172 TCAAAGAGACCCTAAATATTTTACTCC 57.099 33.333 5.91 0.00 0.00 3.85
56 57 9.121658 CAAAGAGACCCTAAATATTTTACTCCC 57.878 37.037 5.91 0.00 0.00 4.30
57 58 8.640033 AAGAGACCCTAAATATTTTACTCCCT 57.360 34.615 5.91 0.00 0.00 4.20
58 59 8.265108 AGAGACCCTAAATATTTTACTCCCTC 57.735 38.462 5.91 6.96 0.00 4.30
59 60 7.292827 AGAGACCCTAAATATTTTACTCCCTCC 59.707 40.741 5.91 0.00 0.00 4.30
60 61 6.042897 AGACCCTAAATATTTTACTCCCTCCG 59.957 42.308 5.91 0.00 0.00 4.63
61 62 5.001874 CCCTAAATATTTTACTCCCTCCGC 58.998 45.833 5.91 0.00 0.00 5.54
62 63 5.221864 CCCTAAATATTTTACTCCCTCCGCT 60.222 44.000 5.91 0.00 0.00 5.52
63 64 5.932883 CCTAAATATTTTACTCCCTCCGCTC 59.067 44.000 5.91 0.00 0.00 5.03
64 65 4.353383 AATATTTTACTCCCTCCGCTCC 57.647 45.455 0.00 0.00 0.00 4.70
65 66 1.880941 ATTTTACTCCCTCCGCTCCT 58.119 50.000 0.00 0.00 0.00 3.69
66 67 2.537633 TTTTACTCCCTCCGCTCCTA 57.462 50.000 0.00 0.00 0.00 2.94
67 68 2.537633 TTTACTCCCTCCGCTCCTAA 57.462 50.000 0.00 0.00 0.00 2.69
68 69 2.537633 TTACTCCCTCCGCTCCTAAA 57.462 50.000 0.00 0.00 0.00 1.85
69 70 2.769602 TACTCCCTCCGCTCCTAAAT 57.230 50.000 0.00 0.00 0.00 1.40
70 71 1.880941 ACTCCCTCCGCTCCTAAATT 58.119 50.000 0.00 0.00 0.00 1.82
71 72 2.197465 ACTCCCTCCGCTCCTAAATTT 58.803 47.619 0.00 0.00 0.00 1.82
72 73 3.381335 ACTCCCTCCGCTCCTAAATTTA 58.619 45.455 0.00 0.00 0.00 1.40
73 74 3.974642 ACTCCCTCCGCTCCTAAATTTAT 59.025 43.478 0.00 0.00 0.00 1.40
74 75 4.202367 ACTCCCTCCGCTCCTAAATTTATG 60.202 45.833 0.00 0.00 0.00 1.90
75 76 3.971305 TCCCTCCGCTCCTAAATTTATGA 59.029 43.478 0.00 0.74 0.00 2.15
76 77 4.410883 TCCCTCCGCTCCTAAATTTATGAA 59.589 41.667 0.00 0.00 0.00 2.57
77 78 4.515567 CCCTCCGCTCCTAAATTTATGAAC 59.484 45.833 0.00 0.00 0.00 3.18
78 79 4.211374 CCTCCGCTCCTAAATTTATGAACG 59.789 45.833 15.24 15.24 0.00 3.95
79 80 4.124238 TCCGCTCCTAAATTTATGAACGG 58.876 43.478 26.45 26.45 37.94 4.44
80 81 3.250040 CCGCTCCTAAATTTATGAACGGG 59.750 47.826 25.47 12.64 35.09 5.28
81 82 3.875134 CGCTCCTAAATTTATGAACGGGT 59.125 43.478 14.68 0.00 0.00 5.28
82 83 5.051816 CGCTCCTAAATTTATGAACGGGTA 58.948 41.667 14.68 0.00 0.00 3.69
83 84 5.050567 CGCTCCTAAATTTATGAACGGGTAC 60.051 44.000 14.68 0.00 0.00 3.34
84 85 5.818857 GCTCCTAAATTTATGAACGGGTACA 59.181 40.000 0.00 0.00 0.00 2.90
85 86 6.485648 GCTCCTAAATTTATGAACGGGTACAT 59.514 38.462 0.00 0.00 0.00 2.29
86 87 7.658575 GCTCCTAAATTTATGAACGGGTACATA 59.341 37.037 0.00 0.00 0.00 2.29
87 88 8.891671 TCCTAAATTTATGAACGGGTACATAC 57.108 34.615 0.00 0.00 0.00 2.39
88 89 7.652909 TCCTAAATTTATGAACGGGTACATACG 59.347 37.037 0.00 0.00 0.00 3.06
89 90 6.607735 AAATTTATGAACGGGTACATACGG 57.392 37.500 8.38 0.00 0.00 4.02
90 91 4.998671 TTTATGAACGGGTACATACGGA 57.001 40.909 8.38 0.00 0.00 4.69
91 92 5.534207 TTTATGAACGGGTACATACGGAT 57.466 39.130 8.38 0.00 0.00 4.18
92 93 5.534207 TTATGAACGGGTACATACGGATT 57.466 39.130 8.38 0.00 0.00 3.01
93 94 3.891422 TGAACGGGTACATACGGATTT 57.109 42.857 8.38 0.00 0.00 2.17
94 95 4.205065 TGAACGGGTACATACGGATTTT 57.795 40.909 8.38 0.00 0.00 1.82
95 96 5.336150 TGAACGGGTACATACGGATTTTA 57.664 39.130 8.38 0.00 0.00 1.52
96 97 5.350633 TGAACGGGTACATACGGATTTTAG 58.649 41.667 8.38 0.00 0.00 1.85
97 98 5.105392 TGAACGGGTACATACGGATTTTAGT 60.105 40.000 8.38 0.00 0.00 2.24
98 99 4.685924 ACGGGTACATACGGATTTTAGTG 58.314 43.478 8.38 0.00 0.00 2.74
99 100 4.160252 ACGGGTACATACGGATTTTAGTGT 59.840 41.667 8.38 0.00 0.00 3.55
100 101 5.359576 ACGGGTACATACGGATTTTAGTGTA 59.640 40.000 8.38 0.00 0.00 2.90
101 102 6.040842 ACGGGTACATACGGATTTTAGTGTAT 59.959 38.462 8.38 0.00 0.00 2.29
102 103 6.925165 CGGGTACATACGGATTTTAGTGTATT 59.075 38.462 0.00 0.00 0.00 1.89
103 104 7.439056 CGGGTACATACGGATTTTAGTGTATTT 59.561 37.037 0.00 0.00 0.00 1.40
104 105 8.553696 GGGTACATACGGATTTTAGTGTATTTG 58.446 37.037 0.00 0.00 0.00 2.32
105 106 9.101655 GGTACATACGGATTTTAGTGTATTTGT 57.898 33.333 0.00 0.00 0.00 2.83
108 109 9.221933 ACATACGGATTTTAGTGTATTTGTTCA 57.778 29.630 0.00 0.00 0.00 3.18
109 110 9.485591 CATACGGATTTTAGTGTATTTGTTCAC 57.514 33.333 0.00 0.00 35.13 3.18
110 111 7.739498 ACGGATTTTAGTGTATTTGTTCACT 57.261 32.000 0.00 0.00 45.21 3.41
111 112 7.803724 ACGGATTTTAGTGTATTTGTTCACTC 58.196 34.615 1.08 0.00 42.77 3.51
112 113 6.953743 CGGATTTTAGTGTATTTGTTCACTCG 59.046 38.462 1.08 0.00 42.77 4.18
113 114 7.359765 CGGATTTTAGTGTATTTGTTCACTCGT 60.360 37.037 1.08 0.00 42.77 4.18
114 115 8.287503 GGATTTTAGTGTATTTGTTCACTCGTT 58.712 33.333 1.08 0.00 42.77 3.85
115 116 9.659830 GATTTTAGTGTATTTGTTCACTCGTTT 57.340 29.630 1.08 0.00 42.77 3.60
116 117 9.659830 ATTTTAGTGTATTTGTTCACTCGTTTC 57.340 29.630 1.08 0.00 42.77 2.78
117 118 7.773864 TTAGTGTATTTGTTCACTCGTTTCA 57.226 32.000 1.08 0.00 42.77 2.69
118 119 6.287107 AGTGTATTTGTTCACTCGTTTCAG 57.713 37.500 0.00 0.00 40.28 3.02
119 120 5.815740 AGTGTATTTGTTCACTCGTTTCAGT 59.184 36.000 0.00 0.00 40.28 3.41
120 121 6.018994 AGTGTATTTGTTCACTCGTTTCAGTC 60.019 38.462 0.00 0.00 40.28 3.51
121 122 4.813296 ATTTGTTCACTCGTTTCAGTCC 57.187 40.909 0.00 0.00 0.00 3.85
122 123 1.847818 TGTTCACTCGTTTCAGTCCG 58.152 50.000 0.00 0.00 0.00 4.79
123 124 1.135527 TGTTCACTCGTTTCAGTCCGT 59.864 47.619 0.00 0.00 0.00 4.69
124 125 2.358582 TGTTCACTCGTTTCAGTCCGTA 59.641 45.455 0.00 0.00 0.00 4.02
125 126 3.005050 TGTTCACTCGTTTCAGTCCGTAT 59.995 43.478 0.00 0.00 0.00 3.06
126 127 3.211803 TCACTCGTTTCAGTCCGTATG 57.788 47.619 0.00 0.00 0.00 2.39
127 128 2.555325 TCACTCGTTTCAGTCCGTATGT 59.445 45.455 0.00 0.00 0.00 2.29
128 129 3.752747 TCACTCGTTTCAGTCCGTATGTA 59.247 43.478 0.00 0.00 0.00 2.29
129 130 3.850273 CACTCGTTTCAGTCCGTATGTAC 59.150 47.826 0.00 0.00 0.00 2.90
130 131 3.755378 ACTCGTTTCAGTCCGTATGTACT 59.245 43.478 0.00 0.00 0.00 2.73
131 132 4.217118 ACTCGTTTCAGTCCGTATGTACTT 59.783 41.667 0.00 0.00 0.00 2.24
132 133 4.726416 TCGTTTCAGTCCGTATGTACTTC 58.274 43.478 0.00 0.00 0.00 3.01
133 134 4.216042 TCGTTTCAGTCCGTATGTACTTCA 59.784 41.667 0.00 0.00 0.00 3.02
134 135 5.100259 CGTTTCAGTCCGTATGTACTTCAT 58.900 41.667 0.00 0.00 40.25 2.57
135 136 5.004440 CGTTTCAGTCCGTATGTACTTCATG 59.996 44.000 0.00 0.00 37.91 3.07
136 137 5.654603 TTCAGTCCGTATGTACTTCATGT 57.345 39.130 0.00 0.00 37.91 3.21
137 138 5.654603 TCAGTCCGTATGTACTTCATGTT 57.345 39.130 0.00 0.00 37.91 2.71
138 139 6.762702 TCAGTCCGTATGTACTTCATGTTA 57.237 37.500 0.00 0.00 37.91 2.41
139 140 7.160547 TCAGTCCGTATGTACTTCATGTTAA 57.839 36.000 0.00 0.00 37.91 2.01
140 141 7.604549 TCAGTCCGTATGTACTTCATGTTAAA 58.395 34.615 0.00 0.00 37.91 1.52
141 142 8.089597 TCAGTCCGTATGTACTTCATGTTAAAA 58.910 33.333 0.00 0.00 37.91 1.52
142 143 8.879759 CAGTCCGTATGTACTTCATGTTAAAAT 58.120 33.333 0.00 0.00 37.91 1.82
156 157 9.751542 TTCATGTTAAAATATCAAAAACACCGT 57.248 25.926 0.00 0.00 33.27 4.83
169 170 7.237871 TCAAAAACACCGTATATTCATGAACG 58.762 34.615 11.07 10.49 35.20 3.95
177 178 6.003234 CGTATATTCATGAACGGAGAGAGT 57.997 41.667 11.07 0.00 0.00 3.24
178 179 7.130303 CGTATATTCATGAACGGAGAGAGTA 57.870 40.000 11.07 0.00 0.00 2.59
179 180 7.016466 CGTATATTCATGAACGGAGAGAGTAC 58.984 42.308 11.07 3.36 0.00 2.73
180 181 3.759527 TTCATGAACGGAGAGAGTACG 57.240 47.619 3.38 0.00 0.00 3.67
181 182 2.708051 TCATGAACGGAGAGAGTACGT 58.292 47.619 0.00 0.00 43.43 3.57
188 189 4.352600 ACGGAGAGAGTACGTTTGTATG 57.647 45.455 0.00 0.00 37.61 2.39
189 190 4.005650 ACGGAGAGAGTACGTTTGTATGA 58.994 43.478 0.00 0.00 37.61 2.15
190 191 4.094590 ACGGAGAGAGTACGTTTGTATGAG 59.905 45.833 0.00 0.00 37.61 2.90
191 192 4.094590 CGGAGAGAGTACGTTTGTATGAGT 59.905 45.833 0.00 0.00 32.11 3.41
192 193 5.292834 CGGAGAGAGTACGTTTGTATGAGTA 59.707 44.000 0.00 0.00 32.11 2.59
193 194 6.509837 CGGAGAGAGTACGTTTGTATGAGTAG 60.510 46.154 0.00 0.00 32.11 2.57
194 195 6.538021 GGAGAGAGTACGTTTGTATGAGTAGA 59.462 42.308 0.00 0.00 32.11 2.59
195 196 7.306205 AGAGAGTACGTTTGTATGAGTAGAC 57.694 40.000 0.00 0.00 32.11 2.59
196 197 6.035866 AGAGAGTACGTTTGTATGAGTAGACG 59.964 42.308 0.00 0.00 36.65 4.18
197 198 5.641209 AGAGTACGTTTGTATGAGTAGACGT 59.359 40.000 0.00 4.73 44.60 4.34
198 199 5.625251 AGTACGTTTGTATGAGTAGACGTG 58.375 41.667 9.29 0.00 42.74 4.49
199 200 4.754372 ACGTTTGTATGAGTAGACGTGA 57.246 40.909 0.00 0.00 41.49 4.35
200 201 5.306532 ACGTTTGTATGAGTAGACGTGAT 57.693 39.130 0.00 0.00 41.49 3.06
201 202 5.706916 ACGTTTGTATGAGTAGACGTGATT 58.293 37.500 0.00 0.00 41.49 2.57
202 203 6.154445 ACGTTTGTATGAGTAGACGTGATTT 58.846 36.000 0.00 0.00 41.49 2.17
203 204 6.643770 ACGTTTGTATGAGTAGACGTGATTTT 59.356 34.615 0.00 0.00 41.49 1.82
204 205 7.170320 ACGTTTGTATGAGTAGACGTGATTTTT 59.830 33.333 0.00 0.00 41.49 1.94
234 235 1.126846 GGAGACGTGATTTGTGAAGCG 59.873 52.381 0.00 0.00 0.00 4.68
235 236 0.512952 AGACGTGATTTGTGAAGCGC 59.487 50.000 0.00 0.00 0.00 5.92
255 256 0.736325 AGTAAACTAGCGCGCTGGTG 60.736 55.000 43.82 32.23 37.81 4.17
279 280 0.528684 GGCTTCGATGGTCTCTTCCG 60.529 60.000 0.00 0.00 0.00 4.30
297 298 1.131826 GACGCCGGATTTGAACACG 59.868 57.895 5.05 0.00 0.00 4.49
308 309 2.074547 TTGAACACGCCTAGCAGTAC 57.925 50.000 0.00 0.00 0.00 2.73
322 323 5.515626 CCTAGCAGTACGTAGCAGTTAAAAG 59.484 44.000 9.22 0.00 0.00 2.27
329 330 3.435671 ACGTAGCAGTTAAAAGCATGTCC 59.564 43.478 0.00 0.00 0.00 4.02
330 331 3.435327 CGTAGCAGTTAAAAGCATGTCCA 59.565 43.478 0.00 0.00 0.00 4.02
331 332 4.083537 CGTAGCAGTTAAAAGCATGTCCAA 60.084 41.667 0.00 0.00 0.00 3.53
332 333 4.935352 AGCAGTTAAAAGCATGTCCAAA 57.065 36.364 0.00 0.00 0.00 3.28
333 334 5.473066 AGCAGTTAAAAGCATGTCCAAAT 57.527 34.783 0.00 0.00 0.00 2.32
334 335 5.473039 AGCAGTTAAAAGCATGTCCAAATC 58.527 37.500 0.00 0.00 0.00 2.17
352 353 8.610896 GTCCAAATCAAATCAATCAAACAAACA 58.389 29.630 0.00 0.00 0.00 2.83
456 457 7.537306 TCTGTTTTTGTTCTTCTTTCGTCTTTG 59.463 33.333 0.00 0.00 0.00 2.77
540 548 4.335874 CAGGTAGCACTAGTAGGTACAGTG 59.664 50.000 23.59 18.80 40.67 3.66
750 3134 1.737735 CTCGCGTGTGAGATTGCCA 60.738 57.895 5.77 0.00 38.28 4.92
756 3140 3.669290 CGCGTGTGAGATTGCCAAATAAA 60.669 43.478 0.00 0.00 0.00 1.40
777 3161 5.886960 AACGCTCAAAAAGATTCATAGCT 57.113 34.783 0.00 0.00 0.00 3.32
897 3292 4.715130 CCTCCCTCCACACCCCGA 62.715 72.222 0.00 0.00 0.00 5.14
907 3302 1.674980 ACACCCCGACTCTCTCGTC 60.675 63.158 0.00 0.00 41.18 4.20
928 3323 1.394532 ACCCTTCCTCCTCTCCTACA 58.605 55.000 0.00 0.00 0.00 2.74
929 3324 1.007359 ACCCTTCCTCCTCTCCTACAC 59.993 57.143 0.00 0.00 0.00 2.90
930 3325 1.289530 CCCTTCCTCCTCTCCTACACT 59.710 57.143 0.00 0.00 0.00 3.55
931 3326 2.661718 CCTTCCTCCTCTCCTACACTC 58.338 57.143 0.00 0.00 0.00 3.51
932 3327 2.294074 CTTCCTCCTCTCCTACACTCG 58.706 57.143 0.00 0.00 0.00 4.18
993 3400 2.242043 CATATTCCATTCAGGTGGGCC 58.758 52.381 0.00 0.00 39.80 5.80
1059 3466 2.183555 GTTAGGACGCCGGTGGAG 59.816 66.667 21.14 3.29 0.00 3.86
1145 3552 4.492160 CAGGAAGCGCGCCGAGTA 62.492 66.667 30.33 0.00 0.00 2.59
1317 3735 2.027100 GGAGGGGAAGAAACAGTACCTG 60.027 54.545 0.00 0.00 37.52 4.00
1529 3947 4.029186 CAAGGCACGCACGCACAT 62.029 61.111 0.00 0.00 0.00 3.21
1548 3971 9.900710 ACGCACATACTAATAAATTGAACAAAA 57.099 25.926 0.00 0.00 0.00 2.44
1594 4046 3.845775 TGTCGCGTATACAAAGTAACGTC 59.154 43.478 5.77 0.00 37.64 4.34
1843 4328 7.482169 ACAAGAATACAGTAGTGATCCTTGA 57.518 36.000 21.40 0.00 0.00 3.02
1992 4487 2.100631 CATCGAGTTCGGCACCACC 61.101 63.158 1.26 0.00 40.29 4.61
2033 4528 1.315690 TCCGAAGCTATCCAGGTACG 58.684 55.000 0.00 0.00 0.00 3.67
2034 4529 0.318784 CCGAAGCTATCCAGGTACGC 60.319 60.000 0.00 0.00 0.00 4.42
2035 4530 0.660595 CGAAGCTATCCAGGTACGCG 60.661 60.000 3.53 3.53 0.00 6.01
2036 4531 0.318784 GAAGCTATCCAGGTACGCGG 60.319 60.000 12.47 0.00 0.00 6.46
2037 4532 0.754217 AAGCTATCCAGGTACGCGGA 60.754 55.000 12.47 0.00 39.04 5.54
2038 4533 1.007618 GCTATCCAGGTACGCGGAC 60.008 63.158 14.70 14.70 37.61 4.79
2039 4534 1.453762 GCTATCCAGGTACGCGGACT 61.454 60.000 22.94 7.60 37.61 3.85
2040 4535 1.888215 CTATCCAGGTACGCGGACTA 58.112 55.000 22.94 4.16 37.61 2.59
2047 4561 1.208052 AGGTACGCGGACTAGTCACTA 59.792 52.381 22.94 4.83 0.00 2.74
2072 4586 3.323403 AGTCACTAAAACAGAGCAGAGCT 59.677 43.478 0.00 0.00 43.88 4.09
2083 4597 0.913451 AGCAGAGCTTCCTCCCATGT 60.913 55.000 0.00 0.00 38.96 3.21
2088 4602 2.989639 CTTCCTCCCATGTGCGGA 59.010 61.111 0.00 0.00 0.00 5.54
2119 4633 3.670500 CTGCAAATGACGTGAGCAG 57.330 52.632 0.00 0.00 45.44 4.24
2120 4634 0.453950 CTGCAAATGACGTGAGCAGC 60.454 55.000 0.00 0.00 44.98 5.25
2121 4635 1.165284 TGCAAATGACGTGAGCAGCA 61.165 50.000 0.00 0.00 0.00 4.41
2145 4659 1.995376 TGAGGTTTTCCCTTTGGCTC 58.005 50.000 0.00 0.00 46.51 4.70
2314 4828 0.548031 ATGGCGTGATCCCTGACATT 59.452 50.000 0.00 0.00 0.00 2.71
2350 4864 0.856641 TGCACGAAACAACTAGACGC 59.143 50.000 0.00 0.00 0.00 5.19
2354 4868 1.602877 CGAAACAACTAGACGCGCGT 61.603 55.000 38.52 38.52 0.00 6.01
2355 4869 0.179282 GAAACAACTAGACGCGCGTG 60.179 55.000 42.90 28.25 0.00 5.34
2372 4886 4.120331 GCACAGGGCATCGGCAAC 62.120 66.667 0.00 0.00 43.71 4.17
2384 4898 2.908015 GGCAACGGCATCCCTCTA 59.092 61.111 0.00 0.00 43.71 2.43
2385 4899 1.227674 GGCAACGGCATCCCTCTAG 60.228 63.158 0.00 0.00 43.71 2.43
2386 4900 1.522569 GCAACGGCATCCCTCTAGT 59.477 57.895 0.00 0.00 40.72 2.57
2387 4901 0.107654 GCAACGGCATCCCTCTAGTT 60.108 55.000 0.00 0.00 40.72 2.24
2388 4902 1.656652 CAACGGCATCCCTCTAGTTG 58.343 55.000 0.00 0.00 34.08 3.16
2389 4903 1.066143 CAACGGCATCCCTCTAGTTGT 60.066 52.381 0.00 0.00 35.58 3.32
2390 4904 0.824759 ACGGCATCCCTCTAGTTGTC 59.175 55.000 0.00 0.00 0.00 3.18
2391 4905 0.824109 CGGCATCCCTCTAGTTGTCA 59.176 55.000 0.00 0.00 0.00 3.58
2392 4906 1.471676 CGGCATCCCTCTAGTTGTCAC 60.472 57.143 0.00 0.00 0.00 3.67
2393 4907 1.834263 GGCATCCCTCTAGTTGTCACT 59.166 52.381 0.00 0.00 36.99 3.41
2394 4908 2.237392 GGCATCCCTCTAGTTGTCACTT 59.763 50.000 0.00 0.00 34.06 3.16
2395 4909 3.526534 GCATCCCTCTAGTTGTCACTTC 58.473 50.000 0.00 0.00 34.06 3.01
2396 4910 3.196685 GCATCCCTCTAGTTGTCACTTCT 59.803 47.826 0.00 0.00 34.06 2.85
2397 4911 4.323104 GCATCCCTCTAGTTGTCACTTCTT 60.323 45.833 0.00 0.00 34.06 2.52
2398 4912 5.415221 CATCCCTCTAGTTGTCACTTCTTC 58.585 45.833 0.00 0.00 34.06 2.87
2399 4913 3.506455 TCCCTCTAGTTGTCACTTCTTCG 59.494 47.826 0.00 0.00 34.06 3.79
2400 4914 3.256136 CCCTCTAGTTGTCACTTCTTCGT 59.744 47.826 0.00 0.00 34.06 3.85
2401 4915 4.262079 CCCTCTAGTTGTCACTTCTTCGTT 60.262 45.833 0.00 0.00 34.06 3.85
2402 4916 5.048224 CCCTCTAGTTGTCACTTCTTCGTTA 60.048 44.000 0.00 0.00 34.06 3.18
2403 4917 6.087522 CCTCTAGTTGTCACTTCTTCGTTAG 58.912 44.000 0.00 0.00 34.06 2.34
2404 4918 5.458891 TCTAGTTGTCACTTCTTCGTTAGC 58.541 41.667 0.00 0.00 34.06 3.09
2405 4919 3.391049 AGTTGTCACTTCTTCGTTAGCC 58.609 45.455 0.00 0.00 0.00 3.93
2406 4920 2.450609 TGTCACTTCTTCGTTAGCCC 57.549 50.000 0.00 0.00 0.00 5.19
2407 4921 1.968493 TGTCACTTCTTCGTTAGCCCT 59.032 47.619 0.00 0.00 0.00 5.19
2408 4922 2.367567 TGTCACTTCTTCGTTAGCCCTT 59.632 45.455 0.00 0.00 0.00 3.95
2409 4923 3.181458 TGTCACTTCTTCGTTAGCCCTTT 60.181 43.478 0.00 0.00 0.00 3.11
2410 4924 3.813724 GTCACTTCTTCGTTAGCCCTTTT 59.186 43.478 0.00 0.00 0.00 2.27
2411 4925 4.275196 GTCACTTCTTCGTTAGCCCTTTTT 59.725 41.667 0.00 0.00 0.00 1.94
2412 4926 4.514066 TCACTTCTTCGTTAGCCCTTTTTC 59.486 41.667 0.00 0.00 0.00 2.29
2413 4927 4.515567 CACTTCTTCGTTAGCCCTTTTTCT 59.484 41.667 0.00 0.00 0.00 2.52
2414 4928 5.008712 CACTTCTTCGTTAGCCCTTTTTCTT 59.991 40.000 0.00 0.00 0.00 2.52
2415 4929 5.593095 ACTTCTTCGTTAGCCCTTTTTCTTT 59.407 36.000 0.00 0.00 0.00 2.52
2416 4930 5.684550 TCTTCGTTAGCCCTTTTTCTTTC 57.315 39.130 0.00 0.00 0.00 2.62
2417 4931 5.374071 TCTTCGTTAGCCCTTTTTCTTTCT 58.626 37.500 0.00 0.00 0.00 2.52
2433 4947 4.776349 TCTTTCTTTGCTGACCACTTGTA 58.224 39.130 0.00 0.00 0.00 2.41
2435 4949 5.239306 TCTTTCTTTGCTGACCACTTGTATG 59.761 40.000 0.00 0.00 0.00 2.39
2694 5232 1.525077 GTTTGTGCTCACCACCCGA 60.525 57.895 0.00 0.00 44.01 5.14
2735 5274 2.433436 ACGGTGGATTGGCTTTAACTC 58.567 47.619 0.00 0.00 0.00 3.01
2879 5418 6.477033 CACATGAAAGGTACTAGTGCATACTC 59.523 42.308 13.26 6.94 38.49 2.59
2882 5421 5.720041 TGAAAGGTACTAGTGCATACTCCTT 59.280 40.000 13.26 8.43 38.49 3.36
2884 5423 5.132043 AGGTACTAGTGCATACTCCTTCT 57.868 43.478 13.26 0.00 36.02 2.85
2885 5424 4.890581 AGGTACTAGTGCATACTCCTTCTG 59.109 45.833 13.26 0.00 36.02 3.02
2886 5425 4.645588 GGTACTAGTGCATACTCCTTCTGT 59.354 45.833 13.26 0.00 38.36 3.41
2887 5426 4.993029 ACTAGTGCATACTCCTTCTGTC 57.007 45.455 0.00 0.00 38.36 3.51
2888 5427 3.702045 ACTAGTGCATACTCCTTCTGTCC 59.298 47.826 0.00 0.00 38.36 4.02
2889 5428 2.540383 AGTGCATACTCCTTCTGTCCA 58.460 47.619 0.00 0.00 28.79 4.02
2890 5429 2.906389 AGTGCATACTCCTTCTGTCCAA 59.094 45.455 0.00 0.00 28.79 3.53
2891 5430 3.327757 AGTGCATACTCCTTCTGTCCAAA 59.672 43.478 0.00 0.00 28.79 3.28
2892 5431 4.072131 GTGCATACTCCTTCTGTCCAAAA 58.928 43.478 0.00 0.00 0.00 2.44
2893 5432 4.518970 GTGCATACTCCTTCTGTCCAAAAA 59.481 41.667 0.00 0.00 0.00 1.94
2894 5433 5.183904 GTGCATACTCCTTCTGTCCAAAAAT 59.816 40.000 0.00 0.00 0.00 1.82
2895 5434 6.374333 GTGCATACTCCTTCTGTCCAAAAATA 59.626 38.462 0.00 0.00 0.00 1.40
2896 5435 6.374333 TGCATACTCCTTCTGTCCAAAAATAC 59.626 38.462 0.00 0.00 0.00 1.89
2897 5436 6.599638 GCATACTCCTTCTGTCCAAAAATACT 59.400 38.462 0.00 0.00 0.00 2.12
2898 5437 7.121315 GCATACTCCTTCTGTCCAAAAATACTT 59.879 37.037 0.00 0.00 0.00 2.24
2899 5438 6.884280 ACTCCTTCTGTCCAAAAATACTTG 57.116 37.500 0.00 0.00 0.00 3.16
2900 5439 6.365520 ACTCCTTCTGTCCAAAAATACTTGT 58.634 36.000 0.00 0.00 0.00 3.16
2901 5440 6.486993 ACTCCTTCTGTCCAAAAATACTTGTC 59.513 38.462 0.00 0.00 0.00 3.18
2902 5441 5.468746 TCCTTCTGTCCAAAAATACTTGTCG 59.531 40.000 0.00 0.00 0.00 4.35
2903 5442 5.468746 CCTTCTGTCCAAAAATACTTGTCGA 59.531 40.000 0.00 0.00 0.00 4.20
2904 5443 6.017440 CCTTCTGTCCAAAAATACTTGTCGAA 60.017 38.462 0.00 0.00 0.00 3.71
2905 5444 6.539649 TCTGTCCAAAAATACTTGTCGAAG 57.460 37.500 0.00 0.00 35.07 3.79
2906 5445 5.468746 TCTGTCCAAAAATACTTGTCGAAGG 59.531 40.000 0.00 0.00 32.95 3.46
2907 5446 5.369833 TGTCCAAAAATACTTGTCGAAGGA 58.630 37.500 0.00 0.00 32.95 3.36
2908 5447 5.823570 TGTCCAAAAATACTTGTCGAAGGAA 59.176 36.000 0.00 0.00 32.95 3.36
2909 5448 6.488683 TGTCCAAAAATACTTGTCGAAGGAAT 59.511 34.615 0.00 0.00 32.95 3.01
2910 5449 7.662258 TGTCCAAAAATACTTGTCGAAGGAATA 59.338 33.333 0.00 0.00 32.95 1.75
2911 5450 8.674607 GTCCAAAAATACTTGTCGAAGGAATAT 58.325 33.333 0.00 0.00 32.95 1.28
2912 5451 9.893634 TCCAAAAATACTTGTCGAAGGAATATA 57.106 29.630 0.00 0.00 32.95 0.86
2979 5518 9.906660 ATGCATTTCTTTAACAAGTATTTTCGA 57.093 25.926 0.00 0.00 0.00 3.71
2980 5519 9.737427 TGCATTTCTTTAACAAGTATTTTCGAA 57.263 25.926 0.00 0.00 0.00 3.71
2981 5520 9.989394 GCATTTCTTTAACAAGTATTTTCGAAC 57.011 29.630 0.00 0.00 0.00 3.95
2983 5522 8.770850 TTTCTTTAACAAGTATTTTCGAACGG 57.229 30.769 0.00 0.00 0.00 4.44
2984 5523 7.712264 TCTTTAACAAGTATTTTCGAACGGA 57.288 32.000 0.00 0.00 0.00 4.69
2985 5524 8.140677 TCTTTAACAAGTATTTTCGAACGGAA 57.859 30.769 0.00 0.00 0.00 4.30
2986 5525 8.277713 TCTTTAACAAGTATTTTCGAACGGAAG 58.722 33.333 0.00 0.00 35.70 3.46
2987 5526 5.352643 AACAAGTATTTTCGAACGGAAGG 57.647 39.130 0.00 0.00 35.70 3.46
2988 5527 4.634199 ACAAGTATTTTCGAACGGAAGGA 58.366 39.130 0.00 0.00 35.70 3.36
2989 5528 4.689345 ACAAGTATTTTCGAACGGAAGGAG 59.311 41.667 0.00 0.00 35.70 3.69
2995 5534 5.452078 TTTTCGAACGGAAGGAGTACTTA 57.548 39.130 0.00 0.00 40.21 2.24
3001 5540 5.563475 CGAACGGAAGGAGTACTTAGTTTGA 60.563 44.000 13.98 0.00 40.31 2.69
3015 5556 3.443099 AGTTTGAAACAGCTCCTTTGC 57.557 42.857 11.02 0.00 0.00 3.68
3033 5574 1.335964 TGCGTCTAACACTGAGCACTC 60.336 52.381 0.00 0.00 0.00 3.51
3038 5579 3.738282 GTCTAACACTGAGCACTCACTTG 59.262 47.826 0.00 0.05 35.46 3.16
3168 5905 5.063204 AGTTGTTTCATCCACTTCGATTCA 58.937 37.500 0.00 0.00 0.00 2.57
3173 5910 4.206477 TCATCCACTTCGATTCATGTGT 57.794 40.909 0.00 0.00 0.00 3.72
3174 5911 3.934579 TCATCCACTTCGATTCATGTGTG 59.065 43.478 0.00 0.00 0.00 3.82
3175 5912 3.401033 TCCACTTCGATTCATGTGTGT 57.599 42.857 0.00 0.00 0.00 3.72
3176 5913 4.529109 TCCACTTCGATTCATGTGTGTA 57.471 40.909 0.00 0.00 0.00 2.90
3177 5914 4.888917 TCCACTTCGATTCATGTGTGTAA 58.111 39.130 0.00 0.00 0.00 2.41
3178 5915 5.487433 TCCACTTCGATTCATGTGTGTAAT 58.513 37.500 0.00 0.00 0.00 1.89
3179 5916 6.635755 TCCACTTCGATTCATGTGTGTAATA 58.364 36.000 0.00 0.00 0.00 0.98
3180 5917 6.533723 TCCACTTCGATTCATGTGTGTAATAC 59.466 38.462 0.00 0.00 0.00 1.89
3181 5918 6.535150 CCACTTCGATTCATGTGTGTAATACT 59.465 38.462 0.00 0.00 0.00 2.12
3182 5919 7.064609 CCACTTCGATTCATGTGTGTAATACTT 59.935 37.037 0.00 0.00 0.00 2.24
3183 5920 8.110612 CACTTCGATTCATGTGTGTAATACTTC 58.889 37.037 0.00 0.00 0.00 3.01
3184 5921 7.277981 ACTTCGATTCATGTGTGTAATACTTCC 59.722 37.037 0.00 0.00 0.00 3.46
3185 5922 6.873997 TCGATTCATGTGTGTAATACTTCCT 58.126 36.000 0.00 0.00 0.00 3.36
3186 5923 6.978659 TCGATTCATGTGTGTAATACTTCCTC 59.021 38.462 0.00 0.00 0.00 3.71
3187 5924 6.201044 CGATTCATGTGTGTAATACTTCCTCC 59.799 42.308 0.00 0.00 0.00 4.30
3188 5925 5.006153 TCATGTGTGTAATACTTCCTCCG 57.994 43.478 0.00 0.00 0.00 4.63
3189 5926 4.464951 TCATGTGTGTAATACTTCCTCCGT 59.535 41.667 0.00 0.00 0.00 4.69
3190 5927 4.445452 TGTGTGTAATACTTCCTCCGTC 57.555 45.455 0.00 0.00 0.00 4.79
3191 5928 3.194116 TGTGTGTAATACTTCCTCCGTCC 59.806 47.826 0.00 0.00 0.00 4.79
3192 5929 3.194116 GTGTGTAATACTTCCTCCGTCCA 59.806 47.826 0.00 0.00 0.00 4.02
3193 5930 3.446161 TGTGTAATACTTCCTCCGTCCAG 59.554 47.826 0.00 0.00 0.00 3.86
3194 5931 3.698040 GTGTAATACTTCCTCCGTCCAGA 59.302 47.826 0.00 0.00 0.00 3.86
3195 5932 4.159135 GTGTAATACTTCCTCCGTCCAGAA 59.841 45.833 0.00 0.00 0.00 3.02
3196 5933 4.773674 TGTAATACTTCCTCCGTCCAGAAA 59.226 41.667 0.00 0.00 0.00 2.52
3197 5934 5.424252 TGTAATACTTCCTCCGTCCAGAAAT 59.576 40.000 0.00 0.00 0.00 2.17
3198 5935 6.608405 TGTAATACTTCCTCCGTCCAGAAATA 59.392 38.462 0.00 0.00 0.00 1.40
3199 5936 6.555463 AATACTTCCTCCGTCCAGAAATAA 57.445 37.500 0.00 0.00 0.00 1.40
3200 5937 4.903045 ACTTCCTCCGTCCAGAAATAAA 57.097 40.909 0.00 0.00 0.00 1.40
3201 5938 5.437191 ACTTCCTCCGTCCAGAAATAAAT 57.563 39.130 0.00 0.00 0.00 1.40
3202 5939 5.186198 ACTTCCTCCGTCCAGAAATAAATG 58.814 41.667 0.00 0.00 0.00 2.32
3203 5940 5.045869 ACTTCCTCCGTCCAGAAATAAATGA 60.046 40.000 0.00 0.00 0.00 2.57
3204 5941 4.766375 TCCTCCGTCCAGAAATAAATGAC 58.234 43.478 0.00 0.00 0.00 3.06
3205 5942 4.469945 TCCTCCGTCCAGAAATAAATGACT 59.530 41.667 0.00 0.00 0.00 3.41
3206 5943 4.811557 CCTCCGTCCAGAAATAAATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3207 5944 5.414789 TCCGTCCAGAAATAAATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3208 5945 5.800296 TCCGTCCAGAAATAAATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3209 5946 5.874810 TCCGTCCAGAAATAAATGACTCAAG 59.125 40.000 0.00 0.00 0.00 3.02
3210 5947 5.643777 CCGTCCAGAAATAAATGACTCAAGT 59.356 40.000 0.00 0.00 0.00 3.16
3211 5948 6.149474 CCGTCCAGAAATAAATGACTCAAGTT 59.851 38.462 0.00 0.00 0.00 2.66
3212 5949 7.308589 CCGTCCAGAAATAAATGACTCAAGTTT 60.309 37.037 0.00 0.00 0.00 2.66
3213 5950 7.535258 CGTCCAGAAATAAATGACTCAAGTTTG 59.465 37.037 0.00 0.00 0.00 2.93
3214 5951 8.352942 GTCCAGAAATAAATGACTCAAGTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
3215 5952 9.567776 TCCAGAAATAAATGACTCAAGTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3216 5953 9.612620 CCAGAAATAAATGACTCAAGTTTGTAC 57.387 33.333 0.00 0.00 0.00 2.90
3225 5962 7.011828 TGACTCAAGTTTGTACTAACTTTGC 57.988 36.000 26.14 17.51 43.85 3.68
3226 5963 6.596106 TGACTCAAGTTTGTACTAACTTTGCA 59.404 34.615 26.14 19.22 43.85 4.08
3227 5964 6.782150 ACTCAAGTTTGTACTAACTTTGCAC 58.218 36.000 26.14 0.00 43.85 4.57
3228 5965 6.598064 ACTCAAGTTTGTACTAACTTTGCACT 59.402 34.615 26.14 8.03 43.85 4.40
3229 5966 7.767198 ACTCAAGTTTGTACTAACTTTGCACTA 59.233 33.333 26.14 11.32 43.85 2.74
3230 5967 8.495361 TCAAGTTTGTACTAACTTTGCACTAA 57.505 30.769 26.14 8.83 43.85 2.24
3231 5968 8.948145 TCAAGTTTGTACTAACTTTGCACTAAA 58.052 29.630 26.14 8.13 43.85 1.85
3232 5969 9.006215 CAAGTTTGTACTAACTTTGCACTAAAC 57.994 33.333 26.14 9.75 43.85 2.01
3233 5970 8.502105 AGTTTGTACTAACTTTGCACTAAACT 57.498 30.769 15.68 5.33 34.81 2.66
3234 5971 8.953313 AGTTTGTACTAACTTTGCACTAAACTT 58.047 29.630 15.68 0.00 34.81 2.66
3237 5974 9.603921 TTGTACTAACTTTGCACTAAACTTAGT 57.396 29.630 0.00 0.00 44.42 2.24
3266 6003 8.421249 AAATTGAGTCACTTATTTTGGGATGA 57.579 30.769 0.00 0.00 0.00 2.92
3267 6004 8.421249 AATTGAGTCACTTATTTTGGGATGAA 57.579 30.769 0.00 0.00 0.00 2.57
3268 6005 7.452880 TTGAGTCACTTATTTTGGGATGAAG 57.547 36.000 0.00 0.00 0.00 3.02
3269 6006 5.945784 TGAGTCACTTATTTTGGGATGAAGG 59.054 40.000 0.00 0.00 0.00 3.46
3270 6007 5.264395 AGTCACTTATTTTGGGATGAAGGG 58.736 41.667 0.00 0.00 0.00 3.95
3271 6008 5.015178 AGTCACTTATTTTGGGATGAAGGGA 59.985 40.000 0.00 0.00 0.00 4.20
3275 6012 6.543831 CACTTATTTTGGGATGAAGGGAGTAG 59.456 42.308 0.00 0.00 0.00 2.57
3354 6091 5.772521 AGTTGCACATAAAATTGACTGGAC 58.227 37.500 0.00 0.00 0.00 4.02
3531 6269 6.587651 GCAGTTTACTTCTGTTTACCTTACG 58.412 40.000 0.00 0.00 35.60 3.18
3586 6324 5.882557 CCTGATGCAACTTGTATAAGACCTT 59.117 40.000 6.19 0.00 37.36 3.50
3587 6325 6.375455 CCTGATGCAACTTGTATAAGACCTTT 59.625 38.462 6.19 0.00 37.36 3.11
3588 6326 7.552687 CCTGATGCAACTTGTATAAGACCTTTA 59.447 37.037 6.19 0.00 37.36 1.85
3667 6699 1.153958 GGTCATCCGCTTTGCTTGC 60.154 57.895 0.00 0.00 0.00 4.01
3689 6721 1.549170 CTTCTGCGTAACTAGGGGTGT 59.451 52.381 0.00 0.00 0.00 4.16
3707 6739 4.690122 GGTGTAAGTCCAATACAGCGTAT 58.310 43.478 0.82 0.00 40.59 3.06
3840 6872 1.006832 CGTTAAACGAGGGCCTCATG 58.993 55.000 31.69 19.34 46.05 3.07
3915 6947 5.885230 TGGCAGTATGTCTCTTTCATTTG 57.115 39.130 0.00 0.00 44.57 2.32
3923 6955 3.244911 TGTCTCTTTCATTTGGTCTCCCC 60.245 47.826 0.00 0.00 0.00 4.81
3924 6956 2.986019 TCTCTTTCATTTGGTCTCCCCA 59.014 45.455 0.00 0.00 43.27 4.96
3991 8620 4.383173 CATTATCATAGTGCAGTCCAGCA 58.617 43.478 0.00 0.00 43.35 4.41
4025 8654 5.122396 GCTCGATTGTGTACCTCAAAAGATT 59.878 40.000 5.03 0.00 0.00 2.40
4076 8706 6.349300 TGTTCCTTACATCTAGCTTGATTCC 58.651 40.000 8.00 0.00 0.00 3.01
4115 8745 5.852250 AGATACCAAAATGGCCCTACTAGAT 59.148 40.000 0.00 0.00 42.67 1.98
4163 8838 3.129988 GGATGCCAAATTGGAGAGACAAG 59.870 47.826 17.47 0.00 40.96 3.16
4183 8858 8.945193 AGACAAGTAAAAGGGATATATAAGGCA 58.055 33.333 0.00 0.00 0.00 4.75
4188 8863 9.567702 AGTAAAAGGGATATATAAGGCAGATCT 57.432 33.333 0.00 0.00 0.00 2.75
4282 8967 0.391927 CGTGAGGCCACCGGATTAAA 60.392 55.000 9.46 0.00 40.12 1.52
4362 9047 2.212327 CCAGATAGGTGGCTTCGGT 58.788 57.895 0.00 0.00 0.00 4.69
4397 9082 2.074576 CATGCTGTCAGACTCTGTTGG 58.925 52.381 3.32 0.00 32.61 3.77
4403 9088 5.422012 TGCTGTCAGACTCTGTTGGATAATA 59.578 40.000 3.32 0.00 32.61 0.98
4424 9109 9.865321 ATAATAATAAAGATGGTTGCATGCATC 57.135 29.630 23.37 20.66 0.00 3.91
4425 9110 2.572191 AAAGATGGTTGCATGCATCG 57.428 45.000 23.37 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.159254 AGGGTCTCTTTGATTTAAAGGATTTTT 57.841 29.630 1.56 0.00 44.75 1.94
16 17 8.727100 AGGGTCTCTTTGATTTAAAGGATTTT 57.273 30.769 1.56 0.00 44.75 1.82
17 18 9.822727 TTAGGGTCTCTTTGATTTAAAGGATTT 57.177 29.630 1.56 0.00 44.75 2.17
18 19 9.822727 TTTAGGGTCTCTTTGATTTAAAGGATT 57.177 29.630 1.56 0.00 44.75 3.01
19 20 9.997172 ATTTAGGGTCTCTTTGATTTAAAGGAT 57.003 29.630 1.56 0.00 44.75 3.24
29 30 9.901172 GGAGTAAAATATTTAGGGTCTCTTTGA 57.099 33.333 0.01 0.00 0.00 2.69
30 31 9.121658 GGGAGTAAAATATTTAGGGTCTCTTTG 57.878 37.037 0.01 0.00 0.00 2.77
31 32 9.070210 AGGGAGTAAAATATTTAGGGTCTCTTT 57.930 33.333 0.01 0.00 0.00 2.52
32 33 8.640033 AGGGAGTAAAATATTTAGGGTCTCTT 57.360 34.615 0.01 0.00 0.00 2.85
33 34 7.292827 GGAGGGAGTAAAATATTTAGGGTCTCT 59.707 40.741 0.01 1.95 0.00 3.10
34 35 7.451732 GGAGGGAGTAAAATATTTAGGGTCTC 58.548 42.308 0.01 5.29 0.00 3.36
35 36 6.042897 CGGAGGGAGTAAAATATTTAGGGTCT 59.957 42.308 0.01 0.00 0.00 3.85
36 37 6.228995 CGGAGGGAGTAAAATATTTAGGGTC 58.771 44.000 0.01 0.00 0.00 4.46
37 38 5.455755 GCGGAGGGAGTAAAATATTTAGGGT 60.456 44.000 0.01 0.00 0.00 4.34
38 39 5.001874 GCGGAGGGAGTAAAATATTTAGGG 58.998 45.833 0.01 0.00 0.00 3.53
39 40 5.866207 AGCGGAGGGAGTAAAATATTTAGG 58.134 41.667 0.01 0.00 0.00 2.69
40 41 5.932883 GGAGCGGAGGGAGTAAAATATTTAG 59.067 44.000 0.01 0.00 0.00 1.85
41 42 5.605488 AGGAGCGGAGGGAGTAAAATATTTA 59.395 40.000 0.01 0.00 0.00 1.40
42 43 4.412528 AGGAGCGGAGGGAGTAAAATATTT 59.587 41.667 0.00 0.00 0.00 1.40
43 44 3.974642 AGGAGCGGAGGGAGTAAAATATT 59.025 43.478 0.00 0.00 0.00 1.28
44 45 3.588569 AGGAGCGGAGGGAGTAAAATAT 58.411 45.455 0.00 0.00 0.00 1.28
45 46 3.042059 AGGAGCGGAGGGAGTAAAATA 57.958 47.619 0.00 0.00 0.00 1.40
46 47 1.880941 AGGAGCGGAGGGAGTAAAAT 58.119 50.000 0.00 0.00 0.00 1.82
47 48 2.537633 TAGGAGCGGAGGGAGTAAAA 57.462 50.000 0.00 0.00 0.00 1.52
48 49 2.537633 TTAGGAGCGGAGGGAGTAAA 57.462 50.000 0.00 0.00 0.00 2.01
49 50 2.537633 TTTAGGAGCGGAGGGAGTAA 57.462 50.000 0.00 0.00 0.00 2.24
50 51 2.769602 ATTTAGGAGCGGAGGGAGTA 57.230 50.000 0.00 0.00 0.00 2.59
51 52 1.880941 AATTTAGGAGCGGAGGGAGT 58.119 50.000 0.00 0.00 0.00 3.85
52 53 4.040461 TCATAAATTTAGGAGCGGAGGGAG 59.960 45.833 8.43 0.00 0.00 4.30
53 54 3.971305 TCATAAATTTAGGAGCGGAGGGA 59.029 43.478 8.43 0.00 0.00 4.20
54 55 4.351874 TCATAAATTTAGGAGCGGAGGG 57.648 45.455 8.43 0.00 0.00 4.30
55 56 4.211374 CGTTCATAAATTTAGGAGCGGAGG 59.789 45.833 29.50 12.21 41.91 4.30
56 57 5.330271 CGTTCATAAATTTAGGAGCGGAG 57.670 43.478 29.50 11.53 41.91 4.63
59 60 3.875134 ACCCGTTCATAAATTTAGGAGCG 59.125 43.478 29.92 29.92 44.03 5.03
60 61 5.818857 TGTACCCGTTCATAAATTTAGGAGC 59.181 40.000 14.44 14.44 0.00 4.70
61 62 8.985805 GTATGTACCCGTTCATAAATTTAGGAG 58.014 37.037 11.94 4.41 0.00 3.69
62 63 7.652909 CGTATGTACCCGTTCATAAATTTAGGA 59.347 37.037 8.43 8.43 0.00 2.94
63 64 7.095523 CCGTATGTACCCGTTCATAAATTTAGG 60.096 40.741 3.46 3.46 0.00 2.69
64 65 7.652909 TCCGTATGTACCCGTTCATAAATTTAG 59.347 37.037 3.94 0.00 0.00 1.85
65 66 7.495901 TCCGTATGTACCCGTTCATAAATTTA 58.504 34.615 0.00 0.00 0.00 1.40
66 67 6.347696 TCCGTATGTACCCGTTCATAAATTT 58.652 36.000 0.00 0.00 0.00 1.82
67 68 5.916318 TCCGTATGTACCCGTTCATAAATT 58.084 37.500 0.00 0.00 0.00 1.82
68 69 5.534207 TCCGTATGTACCCGTTCATAAAT 57.466 39.130 0.00 0.00 0.00 1.40
69 70 4.998671 TCCGTATGTACCCGTTCATAAA 57.001 40.909 0.00 0.00 0.00 1.40
70 71 5.534207 AATCCGTATGTACCCGTTCATAA 57.466 39.130 0.00 0.00 0.00 1.90
71 72 5.534207 AAATCCGTATGTACCCGTTCATA 57.466 39.130 0.00 0.00 0.00 2.15
72 73 4.411256 AAATCCGTATGTACCCGTTCAT 57.589 40.909 0.00 0.00 0.00 2.57
73 74 3.891422 AAATCCGTATGTACCCGTTCA 57.109 42.857 0.00 0.00 0.00 3.18
74 75 5.232838 CACTAAAATCCGTATGTACCCGTTC 59.767 44.000 0.00 0.00 0.00 3.95
75 76 5.111293 CACTAAAATCCGTATGTACCCGTT 58.889 41.667 0.00 0.00 0.00 4.44
76 77 4.160252 ACACTAAAATCCGTATGTACCCGT 59.840 41.667 0.00 0.00 0.00 5.28
77 78 4.685924 ACACTAAAATCCGTATGTACCCG 58.314 43.478 0.00 0.00 0.00 5.28
78 79 8.553696 CAAATACACTAAAATCCGTATGTACCC 58.446 37.037 0.00 0.00 0.00 3.69
79 80 9.101655 ACAAATACACTAAAATCCGTATGTACC 57.898 33.333 0.00 0.00 0.00 3.34
82 83 9.221933 TGAACAAATACACTAAAATCCGTATGT 57.778 29.630 0.00 0.00 0.00 2.29
83 84 9.485591 GTGAACAAATACACTAAAATCCGTATG 57.514 33.333 0.00 0.00 34.65 2.39
84 85 9.444600 AGTGAACAAATACACTAAAATCCGTAT 57.555 29.630 0.00 0.00 44.06 3.06
85 86 8.836268 AGTGAACAAATACACTAAAATCCGTA 57.164 30.769 0.00 0.00 44.06 4.02
86 87 7.359765 CGAGTGAACAAATACACTAAAATCCGT 60.360 37.037 0.00 0.00 45.54 4.69
87 88 6.953743 CGAGTGAACAAATACACTAAAATCCG 59.046 38.462 0.00 0.00 45.54 4.18
88 89 7.803724 ACGAGTGAACAAATACACTAAAATCC 58.196 34.615 0.00 0.00 45.54 3.01
89 90 9.659830 AAACGAGTGAACAAATACACTAAAATC 57.340 29.630 0.00 0.00 45.54 2.17
90 91 9.659830 GAAACGAGTGAACAAATACACTAAAAT 57.340 29.630 0.00 0.00 45.54 1.82
91 92 8.666573 TGAAACGAGTGAACAAATACACTAAAA 58.333 29.630 0.00 0.00 45.54 1.52
92 93 8.199176 TGAAACGAGTGAACAAATACACTAAA 57.801 30.769 0.00 0.00 45.54 1.85
93 94 7.493320 ACTGAAACGAGTGAACAAATACACTAA 59.507 33.333 0.00 0.00 45.54 2.24
94 95 6.982141 ACTGAAACGAGTGAACAAATACACTA 59.018 34.615 0.00 0.00 45.54 2.74
96 97 6.044512 ACTGAAACGAGTGAACAAATACAC 57.955 37.500 0.00 0.00 37.30 2.90
97 98 5.235616 GGACTGAAACGAGTGAACAAATACA 59.764 40.000 0.00 0.00 0.00 2.29
98 99 5.611844 CGGACTGAAACGAGTGAACAAATAC 60.612 44.000 0.00 0.00 0.00 1.89
99 100 4.446385 CGGACTGAAACGAGTGAACAAATA 59.554 41.667 0.00 0.00 0.00 1.40
100 101 3.247648 CGGACTGAAACGAGTGAACAAAT 59.752 43.478 0.00 0.00 0.00 2.32
101 102 2.605818 CGGACTGAAACGAGTGAACAAA 59.394 45.455 0.00 0.00 0.00 2.83
102 103 2.198406 CGGACTGAAACGAGTGAACAA 58.802 47.619 0.00 0.00 0.00 2.83
103 104 1.135527 ACGGACTGAAACGAGTGAACA 59.864 47.619 0.00 0.00 0.00 3.18
104 105 1.849097 ACGGACTGAAACGAGTGAAC 58.151 50.000 0.00 0.00 0.00 3.18
105 106 3.005050 ACATACGGACTGAAACGAGTGAA 59.995 43.478 0.00 0.00 0.00 3.18
106 107 2.555325 ACATACGGACTGAAACGAGTGA 59.445 45.455 0.00 0.00 0.00 3.41
107 108 2.942710 ACATACGGACTGAAACGAGTG 58.057 47.619 0.00 0.00 0.00 3.51
108 109 3.755378 AGTACATACGGACTGAAACGAGT 59.245 43.478 0.00 0.00 0.00 4.18
109 110 4.352600 AGTACATACGGACTGAAACGAG 57.647 45.455 0.00 0.00 0.00 4.18
110 111 4.216042 TGAAGTACATACGGACTGAAACGA 59.784 41.667 0.00 0.00 0.00 3.85
111 112 4.478699 TGAAGTACATACGGACTGAAACG 58.521 43.478 0.00 0.00 0.00 3.60
112 113 5.867716 ACATGAAGTACATACGGACTGAAAC 59.132 40.000 0.00 0.00 37.46 2.78
113 114 6.032956 ACATGAAGTACATACGGACTGAAA 57.967 37.500 0.00 0.00 37.46 2.69
114 115 5.654603 ACATGAAGTACATACGGACTGAA 57.345 39.130 0.00 0.00 37.46 3.02
115 116 5.654603 AACATGAAGTACATACGGACTGA 57.345 39.130 0.00 0.00 37.46 3.41
116 117 7.821595 TTTAACATGAAGTACATACGGACTG 57.178 36.000 0.00 0.00 37.46 3.51
130 131 9.751542 ACGGTGTTTTTGATATTTTAACATGAA 57.248 25.926 0.00 0.00 32.10 2.57
143 144 7.908082 CGTTCATGAATATACGGTGTTTTTGAT 59.092 33.333 12.12 0.00 0.00 2.57
144 145 7.237871 CGTTCATGAATATACGGTGTTTTTGA 58.762 34.615 12.12 0.00 0.00 2.69
145 146 6.467682 CCGTTCATGAATATACGGTGTTTTTG 59.532 38.462 22.83 1.55 46.25 2.44
146 147 6.548171 CCGTTCATGAATATACGGTGTTTTT 58.452 36.000 22.83 0.00 46.25 1.94
147 148 6.114221 CCGTTCATGAATATACGGTGTTTT 57.886 37.500 22.83 0.00 46.25 2.43
148 149 5.728351 CCGTTCATGAATATACGGTGTTT 57.272 39.130 22.83 0.00 46.25 2.83
154 155 6.003234 ACTCTCTCCGTTCATGAATATACG 57.997 41.667 12.12 10.95 0.00 3.06
155 156 7.016466 CGTACTCTCTCCGTTCATGAATATAC 58.984 42.308 12.12 0.00 0.00 1.47
156 157 6.709397 ACGTACTCTCTCCGTTCATGAATATA 59.291 38.462 12.12 0.00 0.00 0.86
157 158 5.531659 ACGTACTCTCTCCGTTCATGAATAT 59.468 40.000 12.12 0.00 0.00 1.28
158 159 4.880120 ACGTACTCTCTCCGTTCATGAATA 59.120 41.667 12.12 0.00 0.00 1.75
159 160 3.695060 ACGTACTCTCTCCGTTCATGAAT 59.305 43.478 12.12 0.00 0.00 2.57
160 161 3.079578 ACGTACTCTCTCCGTTCATGAA 58.920 45.455 3.38 3.38 0.00 2.57
161 162 2.708051 ACGTACTCTCTCCGTTCATGA 58.292 47.619 0.00 0.00 0.00 3.07
162 163 3.489180 AACGTACTCTCTCCGTTCATG 57.511 47.619 0.00 0.00 40.46 3.07
163 164 3.255149 ACAAACGTACTCTCTCCGTTCAT 59.745 43.478 0.00 0.00 43.32 2.57
164 165 2.620115 ACAAACGTACTCTCTCCGTTCA 59.380 45.455 0.00 0.00 43.32 3.18
165 166 3.279853 ACAAACGTACTCTCTCCGTTC 57.720 47.619 0.00 0.00 43.32 3.95
166 167 4.456911 TCATACAAACGTACTCTCTCCGTT 59.543 41.667 0.00 0.00 45.76 4.44
167 168 4.005650 TCATACAAACGTACTCTCTCCGT 58.994 43.478 0.00 0.00 36.17 4.69
168 169 4.094590 ACTCATACAAACGTACTCTCTCCG 59.905 45.833 0.00 0.00 0.00 4.63
169 170 5.564048 ACTCATACAAACGTACTCTCTCC 57.436 43.478 0.00 0.00 0.00 3.71
170 171 7.401080 GTCTACTCATACAAACGTACTCTCTC 58.599 42.308 0.00 0.00 0.00 3.20
171 172 6.035866 CGTCTACTCATACAAACGTACTCTCT 59.964 42.308 0.00 0.00 0.00 3.10
172 173 6.183360 ACGTCTACTCATACAAACGTACTCTC 60.183 42.308 0.00 0.00 41.08 3.20
173 174 5.641209 ACGTCTACTCATACAAACGTACTCT 59.359 40.000 0.00 0.00 41.08 3.24
174 175 5.731723 CACGTCTACTCATACAAACGTACTC 59.268 44.000 0.00 0.00 40.94 2.59
175 176 5.409520 TCACGTCTACTCATACAAACGTACT 59.590 40.000 0.00 0.00 40.94 2.73
176 177 5.621422 TCACGTCTACTCATACAAACGTAC 58.379 41.667 0.00 0.00 40.94 3.67
177 178 5.861222 TCACGTCTACTCATACAAACGTA 57.139 39.130 0.00 0.00 40.94 3.57
178 179 4.754372 TCACGTCTACTCATACAAACGT 57.246 40.909 0.00 0.00 43.37 3.99
179 180 6.627690 AAATCACGTCTACTCATACAAACG 57.372 37.500 0.00 0.00 36.29 3.60
208 209 6.512741 GCTTCACAAATCACGTCTCCTAAAAA 60.513 38.462 0.00 0.00 0.00 1.94
209 210 5.049680 GCTTCACAAATCACGTCTCCTAAAA 60.050 40.000 0.00 0.00 0.00 1.52
210 211 4.451096 GCTTCACAAATCACGTCTCCTAAA 59.549 41.667 0.00 0.00 0.00 1.85
211 212 3.994392 GCTTCACAAATCACGTCTCCTAA 59.006 43.478 0.00 0.00 0.00 2.69
212 213 3.585862 GCTTCACAAATCACGTCTCCTA 58.414 45.455 0.00 0.00 0.00 2.94
213 214 2.417719 GCTTCACAAATCACGTCTCCT 58.582 47.619 0.00 0.00 0.00 3.69
214 215 1.126846 CGCTTCACAAATCACGTCTCC 59.873 52.381 0.00 0.00 0.00 3.71
215 216 1.462541 GCGCTTCACAAATCACGTCTC 60.463 52.381 0.00 0.00 0.00 3.36
219 220 0.235665 ACTGCGCTTCACAAATCACG 59.764 50.000 9.73 0.00 0.00 4.35
224 225 3.059188 GCTAGTTTACTGCGCTTCACAAA 60.059 43.478 9.73 0.00 0.00 2.83
234 235 1.345176 CAGCGCGCTAGTTTACTGC 59.655 57.895 36.02 0.00 0.00 4.40
235 236 0.736325 ACCAGCGCGCTAGTTTACTG 60.736 55.000 36.02 19.52 0.00 2.74
262 263 1.532090 CGTCGGAAGAGACCATCGAAG 60.532 57.143 0.00 0.00 43.49 3.79
279 280 1.131826 CGTGTTCAAATCCGGCGTC 59.868 57.895 6.01 0.00 0.00 5.19
297 298 0.739561 ACTGCTACGTACTGCTAGGC 59.260 55.000 8.13 1.61 0.00 3.93
308 309 3.435327 TGGACATGCTTTTAACTGCTACG 59.565 43.478 0.00 0.00 0.00 3.51
322 323 6.971527 TTGATTGATTTGATTTGGACATGC 57.028 33.333 0.00 0.00 0.00 4.06
329 330 8.123575 TGCTGTTTGTTTGATTGATTTGATTTG 58.876 29.630 0.00 0.00 0.00 2.32
330 331 8.211116 TGCTGTTTGTTTGATTGATTTGATTT 57.789 26.923 0.00 0.00 0.00 2.17
331 332 7.496591 ACTGCTGTTTGTTTGATTGATTTGATT 59.503 29.630 0.00 0.00 0.00 2.57
332 333 6.987992 ACTGCTGTTTGTTTGATTGATTTGAT 59.012 30.769 0.00 0.00 0.00 2.57
333 334 6.339730 ACTGCTGTTTGTTTGATTGATTTGA 58.660 32.000 0.00 0.00 0.00 2.69
334 335 6.592798 ACTGCTGTTTGTTTGATTGATTTG 57.407 33.333 0.00 0.00 0.00 2.32
456 457 1.623973 GAACCTAGACGTGCCGTTGC 61.624 60.000 0.00 0.00 41.37 4.17
540 548 6.128715 GGTCTAGTTTTAGCCAACGTAACTTC 60.129 42.308 3.20 0.00 31.94 3.01
750 3134 9.076596 GCTATGAATCTTTTTGAGCGTTTATTT 57.923 29.630 0.00 0.00 0.00 1.40
756 3140 6.985188 TTAGCTATGAATCTTTTTGAGCGT 57.015 33.333 0.00 0.00 33.69 5.07
777 3161 2.557317 GCAGTTACCGGCAGCTAATTA 58.443 47.619 0.00 0.00 0.00 1.40
799 3183 5.235186 CGACTCTATTGCCAAAATACAGGAG 59.765 44.000 0.00 0.00 0.00 3.69
802 3186 4.332543 TGCGACTCTATTGCCAAAATACAG 59.667 41.667 0.00 0.00 36.80 2.74
897 3292 1.203075 AGGAAGGGTTGACGAGAGAGT 60.203 52.381 0.00 0.00 0.00 3.24
907 3302 2.112190 GTAGGAGAGGAGGAAGGGTTG 58.888 57.143 0.00 0.00 0.00 3.77
928 3323 0.036448 TCCCTTGAGTCGAGTCGAGT 59.964 55.000 28.13 22.49 42.52 4.18
929 3324 1.131504 CTTCCCTTGAGTCGAGTCGAG 59.868 57.143 25.16 25.16 36.23 4.04
930 3325 1.166129 CTTCCCTTGAGTCGAGTCGA 58.834 55.000 12.09 12.09 0.00 4.20
931 3326 0.882474 ACTTCCCTTGAGTCGAGTCG 59.118 55.000 15.29 6.09 0.00 4.18
932 3327 1.887198 TCACTTCCCTTGAGTCGAGTC 59.113 52.381 13.54 13.54 0.00 3.36
969 3364 4.280819 CCCACCTGAATGGAATATGTTGT 58.719 43.478 0.00 0.00 43.02 3.32
993 3400 2.423446 GCCCCCAGCATCTCTACG 59.577 66.667 0.00 0.00 42.97 3.51
1145 3552 3.507143 AACAGGGAGGGGCTGAGGT 62.507 63.158 0.00 0.00 0.00 3.85
1256 3665 4.723309 AGGGCCATTAATTGTTTTGCAAA 58.277 34.783 8.05 8.05 40.91 3.68
1559 4004 6.694844 TGTATACGCGACAAACCGATAATAAA 59.305 34.615 15.93 0.00 0.00 1.40
1567 4012 2.409378 ACTTTGTATACGCGACAAACCG 59.591 45.455 15.93 10.92 40.85 4.44
1568 4013 5.308147 GTTACTTTGTATACGCGACAAACC 58.692 41.667 15.93 2.26 40.85 3.27
1569 4014 5.002739 CGTTACTTTGTATACGCGACAAAC 58.997 41.667 15.93 7.34 40.85 2.93
1570 4015 4.679197 ACGTTACTTTGTATACGCGACAAA 59.321 37.500 15.93 18.29 42.88 2.83
1814 4279 8.254508 AGGATCACTACTGTATTCTTGTTCTTC 58.745 37.037 0.00 0.00 0.00 2.87
1843 4328 1.303317 GGTTCAGTGTTCCGGGCAT 60.303 57.895 0.00 0.00 0.00 4.40
1905 4400 1.611261 TCTGTAGGGGTCCGGGTTG 60.611 63.158 0.00 0.00 0.00 3.77
1959 4454 1.676529 TCGATGATCTCCTTGACGTCC 59.323 52.381 14.12 0.00 0.00 4.79
2033 4528 2.943690 TGACTGATAGTGACTAGTCCGC 59.056 50.000 20.11 12.66 38.96 5.54
2034 4529 4.193090 AGTGACTGATAGTGACTAGTCCG 58.807 47.826 20.11 3.99 40.86 4.79
2035 4530 7.627298 TTTAGTGACTGATAGTGACTAGTCC 57.373 40.000 20.11 11.29 43.76 3.85
2036 4531 8.512956 TGTTTTAGTGACTGATAGTGACTAGTC 58.487 37.037 16.32 16.32 43.76 2.59
2037 4532 8.405418 TGTTTTAGTGACTGATAGTGACTAGT 57.595 34.615 0.00 0.00 43.76 2.57
2038 4533 8.731605 TCTGTTTTAGTGACTGATAGTGACTAG 58.268 37.037 8.01 0.00 43.76 2.57
2039 4534 8.631480 TCTGTTTTAGTGACTGATAGTGACTA 57.369 34.615 4.53 4.53 40.86 2.59
2040 4535 7.526142 TCTGTTTTAGTGACTGATAGTGACT 57.474 36.000 6.35 6.35 44.67 3.41
2047 4561 5.474578 TCTGCTCTGTTTTAGTGACTGAT 57.525 39.130 0.00 0.00 0.00 2.90
2072 4586 2.989639 CTCCGCACATGGGAGGAA 59.010 61.111 21.62 5.85 45.97 3.36
2083 4597 2.752640 TACTACTGCCGCTCCGCA 60.753 61.111 0.00 0.00 37.19 5.69
2097 4611 2.069273 GCTCACGTCATTTGCAGTACT 58.931 47.619 0.00 0.00 0.00 2.73
2101 4615 3.670500 CTGCTCACGTCATTTGCAG 57.330 52.632 9.31 9.31 43.71 4.41
2106 4620 0.319728 ACTCTGCTGCTCACGTCATT 59.680 50.000 0.00 0.00 0.00 2.57
2145 4659 3.567579 ATCCCACCAACACCCTGCG 62.568 63.158 0.00 0.00 0.00 5.18
2263 4777 1.541310 CCCAGAAGTGGCTACCGACA 61.541 60.000 0.00 0.00 43.44 4.35
2269 4783 1.550130 CGAACCCCCAGAAGTGGCTA 61.550 60.000 0.00 0.00 43.44 3.93
2355 4869 4.120331 GTTGCCGATGCCCTGTGC 62.120 66.667 0.00 0.00 41.77 4.57
2361 4875 4.256090 GATGCCGTTGCCGATGCC 62.256 66.667 0.00 0.00 36.33 4.40
2366 4880 2.978452 CTAGAGGGATGCCGTTGCCG 62.978 65.000 0.00 0.00 36.33 5.69
2367 4881 1.227674 CTAGAGGGATGCCGTTGCC 60.228 63.158 0.00 0.00 36.33 4.52
2368 4882 0.107654 AACTAGAGGGATGCCGTTGC 60.108 55.000 0.00 0.00 38.26 4.17
2369 4883 1.066143 ACAACTAGAGGGATGCCGTTG 60.066 52.381 16.49 16.49 38.10 4.10
2370 4884 1.207329 GACAACTAGAGGGATGCCGTT 59.793 52.381 0.00 0.00 0.00 4.44
2371 4885 0.824759 GACAACTAGAGGGATGCCGT 59.175 55.000 0.00 0.00 0.00 5.68
2372 4886 0.824109 TGACAACTAGAGGGATGCCG 59.176 55.000 0.00 0.00 0.00 5.69
2373 4887 1.834263 AGTGACAACTAGAGGGATGCC 59.166 52.381 0.00 0.00 33.79 4.40
2374 4888 3.196685 AGAAGTGACAACTAGAGGGATGC 59.803 47.826 0.00 0.00 34.77 3.91
2375 4889 5.413309 AAGAAGTGACAACTAGAGGGATG 57.587 43.478 0.00 0.00 34.77 3.51
2376 4890 4.158764 CGAAGAAGTGACAACTAGAGGGAT 59.841 45.833 0.00 0.00 34.77 3.85
2377 4891 3.506455 CGAAGAAGTGACAACTAGAGGGA 59.494 47.826 0.00 0.00 34.77 4.20
2378 4892 3.256136 ACGAAGAAGTGACAACTAGAGGG 59.744 47.826 0.00 0.00 34.77 4.30
2379 4893 4.506886 ACGAAGAAGTGACAACTAGAGG 57.493 45.455 0.00 0.00 34.77 3.69
2380 4894 5.569823 GCTAACGAAGAAGTGACAACTAGAG 59.430 44.000 0.00 0.00 34.77 2.43
2381 4895 5.458891 GCTAACGAAGAAGTGACAACTAGA 58.541 41.667 0.00 0.00 34.77 2.43
2382 4896 4.621886 GGCTAACGAAGAAGTGACAACTAG 59.378 45.833 0.00 0.00 34.77 2.57
2383 4897 4.553323 GGCTAACGAAGAAGTGACAACTA 58.447 43.478 0.00 0.00 34.77 2.24
2384 4898 3.391049 GGCTAACGAAGAAGTGACAACT 58.609 45.455 0.00 0.00 38.71 3.16
2385 4899 2.479275 GGGCTAACGAAGAAGTGACAAC 59.521 50.000 0.00 0.00 0.00 3.32
2386 4900 2.367567 AGGGCTAACGAAGAAGTGACAA 59.632 45.455 0.00 0.00 0.00 3.18
2387 4901 1.968493 AGGGCTAACGAAGAAGTGACA 59.032 47.619 0.00 0.00 0.00 3.58
2388 4902 2.745515 AGGGCTAACGAAGAAGTGAC 57.254 50.000 0.00 0.00 0.00 3.67
2389 4903 3.764237 AAAGGGCTAACGAAGAAGTGA 57.236 42.857 0.00 0.00 0.00 3.41
2390 4904 4.515567 AGAAAAAGGGCTAACGAAGAAGTG 59.484 41.667 0.00 0.00 0.00 3.16
2391 4905 4.715713 AGAAAAAGGGCTAACGAAGAAGT 58.284 39.130 0.00 0.00 0.00 3.01
2392 4906 5.690997 AAGAAAAAGGGCTAACGAAGAAG 57.309 39.130 0.00 0.00 0.00 2.85
2393 4907 5.826208 AGAAAGAAAAAGGGCTAACGAAGAA 59.174 36.000 0.00 0.00 0.00 2.52
2394 4908 5.374071 AGAAAGAAAAAGGGCTAACGAAGA 58.626 37.500 0.00 0.00 0.00 2.87
2395 4909 5.690997 AGAAAGAAAAAGGGCTAACGAAG 57.309 39.130 0.00 0.00 0.00 3.79
2396 4910 6.270064 CAAAGAAAGAAAAAGGGCTAACGAA 58.730 36.000 0.00 0.00 0.00 3.85
2397 4911 5.735070 GCAAAGAAAGAAAAAGGGCTAACGA 60.735 40.000 0.00 0.00 0.00 3.85
2398 4912 4.444388 GCAAAGAAAGAAAAAGGGCTAACG 59.556 41.667 0.00 0.00 0.00 3.18
2399 4913 5.463392 CAGCAAAGAAAGAAAAAGGGCTAAC 59.537 40.000 0.00 0.00 0.00 2.34
2400 4914 5.362430 TCAGCAAAGAAAGAAAAAGGGCTAA 59.638 36.000 0.00 0.00 0.00 3.09
2401 4915 4.892934 TCAGCAAAGAAAGAAAAAGGGCTA 59.107 37.500 0.00 0.00 0.00 3.93
2402 4916 3.706086 TCAGCAAAGAAAGAAAAAGGGCT 59.294 39.130 0.00 0.00 0.00 5.19
2403 4917 3.804325 GTCAGCAAAGAAAGAAAAAGGGC 59.196 43.478 0.00 0.00 0.00 5.19
2404 4918 4.141959 TGGTCAGCAAAGAAAGAAAAAGGG 60.142 41.667 0.00 0.00 0.00 3.95
2405 4919 4.805719 GTGGTCAGCAAAGAAAGAAAAAGG 59.194 41.667 0.00 0.00 0.00 3.11
2406 4920 5.654497 AGTGGTCAGCAAAGAAAGAAAAAG 58.346 37.500 0.00 0.00 0.00 2.27
2407 4921 5.659440 AGTGGTCAGCAAAGAAAGAAAAA 57.341 34.783 0.00 0.00 0.00 1.94
2408 4922 5.047377 ACAAGTGGTCAGCAAAGAAAGAAAA 60.047 36.000 0.00 0.00 0.00 2.29
2409 4923 4.462483 ACAAGTGGTCAGCAAAGAAAGAAA 59.538 37.500 0.00 0.00 0.00 2.52
2410 4924 4.016444 ACAAGTGGTCAGCAAAGAAAGAA 58.984 39.130 0.00 0.00 0.00 2.52
2411 4925 3.620488 ACAAGTGGTCAGCAAAGAAAGA 58.380 40.909 0.00 0.00 0.00 2.52
2412 4926 5.455392 CATACAAGTGGTCAGCAAAGAAAG 58.545 41.667 0.00 0.00 0.00 2.62
2413 4927 4.261572 GCATACAAGTGGTCAGCAAAGAAA 60.262 41.667 0.00 0.00 31.75 2.52
2414 4928 3.253188 GCATACAAGTGGTCAGCAAAGAA 59.747 43.478 0.00 0.00 31.75 2.52
2415 4929 2.813754 GCATACAAGTGGTCAGCAAAGA 59.186 45.455 0.00 0.00 31.75 2.52
2416 4930 2.553602 TGCATACAAGTGGTCAGCAAAG 59.446 45.455 0.00 0.00 36.74 2.77
2417 4931 2.580962 TGCATACAAGTGGTCAGCAAA 58.419 42.857 0.00 0.00 36.74 3.68
2694 5232 5.389098 CCGTTTTTAATGTCTCGAACGATGT 60.389 40.000 7.86 0.00 41.47 3.06
2874 5413 8.164070 ACAAGTATTTTTGGACAGAAGGAGTAT 58.836 33.333 0.00 0.00 32.32 2.12
2879 5418 5.468746 TCGACAAGTATTTTTGGACAGAAGG 59.531 40.000 0.00 0.00 32.32 3.46
2882 5421 5.468746 CCTTCGACAAGTATTTTTGGACAGA 59.531 40.000 0.00 0.00 32.32 3.41
2884 5423 5.369833 TCCTTCGACAAGTATTTTTGGACA 58.630 37.500 0.00 0.00 32.32 4.02
2885 5424 5.934935 TCCTTCGACAAGTATTTTTGGAC 57.065 39.130 0.00 0.00 32.32 4.02
2886 5425 8.801882 ATATTCCTTCGACAAGTATTTTTGGA 57.198 30.769 0.00 0.00 32.32 3.53
2953 5492 9.906660 TCGAAAATACTTGTTAAAGAAATGCAT 57.093 25.926 0.00 0.00 36.84 3.96
2954 5493 9.737427 TTCGAAAATACTTGTTAAAGAAATGCA 57.263 25.926 0.00 0.00 36.84 3.96
2955 5494 9.989394 GTTCGAAAATACTTGTTAAAGAAATGC 57.011 29.630 0.00 0.00 36.84 3.56
2957 5496 9.389570 CCGTTCGAAAATACTTGTTAAAGAAAT 57.610 29.630 0.00 0.00 36.84 2.17
2958 5497 8.610896 TCCGTTCGAAAATACTTGTTAAAGAAA 58.389 29.630 0.00 0.00 36.84 2.52
2959 5498 8.140677 TCCGTTCGAAAATACTTGTTAAAGAA 57.859 30.769 0.00 0.00 36.84 2.52
2960 5499 7.712264 TCCGTTCGAAAATACTTGTTAAAGA 57.288 32.000 0.00 0.00 36.84 2.52
2961 5500 7.532884 CCTTCCGTTCGAAAATACTTGTTAAAG 59.467 37.037 0.00 0.00 39.49 1.85
2962 5501 7.226325 TCCTTCCGTTCGAAAATACTTGTTAAA 59.774 33.333 0.00 0.00 0.00 1.52
2963 5502 6.705381 TCCTTCCGTTCGAAAATACTTGTTAA 59.295 34.615 0.00 0.00 0.00 2.01
2964 5503 6.222389 TCCTTCCGTTCGAAAATACTTGTTA 58.778 36.000 0.00 0.00 0.00 2.41
2965 5504 5.058490 TCCTTCCGTTCGAAAATACTTGTT 58.942 37.500 0.00 0.00 0.00 2.83
2966 5505 4.634199 TCCTTCCGTTCGAAAATACTTGT 58.366 39.130 0.00 0.00 0.00 3.16
2967 5506 4.689345 ACTCCTTCCGTTCGAAAATACTTG 59.311 41.667 0.00 0.00 0.00 3.16
2968 5507 4.891260 ACTCCTTCCGTTCGAAAATACTT 58.109 39.130 0.00 0.00 0.00 2.24
2969 5508 4.532314 ACTCCTTCCGTTCGAAAATACT 57.468 40.909 0.00 0.00 0.00 2.12
2970 5509 5.405797 AGTACTCCTTCCGTTCGAAAATAC 58.594 41.667 0.00 0.00 0.00 1.89
2971 5510 5.649782 AGTACTCCTTCCGTTCGAAAATA 57.350 39.130 0.00 0.00 0.00 1.40
2972 5511 4.532314 AGTACTCCTTCCGTTCGAAAAT 57.468 40.909 0.00 0.00 0.00 1.82
2973 5512 4.326504 AAGTACTCCTTCCGTTCGAAAA 57.673 40.909 0.00 0.00 0.00 2.29
2974 5513 4.520492 ACTAAGTACTCCTTCCGTTCGAAA 59.480 41.667 0.00 0.00 34.46 3.46
2975 5514 4.074970 ACTAAGTACTCCTTCCGTTCGAA 58.925 43.478 0.00 0.00 34.46 3.71
2976 5515 3.679389 ACTAAGTACTCCTTCCGTTCGA 58.321 45.455 0.00 0.00 34.46 3.71
2977 5516 4.431661 AACTAAGTACTCCTTCCGTTCG 57.568 45.455 0.00 0.00 34.46 3.95
2978 5517 5.776744 TCAAACTAAGTACTCCTTCCGTTC 58.223 41.667 0.00 0.00 34.46 3.95
2979 5518 5.796424 TCAAACTAAGTACTCCTTCCGTT 57.204 39.130 0.00 0.00 34.46 4.44
2980 5519 5.796424 TTCAAACTAAGTACTCCTTCCGT 57.204 39.130 0.00 0.00 34.46 4.69
2981 5520 5.987347 TGTTTCAAACTAAGTACTCCTTCCG 59.013 40.000 1.10 0.00 34.46 4.30
2982 5521 6.073167 GCTGTTTCAAACTAAGTACTCCTTCC 60.073 42.308 1.10 0.00 34.46 3.46
2983 5522 6.706716 AGCTGTTTCAAACTAAGTACTCCTTC 59.293 38.462 1.10 0.00 34.46 3.46
2984 5523 6.592870 AGCTGTTTCAAACTAAGTACTCCTT 58.407 36.000 1.10 0.00 37.17 3.36
2985 5524 6.176014 AGCTGTTTCAAACTAAGTACTCCT 57.824 37.500 1.10 0.00 0.00 3.69
2986 5525 5.408909 GGAGCTGTTTCAAACTAAGTACTCC 59.591 44.000 1.10 5.23 32.77 3.85
2987 5526 6.224584 AGGAGCTGTTTCAAACTAAGTACTC 58.775 40.000 1.10 0.11 0.00 2.59
2988 5527 6.176014 AGGAGCTGTTTCAAACTAAGTACT 57.824 37.500 1.10 0.00 0.00 2.73
2989 5528 6.862711 AAGGAGCTGTTTCAAACTAAGTAC 57.137 37.500 1.10 0.00 0.00 2.73
2995 5534 2.223572 CGCAAAGGAGCTGTTTCAAACT 60.224 45.455 1.10 0.00 0.00 2.66
3001 5540 2.543777 TAGACGCAAAGGAGCTGTTT 57.456 45.000 0.00 0.00 0.00 2.83
3015 5556 2.030717 AGTGAGTGCTCAGTGTTAGACG 60.031 50.000 8.58 0.00 41.37 4.18
3033 5574 0.385390 GCACTCCAAACCACCAAGTG 59.615 55.000 0.00 0.00 40.19 3.16
3038 5579 2.489938 TATCTGCACTCCAAACCACC 57.510 50.000 0.00 0.00 0.00 4.61
3168 5905 4.142004 GGACGGAGGAAGTATTACACACAT 60.142 45.833 0.00 0.00 0.00 3.21
3173 5910 3.972133 TCTGGACGGAGGAAGTATTACA 58.028 45.455 0.00 0.00 0.00 2.41
3174 5911 4.996788 TTCTGGACGGAGGAAGTATTAC 57.003 45.455 0.00 0.00 0.00 1.89
3175 5912 7.664552 TTATTTCTGGACGGAGGAAGTATTA 57.335 36.000 0.00 0.00 0.00 0.98
3176 5913 6.555463 TTATTTCTGGACGGAGGAAGTATT 57.445 37.500 0.00 0.00 0.00 1.89
3177 5914 6.555463 TTTATTTCTGGACGGAGGAAGTAT 57.445 37.500 0.00 0.00 0.00 2.12
3178 5915 6.155565 TCATTTATTTCTGGACGGAGGAAGTA 59.844 38.462 0.00 0.00 0.00 2.24
3179 5916 4.903045 TTTATTTCTGGACGGAGGAAGT 57.097 40.909 0.00 0.00 0.00 3.01
3180 5917 5.294552 GTCATTTATTTCTGGACGGAGGAAG 59.705 44.000 0.00 0.00 0.00 3.46
3181 5918 5.045869 AGTCATTTATTTCTGGACGGAGGAA 60.046 40.000 0.00 0.00 33.84 3.36
3182 5919 4.469945 AGTCATTTATTTCTGGACGGAGGA 59.530 41.667 0.00 0.00 33.84 3.71
3183 5920 4.770795 AGTCATTTATTTCTGGACGGAGG 58.229 43.478 0.00 0.00 33.84 4.30
3184 5921 5.419542 TGAGTCATTTATTTCTGGACGGAG 58.580 41.667 0.00 0.00 33.84 4.63
3185 5922 5.414789 TGAGTCATTTATTTCTGGACGGA 57.585 39.130 0.00 0.00 33.84 4.69
3186 5923 5.643777 ACTTGAGTCATTTATTTCTGGACGG 59.356 40.000 0.00 0.00 33.84 4.79
3187 5924 6.727824 ACTTGAGTCATTTATTTCTGGACG 57.272 37.500 0.00 0.00 33.84 4.79
3188 5925 8.352942 ACAAACTTGAGTCATTTATTTCTGGAC 58.647 33.333 0.00 0.00 0.00 4.02
3189 5926 8.463930 ACAAACTTGAGTCATTTATTTCTGGA 57.536 30.769 0.00 0.00 0.00 3.86
3190 5927 9.612620 GTACAAACTTGAGTCATTTATTTCTGG 57.387 33.333 0.00 0.00 0.00 3.86
3199 5936 8.129211 GCAAAGTTAGTACAAACTTGAGTCATT 58.871 33.333 2.97 0.00 46.40 2.57
3200 5937 7.282224 TGCAAAGTTAGTACAAACTTGAGTCAT 59.718 33.333 2.97 0.00 46.40 3.06
3201 5938 6.596106 TGCAAAGTTAGTACAAACTTGAGTCA 59.404 34.615 2.97 0.00 46.40 3.41
3202 5939 6.905609 GTGCAAAGTTAGTACAAACTTGAGTC 59.094 38.462 2.97 0.00 46.40 3.36
3203 5940 6.598064 AGTGCAAAGTTAGTACAAACTTGAGT 59.402 34.615 2.97 0.00 46.40 3.41
3204 5941 7.016361 AGTGCAAAGTTAGTACAAACTTGAG 57.984 36.000 2.97 1.53 46.40 3.02
3205 5942 6.995511 AGTGCAAAGTTAGTACAAACTTGA 57.004 33.333 2.97 0.00 46.40 3.02
3206 5943 9.006215 GTTTAGTGCAAAGTTAGTACAAACTTG 57.994 33.333 2.97 0.00 46.40 3.16
3208 5945 8.502105 AGTTTAGTGCAAAGTTAGTACAAACT 57.498 30.769 0.00 0.00 41.46 2.66
3240 5977 8.869109 TCATCCCAAAATAAGTGACTCAATTTT 58.131 29.630 10.89 10.89 33.07 1.82
3241 5978 8.421249 TCATCCCAAAATAAGTGACTCAATTT 57.579 30.769 0.00 0.00 0.00 1.82
3242 5979 8.421249 TTCATCCCAAAATAAGTGACTCAATT 57.579 30.769 0.00 0.00 0.00 2.32
3243 5980 7.123247 CCTTCATCCCAAAATAAGTGACTCAAT 59.877 37.037 0.00 0.00 0.00 2.57
3244 5981 6.434028 CCTTCATCCCAAAATAAGTGACTCAA 59.566 38.462 0.00 0.00 0.00 3.02
3245 5982 5.945784 CCTTCATCCCAAAATAAGTGACTCA 59.054 40.000 0.00 0.00 0.00 3.41
3246 5983 5.358160 CCCTTCATCCCAAAATAAGTGACTC 59.642 44.000 0.00 0.00 0.00 3.36
3247 5984 5.015178 TCCCTTCATCCCAAAATAAGTGACT 59.985 40.000 0.00 0.00 0.00 3.41
3248 5985 5.261216 TCCCTTCATCCCAAAATAAGTGAC 58.739 41.667 0.00 0.00 0.00 3.67
3249 5986 5.015178 ACTCCCTTCATCCCAAAATAAGTGA 59.985 40.000 0.00 0.00 0.00 3.41
3250 5987 5.264395 ACTCCCTTCATCCCAAAATAAGTG 58.736 41.667 0.00 0.00 0.00 3.16
3251 5988 5.536497 ACTCCCTTCATCCCAAAATAAGT 57.464 39.130 0.00 0.00 0.00 2.24
3252 5989 6.663734 ACTACTCCCTTCATCCCAAAATAAG 58.336 40.000 0.00 0.00 0.00 1.73
3253 5990 6.652205 ACTACTCCCTTCATCCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
3254 5991 6.674861 TGTACTACTCCCTTCATCCCAAAATA 59.325 38.462 0.00 0.00 0.00 1.40
3255 5992 5.491078 TGTACTACTCCCTTCATCCCAAAAT 59.509 40.000 0.00 0.00 0.00 1.82
3256 5993 4.847512 TGTACTACTCCCTTCATCCCAAAA 59.152 41.667 0.00 0.00 0.00 2.44
3257 5994 4.431378 TGTACTACTCCCTTCATCCCAAA 58.569 43.478 0.00 0.00 0.00 3.28
3258 5995 4.069312 TGTACTACTCCCTTCATCCCAA 57.931 45.455 0.00 0.00 0.00 4.12
3259 5996 3.769189 TGTACTACTCCCTTCATCCCA 57.231 47.619 0.00 0.00 0.00 4.37
3260 5997 5.145564 TGTATGTACTACTCCCTTCATCCC 58.854 45.833 0.00 0.00 0.00 3.85
3261 5998 5.834204 ACTGTATGTACTACTCCCTTCATCC 59.166 44.000 0.00 0.00 0.00 3.51
3262 5999 6.963083 ACTGTATGTACTACTCCCTTCATC 57.037 41.667 0.00 0.00 0.00 2.92
3263 6000 9.435570 AAATACTGTATGTACTACTCCCTTCAT 57.564 33.333 0.22 0.00 33.45 2.57
3264 6001 8.692710 CAAATACTGTATGTACTACTCCCTTCA 58.307 37.037 0.22 0.00 33.45 3.02
3265 6002 8.693625 ACAAATACTGTATGTACTACTCCCTTC 58.306 37.037 0.22 0.00 36.10 3.46
3266 6003 8.475639 CACAAATACTGTATGTACTACTCCCTT 58.524 37.037 0.22 0.00 36.10 3.95
3267 6004 7.618512 ACACAAATACTGTATGTACTACTCCCT 59.381 37.037 0.22 0.00 36.10 4.20
3268 6005 7.779073 ACACAAATACTGTATGTACTACTCCC 58.221 38.462 0.22 0.00 36.10 4.30
3354 6091 2.697751 TCATCACCACCAAAAACAAGGG 59.302 45.455 0.00 0.00 0.00 3.95
3531 6269 1.069432 TCTGCTTCACTACACGACGAC 60.069 52.381 0.00 0.00 0.00 4.34
3595 6624 4.383118 CGGGATCTCTGTAGTTTCAATGGT 60.383 45.833 0.00 0.00 0.00 3.55
3598 6627 5.420409 GTTCGGGATCTCTGTAGTTTCAAT 58.580 41.667 0.00 0.00 0.00 2.57
3648 6677 1.508088 CAAGCAAAGCGGATGACCC 59.492 57.895 0.00 0.00 0.00 4.46
3667 6699 1.549170 ACCCCTAGTTACGCAGAAGTG 59.451 52.381 0.00 0.00 0.00 3.16
3689 6721 9.602568 TTATGAAAATACGCTGTATTGGACTTA 57.397 29.630 12.51 8.27 0.00 2.24
3840 6872 3.198068 TCGAATGGAAATCTGCTGTAGC 58.802 45.455 0.00 0.00 42.50 3.58
3915 6947 3.496331 TTCAAAATGAACTGGGGAGACC 58.504 45.455 0.00 0.00 39.96 3.85
3923 6955 8.579863 ACCTTTTATCTCCTTCAAAATGAACTG 58.420 33.333 0.00 0.00 32.21 3.16
3924 6956 8.712228 ACCTTTTATCTCCTTCAAAATGAACT 57.288 30.769 0.00 0.00 32.21 3.01
3991 8620 3.585862 ACACAATCGAGCGTCAGTATTT 58.414 40.909 0.00 0.00 0.00 1.40
4025 8654 5.363939 TGCCATCATCGATGTATTGTAACA 58.636 37.500 24.09 14.04 38.28 2.41
4076 8706 4.209538 TGGTATCTCCAATTTGGCATCAG 58.790 43.478 10.76 3.21 44.12 2.90
4115 8745 8.739039 CAGAATCAAGGGTAACACATTTAATGA 58.261 33.333 12.28 0.00 39.74 2.57
4179 8854 0.743688 CACACGCTCTAGATCTGCCT 59.256 55.000 5.18 0.00 0.00 4.75
4183 8858 1.753649 ACATGCACACGCTCTAGATCT 59.246 47.619 0.00 0.00 39.64 2.75
4188 8863 0.670239 CACCACATGCACACGCTCTA 60.670 55.000 0.00 0.00 39.64 2.43
4282 8967 0.391130 ACCGCATGAACGTGCACTAT 60.391 50.000 16.19 2.72 45.30 2.12
4397 9082 9.865321 ATGCATGCAACCATCTTTATTATTATC 57.135 29.630 26.68 0.00 0.00 1.75
4403 9088 4.613944 CGATGCATGCAACCATCTTTATT 58.386 39.130 26.68 2.55 36.55 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.