Multiple sequence alignment - TraesCS4D01G169700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G169700 chr4D 100.000 2361 0 0 1 2361 294934677 294932317 0.000000e+00 4361.0
1 TraesCS4D01G169700 chr7A 94.798 1288 60 7 42 1325 429059635 429058351 0.000000e+00 2001.0
2 TraesCS4D01G169700 chr7A 79.805 1332 253 12 42 1363 419560923 419559598 0.000000e+00 955.0
3 TraesCS4D01G169700 chr4A 93.398 1348 82 6 42 1385 150815323 150813979 0.000000e+00 1989.0
4 TraesCS4D01G169700 chr4A 94.737 380 15 3 1549 1924 213037234 213037612 9.400000e-164 586.0
5 TraesCS4D01G169700 chr4A 100.000 28 0 0 1389 1416 213036872 213036899 4.000000e-03 52.8
6 TraesCS4D01G169700 chr5D 94.231 1300 71 4 42 1337 384794099 384795398 0.000000e+00 1982.0
7 TraesCS4D01G169700 chr5D 85.417 144 17 2 1925 2068 236457842 236457981 1.890000e-31 147.0
8 TraesCS4D01G169700 chr7D 90.282 1348 118 8 42 1385 274686978 274688316 0.000000e+00 1751.0
9 TraesCS4D01G169700 chr7B 90.236 932 82 8 125 1049 263119130 263118201 0.000000e+00 1208.0
10 TraesCS4D01G169700 chr3A 84.277 1113 158 13 57 1157 177816494 177815387 0.000000e+00 1070.0
11 TraesCS4D01G169700 chr1B 81.016 1338 233 18 42 1364 356448851 356450182 0.000000e+00 1044.0
12 TraesCS4D01G169700 chr5B 79.646 1356 252 24 42 1386 589232227 589233569 0.000000e+00 953.0
13 TraesCS4D01G169700 chr5B 100.000 29 0 0 1965 1993 655005553 655005581 1.000000e-03 54.7
14 TraesCS4D01G169700 chr3B 79.366 1357 256 23 42 1385 360011064 360009719 0.000000e+00 933.0
15 TraesCS4D01G169700 chr5A 78.722 1330 268 15 43 1363 583625171 583626494 0.000000e+00 874.0
16 TraesCS4D01G169700 chr2A 78.378 1332 270 18 43 1363 478905302 478906626 0.000000e+00 848.0
17 TraesCS4D01G169700 chr4B 93.506 385 14 5 1550 1924 364689209 364689592 1.580000e-156 562.0
18 TraesCS4D01G169700 chr4B 96.970 66 1 1 1384 1448 364685412 364685477 2.480000e-20 110.0
19 TraesCS4D01G169700 chr4B 88.406 69 8 0 1947 2015 557991694 557991626 1.500000e-12 84.2
20 TraesCS4D01G169700 chr3D 87.059 85 11 0 1925 2009 597735228 597735312 1.930000e-16 97.1
21 TraesCS4D01G169700 chr2D 79.137 139 27 2 1925 2062 489055204 489055067 6.950000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G169700 chr4D 294932317 294934677 2360 True 4361.0 4361 100.0000 1 2361 1 chr4D.!!$R1 2360
1 TraesCS4D01G169700 chr7A 429058351 429059635 1284 True 2001.0 2001 94.7980 42 1325 1 chr7A.!!$R2 1283
2 TraesCS4D01G169700 chr7A 419559598 419560923 1325 True 955.0 955 79.8050 42 1363 1 chr7A.!!$R1 1321
3 TraesCS4D01G169700 chr4A 150813979 150815323 1344 True 1989.0 1989 93.3980 42 1385 1 chr4A.!!$R1 1343
4 TraesCS4D01G169700 chr4A 213036872 213037612 740 False 319.4 586 97.3685 1389 1924 2 chr4A.!!$F1 535
5 TraesCS4D01G169700 chr5D 384794099 384795398 1299 False 1982.0 1982 94.2310 42 1337 1 chr5D.!!$F2 1295
6 TraesCS4D01G169700 chr7D 274686978 274688316 1338 False 1751.0 1751 90.2820 42 1385 1 chr7D.!!$F1 1343
7 TraesCS4D01G169700 chr7B 263118201 263119130 929 True 1208.0 1208 90.2360 125 1049 1 chr7B.!!$R1 924
8 TraesCS4D01G169700 chr3A 177815387 177816494 1107 True 1070.0 1070 84.2770 57 1157 1 chr3A.!!$R1 1100
9 TraesCS4D01G169700 chr1B 356448851 356450182 1331 False 1044.0 1044 81.0160 42 1364 1 chr1B.!!$F1 1322
10 TraesCS4D01G169700 chr5B 589232227 589233569 1342 False 953.0 953 79.6460 42 1386 1 chr5B.!!$F1 1344
11 TraesCS4D01G169700 chr3B 360009719 360011064 1345 True 933.0 933 79.3660 42 1385 1 chr3B.!!$R1 1343
12 TraesCS4D01G169700 chr5A 583625171 583626494 1323 False 874.0 874 78.7220 43 1363 1 chr5A.!!$F1 1320
13 TraesCS4D01G169700 chr2A 478905302 478906626 1324 False 848.0 848 78.3780 43 1363 1 chr2A.!!$F1 1320
14 TraesCS4D01G169700 chr4B 364685412 364689592 4180 False 336.0 562 95.2380 1384 1924 2 chr4B.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.030101 TCAAAGCGAAAACCTTGCCG 59.97 50.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1486 5169 0.103572 TATCTGGCGGTTTCGGTAGC 59.896 55.0 0.0 0.0 36.79 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.774439 TCTCAAAGCGAAAACCTTGC 57.226 45.000 0.00 0.00 0.00 4.01
23 24 1.336755 TCTCAAAGCGAAAACCTTGCC 59.663 47.619 0.00 0.00 0.00 4.52
24 25 0.030101 TCAAAGCGAAAACCTTGCCG 59.970 50.000 0.00 0.00 0.00 5.69
25 26 0.030101 CAAAGCGAAAACCTTGCCGA 59.970 50.000 0.00 0.00 0.00 5.54
26 27 0.741915 AAAGCGAAAACCTTGCCGAA 59.258 45.000 0.00 0.00 0.00 4.30
27 28 0.958822 AAGCGAAAACCTTGCCGAAT 59.041 45.000 0.00 0.00 0.00 3.34
28 29 1.816074 AGCGAAAACCTTGCCGAATA 58.184 45.000 0.00 0.00 0.00 1.75
29 30 2.365582 AGCGAAAACCTTGCCGAATAT 58.634 42.857 0.00 0.00 0.00 1.28
30 31 3.537580 AGCGAAAACCTTGCCGAATATA 58.462 40.909 0.00 0.00 0.00 0.86
31 32 3.942748 AGCGAAAACCTTGCCGAATATAA 59.057 39.130 0.00 0.00 0.00 0.98
32 33 4.396790 AGCGAAAACCTTGCCGAATATAAA 59.603 37.500 0.00 0.00 0.00 1.40
33 34 4.733405 GCGAAAACCTTGCCGAATATAAAG 59.267 41.667 0.00 0.00 0.00 1.85
34 35 5.270853 CGAAAACCTTGCCGAATATAAAGG 58.729 41.667 0.00 0.00 44.00 3.11
59 60 7.922811 GGCTTGGTTATTGATATTTGGAAAGAG 59.077 37.037 0.00 0.00 0.00 2.85
70 71 1.600058 TGGAAAGAGGCATGGATCCT 58.400 50.000 14.23 0.00 36.46 3.24
245 247 5.339778 CCCCTCTCCATGCATAATATGACAT 60.340 44.000 4.14 4.64 0.00 3.06
267 269 9.754382 GACATATTTCATTGCTTGGAATTACAT 57.246 29.630 0.00 0.00 35.11 2.29
487 495 6.093495 GTGCCACACTTGCTAATAGACATTTA 59.907 38.462 0.00 0.00 0.00 1.40
603 611 0.685131 CTGGGATTGCATGAGGCCAA 60.685 55.000 5.01 0.00 43.89 4.52
630 638 5.689383 AAAGCTTGTGTTATTGATCGTGT 57.311 34.783 0.00 0.00 0.00 4.49
891 907 1.775934 AAAGACCTCCCACGGGTTCC 61.776 60.000 1.07 0.00 37.17 3.62
1068 1092 4.708421 AGATTTGGCTTATCACTTGCACAT 59.292 37.500 0.00 0.00 0.00 3.21
1100 1124 7.660208 AGGATGTAATCGTCTTGTTGTTAACTT 59.340 33.333 7.22 0.00 46.86 2.66
1194 1219 6.558909 TGATGATTGTTATTTTATGCGTGCA 58.441 32.000 0.00 0.00 0.00 4.57
1215 1240 7.269511 CGTGCAATTTTCTGCGTATTAGTTTTA 59.730 33.333 0.00 0.00 45.74 1.52
1306 1332 8.822805 ACTAAAGATTGTTGTGAGGAACCTATA 58.177 33.333 0.00 0.00 0.00 1.31
1365 1391 7.555965 ACAGTTATTTCCAATGAATAAAGGCC 58.444 34.615 0.00 0.00 32.50 5.19
1366 1392 6.986231 CAGTTATTTCCAATGAATAAAGGCCC 59.014 38.462 0.00 0.00 32.50 5.80
1379 1405 8.463930 TGAATAAAGGCCCTGTTTATATTCAG 57.536 34.615 0.00 0.00 34.89 3.02
1385 1411 7.170393 AGGCCCTGTTTATATTCAGAAAAAC 57.830 36.000 0.00 2.99 34.02 2.43
1386 1412 6.954102 AGGCCCTGTTTATATTCAGAAAAACT 59.046 34.615 0.00 0.00 33.89 2.66
1387 1413 7.035612 GGCCCTGTTTATATTCAGAAAAACTG 58.964 38.462 9.38 8.69 46.97 3.16
1449 1475 5.034797 CGCTAATGACGACACTTATCTTCA 58.965 41.667 0.00 0.00 32.09 3.02
1451 1477 6.291322 CGCTAATGACGACACTTATCTTCAAG 60.291 42.308 0.00 0.00 31.40 3.02
1452 1478 5.786401 AATGACGACACTTATCTTCAAGC 57.214 39.130 0.00 0.00 31.40 4.01
1456 5139 5.862323 TGACGACACTTATCTTCAAGCTTAC 59.138 40.000 0.00 0.00 0.00 2.34
1481 5164 1.576421 GCTCTTCGTGTTTGGGCAG 59.424 57.895 0.00 0.00 0.00 4.85
1486 5169 1.002468 CTTCGTGTTTGGGCAGACAAG 60.002 52.381 0.00 0.00 0.00 3.16
1488 5171 1.447317 CGTGTTTGGGCAGACAAGCT 61.447 55.000 0.00 0.00 33.42 3.74
1498 5181 1.068474 CAGACAAGCTACCGAAACCG 58.932 55.000 0.00 0.00 0.00 4.44
1510 5193 1.287425 CGAAACCGCCAGATAGTTCC 58.713 55.000 0.00 0.00 0.00 3.62
1511 5194 1.404986 CGAAACCGCCAGATAGTTCCA 60.405 52.381 0.00 0.00 0.00 3.53
1512 5195 2.007608 GAAACCGCCAGATAGTTCCAC 58.992 52.381 0.00 0.00 0.00 4.02
1513 5196 0.108329 AACCGCCAGATAGTTCCACG 60.108 55.000 0.00 0.00 0.00 4.94
1514 5197 0.968901 ACCGCCAGATAGTTCCACGA 60.969 55.000 0.00 0.00 0.00 4.35
1515 5198 0.389391 CCGCCAGATAGTTCCACGAT 59.611 55.000 0.00 0.00 0.00 3.73
1516 5199 1.491670 CGCCAGATAGTTCCACGATG 58.508 55.000 0.00 0.00 0.00 3.84
1524 5207 2.851263 AGTTCCACGATGCTTTACCA 57.149 45.000 0.00 0.00 0.00 3.25
1527 5210 3.689649 AGTTCCACGATGCTTTACCAATC 59.310 43.478 0.00 0.00 0.00 2.67
1529 5212 3.531538 TCCACGATGCTTTACCAATCTC 58.468 45.455 0.00 0.00 0.00 2.75
1530 5213 3.197766 TCCACGATGCTTTACCAATCTCT 59.802 43.478 0.00 0.00 0.00 3.10
1532 5215 4.437239 CACGATGCTTTACCAATCTCTCT 58.563 43.478 0.00 0.00 0.00 3.10
1533 5216 4.505922 CACGATGCTTTACCAATCTCTCTC 59.494 45.833 0.00 0.00 0.00 3.20
1534 5217 4.404073 ACGATGCTTTACCAATCTCTCTCT 59.596 41.667 0.00 0.00 0.00 3.10
1536 5219 5.451103 CGATGCTTTACCAATCTCTCTCTCA 60.451 44.000 0.00 0.00 0.00 3.27
1537 5220 5.745312 TGCTTTACCAATCTCTCTCTCAA 57.255 39.130 0.00 0.00 0.00 3.02
1538 5221 5.482908 TGCTTTACCAATCTCTCTCTCAAC 58.517 41.667 0.00 0.00 0.00 3.18
1539 5222 4.873259 GCTTTACCAATCTCTCTCTCAACC 59.127 45.833 0.00 0.00 0.00 3.77
1541 5224 2.192263 ACCAATCTCTCTCTCAACCCC 58.808 52.381 0.00 0.00 0.00 4.95
1542 5225 2.191400 CCAATCTCTCTCTCAACCCCA 58.809 52.381 0.00 0.00 0.00 4.96
1546 5229 0.248843 CTCTCTCTCAACCCCACTGC 59.751 60.000 0.00 0.00 0.00 4.40
1547 5230 1.194781 TCTCTCTCAACCCCACTGCC 61.195 60.000 0.00 0.00 0.00 4.85
1589 5318 2.368548 AGGGATTTTTGCTTCGCCTTTT 59.631 40.909 0.00 0.00 0.00 2.27
1768 5500 3.444805 GAGGAGGCGAGCTCACGT 61.445 66.667 15.40 5.44 35.59 4.49
1850 5588 7.621832 TTTTGTTATTTTGAGCAACAGATCG 57.378 32.000 0.00 0.00 33.96 3.69
1863 5601 4.447724 GCAACAGATCGACAGACTTTACAA 59.552 41.667 0.00 0.00 0.00 2.41
1891 5629 2.483013 GGCGGGCTTCTTGTTTTTCTTT 60.483 45.455 0.00 0.00 0.00 2.52
1924 5663 2.507339 TTGCGGGCTTTTTCTTCTTG 57.493 45.000 0.00 0.00 0.00 3.02
1925 5664 1.686355 TGCGGGCTTTTTCTTCTTGA 58.314 45.000 0.00 0.00 0.00 3.02
1926 5665 1.608590 TGCGGGCTTTTTCTTCTTGAG 59.391 47.619 0.00 0.00 0.00 3.02
1927 5666 1.068264 GCGGGCTTTTTCTTCTTGAGG 60.068 52.381 0.00 0.00 0.00 3.86
1928 5667 2.230660 CGGGCTTTTTCTTCTTGAGGT 58.769 47.619 0.00 0.00 0.00 3.85
1929 5668 3.408634 CGGGCTTTTTCTTCTTGAGGTA 58.591 45.455 0.00 0.00 0.00 3.08
1930 5669 3.818773 CGGGCTTTTTCTTCTTGAGGTAA 59.181 43.478 0.00 0.00 0.00 2.85
1931 5670 4.459337 CGGGCTTTTTCTTCTTGAGGTAAT 59.541 41.667 0.00 0.00 0.00 1.89
1932 5671 5.646360 CGGGCTTTTTCTTCTTGAGGTAATA 59.354 40.000 0.00 0.00 0.00 0.98
1933 5672 6.318900 CGGGCTTTTTCTTCTTGAGGTAATAT 59.681 38.462 0.00 0.00 0.00 1.28
1934 5673 7.467403 CGGGCTTTTTCTTCTTGAGGTAATATC 60.467 40.741 0.00 0.00 0.00 1.63
1935 5674 7.339466 GGGCTTTTTCTTCTTGAGGTAATATCA 59.661 37.037 0.00 0.00 0.00 2.15
1936 5675 8.907885 GGCTTTTTCTTCTTGAGGTAATATCAT 58.092 33.333 0.00 0.00 0.00 2.45
1937 5676 9.943163 GCTTTTTCTTCTTGAGGTAATATCATC 57.057 33.333 0.00 0.00 0.00 2.92
1939 5678 9.667107 TTTTTCTTCTTGAGGTAATATCATCGT 57.333 29.630 0.00 0.00 0.00 3.73
1940 5679 8.648557 TTTCTTCTTGAGGTAATATCATCGTG 57.351 34.615 0.00 0.00 0.00 4.35
1941 5680 7.582667 TCTTCTTGAGGTAATATCATCGTGA 57.417 36.000 0.00 0.00 0.00 4.35
1942 5681 7.652727 TCTTCTTGAGGTAATATCATCGTGAG 58.347 38.462 0.00 0.00 0.00 3.51
1943 5682 6.961360 TCTTGAGGTAATATCATCGTGAGT 57.039 37.500 0.00 0.00 0.00 3.41
1944 5683 6.971602 TCTTGAGGTAATATCATCGTGAGTC 58.028 40.000 0.00 0.00 0.00 3.36
1945 5684 5.707242 TGAGGTAATATCATCGTGAGTCC 57.293 43.478 0.00 0.00 0.00 3.85
1946 5685 5.386060 TGAGGTAATATCATCGTGAGTCCT 58.614 41.667 0.00 0.00 0.00 3.85
1947 5686 6.540083 TGAGGTAATATCATCGTGAGTCCTA 58.460 40.000 0.00 0.00 0.00 2.94
1948 5687 6.655425 TGAGGTAATATCATCGTGAGTCCTAG 59.345 42.308 0.00 0.00 0.00 3.02
1949 5688 6.780901 AGGTAATATCATCGTGAGTCCTAGA 58.219 40.000 0.00 0.00 0.00 2.43
1950 5689 7.232188 AGGTAATATCATCGTGAGTCCTAGAA 58.768 38.462 0.00 0.00 0.00 2.10
1951 5690 7.175293 AGGTAATATCATCGTGAGTCCTAGAAC 59.825 40.741 0.00 0.00 0.00 3.01
1952 5691 7.175293 GGTAATATCATCGTGAGTCCTAGAACT 59.825 40.741 0.00 0.00 0.00 3.01
1953 5692 7.589958 AATATCATCGTGAGTCCTAGAACTT 57.410 36.000 0.00 0.00 0.00 2.66
1954 5693 4.703645 TCATCGTGAGTCCTAGAACTTG 57.296 45.455 0.00 0.00 0.00 3.16
1955 5694 3.119459 TCATCGTGAGTCCTAGAACTTGC 60.119 47.826 0.00 0.00 0.00 4.01
1956 5695 1.199327 TCGTGAGTCCTAGAACTTGCG 59.801 52.381 0.00 0.00 0.00 4.85
1957 5696 1.068472 CGTGAGTCCTAGAACTTGCGT 60.068 52.381 0.00 0.00 0.00 5.24
1958 5697 2.607282 CGTGAGTCCTAGAACTTGCGTT 60.607 50.000 0.00 0.00 35.68 4.84
1971 5710 6.669485 GAACTTGCGTTCGATGTTTAATTT 57.331 33.333 0.00 0.00 40.05 1.82
1972 5711 6.432802 AACTTGCGTTCGATGTTTAATTTG 57.567 33.333 0.00 0.00 0.00 2.32
1973 5712 4.915085 ACTTGCGTTCGATGTTTAATTTGG 59.085 37.500 0.00 0.00 0.00 3.28
1974 5713 4.491234 TGCGTTCGATGTTTAATTTGGT 57.509 36.364 0.00 0.00 0.00 3.67
1975 5714 4.222886 TGCGTTCGATGTTTAATTTGGTG 58.777 39.130 0.00 0.00 0.00 4.17
1976 5715 3.058913 GCGTTCGATGTTTAATTTGGTGC 59.941 43.478 0.00 0.00 0.00 5.01
1977 5716 4.472286 CGTTCGATGTTTAATTTGGTGCT 58.528 39.130 0.00 0.00 0.00 4.40
1978 5717 5.623335 CGTTCGATGTTTAATTTGGTGCTA 58.377 37.500 0.00 0.00 0.00 3.49
1979 5718 6.081049 CGTTCGATGTTTAATTTGGTGCTAA 58.919 36.000 0.00 0.00 0.00 3.09
1980 5719 6.579292 CGTTCGATGTTTAATTTGGTGCTAAA 59.421 34.615 0.00 0.00 0.00 1.85
1981 5720 7.113684 CGTTCGATGTTTAATTTGGTGCTAAAA 59.886 33.333 0.00 0.00 0.00 1.52
1982 5721 7.861176 TCGATGTTTAATTTGGTGCTAAAAC 57.139 32.000 0.00 0.00 0.00 2.43
1983 5722 7.653647 TCGATGTTTAATTTGGTGCTAAAACT 58.346 30.769 0.00 0.00 0.00 2.66
1984 5723 8.138712 TCGATGTTTAATTTGGTGCTAAAACTT 58.861 29.630 0.00 0.00 0.00 2.66
1985 5724 8.760569 CGATGTTTAATTTGGTGCTAAAACTTT 58.239 29.630 0.00 0.00 0.00 2.66
2024 5763 9.685276 TTATGATCATTCAACTTATGTTCTGGT 57.315 29.630 14.65 0.00 34.96 4.00
2025 5764 7.381766 TGATCATTCAACTTATGTTCTGGTG 57.618 36.000 0.00 0.00 33.52 4.17
2026 5765 5.627499 TCATTCAACTTATGTTCTGGTGC 57.373 39.130 0.00 0.00 33.52 5.01
2027 5766 5.069318 TCATTCAACTTATGTTCTGGTGCA 58.931 37.500 0.00 0.00 33.52 4.57
2028 5767 5.534278 TCATTCAACTTATGTTCTGGTGCAA 59.466 36.000 0.00 0.00 33.52 4.08
2029 5768 5.843673 TTCAACTTATGTTCTGGTGCAAA 57.156 34.783 0.00 0.00 33.52 3.68
2030 5769 6.403866 TTCAACTTATGTTCTGGTGCAAAT 57.596 33.333 0.00 0.00 33.52 2.32
2031 5770 7.517614 TTCAACTTATGTTCTGGTGCAAATA 57.482 32.000 0.00 0.00 33.52 1.40
2032 5771 6.908825 TCAACTTATGTTCTGGTGCAAATAC 58.091 36.000 0.00 0.00 33.52 1.89
2033 5772 6.488344 TCAACTTATGTTCTGGTGCAAATACA 59.512 34.615 0.00 0.00 33.52 2.29
2034 5773 6.254281 ACTTATGTTCTGGTGCAAATACAC 57.746 37.500 0.00 0.00 39.94 2.90
2035 5774 6.003950 ACTTATGTTCTGGTGCAAATACACT 58.996 36.000 0.00 0.00 40.52 3.55
2036 5775 6.149474 ACTTATGTTCTGGTGCAAATACACTC 59.851 38.462 0.00 0.00 40.52 3.51
2037 5776 3.814625 TGTTCTGGTGCAAATACACTCA 58.185 40.909 0.00 0.00 40.52 3.41
2038 5777 3.563808 TGTTCTGGTGCAAATACACTCAC 59.436 43.478 0.00 0.00 40.52 3.51
2039 5778 3.769739 TCTGGTGCAAATACACTCACT 57.230 42.857 0.00 0.00 40.52 3.41
2040 5779 4.085357 TCTGGTGCAAATACACTCACTT 57.915 40.909 0.00 0.00 40.52 3.16
2041 5780 4.065088 TCTGGTGCAAATACACTCACTTC 58.935 43.478 0.00 0.00 40.52 3.01
2042 5781 2.805671 TGGTGCAAATACACTCACTTCG 59.194 45.455 0.00 0.00 40.52 3.79
2043 5782 2.806244 GGTGCAAATACACTCACTTCGT 59.194 45.455 0.00 0.00 40.52 3.85
2044 5783 3.250040 GGTGCAAATACACTCACTTCGTT 59.750 43.478 0.00 0.00 40.52 3.85
2045 5784 4.455124 GTGCAAATACACTCACTTCGTTC 58.545 43.478 0.00 0.00 37.58 3.95
2046 5785 3.183574 TGCAAATACACTCACTTCGTTCG 59.816 43.478 0.00 0.00 0.00 3.95
2047 5786 3.183775 GCAAATACACTCACTTCGTTCGT 59.816 43.478 0.00 0.00 0.00 3.85
2048 5787 4.383649 GCAAATACACTCACTTCGTTCGTA 59.616 41.667 0.00 0.00 0.00 3.43
2049 5788 5.061808 GCAAATACACTCACTTCGTTCGTAT 59.938 40.000 0.00 0.00 0.00 3.06
2050 5789 6.252015 GCAAATACACTCACTTCGTTCGTATA 59.748 38.462 0.00 0.00 0.00 1.47
2051 5790 7.043590 GCAAATACACTCACTTCGTTCGTATAT 60.044 37.037 0.00 0.00 0.00 0.86
2052 5791 9.442033 CAAATACACTCACTTCGTTCGTATATA 57.558 33.333 0.00 0.00 0.00 0.86
2053 5792 9.661187 AAATACACTCACTTCGTTCGTATATAG 57.339 33.333 0.00 0.00 0.00 1.31
2054 5793 5.508872 ACACTCACTTCGTTCGTATATAGC 58.491 41.667 0.00 0.00 0.00 2.97
2055 5794 4.910456 CACTCACTTCGTTCGTATATAGCC 59.090 45.833 0.00 0.00 0.00 3.93
2056 5795 4.137849 TCACTTCGTTCGTATATAGCCG 57.862 45.455 0.00 0.00 0.00 5.52
2057 5796 3.561310 TCACTTCGTTCGTATATAGCCGT 59.439 43.478 0.00 0.00 0.00 5.68
2058 5797 4.749598 TCACTTCGTTCGTATATAGCCGTA 59.250 41.667 0.00 0.00 0.00 4.02
2059 5798 5.409520 TCACTTCGTTCGTATATAGCCGTAT 59.590 40.000 0.00 0.00 0.00 3.06
2060 5799 5.507180 CACTTCGTTCGTATATAGCCGTATG 59.493 44.000 0.00 0.00 0.00 2.39
2061 5800 4.604843 TCGTTCGTATATAGCCGTATGG 57.395 45.455 0.00 0.00 38.77 2.74
2071 5810 3.576356 CCGTATGGCCTGCTTGCG 61.576 66.667 3.32 1.60 0.00 4.85
2072 5811 2.819595 CGTATGGCCTGCTTGCGT 60.820 61.111 3.32 0.00 0.00 5.24
2073 5812 2.793946 GTATGGCCTGCTTGCGTG 59.206 61.111 3.32 0.00 0.00 5.34
2074 5813 2.438254 TATGGCCTGCTTGCGTGG 60.438 61.111 3.32 1.17 0.00 4.94
2078 5817 4.789075 GCCTGCTTGCGTGGCATG 62.789 66.667 19.15 1.31 45.46 4.06
2114 5853 3.324246 ACCTATCAGTGGGTGGGAG 57.676 57.895 5.98 0.00 37.87 4.30
2115 5854 0.417841 ACCTATCAGTGGGTGGGAGT 59.582 55.000 5.98 0.00 37.87 3.85
2116 5855 0.833287 CCTATCAGTGGGTGGGAGTG 59.167 60.000 0.00 0.00 0.00 3.51
2117 5856 0.179000 CTATCAGTGGGTGGGAGTGC 59.821 60.000 0.00 0.00 0.00 4.40
2118 5857 0.546507 TATCAGTGGGTGGGAGTGCA 60.547 55.000 0.00 0.00 0.00 4.57
2119 5858 1.210204 ATCAGTGGGTGGGAGTGCAT 61.210 55.000 0.00 0.00 0.00 3.96
2120 5859 0.546507 TCAGTGGGTGGGAGTGCATA 60.547 55.000 0.00 0.00 0.00 3.14
2121 5860 0.327924 CAGTGGGTGGGAGTGCATAA 59.672 55.000 0.00 0.00 0.00 1.90
2122 5861 0.620556 AGTGGGTGGGAGTGCATAAG 59.379 55.000 0.00 0.00 0.00 1.73
2123 5862 0.618458 GTGGGTGGGAGTGCATAAGA 59.382 55.000 0.00 0.00 0.00 2.10
2124 5863 0.618458 TGGGTGGGAGTGCATAAGAC 59.382 55.000 0.00 0.00 0.00 3.01
2125 5864 0.462047 GGGTGGGAGTGCATAAGACG 60.462 60.000 0.00 0.00 0.00 4.18
2126 5865 0.249398 GGTGGGAGTGCATAAGACGT 59.751 55.000 0.00 0.00 0.00 4.34
2127 5866 1.338769 GGTGGGAGTGCATAAGACGTT 60.339 52.381 0.00 0.00 0.00 3.99
2128 5867 1.732259 GTGGGAGTGCATAAGACGTTG 59.268 52.381 0.00 0.00 0.00 4.10
2129 5868 1.338674 TGGGAGTGCATAAGACGTTGG 60.339 52.381 0.00 0.00 0.00 3.77
2130 5869 1.369625 GGAGTGCATAAGACGTTGGG 58.630 55.000 0.00 0.00 0.00 4.12
2131 5870 1.338769 GGAGTGCATAAGACGTTGGGT 60.339 52.381 0.00 0.00 0.00 4.51
2132 5871 1.732259 GAGTGCATAAGACGTTGGGTG 59.268 52.381 0.00 0.00 0.00 4.61
2133 5872 1.346395 AGTGCATAAGACGTTGGGTGA 59.654 47.619 0.00 0.00 0.00 4.02
2134 5873 1.463444 GTGCATAAGACGTTGGGTGAC 59.537 52.381 0.00 0.00 0.00 3.67
2135 5874 1.070914 TGCATAAGACGTTGGGTGACA 59.929 47.619 0.00 0.00 0.00 3.58
2136 5875 1.463444 GCATAAGACGTTGGGTGACAC 59.537 52.381 0.00 0.00 0.00 3.67
2137 5876 2.870435 GCATAAGACGTTGGGTGACACT 60.870 50.000 5.39 0.00 0.00 3.55
2138 5877 3.615592 GCATAAGACGTTGGGTGACACTA 60.616 47.826 5.39 0.00 0.00 2.74
2139 5878 2.814280 AAGACGTTGGGTGACACTAG 57.186 50.000 5.39 0.00 0.00 2.57
2140 5879 0.317479 AGACGTTGGGTGACACTAGC 59.683 55.000 5.39 0.00 0.00 3.42
2141 5880 0.032952 GACGTTGGGTGACACTAGCA 59.967 55.000 5.39 0.00 0.00 3.49
2142 5881 0.249741 ACGTTGGGTGACACTAGCAC 60.250 55.000 5.39 0.00 35.56 4.40
2143 5882 0.249699 CGTTGGGTGACACTAGCACA 60.250 55.000 5.39 0.00 37.99 4.57
2144 5883 1.226746 GTTGGGTGACACTAGCACAC 58.773 55.000 5.39 0.00 40.05 3.82
2146 5885 4.261888 GGTGACACTAGCACACCG 57.738 61.111 14.65 0.00 43.21 4.94
2147 5886 1.366366 GGTGACACTAGCACACCGT 59.634 57.895 14.65 0.00 43.21 4.83
2148 5887 0.249741 GGTGACACTAGCACACCGTT 60.250 55.000 14.65 0.00 43.21 4.44
2149 5888 1.578583 GTGACACTAGCACACCGTTT 58.421 50.000 0.00 0.00 36.31 3.60
2150 5889 1.937899 GTGACACTAGCACACCGTTTT 59.062 47.619 0.00 0.00 36.31 2.43
2151 5890 2.353579 GTGACACTAGCACACCGTTTTT 59.646 45.455 0.00 0.00 36.31 1.94
2173 5912 7.575332 TTTTCTTTTCTTGAAAACTCCGTTG 57.425 32.000 4.61 0.00 38.15 4.10
2174 5913 5.890424 TCTTTTCTTGAAAACTCCGTTGT 57.110 34.783 4.61 0.00 0.00 3.32
2175 5914 5.636837 TCTTTTCTTGAAAACTCCGTTGTG 58.363 37.500 4.61 0.00 0.00 3.33
2176 5915 4.364415 TTTCTTGAAAACTCCGTTGTGG 57.636 40.909 0.00 0.00 40.09 4.17
2190 5929 6.854496 TCCGTTGTGGATATTTAACTATGC 57.146 37.500 0.00 0.00 43.74 3.14
2191 5930 6.588204 TCCGTTGTGGATATTTAACTATGCT 58.412 36.000 6.03 0.00 43.74 3.79
2192 5931 7.728148 TCCGTTGTGGATATTTAACTATGCTA 58.272 34.615 6.03 0.00 43.74 3.49
2193 5932 8.205512 TCCGTTGTGGATATTTAACTATGCTAA 58.794 33.333 6.03 0.38 43.74 3.09
2194 5933 8.832521 CCGTTGTGGATATTTAACTATGCTAAA 58.167 33.333 6.03 0.00 42.00 1.85
2225 5964 9.382275 CCTCAAATAAAATGAAAAATAGGTGGG 57.618 33.333 0.00 0.00 0.00 4.61
2226 5965 9.382275 CTCAAATAAAATGAAAAATAGGTGGGG 57.618 33.333 0.00 0.00 0.00 4.96
2227 5966 7.826744 TCAAATAAAATGAAAAATAGGTGGGGC 59.173 33.333 0.00 0.00 0.00 5.80
2228 5967 6.882768 ATAAAATGAAAAATAGGTGGGGCA 57.117 33.333 0.00 0.00 0.00 5.36
2229 5968 4.824479 AAATGAAAAATAGGTGGGGCAG 57.176 40.909 0.00 0.00 0.00 4.85
2230 5969 3.756082 ATGAAAAATAGGTGGGGCAGA 57.244 42.857 0.00 0.00 0.00 4.26
2231 5970 3.756082 TGAAAAATAGGTGGGGCAGAT 57.244 42.857 0.00 0.00 0.00 2.90
2232 5971 3.364549 TGAAAAATAGGTGGGGCAGATG 58.635 45.455 0.00 0.00 0.00 2.90
2233 5972 2.459555 AAAATAGGTGGGGCAGATGG 57.540 50.000 0.00 0.00 0.00 3.51
2234 5973 0.557729 AAATAGGTGGGGCAGATGGG 59.442 55.000 0.00 0.00 0.00 4.00
2235 5974 1.363530 AATAGGTGGGGCAGATGGGG 61.364 60.000 0.00 0.00 0.00 4.96
2236 5975 2.583898 ATAGGTGGGGCAGATGGGGT 62.584 60.000 0.00 0.00 0.00 4.95
2237 5976 4.129148 GGTGGGGCAGATGGGGTC 62.129 72.222 0.00 0.00 0.00 4.46
2238 5977 3.338250 GTGGGGCAGATGGGGTCA 61.338 66.667 0.00 0.00 0.00 4.02
2239 5978 2.534011 TGGGGCAGATGGGGTCAA 60.534 61.111 0.00 0.00 0.00 3.18
2240 5979 2.043953 GGGGCAGATGGGGTCAAC 60.044 66.667 0.00 0.00 0.00 3.18
2241 5980 2.043953 GGGCAGATGGGGTCAACC 60.044 66.667 0.00 0.00 39.11 3.77
2242 5981 2.763215 GGCAGATGGGGTCAACCA 59.237 61.111 0.89 0.00 46.24 3.67
2243 5982 1.379044 GGCAGATGGGGTCAACCAG 60.379 63.158 0.89 0.00 45.20 4.00
2244 5983 1.685224 GCAGATGGGGTCAACCAGA 59.315 57.895 0.89 0.00 45.20 3.86
2245 5984 0.038166 GCAGATGGGGTCAACCAGAA 59.962 55.000 0.89 0.00 45.20 3.02
2246 5985 1.952367 GCAGATGGGGTCAACCAGAAG 60.952 57.143 0.89 0.00 45.20 2.85
2247 5986 1.352352 CAGATGGGGTCAACCAGAAGT 59.648 52.381 0.89 0.00 45.20 3.01
2248 5987 2.065799 AGATGGGGTCAACCAGAAGTT 58.934 47.619 0.89 0.00 45.20 2.66
2249 5988 2.040412 AGATGGGGTCAACCAGAAGTTC 59.960 50.000 0.89 0.00 45.20 3.01
2250 5989 0.476771 TGGGGTCAACCAGAAGTTCC 59.523 55.000 0.00 0.00 42.91 3.62
2251 5990 0.771755 GGGGTCAACCAGAAGTTCCT 59.228 55.000 0.00 0.00 42.91 3.36
2252 5991 1.982958 GGGGTCAACCAGAAGTTCCTA 59.017 52.381 0.00 0.00 42.91 2.94
2253 5992 2.374170 GGGGTCAACCAGAAGTTCCTAA 59.626 50.000 0.00 0.00 42.91 2.69
2254 5993 3.409570 GGGTCAACCAGAAGTTCCTAAC 58.590 50.000 0.00 0.00 36.18 2.34
2255 5994 3.409570 GGTCAACCAGAAGTTCCTAACC 58.590 50.000 0.00 0.00 36.18 2.85
2256 5995 3.409570 GTCAACCAGAAGTTCCTAACCC 58.590 50.000 0.00 0.00 36.18 4.11
2257 5996 2.038033 TCAACCAGAAGTTCCTAACCCG 59.962 50.000 0.00 0.00 36.18 5.28
2258 5997 0.981943 ACCAGAAGTTCCTAACCCGG 59.018 55.000 0.00 0.00 0.00 5.73
2259 5998 0.252197 CCAGAAGTTCCTAACCCGGG 59.748 60.000 22.25 22.25 0.00 5.73
2260 5999 1.272807 CAGAAGTTCCTAACCCGGGA 58.727 55.000 32.02 4.01 0.00 5.14
2261 6000 1.207329 CAGAAGTTCCTAACCCGGGAG 59.793 57.143 32.02 15.86 34.06 4.30
2262 6001 0.107800 GAAGTTCCTAACCCGGGAGC 60.108 60.000 32.02 6.10 34.06 4.70
2263 6002 0.838987 AAGTTCCTAACCCGGGAGCA 60.839 55.000 32.02 10.62 36.69 4.26
2264 6003 0.620700 AGTTCCTAACCCGGGAGCAT 60.621 55.000 32.02 12.87 36.69 3.79
2265 6004 0.463833 GTTCCTAACCCGGGAGCATG 60.464 60.000 32.02 11.56 34.80 4.06
2266 6005 1.632018 TTCCTAACCCGGGAGCATGG 61.632 60.000 32.02 20.44 34.06 3.66
2267 6006 2.070039 CCTAACCCGGGAGCATGGA 61.070 63.158 32.02 2.35 0.00 3.41
2268 6007 1.418908 CCTAACCCGGGAGCATGGAT 61.419 60.000 32.02 0.00 0.00 3.41
2269 6008 1.348064 CTAACCCGGGAGCATGGATA 58.652 55.000 32.02 5.74 0.00 2.59
2270 6009 1.697432 CTAACCCGGGAGCATGGATAA 59.303 52.381 32.02 0.00 0.00 1.75
2271 6010 1.149101 AACCCGGGAGCATGGATAAT 58.851 50.000 32.02 0.00 0.00 1.28
2272 6011 1.149101 ACCCGGGAGCATGGATAATT 58.851 50.000 32.02 0.00 0.00 1.40
2273 6012 1.499007 ACCCGGGAGCATGGATAATTT 59.501 47.619 32.02 0.00 0.00 1.82
2274 6013 2.162681 CCCGGGAGCATGGATAATTTC 58.837 52.381 18.48 0.00 0.00 2.17
2275 6014 2.488891 CCCGGGAGCATGGATAATTTCA 60.489 50.000 18.48 0.00 0.00 2.69
2276 6015 3.221771 CCGGGAGCATGGATAATTTCAA 58.778 45.455 0.00 0.00 0.00 2.69
2277 6016 3.254166 CCGGGAGCATGGATAATTTCAAG 59.746 47.826 0.00 0.00 0.00 3.02
2278 6017 3.885297 CGGGAGCATGGATAATTTCAAGT 59.115 43.478 0.00 0.00 0.00 3.16
2279 6018 4.339247 CGGGAGCATGGATAATTTCAAGTT 59.661 41.667 0.00 0.00 0.00 2.66
2280 6019 5.506317 CGGGAGCATGGATAATTTCAAGTTC 60.506 44.000 0.00 0.00 0.00 3.01
2281 6020 5.221322 GGGAGCATGGATAATTTCAAGTTCC 60.221 44.000 0.00 0.00 0.00 3.62
2282 6021 5.595952 GGAGCATGGATAATTTCAAGTTCCT 59.404 40.000 0.00 0.00 0.00 3.36
2283 6022 6.772716 GGAGCATGGATAATTTCAAGTTCCTA 59.227 38.462 0.00 0.00 0.00 2.94
2284 6023 7.285401 GGAGCATGGATAATTTCAAGTTCCTAA 59.715 37.037 0.00 0.00 0.00 2.69
2285 6024 8.773033 AGCATGGATAATTTCAAGTTCCTAAT 57.227 30.769 0.00 0.00 0.00 1.73
2286 6025 8.854117 AGCATGGATAATTTCAAGTTCCTAATC 58.146 33.333 0.00 0.00 0.00 1.75
2287 6026 8.084684 GCATGGATAATTTCAAGTTCCTAATCC 58.915 37.037 0.00 0.00 0.00 3.01
2288 6027 7.801716 TGGATAATTTCAAGTTCCTAATCCG 57.198 36.000 0.00 0.00 34.41 4.18
2289 6028 6.770785 TGGATAATTTCAAGTTCCTAATCCGG 59.229 38.462 0.00 0.00 34.41 5.14
2290 6029 6.206829 GGATAATTTCAAGTTCCTAATCCGGG 59.793 42.308 0.00 0.00 0.00 5.73
2291 6030 2.413310 TTCAAGTTCCTAATCCGGGC 57.587 50.000 0.00 0.00 0.00 6.13
2292 6031 0.177141 TCAAGTTCCTAATCCGGGCG 59.823 55.000 0.00 0.00 0.00 6.13
2293 6032 1.153229 AAGTTCCTAATCCGGGCGC 60.153 57.895 0.00 0.00 0.00 6.53
2294 6033 1.906105 AAGTTCCTAATCCGGGCGCA 61.906 55.000 10.83 0.00 0.00 6.09
2295 6034 1.450669 GTTCCTAATCCGGGCGCAA 60.451 57.895 10.83 0.00 0.00 4.85
2296 6035 1.153249 TTCCTAATCCGGGCGCAAG 60.153 57.895 10.83 1.16 43.44 4.01
2297 6036 1.618876 TTCCTAATCCGGGCGCAAGA 61.619 55.000 10.83 2.05 43.02 3.02
2298 6037 1.153249 CCTAATCCGGGCGCAAGAA 60.153 57.895 10.83 0.00 43.02 2.52
2299 6038 0.535102 CCTAATCCGGGCGCAAGAAT 60.535 55.000 10.83 0.00 43.02 2.40
2300 6039 1.270625 CCTAATCCGGGCGCAAGAATA 60.271 52.381 10.83 0.00 43.02 1.75
2301 6040 2.489971 CTAATCCGGGCGCAAGAATAA 58.510 47.619 10.83 0.00 43.02 1.40
2302 6041 1.981256 AATCCGGGCGCAAGAATAAT 58.019 45.000 10.83 0.00 43.02 1.28
2303 6042 1.981256 ATCCGGGCGCAAGAATAATT 58.019 45.000 10.83 0.00 43.02 1.40
2304 6043 1.757682 TCCGGGCGCAAGAATAATTT 58.242 45.000 10.83 0.00 43.02 1.82
2305 6044 2.096248 TCCGGGCGCAAGAATAATTTT 58.904 42.857 10.83 0.00 43.02 1.82
2306 6045 2.159310 TCCGGGCGCAAGAATAATTTTG 60.159 45.455 10.83 0.00 43.02 2.44
2307 6046 1.587946 CGGGCGCAAGAATAATTTTGC 59.412 47.619 10.83 3.01 44.67 3.68
2330 6069 2.286365 AAAAAGGGCCGTCAGAATCA 57.714 45.000 0.00 0.00 0.00 2.57
2331 6070 2.286365 AAAAGGGCCGTCAGAATCAA 57.714 45.000 0.00 0.00 0.00 2.57
2332 6071 2.514458 AAAGGGCCGTCAGAATCAAT 57.486 45.000 0.00 0.00 0.00 2.57
2333 6072 2.044123 AAGGGCCGTCAGAATCAATC 57.956 50.000 0.00 0.00 0.00 2.67
2334 6073 1.207791 AGGGCCGTCAGAATCAATCT 58.792 50.000 0.00 0.00 39.68 2.40
2335 6074 1.139853 AGGGCCGTCAGAATCAATCTC 59.860 52.381 0.00 0.00 35.73 2.75
2336 6075 1.139853 GGGCCGTCAGAATCAATCTCT 59.860 52.381 0.00 0.00 35.73 3.10
2337 6076 2.478831 GGCCGTCAGAATCAATCTCTC 58.521 52.381 0.00 0.00 35.73 3.20
2338 6077 2.123342 GCCGTCAGAATCAATCTCTCG 58.877 52.381 0.00 0.00 35.73 4.04
2339 6078 2.223595 GCCGTCAGAATCAATCTCTCGA 60.224 50.000 0.00 0.00 35.73 4.04
2340 6079 3.551863 GCCGTCAGAATCAATCTCTCGAT 60.552 47.826 0.00 0.00 35.73 3.59
2341 6080 4.225984 CCGTCAGAATCAATCTCTCGATC 58.774 47.826 0.00 0.00 35.73 3.69
2342 6081 4.261363 CCGTCAGAATCAATCTCTCGATCA 60.261 45.833 0.00 0.00 35.73 2.92
2343 6082 4.674662 CGTCAGAATCAATCTCTCGATCAC 59.325 45.833 0.00 0.00 35.73 3.06
2344 6083 5.505489 CGTCAGAATCAATCTCTCGATCACT 60.505 44.000 0.00 0.00 35.73 3.41
2345 6084 6.293135 CGTCAGAATCAATCTCTCGATCACTA 60.293 42.308 0.00 0.00 35.73 2.74
2346 6085 7.077605 GTCAGAATCAATCTCTCGATCACTAG 58.922 42.308 0.00 0.00 35.73 2.57
2347 6086 5.858049 CAGAATCAATCTCTCGATCACTAGC 59.142 44.000 0.00 0.00 35.73 3.42
2348 6087 5.534278 AGAATCAATCTCTCGATCACTAGCA 59.466 40.000 0.00 0.00 30.46 3.49
2349 6088 5.781210 ATCAATCTCTCGATCACTAGCAA 57.219 39.130 0.00 0.00 0.00 3.91
2350 6089 5.180367 TCAATCTCTCGATCACTAGCAAG 57.820 43.478 0.00 0.00 0.00 4.01
2351 6090 4.037327 TCAATCTCTCGATCACTAGCAAGG 59.963 45.833 0.00 0.00 0.00 3.61
2352 6091 3.283259 TCTCTCGATCACTAGCAAGGA 57.717 47.619 0.00 0.00 0.00 3.36
2353 6092 3.621558 TCTCTCGATCACTAGCAAGGAA 58.378 45.455 0.00 0.00 0.00 3.36
2354 6093 3.629855 TCTCTCGATCACTAGCAAGGAAG 59.370 47.826 0.00 0.00 0.00 3.46
2355 6094 2.099921 TCTCGATCACTAGCAAGGAAGC 59.900 50.000 0.00 0.00 0.00 3.86
2356 6095 1.202302 TCGATCACTAGCAAGGAAGCG 60.202 52.381 0.00 0.00 40.15 4.68
2357 6096 0.933796 GATCACTAGCAAGGAAGCGC 59.066 55.000 0.00 0.00 40.15 5.92
2358 6097 0.250234 ATCACTAGCAAGGAAGCGCA 59.750 50.000 11.47 0.00 40.15 6.09
2359 6098 0.670546 TCACTAGCAAGGAAGCGCAC 60.671 55.000 11.47 2.54 40.15 5.34
2360 6099 1.738099 ACTAGCAAGGAAGCGCACG 60.738 57.895 11.47 0.00 40.15 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.670523 GCAAGGTTTTCGCTTTGAGATTC 59.329 43.478 0.00 0.00 0.00 2.52
2 3 2.029918 GGCAAGGTTTTCGCTTTGAGAT 60.030 45.455 0.00 0.00 0.00 2.75
4 5 1.770957 GGCAAGGTTTTCGCTTTGAG 58.229 50.000 0.00 0.00 0.00 3.02
5 6 0.030101 CGGCAAGGTTTTCGCTTTGA 59.970 50.000 0.00 0.00 0.00 2.69
6 7 0.030101 TCGGCAAGGTTTTCGCTTTG 59.970 50.000 0.00 0.00 0.00 2.77
7 8 0.741915 TTCGGCAAGGTTTTCGCTTT 59.258 45.000 0.00 0.00 0.00 3.51
8 9 0.958822 ATTCGGCAAGGTTTTCGCTT 59.041 45.000 0.00 0.00 0.00 4.68
9 10 1.816074 TATTCGGCAAGGTTTTCGCT 58.184 45.000 0.00 0.00 0.00 4.93
10 11 2.844122 ATATTCGGCAAGGTTTTCGC 57.156 45.000 0.00 0.00 0.00 4.70
11 12 5.270853 CCTTTATATTCGGCAAGGTTTTCG 58.729 41.667 0.00 0.00 32.49 3.46
12 13 5.041287 GCCTTTATATTCGGCAAGGTTTTC 58.959 41.667 0.00 0.00 43.25 2.29
13 14 4.709886 AGCCTTTATATTCGGCAAGGTTTT 59.290 37.500 10.89 0.00 46.14 2.43
14 15 4.278310 AGCCTTTATATTCGGCAAGGTTT 58.722 39.130 10.89 0.00 46.14 3.27
15 16 3.898482 AGCCTTTATATTCGGCAAGGTT 58.102 40.909 10.89 0.00 46.14 3.50
16 17 3.577805 AGCCTTTATATTCGGCAAGGT 57.422 42.857 10.89 0.00 46.14 3.50
17 18 3.004734 CCAAGCCTTTATATTCGGCAAGG 59.995 47.826 10.89 8.35 46.14 3.61
18 19 3.632145 ACCAAGCCTTTATATTCGGCAAG 59.368 43.478 10.89 4.34 46.14 4.01
19 20 3.626930 ACCAAGCCTTTATATTCGGCAA 58.373 40.909 10.89 0.00 46.14 4.52
20 21 3.290948 ACCAAGCCTTTATATTCGGCA 57.709 42.857 10.89 0.00 46.14 5.69
21 22 5.959618 ATAACCAAGCCTTTATATTCGGC 57.040 39.130 0.00 0.00 44.09 5.54
22 23 7.504924 TCAATAACCAAGCCTTTATATTCGG 57.495 36.000 0.00 0.00 0.00 4.30
28 29 9.432982 TCCAAATATCAATAACCAAGCCTTTAT 57.567 29.630 0.00 0.00 0.00 1.40
29 30 8.830915 TCCAAATATCAATAACCAAGCCTTTA 57.169 30.769 0.00 0.00 0.00 1.85
30 31 7.732222 TCCAAATATCAATAACCAAGCCTTT 57.268 32.000 0.00 0.00 0.00 3.11
31 32 7.732222 TTCCAAATATCAATAACCAAGCCTT 57.268 32.000 0.00 0.00 0.00 4.35
32 33 7.619302 TCTTTCCAAATATCAATAACCAAGCCT 59.381 33.333 0.00 0.00 0.00 4.58
33 34 7.781056 TCTTTCCAAATATCAATAACCAAGCC 58.219 34.615 0.00 0.00 0.00 4.35
34 35 7.922811 CCTCTTTCCAAATATCAATAACCAAGC 59.077 37.037 0.00 0.00 0.00 4.01
35 36 7.922811 GCCTCTTTCCAAATATCAATAACCAAG 59.077 37.037 0.00 0.00 0.00 3.61
36 37 7.398618 TGCCTCTTTCCAAATATCAATAACCAA 59.601 33.333 0.00 0.00 0.00 3.67
37 38 6.894654 TGCCTCTTTCCAAATATCAATAACCA 59.105 34.615 0.00 0.00 0.00 3.67
38 39 7.346751 TGCCTCTTTCCAAATATCAATAACC 57.653 36.000 0.00 0.00 0.00 2.85
39 40 7.869429 CCATGCCTCTTTCCAAATATCAATAAC 59.131 37.037 0.00 0.00 0.00 1.89
40 41 7.784073 TCCATGCCTCTTTCCAAATATCAATAA 59.216 33.333 0.00 0.00 0.00 1.40
59 60 1.678101 GCACAGTTTAGGATCCATGCC 59.322 52.381 15.82 0.00 0.00 4.40
106 107 4.373156 ACTTTTGATAGCAGGTGTCCTT 57.627 40.909 0.00 0.00 0.00 3.36
267 269 3.822940 ACCGTGAAACACCCATTCTTTA 58.177 40.909 0.00 0.00 35.74 1.85
487 495 3.575805 TGGGCAGATGGAAGAAACTTTT 58.424 40.909 0.00 0.00 0.00 2.27
603 611 8.604035 CACGATCAATAACACAAGCTTTACTAT 58.396 33.333 0.00 0.00 0.00 2.12
630 638 0.979665 CTCAAGAACTGCCTCTCCCA 59.020 55.000 0.00 0.00 0.00 4.37
891 907 3.100817 GGCATCGACATTCAATTTCACG 58.899 45.455 0.00 0.00 0.00 4.35
957 973 7.693969 AATAAACCTTCCTTTGTCATCTCTG 57.306 36.000 0.00 0.00 0.00 3.35
996 1016 3.159213 TCTGCACAACAATCCATCCTT 57.841 42.857 0.00 0.00 0.00 3.36
1042 1063 6.208402 TGTGCAAGTGATAAGCCAAATCTTAA 59.792 34.615 0.00 0.00 32.86 1.85
1068 1092 2.958818 AGACGATTACATCCTGCCCTA 58.041 47.619 0.00 0.00 0.00 3.53
1100 1124 9.863845 TTGTGTCAACTACTTTCATATTATCGA 57.136 29.630 0.00 0.00 0.00 3.59
1194 1219 9.855021 ATGCTTAAAACTAATACGCAGAAAATT 57.145 25.926 0.00 0.00 32.08 1.82
1215 1240 9.807649 CTTTATTTGCTTCCTATTACAATGCTT 57.192 29.630 0.00 0.00 0.00 3.91
1293 1319 9.832445 TTACAATCTCATTTATAGGTTCCTCAC 57.168 33.333 0.00 0.00 0.00 3.51
1342 1368 6.902974 AGGGCCTTTATTCATTGGAAATAACT 59.097 34.615 0.00 0.00 36.43 2.24
1379 1405 3.427863 CGAGGTACCGTTCTCAGTTTTTC 59.572 47.826 6.18 0.00 0.00 2.29
1385 1411 2.864968 CTTTCGAGGTACCGTTCTCAG 58.135 52.381 6.18 0.00 0.00 3.35
1386 1412 1.068055 GCTTTCGAGGTACCGTTCTCA 60.068 52.381 6.18 0.00 0.00 3.27
1387 1413 1.068055 TGCTTTCGAGGTACCGTTCTC 60.068 52.381 6.18 0.00 0.00 2.87
1452 1478 1.519455 CGAAGAGCCCAGCGGTAAG 60.519 63.158 0.00 0.00 0.00 2.34
1456 5139 3.883744 AACACGAAGAGCCCAGCGG 62.884 63.158 0.00 0.00 0.00 5.52
1467 5150 1.021202 CTTGTCTGCCCAAACACGAA 58.979 50.000 0.00 0.00 0.00 3.85
1481 5164 1.632948 GGCGGTTTCGGTAGCTTGTC 61.633 60.000 0.00 0.00 36.79 3.18
1486 5169 0.103572 TATCTGGCGGTTTCGGTAGC 59.896 55.000 0.00 0.00 36.79 3.58
1488 5171 1.477553 ACTATCTGGCGGTTTCGGTA 58.522 50.000 0.00 0.00 36.79 4.02
1498 5181 1.202580 AGCATCGTGGAACTATCTGGC 60.203 52.381 0.00 0.00 31.75 4.85
1510 5193 4.437239 AGAGAGATTGGTAAAGCATCGTG 58.563 43.478 0.00 0.00 0.00 4.35
1511 5194 4.404073 AGAGAGAGATTGGTAAAGCATCGT 59.596 41.667 0.00 0.00 0.00 3.73
1512 5195 4.942852 AGAGAGAGATTGGTAAAGCATCG 58.057 43.478 0.00 0.00 0.00 3.84
1513 5196 5.911752 TGAGAGAGAGATTGGTAAAGCATC 58.088 41.667 0.00 0.00 0.00 3.91
1514 5197 5.946942 TGAGAGAGAGATTGGTAAAGCAT 57.053 39.130 0.00 0.00 0.00 3.79
1515 5198 5.482908 GTTGAGAGAGAGATTGGTAAAGCA 58.517 41.667 0.00 0.00 0.00 3.91
1516 5199 4.873259 GGTTGAGAGAGAGATTGGTAAAGC 59.127 45.833 0.00 0.00 0.00 3.51
1524 5207 2.836981 CAGTGGGGTTGAGAGAGAGATT 59.163 50.000 0.00 0.00 0.00 2.40
1527 5210 0.248843 GCAGTGGGGTTGAGAGAGAG 59.751 60.000 0.00 0.00 0.00 3.20
1529 5212 1.298014 GGCAGTGGGGTTGAGAGAG 59.702 63.158 0.00 0.00 0.00 3.20
1530 5213 1.059584 TTGGCAGTGGGGTTGAGAGA 61.060 55.000 0.00 0.00 0.00 3.10
1532 5215 0.260230 TTTTGGCAGTGGGGTTGAGA 59.740 50.000 0.00 0.00 0.00 3.27
1533 5216 0.675633 CTTTTGGCAGTGGGGTTGAG 59.324 55.000 0.00 0.00 0.00 3.02
1534 5217 1.398958 GCTTTTGGCAGTGGGGTTGA 61.399 55.000 0.00 0.00 41.35 3.18
1536 5219 1.075301 AGCTTTTGGCAGTGGGGTT 60.075 52.632 0.00 0.00 44.79 4.11
1537 5220 1.833934 CAGCTTTTGGCAGTGGGGT 60.834 57.895 0.00 0.00 44.79 4.95
1538 5221 3.053828 CAGCTTTTGGCAGTGGGG 58.946 61.111 0.00 0.00 44.79 4.96
1539 5222 1.751349 AAGCAGCTTTTGGCAGTGGG 61.751 55.000 0.21 0.00 44.79 4.61
1541 5224 1.944032 AAAAGCAGCTTTTGGCAGTG 58.056 45.000 28.69 0.00 41.38 3.66
1542 5225 4.341366 AATAAAAGCAGCTTTTGGCAGT 57.659 36.364 34.17 17.13 42.61 4.40
1546 5229 5.421212 TGCAAAATAAAAGCAGCTTTTGG 57.579 34.783 34.17 21.35 42.61 3.28
1589 5318 1.671328 CTCGTCGTGCTCCTATCAAGA 59.329 52.381 0.00 0.00 0.00 3.02
1681 5413 2.476821 ACTACCGTCCAAGTCAAAACG 58.523 47.619 0.00 0.00 35.01 3.60
1682 5414 4.370917 TGTACTACCGTCCAAGTCAAAAC 58.629 43.478 0.00 0.00 0.00 2.43
1768 5500 3.009363 TGCTTGATGTCCCAGAATCTCAA 59.991 43.478 0.00 0.00 0.00 3.02
1863 5601 1.152546 AAGAAGCCCGCCCAAACTT 60.153 52.632 0.00 0.00 0.00 2.66
1917 5656 7.285629 ACTCACGATGATATTACCTCAAGAAGA 59.714 37.037 0.00 0.00 0.00 2.87
1924 5663 5.968528 AGGACTCACGATGATATTACCTC 57.031 43.478 0.00 0.00 0.00 3.85
1925 5664 6.780901 TCTAGGACTCACGATGATATTACCT 58.219 40.000 0.00 0.00 0.00 3.08
1926 5665 7.175293 AGTTCTAGGACTCACGATGATATTACC 59.825 40.741 0.00 0.00 0.00 2.85
1927 5666 8.101654 AGTTCTAGGACTCACGATGATATTAC 57.898 38.462 0.00 0.00 0.00 1.89
1928 5667 8.568794 CAAGTTCTAGGACTCACGATGATATTA 58.431 37.037 3.51 0.00 0.00 0.98
1929 5668 7.429633 CAAGTTCTAGGACTCACGATGATATT 58.570 38.462 3.51 0.00 0.00 1.28
1930 5669 6.515862 GCAAGTTCTAGGACTCACGATGATAT 60.516 42.308 3.51 0.00 0.00 1.63
1931 5670 5.221067 GCAAGTTCTAGGACTCACGATGATA 60.221 44.000 3.51 0.00 0.00 2.15
1932 5671 4.440802 GCAAGTTCTAGGACTCACGATGAT 60.441 45.833 3.51 0.00 0.00 2.45
1933 5672 3.119459 GCAAGTTCTAGGACTCACGATGA 60.119 47.826 3.51 0.00 0.00 2.92
1934 5673 3.182967 GCAAGTTCTAGGACTCACGATG 58.817 50.000 3.51 0.00 0.00 3.84
1935 5674 2.159366 CGCAAGTTCTAGGACTCACGAT 60.159 50.000 16.97 0.00 32.70 3.73
1936 5675 1.199327 CGCAAGTTCTAGGACTCACGA 59.801 52.381 16.97 0.00 32.70 4.35
1937 5676 1.618861 CGCAAGTTCTAGGACTCACG 58.381 55.000 3.51 7.74 0.00 4.35
1952 5691 4.677378 CACCAAATTAAACATCGAACGCAA 59.323 37.500 0.00 0.00 0.00 4.85
1953 5692 4.222886 CACCAAATTAAACATCGAACGCA 58.777 39.130 0.00 0.00 0.00 5.24
1954 5693 3.058913 GCACCAAATTAAACATCGAACGC 59.941 43.478 0.00 0.00 0.00 4.84
1955 5694 4.472286 AGCACCAAATTAAACATCGAACG 58.528 39.130 0.00 0.00 0.00 3.95
1956 5695 7.861176 TTTAGCACCAAATTAAACATCGAAC 57.139 32.000 0.00 0.00 0.00 3.95
1957 5696 8.138712 AGTTTTAGCACCAAATTAAACATCGAA 58.861 29.630 0.00 0.00 0.00 3.71
1958 5697 7.653647 AGTTTTAGCACCAAATTAAACATCGA 58.346 30.769 0.00 0.00 0.00 3.59
1959 5698 7.867445 AGTTTTAGCACCAAATTAAACATCG 57.133 32.000 0.00 0.00 0.00 3.84
1998 5737 9.685276 ACCAGAACATAAGTTGAATGATCATAA 57.315 29.630 9.04 0.00 38.30 1.90
1999 5738 9.112725 CACCAGAACATAAGTTGAATGATCATA 57.887 33.333 9.04 0.00 38.30 2.15
2000 5739 7.415989 GCACCAGAACATAAGTTGAATGATCAT 60.416 37.037 1.18 1.18 38.30 2.45
2001 5740 6.127925 GCACCAGAACATAAGTTGAATGATCA 60.128 38.462 0.00 0.00 38.30 2.92
2002 5741 6.127925 TGCACCAGAACATAAGTTGAATGATC 60.128 38.462 0.00 0.00 38.30 2.92
2003 5742 5.711506 TGCACCAGAACATAAGTTGAATGAT 59.288 36.000 0.00 0.00 38.30 2.45
2004 5743 5.069318 TGCACCAGAACATAAGTTGAATGA 58.931 37.500 0.00 0.00 38.30 2.57
2005 5744 5.375417 TGCACCAGAACATAAGTTGAATG 57.625 39.130 0.00 0.00 38.30 2.67
2006 5745 6.403866 TTTGCACCAGAACATAAGTTGAAT 57.596 33.333 0.00 0.00 38.30 2.57
2007 5746 5.843673 TTTGCACCAGAACATAAGTTGAA 57.156 34.783 0.00 0.00 38.30 2.69
2008 5747 6.488344 TGTATTTGCACCAGAACATAAGTTGA 59.512 34.615 0.00 0.00 38.30 3.18
2009 5748 6.582295 GTGTATTTGCACCAGAACATAAGTTG 59.418 38.462 0.00 0.00 34.18 3.16
2010 5749 6.490040 AGTGTATTTGCACCAGAACATAAGTT 59.510 34.615 0.00 0.00 40.04 2.66
2011 5750 6.003950 AGTGTATTTGCACCAGAACATAAGT 58.996 36.000 0.00 0.00 40.04 2.24
2012 5751 6.149308 TGAGTGTATTTGCACCAGAACATAAG 59.851 38.462 0.00 0.00 40.04 1.73
2013 5752 6.000840 TGAGTGTATTTGCACCAGAACATAA 58.999 36.000 0.00 0.00 40.04 1.90
2014 5753 5.411361 GTGAGTGTATTTGCACCAGAACATA 59.589 40.000 0.00 0.00 40.04 2.29
2015 5754 4.216257 GTGAGTGTATTTGCACCAGAACAT 59.784 41.667 0.00 0.00 40.04 2.71
2016 5755 3.563808 GTGAGTGTATTTGCACCAGAACA 59.436 43.478 0.00 0.00 40.04 3.18
2017 5756 3.815401 AGTGAGTGTATTTGCACCAGAAC 59.185 43.478 0.00 0.00 40.04 3.01
2018 5757 4.085357 AGTGAGTGTATTTGCACCAGAA 57.915 40.909 0.00 0.00 40.04 3.02
2019 5758 3.769739 AGTGAGTGTATTTGCACCAGA 57.230 42.857 0.00 0.00 40.04 3.86
2020 5759 3.120546 CGAAGTGAGTGTATTTGCACCAG 60.121 47.826 0.00 0.00 40.04 4.00
2021 5760 2.805671 CGAAGTGAGTGTATTTGCACCA 59.194 45.455 0.00 0.00 40.04 4.17
2022 5761 2.806244 ACGAAGTGAGTGTATTTGCACC 59.194 45.455 0.00 0.00 42.51 5.01
2023 5762 4.455124 GAACGAAGTGAGTGTATTTGCAC 58.545 43.478 0.00 0.00 45.00 4.57
2024 5763 3.183574 CGAACGAAGTGAGTGTATTTGCA 59.816 43.478 0.00 0.00 45.00 4.08
2025 5764 3.183775 ACGAACGAAGTGAGTGTATTTGC 59.816 43.478 0.14 0.00 45.00 3.68
2026 5765 4.966850 ACGAACGAAGTGAGTGTATTTG 57.033 40.909 0.14 0.00 45.00 2.32
2027 5766 9.661187 CTATATACGAACGAAGTGAGTGTATTT 57.339 33.333 0.14 0.00 45.00 1.40
2028 5767 7.802251 GCTATATACGAACGAAGTGAGTGTATT 59.198 37.037 0.14 0.00 45.00 1.89
2029 5768 7.296660 GCTATATACGAACGAAGTGAGTGTAT 58.703 38.462 0.14 0.00 45.00 2.29
2030 5769 6.293081 GGCTATATACGAACGAAGTGAGTGTA 60.293 42.308 0.14 0.00 45.00 2.90
2031 5770 5.505324 GGCTATATACGAACGAAGTGAGTGT 60.505 44.000 0.14 0.00 45.00 3.55
2032 5771 4.910456 GGCTATATACGAACGAAGTGAGTG 59.090 45.833 0.14 0.00 45.00 3.51
2033 5772 4.319333 CGGCTATATACGAACGAAGTGAGT 60.319 45.833 0.14 0.00 45.00 3.41
2034 5773 4.149617 CGGCTATATACGAACGAAGTGAG 58.850 47.826 0.14 0.00 45.00 3.51
2035 5774 3.561310 ACGGCTATATACGAACGAAGTGA 59.439 43.478 0.14 0.00 45.00 3.41
2036 5775 3.881795 ACGGCTATATACGAACGAAGTG 58.118 45.455 0.14 0.00 45.00 3.16
2038 5777 5.026462 CCATACGGCTATATACGAACGAAG 58.974 45.833 0.14 0.00 0.00 3.79
2039 5778 4.973396 CCATACGGCTATATACGAACGAA 58.027 43.478 0.14 0.00 0.00 3.85
2040 5779 4.604843 CCATACGGCTATATACGAACGA 57.395 45.455 0.14 0.00 0.00 3.85
2054 5793 3.576356 CGCAAGCAGGCCATACGG 61.576 66.667 5.01 0.00 0.00 4.02
2055 5794 2.819595 ACGCAAGCAGGCCATACG 60.820 61.111 5.01 1.91 45.62 3.06
2056 5795 2.764314 CCACGCAAGCAGGCCATAC 61.764 63.158 5.01 0.00 45.62 2.39
2057 5796 2.438254 CCACGCAAGCAGGCCATA 60.438 61.111 5.01 0.00 45.62 2.74
2066 5805 4.789075 GCTGGCATGCCACGCAAG 62.789 66.667 35.93 27.86 43.62 4.01
2074 5813 3.145551 CTCCCAAGGCTGGCATGC 61.146 66.667 9.90 9.90 41.99 4.06
2075 5814 1.751927 GTCTCCCAAGGCTGGCATG 60.752 63.158 3.38 0.97 41.99 4.06
2076 5815 2.679716 GTCTCCCAAGGCTGGCAT 59.320 61.111 3.38 0.00 41.99 4.40
2077 5816 3.650950 GGTCTCCCAAGGCTGGCA 61.651 66.667 3.38 0.00 41.99 4.92
2078 5817 4.432741 GGGTCTCCCAAGGCTGGC 62.433 72.222 0.00 0.00 44.65 4.85
2087 5826 1.123928 CACTGATAGGTGGGTCTCCC 58.876 60.000 0.00 0.00 45.71 4.30
2096 5835 0.417841 ACTCCCACCCACTGATAGGT 59.582 55.000 0.00 0.00 36.58 3.08
2097 5836 0.833287 CACTCCCACCCACTGATAGG 59.167 60.000 0.00 0.00 0.00 2.57
2098 5837 0.179000 GCACTCCCACCCACTGATAG 59.821 60.000 0.00 0.00 0.00 2.08
2099 5838 0.546507 TGCACTCCCACCCACTGATA 60.547 55.000 0.00 0.00 0.00 2.15
2100 5839 1.210204 ATGCACTCCCACCCACTGAT 61.210 55.000 0.00 0.00 0.00 2.90
2101 5840 0.546507 TATGCACTCCCACCCACTGA 60.547 55.000 0.00 0.00 0.00 3.41
2102 5841 0.327924 TTATGCACTCCCACCCACTG 59.672 55.000 0.00 0.00 0.00 3.66
2103 5842 0.620556 CTTATGCACTCCCACCCACT 59.379 55.000 0.00 0.00 0.00 4.00
2104 5843 0.618458 TCTTATGCACTCCCACCCAC 59.382 55.000 0.00 0.00 0.00 4.61
2105 5844 0.618458 GTCTTATGCACTCCCACCCA 59.382 55.000 0.00 0.00 0.00 4.51
2106 5845 0.462047 CGTCTTATGCACTCCCACCC 60.462 60.000 0.00 0.00 0.00 4.61
2107 5846 0.249398 ACGTCTTATGCACTCCCACC 59.751 55.000 0.00 0.00 0.00 4.61
2108 5847 1.732259 CAACGTCTTATGCACTCCCAC 59.268 52.381 0.00 0.00 0.00 4.61
2109 5848 1.338674 CCAACGTCTTATGCACTCCCA 60.339 52.381 0.00 0.00 0.00 4.37
2110 5849 1.369625 CCAACGTCTTATGCACTCCC 58.630 55.000 0.00 0.00 0.00 4.30
2111 5850 1.338769 ACCCAACGTCTTATGCACTCC 60.339 52.381 0.00 0.00 0.00 3.85
2112 5851 1.732259 CACCCAACGTCTTATGCACTC 59.268 52.381 0.00 0.00 0.00 3.51
2113 5852 1.346395 TCACCCAACGTCTTATGCACT 59.654 47.619 0.00 0.00 0.00 4.40
2114 5853 1.463444 GTCACCCAACGTCTTATGCAC 59.537 52.381 0.00 0.00 0.00 4.57
2115 5854 1.070914 TGTCACCCAACGTCTTATGCA 59.929 47.619 0.00 0.00 0.00 3.96
2116 5855 1.463444 GTGTCACCCAACGTCTTATGC 59.537 52.381 0.00 0.00 0.00 3.14
2117 5856 3.040147 AGTGTCACCCAACGTCTTATG 57.960 47.619 0.00 0.00 0.00 1.90
2118 5857 3.368116 GCTAGTGTCACCCAACGTCTTAT 60.368 47.826 0.00 0.00 0.00 1.73
2119 5858 2.029649 GCTAGTGTCACCCAACGTCTTA 60.030 50.000 0.00 0.00 0.00 2.10
2120 5859 1.270147 GCTAGTGTCACCCAACGTCTT 60.270 52.381 0.00 0.00 0.00 3.01
2121 5860 0.317479 GCTAGTGTCACCCAACGTCT 59.683 55.000 0.00 0.00 0.00 4.18
2122 5861 0.032952 TGCTAGTGTCACCCAACGTC 59.967 55.000 0.00 0.00 0.00 4.34
2123 5862 0.249741 GTGCTAGTGTCACCCAACGT 60.250 55.000 0.00 0.00 0.00 3.99
2124 5863 0.249699 TGTGCTAGTGTCACCCAACG 60.250 55.000 0.00 0.00 33.71 4.10
2125 5864 1.226746 GTGTGCTAGTGTCACCCAAC 58.773 55.000 0.00 0.00 33.71 3.77
2126 5865 0.107831 GGTGTGCTAGTGTCACCCAA 59.892 55.000 16.62 0.00 43.84 4.12
2127 5866 1.752198 GGTGTGCTAGTGTCACCCA 59.248 57.895 16.62 0.00 43.84 4.51
2128 5867 1.374252 CGGTGTGCTAGTGTCACCC 60.374 63.158 19.50 10.05 45.97 4.61
2129 5868 0.249741 AACGGTGTGCTAGTGTCACC 60.250 55.000 17.14 17.14 45.46 4.02
2130 5869 1.578583 AAACGGTGTGCTAGTGTCAC 58.421 50.000 0.00 0.00 35.14 3.67
2131 5870 2.319136 AAAACGGTGTGCTAGTGTCA 57.681 45.000 0.00 0.00 0.00 3.58
2168 5907 6.861065 AGCATAGTTAAATATCCACAACGG 57.139 37.500 0.00 0.00 0.00 4.44
2199 5938 9.382275 CCCACCTATTTTTCATTTTATTTGAGG 57.618 33.333 0.00 0.00 0.00 3.86
2200 5939 9.382275 CCCCACCTATTTTTCATTTTATTTGAG 57.618 33.333 0.00 0.00 0.00 3.02
2201 5940 7.826744 GCCCCACCTATTTTTCATTTTATTTGA 59.173 33.333 0.00 0.00 0.00 2.69
2202 5941 7.609532 TGCCCCACCTATTTTTCATTTTATTTG 59.390 33.333 0.00 0.00 0.00 2.32
2203 5942 7.694093 TGCCCCACCTATTTTTCATTTTATTT 58.306 30.769 0.00 0.00 0.00 1.40
2204 5943 7.181845 TCTGCCCCACCTATTTTTCATTTTATT 59.818 33.333 0.00 0.00 0.00 1.40
2205 5944 6.671779 TCTGCCCCACCTATTTTTCATTTTAT 59.328 34.615 0.00 0.00 0.00 1.40
2206 5945 6.019748 TCTGCCCCACCTATTTTTCATTTTA 58.980 36.000 0.00 0.00 0.00 1.52
2207 5946 4.843516 TCTGCCCCACCTATTTTTCATTTT 59.156 37.500 0.00 0.00 0.00 1.82
2208 5947 4.424842 TCTGCCCCACCTATTTTTCATTT 58.575 39.130 0.00 0.00 0.00 2.32
2209 5948 4.059773 TCTGCCCCACCTATTTTTCATT 57.940 40.909 0.00 0.00 0.00 2.57
2210 5949 3.756082 TCTGCCCCACCTATTTTTCAT 57.244 42.857 0.00 0.00 0.00 2.57
2211 5950 3.364549 CATCTGCCCCACCTATTTTTCA 58.635 45.455 0.00 0.00 0.00 2.69
2212 5951 2.695147 CCATCTGCCCCACCTATTTTTC 59.305 50.000 0.00 0.00 0.00 2.29
2213 5952 2.626683 CCCATCTGCCCCACCTATTTTT 60.627 50.000 0.00 0.00 0.00 1.94
2214 5953 1.062962 CCCATCTGCCCCACCTATTTT 60.063 52.381 0.00 0.00 0.00 1.82
2215 5954 0.557729 CCCATCTGCCCCACCTATTT 59.442 55.000 0.00 0.00 0.00 1.40
2216 5955 1.363530 CCCCATCTGCCCCACCTATT 61.364 60.000 0.00 0.00 0.00 1.73
2217 5956 1.775877 CCCCATCTGCCCCACCTAT 60.776 63.158 0.00 0.00 0.00 2.57
2218 5957 2.368192 CCCCATCTGCCCCACCTA 60.368 66.667 0.00 0.00 0.00 3.08
2219 5958 4.701437 ACCCCATCTGCCCCACCT 62.701 66.667 0.00 0.00 0.00 4.00
2220 5959 4.129148 GACCCCATCTGCCCCACC 62.129 72.222 0.00 0.00 0.00 4.61
2221 5960 2.917897 TTGACCCCATCTGCCCCAC 61.918 63.158 0.00 0.00 0.00 4.61
2222 5961 2.534011 TTGACCCCATCTGCCCCA 60.534 61.111 0.00 0.00 0.00 4.96
2223 5962 2.043953 GTTGACCCCATCTGCCCC 60.044 66.667 0.00 0.00 0.00 5.80
2224 5963 2.043953 GGTTGACCCCATCTGCCC 60.044 66.667 0.00 0.00 0.00 5.36
2225 5964 1.379044 CTGGTTGACCCCATCTGCC 60.379 63.158 0.00 0.00 33.00 4.85
2226 5965 0.038166 TTCTGGTTGACCCCATCTGC 59.962 55.000 0.00 0.00 33.00 4.26
2227 5966 1.352352 ACTTCTGGTTGACCCCATCTG 59.648 52.381 0.00 0.00 33.00 2.90
2228 5967 1.747444 ACTTCTGGTTGACCCCATCT 58.253 50.000 0.00 0.00 33.00 2.90
2229 5968 2.437413 GAACTTCTGGTTGACCCCATC 58.563 52.381 0.00 0.00 38.41 3.51
2230 5969 1.075536 GGAACTTCTGGTTGACCCCAT 59.924 52.381 0.00 0.00 38.41 4.00
2231 5970 0.476771 GGAACTTCTGGTTGACCCCA 59.523 55.000 0.00 0.00 38.41 4.96
2232 5971 0.771755 AGGAACTTCTGGTTGACCCC 59.228 55.000 0.00 0.00 38.41 4.95
2233 5972 3.409570 GTTAGGAACTTCTGGTTGACCC 58.590 50.000 0.00 0.00 41.75 4.46
2234 5973 3.409570 GGTTAGGAACTTCTGGTTGACC 58.590 50.000 0.00 0.00 41.75 4.02
2235 5974 3.409570 GGGTTAGGAACTTCTGGTTGAC 58.590 50.000 0.00 0.00 41.75 3.18
2236 5975 2.038033 CGGGTTAGGAACTTCTGGTTGA 59.962 50.000 0.00 0.00 41.75 3.18
2237 5976 2.423577 CGGGTTAGGAACTTCTGGTTG 58.576 52.381 0.00 0.00 41.75 3.77
2238 5977 1.350019 CCGGGTTAGGAACTTCTGGTT 59.650 52.381 0.00 0.00 41.75 3.67
2239 5978 0.981943 CCGGGTTAGGAACTTCTGGT 59.018 55.000 0.00 0.00 41.75 4.00
2240 5979 0.252197 CCCGGGTTAGGAACTTCTGG 59.748 60.000 14.18 0.00 41.75 3.86
2241 5980 1.207329 CTCCCGGGTTAGGAACTTCTG 59.793 57.143 22.86 0.00 41.75 3.02
2242 5981 1.569653 CTCCCGGGTTAGGAACTTCT 58.430 55.000 22.86 0.00 41.75 2.85
2243 5982 0.107800 GCTCCCGGGTTAGGAACTTC 60.108 60.000 22.86 0.00 41.75 3.01
2244 5983 0.838987 TGCTCCCGGGTTAGGAACTT 60.839 55.000 22.86 0.00 41.75 2.66
2245 5984 0.620700 ATGCTCCCGGGTTAGGAACT 60.621 55.000 22.86 0.00 46.37 3.01
2246 5985 0.463833 CATGCTCCCGGGTTAGGAAC 60.464 60.000 22.86 3.81 31.49 3.62
2247 5986 1.632018 CCATGCTCCCGGGTTAGGAA 61.632 60.000 22.86 4.44 31.49 3.36
2248 5987 2.070039 CCATGCTCCCGGGTTAGGA 61.070 63.158 22.86 13.78 0.00 2.94
2249 5988 1.418908 ATCCATGCTCCCGGGTTAGG 61.419 60.000 22.86 16.25 0.00 2.69
2250 5989 1.348064 TATCCATGCTCCCGGGTTAG 58.652 55.000 22.86 13.20 0.00 2.34
2251 5990 1.809133 TTATCCATGCTCCCGGGTTA 58.191 50.000 22.86 8.57 0.00 2.85
2252 5991 1.149101 ATTATCCATGCTCCCGGGTT 58.851 50.000 22.86 0.71 0.00 4.11
2253 5992 1.149101 AATTATCCATGCTCCCGGGT 58.851 50.000 22.86 0.00 0.00 5.28
2254 5993 2.162681 GAAATTATCCATGCTCCCGGG 58.837 52.381 16.85 16.85 0.00 5.73
2255 5994 2.862541 TGAAATTATCCATGCTCCCGG 58.137 47.619 0.00 0.00 0.00 5.73
2256 5995 3.885297 ACTTGAAATTATCCATGCTCCCG 59.115 43.478 0.00 0.00 0.00 5.14
2257 5996 5.221322 GGAACTTGAAATTATCCATGCTCCC 60.221 44.000 0.00 0.00 0.00 4.30
2258 5997 5.595952 AGGAACTTGAAATTATCCATGCTCC 59.404 40.000 0.00 0.00 27.25 4.70
2259 5998 6.705863 AGGAACTTGAAATTATCCATGCTC 57.294 37.500 0.00 0.00 27.25 4.26
2260 5999 8.773033 ATTAGGAACTTGAAATTATCCATGCT 57.227 30.769 0.00 0.00 41.75 3.79
2261 6000 8.084684 GGATTAGGAACTTGAAATTATCCATGC 58.915 37.037 0.00 0.00 41.75 4.06
2262 6001 8.292448 CGGATTAGGAACTTGAAATTATCCATG 58.708 37.037 0.00 0.00 41.75 3.66
2263 6002 7.448469 CCGGATTAGGAACTTGAAATTATCCAT 59.552 37.037 0.00 0.00 41.75 3.41
2264 6003 6.770785 CCGGATTAGGAACTTGAAATTATCCA 59.229 38.462 0.00 0.00 41.75 3.41
2265 6004 6.206829 CCCGGATTAGGAACTTGAAATTATCC 59.793 42.308 0.73 0.00 41.75 2.59
2266 6005 6.294010 GCCCGGATTAGGAACTTGAAATTATC 60.294 42.308 0.73 0.00 41.75 1.75
2267 6006 5.535030 GCCCGGATTAGGAACTTGAAATTAT 59.465 40.000 0.73 0.00 41.75 1.28
2268 6007 4.885325 GCCCGGATTAGGAACTTGAAATTA 59.115 41.667 0.73 0.00 41.75 1.40
2269 6008 3.699538 GCCCGGATTAGGAACTTGAAATT 59.300 43.478 0.73 0.00 41.75 1.82
2270 6009 3.288092 GCCCGGATTAGGAACTTGAAAT 58.712 45.455 0.73 0.00 41.75 2.17
2271 6010 2.718563 GCCCGGATTAGGAACTTGAAA 58.281 47.619 0.73 0.00 41.75 2.69
2272 6011 1.406341 CGCCCGGATTAGGAACTTGAA 60.406 52.381 0.73 0.00 41.75 2.69
2273 6012 0.177141 CGCCCGGATTAGGAACTTGA 59.823 55.000 0.73 0.00 41.75 3.02
2274 6013 1.436983 GCGCCCGGATTAGGAACTTG 61.437 60.000 0.73 0.00 41.75 3.16
2275 6014 1.153229 GCGCCCGGATTAGGAACTT 60.153 57.895 0.73 0.00 41.75 2.66
2276 6015 1.906105 TTGCGCCCGGATTAGGAACT 61.906 55.000 0.73 0.00 46.37 3.01
2277 6016 1.436983 CTTGCGCCCGGATTAGGAAC 61.437 60.000 0.73 0.00 0.00 3.62
2278 6017 1.153249 CTTGCGCCCGGATTAGGAA 60.153 57.895 0.73 0.00 0.00 3.36
2279 6018 1.618876 TTCTTGCGCCCGGATTAGGA 61.619 55.000 0.73 0.00 0.00 2.94
2280 6019 0.535102 ATTCTTGCGCCCGGATTAGG 60.535 55.000 0.73 0.00 0.00 2.69
2281 6020 2.163818 TATTCTTGCGCCCGGATTAG 57.836 50.000 0.73 0.00 0.00 1.73
2282 6021 2.623878 TTATTCTTGCGCCCGGATTA 57.376 45.000 0.73 0.00 0.00 1.75
2283 6022 1.981256 ATTATTCTTGCGCCCGGATT 58.019 45.000 0.73 0.00 0.00 3.01
2284 6023 1.981256 AATTATTCTTGCGCCCGGAT 58.019 45.000 0.73 0.00 0.00 4.18
2285 6024 1.757682 AAATTATTCTTGCGCCCGGA 58.242 45.000 0.73 0.00 0.00 5.14
2286 6025 2.192624 CAAAATTATTCTTGCGCCCGG 58.807 47.619 4.18 0.00 0.00 5.73
2287 6026 1.587946 GCAAAATTATTCTTGCGCCCG 59.412 47.619 4.18 0.00 38.66 6.13
2311 6050 2.286365 TGATTCTGACGGCCCTTTTT 57.714 45.000 0.00 0.00 0.00 1.94
2312 6051 2.286365 TTGATTCTGACGGCCCTTTT 57.714 45.000 0.00 0.00 0.00 2.27
2313 6052 2.025887 AGATTGATTCTGACGGCCCTTT 60.026 45.455 0.00 0.00 31.79 3.11
2314 6053 1.561542 AGATTGATTCTGACGGCCCTT 59.438 47.619 0.00 0.00 31.79 3.95
2315 6054 1.139853 GAGATTGATTCTGACGGCCCT 59.860 52.381 0.00 0.00 33.74 5.19
2316 6055 1.139853 AGAGATTGATTCTGACGGCCC 59.860 52.381 0.00 0.00 33.74 5.80
2317 6056 2.478831 GAGAGATTGATTCTGACGGCC 58.521 52.381 0.00 0.00 33.74 6.13
2318 6057 2.123342 CGAGAGATTGATTCTGACGGC 58.877 52.381 0.00 0.00 33.74 5.68
2319 6058 3.699779 TCGAGAGATTGATTCTGACGG 57.300 47.619 0.00 0.00 33.74 4.79
2333 6072 3.795150 GCTTCCTTGCTAGTGATCGAGAG 60.795 52.174 0.00 0.00 0.00 3.20
2334 6073 2.099921 GCTTCCTTGCTAGTGATCGAGA 59.900 50.000 0.00 0.00 0.00 4.04
2335 6074 2.468831 GCTTCCTTGCTAGTGATCGAG 58.531 52.381 0.00 0.00 0.00 4.04
2336 6075 1.202302 CGCTTCCTTGCTAGTGATCGA 60.202 52.381 0.00 0.00 0.00 3.59
2337 6076 1.203928 CGCTTCCTTGCTAGTGATCG 58.796 55.000 0.00 0.00 0.00 3.69
2338 6077 0.933796 GCGCTTCCTTGCTAGTGATC 59.066 55.000 0.00 0.00 0.00 2.92
2339 6078 0.250234 TGCGCTTCCTTGCTAGTGAT 59.750 50.000 9.73 0.00 0.00 3.06
2340 6079 0.670546 GTGCGCTTCCTTGCTAGTGA 60.671 55.000 9.73 0.00 0.00 3.41
2341 6080 1.790387 GTGCGCTTCCTTGCTAGTG 59.210 57.895 9.73 0.00 0.00 2.74
2342 6081 1.738099 CGTGCGCTTCCTTGCTAGT 60.738 57.895 9.73 0.00 0.00 2.57
2343 6082 3.084579 CGTGCGCTTCCTTGCTAG 58.915 61.111 9.73 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.