Multiple sequence alignment - TraesCS4D01G169000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G169000 chr4D 100.000 5119 0 0 1 5119 293866764 293861646 0.000000e+00 9454.0
1 TraesCS4D01G169000 chr4D 84.393 173 23 3 2 173 346475746 346475915 3.170000e-37 167.0
2 TraesCS4D01G169000 chr4D 76.952 269 46 14 33 292 346475601 346475862 6.910000e-29 139.0
3 TraesCS4D01G169000 chr4D 93.056 72 4 1 3585 3656 293863110 293863040 2.520000e-18 104.0
4 TraesCS4D01G169000 chr4D 93.056 72 4 1 3655 3725 293863180 293863109 2.520000e-18 104.0
5 TraesCS4D01G169000 chr4D 85.227 88 9 4 2393 2478 301303636 301303551 2.540000e-13 87.9
6 TraesCS4D01G169000 chr4D 77.612 134 21 8 36 161 396955388 396955256 7.110000e-09 73.1
7 TraesCS4D01G169000 chr4D 88.235 51 4 1 89 137 37539977 37539927 5.540000e-05 60.2
8 TraesCS4D01G169000 chr4D 92.683 41 1 2 111 150 37539870 37539831 1.990000e-04 58.4
9 TraesCS4D01G169000 chr4A 94.587 1681 56 9 2800 4465 323852235 323850575 0.000000e+00 2567.0
10 TraesCS4D01G169000 chr4A 97.119 1319 33 2 806 2123 323854443 323853129 0.000000e+00 2220.0
11 TraesCS4D01G169000 chr4A 92.667 600 26 7 2217 2801 323853130 323852534 0.000000e+00 848.0
12 TraesCS4D01G169000 chr4A 84.411 603 68 18 120 716 323888092 323887510 2.070000e-158 569.0
13 TraesCS4D01G169000 chr4A 88.043 460 36 8 4520 4973 323850576 323850130 1.260000e-145 527.0
14 TraesCS4D01G169000 chr4A 82.913 357 34 22 1 349 323888267 323887930 3.880000e-76 296.0
15 TraesCS4D01G169000 chr4A 77.810 347 55 19 2 337 637702307 637702642 1.450000e-45 195.0
16 TraesCS4D01G169000 chr4A 77.370 327 51 19 36 347 118990921 118990603 6.810000e-39 172.0
17 TraesCS4D01G169000 chr4A 82.812 192 27 6 8 195 118990772 118990583 3.170000e-37 167.0
18 TraesCS4D01G169000 chr4A 91.803 122 7 3 2121 2241 665186505 665186386 3.170000e-37 167.0
19 TraesCS4D01G169000 chr4A 97.222 72 2 0 3585 3656 323851387 323851316 6.960000e-24 122.0
20 TraesCS4D01G169000 chr4A 93.056 72 4 1 3655 3725 323851457 323851386 2.520000e-18 104.0
21 TraesCS4D01G169000 chr4A 100.000 29 0 0 715 743 323887496 323887468 3.000000e-03 54.7
22 TraesCS4D01G169000 chr4B 94.165 1611 56 20 740 2345 291856031 291854454 0.000000e+00 2420.0
23 TraesCS4D01G169000 chr4B 93.723 1147 40 11 2528 3656 291854161 291853029 0.000000e+00 1690.0
24 TraesCS4D01G169000 chr4B 91.834 649 25 8 3935 4557 291852094 291851448 0.000000e+00 880.0
25 TraesCS4D01G169000 chr4B 98.221 281 4 1 3655 3934 291853100 291852820 1.660000e-134 490.0
26 TraesCS4D01G169000 chr4B 87.150 428 28 9 4554 4973 291850770 291850362 1.300000e-125 460.0
27 TraesCS4D01G169000 chr4B 85.941 441 43 11 306 743 291856482 291856058 2.170000e-123 453.0
28 TraesCS4D01G169000 chr4B 74.924 327 64 15 33 347 427519736 427520056 3.220000e-27 134.0
29 TraesCS4D01G169000 chr4B 76.829 246 43 12 111 349 91325823 91325585 5.380000e-25 126.0
30 TraesCS4D01G169000 chr4B 89.796 98 9 1 2362 2459 291854249 291854153 1.940000e-24 124.0
31 TraesCS4D01G169000 chr4B 98.438 64 1 0 4494 4557 291851356 291851293 4.190000e-21 113.0
32 TraesCS4D01G169000 chr1B 96.474 312 11 0 972 1283 655799107 655798796 2.730000e-142 516.0
33 TraesCS4D01G169000 chr1B 98.298 235 4 0 1393 1627 655798798 655798564 3.690000e-111 412.0
34 TraesCS4D01G169000 chr1B 97.340 188 5 0 1895 2082 655798472 655798285 2.300000e-83 320.0
35 TraesCS4D01G169000 chr1B 94.697 132 6 1 3723 3853 655798288 655798157 2.420000e-48 204.0
36 TraesCS4D01G169000 chr1B 96.364 110 4 0 2114 2223 429610630 429610739 1.130000e-41 182.0
37 TraesCS4D01G169000 chr1B 96.040 101 3 1 1718 1817 655798566 655798466 4.100000e-36 163.0
38 TraesCS4D01G169000 chr1B 78.146 151 24 6 204 347 427471282 427471134 2.540000e-13 87.9
39 TraesCS4D01G169000 chr1B 89.130 46 4 1 305 349 666248765 666248810 7.160000e-04 56.5
40 TraesCS4D01G169000 chr7D 97.973 148 3 0 4972 5119 26528438 26528291 1.830000e-64 257.0
41 TraesCS4D01G169000 chr7D 97.973 148 3 0 4972 5119 489006250 489006397 1.830000e-64 257.0
42 TraesCS4D01G169000 chr7D 74.627 268 55 12 90 349 15075819 15076081 7.010000e-19 106.0
43 TraesCS4D01G169000 chr7D 80.142 141 24 4 111 248 6103394 6103533 9.070000e-18 102.0
44 TraesCS4D01G169000 chr7D 81.343 134 17 8 2122 2252 376561712 376561584 9.070000e-18 102.0
45 TraesCS4D01G169000 chr7D 80.909 110 16 3 31 138 89612707 89612601 1.180000e-11 82.4
46 TraesCS4D01G169000 chr5D 97.973 148 3 0 4972 5119 175936846 175936699 1.830000e-64 257.0
47 TraesCS4D01G169000 chr5D 97.333 150 4 0 4970 5119 413430468 413430617 6.580000e-64 255.0
48 TraesCS4D01G169000 chr5D 97.315 149 4 0 4971 5119 438445996 438445848 2.370000e-63 254.0
49 TraesCS4D01G169000 chr5D 97.315 149 4 0 4971 5119 565832288 565832436 2.370000e-63 254.0
50 TraesCS4D01G169000 chr5D 78.832 137 22 6 218 349 4803731 4803597 9.130000e-13 86.1
51 TraesCS4D01G169000 chr5D 96.970 33 1 0 315 347 227396865 227396833 7.160000e-04 56.5
52 TraesCS4D01G169000 chr5D 86.275 51 5 1 90 138 349075094 349075044 3.000000e-03 54.7
53 TraesCS4D01G169000 chr5D 100.000 29 0 0 321 349 459352893 459352865 3.000000e-03 54.7
54 TraesCS4D01G169000 chr2D 97.351 151 4 0 4969 5119 527495023 527495173 1.830000e-64 257.0
55 TraesCS4D01G169000 chr2D 97.315 149 4 0 4971 5119 445386804 445386656 2.370000e-63 254.0
56 TraesCS4D01G169000 chr2D 76.923 156 25 11 59 206 373161 373313 1.530000e-10 78.7
57 TraesCS4D01G169000 chr2D 74.167 240 38 15 127 349 131648100 131648332 1.530000e-10 78.7
58 TraesCS4D01G169000 chr6D 96.732 153 5 0 4967 5119 427005401 427005249 6.580000e-64 255.0
59 TraesCS4D01G169000 chr6D 94.737 114 4 2 2113 2225 466538238 466538126 5.270000e-40 176.0
60 TraesCS4D01G169000 chr6D 77.622 286 49 13 59 335 26090318 26090597 5.310000e-35 159.0
61 TraesCS4D01G169000 chr6D 93.478 46 2 1 111 156 108678261 108678217 3.310000e-07 67.6
62 TraesCS4D01G169000 chr6D 87.755 49 6 0 90 138 68903574 68903622 1.990000e-04 58.4
63 TraesCS4D01G169000 chr6B 95.614 114 4 1 2115 2227 517835967 517836080 1.130000e-41 182.0
64 TraesCS4D01G169000 chr6B 75.087 289 54 17 71 349 184634556 184634836 9.000000e-23 119.0
65 TraesCS4D01G169000 chr6B 83.333 78 12 1 278 354 617343642 617343565 2.560000e-08 71.3
66 TraesCS4D01G169000 chr3B 98.077 104 2 0 2116 2219 560117403 560117300 1.130000e-41 182.0
67 TraesCS4D01G169000 chr3B 86.905 84 8 3 2396 2478 193630824 193630905 1.960000e-14 91.6
68 TraesCS4D01G169000 chr2B 96.429 112 1 3 2113 2223 457144384 457144493 1.130000e-41 182.0
69 TraesCS4D01G169000 chr2B 96.330 109 4 0 2111 2219 397939363 397939471 4.070000e-41 180.0
70 TraesCS4D01G169000 chr2B 96.364 110 3 1 2114 2223 752488065 752488173 4.070000e-41 180.0
71 TraesCS4D01G169000 chr2B 94.783 115 3 3 2122 2234 397451393 397451506 5.270000e-40 176.0
72 TraesCS4D01G169000 chr2B 81.119 143 20 7 111 250 708204383 708204245 1.950000e-19 108.0
73 TraesCS4D01G169000 chr2B 74.582 299 48 20 69 349 186379602 186379314 7.010000e-19 106.0
74 TraesCS4D01G169000 chr2B 86.747 83 8 3 2397 2478 796337000 796337080 7.060000e-14 89.8
75 TraesCS4D01G169000 chr2B 82.022 89 13 3 263 349 573197248 573197161 7.110000e-09 73.1
76 TraesCS4D01G169000 chr2A 98.077 104 2 0 2116 2219 92494528 92494425 1.130000e-41 182.0
77 TraesCS4D01G169000 chr7B 74.648 497 83 28 219 696 704244112 704244584 4.070000e-41 180.0
78 TraesCS4D01G169000 chr7B 86.747 83 8 3 2397 2478 192363207 192363127 7.060000e-14 89.8
79 TraesCS4D01G169000 chr7B 82.178 101 12 6 2122 2219 245991840 245991937 1.180000e-11 82.4
80 TraesCS4D01G169000 chr5A 90.323 124 9 3 2117 2239 584069151 584069272 5.310000e-35 159.0
81 TraesCS4D01G169000 chr5A 81.481 135 19 5 234 363 702888545 702888412 7.010000e-19 106.0
82 TraesCS4D01G169000 chr1D 79.386 228 33 10 201 426 59096914 59096699 1.150000e-31 148.0
83 TraesCS4D01G169000 chr1D 85.393 89 9 3 2394 2480 280705110 280705024 7.060000e-14 89.8
84 TraesCS4D01G169000 chr7A 75.841 327 52 22 37 349 511109709 511109396 1.920000e-29 141.0
85 TraesCS4D01G169000 chr7A 74.910 279 53 12 68 338 9738323 9738054 1.510000e-20 111.0
86 TraesCS4D01G169000 chr3A 76.190 315 43 24 1 291 724042340 724042034 2.490000e-28 137.0
87 TraesCS4D01G169000 chr3A 82.099 162 20 7 1 158 674094577 674094421 4.160000e-26 130.0
88 TraesCS4D01G169000 chr5B 80.368 163 26 6 86 245 450088700 450088859 9.000000e-23 119.0
89 TraesCS4D01G169000 chr5B 80.992 121 19 3 44 163 450088725 450088842 5.460000e-15 93.5
90 TraesCS4D01G169000 chr5B 85.714 84 9 3 2396 2478 405524040 405523959 9.130000e-13 86.1
91 TraesCS4D01G169000 chr5B 79.200 125 18 8 2121 2240 349671554 349671433 4.250000e-11 80.5
92 TraesCS4D01G169000 chr6A 82.963 135 16 4 219 347 63098157 63098290 1.160000e-21 115.0
93 TraesCS4D01G169000 chr6A 86.905 84 10 1 2397 2479 603028946 603028863 5.460000e-15 93.5
94 TraesCS4D01G169000 chr3D 80.208 96 15 3 45 138 209699328 209699421 9.200000e-08 69.4
95 TraesCS4D01G169000 chr3D 89.796 49 4 1 90 138 13609255 13609208 1.540000e-05 62.1
96 TraesCS4D01G169000 chr3D 81.579 76 11 2 39 114 442862791 442862863 5.540000e-05 60.2
97 TraesCS4D01G169000 chr3D 100.000 28 0 0 2591 2618 550822824 550822851 9.000000e-03 52.8
98 TraesCS4D01G169000 chr1A 81.395 86 14 2 263 346 457042898 457042983 9.200000e-08 69.4
99 TraesCS4D01G169000 chr1A 79.208 101 14 4 53 150 457042886 457042982 4.280000e-06 63.9
100 TraesCS4D01G169000 chr1A 88.000 50 5 1 90 138 64553517 64553566 1.990000e-04 58.4
101 TraesCS4D01G169000 chr1A 78.351 97 15 4 44 138 556437333 556437425 1.990000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G169000 chr4D 293861646 293866764 5118 True 3220.666667 9454 95.370667 1 5119 3 chr4D.!!$R4 5118
1 TraesCS4D01G169000 chr4A 323850130 323854443 4313 True 1064.666667 2567 93.782333 806 4973 6 chr4A.!!$R3 4167
2 TraesCS4D01G169000 chr4A 323887468 323888267 799 True 306.566667 569 89.108000 1 743 3 chr4A.!!$R4 742
3 TraesCS4D01G169000 chr4B 291850362 291856482 6120 True 828.750000 2420 92.408500 306 4973 8 chr4B.!!$R2 4667
4 TraesCS4D01G169000 chr1B 655798157 655799107 950 True 323.000000 516 96.569800 972 3853 5 chr1B.!!$R2 2881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 689 0.391597 AACATGACACGGACTCGGTT 59.608 50.000 0.00 0.0 41.39 4.44 F
632 698 0.460284 CGGACTCGGTTGCTAGCATT 60.460 55.000 20.13 0.0 0.00 3.56 F
2137 2252 0.635009 AGATACTCCCTCCGTCCCAA 59.365 55.000 0.00 0.0 0.00 4.12 F
3273 3898 1.064758 TCCCTTGCTTTACGCCATCAT 60.065 47.619 0.00 0.0 38.05 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 2316 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.0 0.00 0.00 0.00 4.12 R
2577 2890 1.839424 ACTCCACCCATTAGCTTTGC 58.161 50.0 0.00 0.00 0.00 3.68 R
3695 4391 0.033920 CAAGCAAACAAAGGGGGCTC 59.966 55.0 0.00 0.00 32.84 4.70 R
4580 6707 0.179032 ATTTCAGTGTCACCGGCACA 60.179 50.0 12.43 7.99 39.17 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.769688 TGCTGACCATGTATTCGAGAAAT 58.230 39.130 0.00 0.00 0.00 2.17
76 77 7.201609 GCTGACCATGTATTCGAGAAATGTTAA 60.202 37.037 0.00 0.00 0.00 2.01
84 85 9.268268 TGTATTCGAGAAATGTTAAACTTGTCT 57.732 29.630 0.00 0.00 0.00 3.41
301 366 9.214957 TGTATAGAAAAACTGTTGACCATGTAG 57.785 33.333 0.00 0.00 0.00 2.74
303 368 6.619801 AGAAAAACTGTTGACCATGTAGTC 57.380 37.500 0.00 0.00 37.28 2.59
401 466 5.051153 GTGAAAACCGAGAGAGAGAAAACT 58.949 41.667 0.00 0.00 0.00 2.66
416 481 8.145122 AGAGAGAAAACTCGATGAAAAAGTAGT 58.855 33.333 0.00 0.00 41.25 2.73
440 506 5.549742 AGAAAGAATGCCAATGAAAACCA 57.450 34.783 0.00 0.00 0.00 3.67
447 513 2.170187 TGCCAATGAAAACCAAGCAAGT 59.830 40.909 0.00 0.00 0.00 3.16
459 525 4.747810 ACCAAGCAAGTCACAAAGAAAAG 58.252 39.130 0.00 0.00 0.00 2.27
466 532 7.378181 AGCAAGTCACAAAGAAAAGAAAAGAA 58.622 30.769 0.00 0.00 0.00 2.52
506 572 7.612677 ACCCAGTAAAAACAATGTAAACAACA 58.387 30.769 0.00 0.00 43.86 3.33
623 689 0.391597 AACATGACACGGACTCGGTT 59.608 50.000 0.00 0.00 41.39 4.44
632 698 0.460284 CGGACTCGGTTGCTAGCATT 60.460 55.000 20.13 0.00 0.00 3.56
688 754 1.607148 CGGTTTCGCTCCCTTTTTCTT 59.393 47.619 0.00 0.00 0.00 2.52
756 869 2.964911 CGAGATCCTTCCAACTCGC 58.035 57.895 0.00 0.00 43.71 5.03
765 878 3.888930 TCCTTCCAACTCGCTTGATTTTT 59.111 39.130 0.00 0.00 30.42 1.94
766 879 3.983344 CCTTCCAACTCGCTTGATTTTTG 59.017 43.478 0.00 0.00 30.42 2.44
794 908 1.556911 AGATGACCCAACTCGCTTGAT 59.443 47.619 0.00 0.00 30.42 2.57
795 909 1.667724 GATGACCCAACTCGCTTGATG 59.332 52.381 0.00 0.00 30.42 3.07
796 910 0.955428 TGACCCAACTCGCTTGATGC 60.955 55.000 0.00 0.00 38.57 3.91
817 931 2.852413 CGAGATATAATCGCCGCGAAAT 59.148 45.455 21.02 17.76 39.99 2.17
843 958 2.406616 GGCCATGTTCGACCGCATT 61.407 57.895 0.00 0.00 0.00 3.56
1099 1214 4.069232 GAAAAGGCCCGGGCAAGC 62.069 66.667 44.46 28.64 44.11 4.01
1179 1294 4.458829 ACCGGCGAGAGGATCCCA 62.459 66.667 9.30 0.00 33.66 4.37
1266 1381 2.216148 GCTCATGCTCCCCTACACT 58.784 57.895 0.00 0.00 36.03 3.55
1327 1442 3.989787 CCGCAGCCCCAAACCAAC 61.990 66.667 0.00 0.00 0.00 3.77
1860 1975 8.279103 CGATGGAACTTTATATCTTCTTTCTGC 58.721 37.037 0.00 0.00 0.00 4.26
1881 1996 7.438564 TCTGCCATACTAAAATGATAGCGTAA 58.561 34.615 0.00 0.00 0.00 3.18
1885 2000 9.329913 GCCATACTAAAATGATAGCGTAATTTG 57.670 33.333 0.00 0.00 0.00 2.32
1974 2089 2.971660 TCGATTTCCGGCATTACTCA 57.028 45.000 0.00 0.00 39.14 3.41
2101 2216 7.226720 TGACAAAGTAAGAACTGAATCACCTTC 59.773 37.037 0.00 0.00 35.62 3.46
2137 2252 0.635009 AGATACTCCCTCCGTCCCAA 59.365 55.000 0.00 0.00 0.00 4.12
2141 2256 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2142 2257 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2143 2258 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2144 2259 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2146 2261 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2148 2263 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2150 2265 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2151 2266 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2152 2267 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
2153 2268 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
2155 2270 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
2156 2271 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2157 2272 7.001674 TCCCAAAATAAGTGTCTTGAGCTTAA 58.998 34.615 0.00 0.00 0.00 1.85
2158 2273 7.669722 TCCCAAAATAAGTGTCTTGAGCTTAAT 59.330 33.333 0.00 0.00 0.00 1.40
2159 2274 8.956426 CCCAAAATAAGTGTCTTGAGCTTAATA 58.044 33.333 0.00 0.00 0.00 0.98
2160 2275 9.774742 CCAAAATAAGTGTCTTGAGCTTAATAC 57.225 33.333 0.37 0.37 0.00 1.89
2177 2292 9.892130 AGCTTAATACAAATTTGTACTAGAGCT 57.108 29.630 30.45 30.45 45.47 4.09
2193 2308 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
2194 2309 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
2195 2310 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
2196 2311 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
2197 2312 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
2201 2316 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
2288 2403 4.039609 GCCATCTAGAATGGGAAAATTGGG 59.960 45.833 17.61 0.00 39.53 4.12
2378 2691 5.316987 CCAACAGTTTCATAGTTTCCCTCT 58.683 41.667 0.00 0.00 0.00 3.69
2421 2734 6.120220 ACTCCCTCCATTTTTATTTACTCCG 58.880 40.000 0.00 0.00 0.00 4.63
2577 2890 8.856103 TCAATTTTTCTAAAGTTTGACCTAGGG 58.144 33.333 14.81 0.00 0.00 3.53
2629 2942 7.517614 ACAGAGGTAGTATGTAGACATGATG 57.482 40.000 0.00 0.00 37.15 3.07
2639 2952 8.309656 AGTATGTAGACATGATGTGATATGTGG 58.690 37.037 1.23 0.00 37.63 4.17
2697 3010 5.521906 TTCTACACTCCTATCACATGCTC 57.478 43.478 0.00 0.00 0.00 4.26
2715 3028 2.481276 GCTCGAAAACTTGCAACCCTTT 60.481 45.455 0.00 0.00 0.00 3.11
2728 3041 5.260424 TGCAACCCTTTTAAGCAGATCATA 58.740 37.500 0.00 0.00 0.00 2.15
2740 3053 3.764434 AGCAGATCATAGTATGTACCCCG 59.236 47.826 9.94 0.00 0.00 5.73
2765 3079 9.729023 CGTCCATTTCAAATACTTTGCATATTA 57.271 29.630 0.00 0.00 40.43 0.98
2798 3408 7.145323 GCTTGGCTAAGTCTTTGAACAATTAA 58.855 34.615 11.80 0.00 36.27 1.40
2882 3500 5.745312 AGTGACATCAATGTTAGGTCAGA 57.255 39.130 0.00 0.00 41.95 3.27
2936 3554 7.339212 CCATGTCCACTGAAACCATTTAAGATA 59.661 37.037 0.00 0.00 0.00 1.98
3022 3647 9.209175 CAGTGCTTATAGATGGTTTTATCTACC 57.791 37.037 0.00 0.00 41.17 3.18
3077 3702 3.820557 TCTGTTGCTTTTAGACCAGCTT 58.179 40.909 0.00 0.00 36.92 3.74
3083 3708 2.161211 GCTTTTAGACCAGCTTGCTCAG 59.839 50.000 0.00 0.00 32.87 3.35
3222 3847 4.145052 CCCTTTCCTAACTATCCATTGCC 58.855 47.826 0.00 0.00 0.00 4.52
3273 3898 1.064758 TCCCTTGCTTTACGCCATCAT 60.065 47.619 0.00 0.00 38.05 2.45
3656 4352 3.806380 TGTTTGCTTGTCCATTTGCAAT 58.194 36.364 0.00 0.00 43.53 3.56
3657 4353 4.953667 TGTTTGCTTGTCCATTTGCAATA 58.046 34.783 0.00 0.00 43.53 1.90
3658 4354 4.749099 TGTTTGCTTGTCCATTTGCAATAC 59.251 37.500 0.00 0.00 43.53 1.89
3659 4355 4.597404 TTGCTTGTCCATTTGCAATACA 57.403 36.364 0.00 0.00 39.98 2.29
3660 4356 4.597404 TGCTTGTCCATTTGCAATACAA 57.403 36.364 0.00 8.29 36.13 2.41
3661 4357 4.305769 TGCTTGTCCATTTGCAATACAAC 58.694 39.130 0.00 0.00 38.23 3.32
3662 4358 3.679502 GCTTGTCCATTTGCAATACAACC 59.320 43.478 0.00 0.00 38.23 3.77
3663 4359 4.798924 GCTTGTCCATTTGCAATACAACCA 60.799 41.667 0.00 0.00 38.23 3.67
3664 4360 4.944619 TGTCCATTTGCAATACAACCAA 57.055 36.364 0.00 0.00 38.23 3.67
3665 4361 5.282055 TGTCCATTTGCAATACAACCAAA 57.718 34.783 0.00 0.00 38.23 3.28
3666 4362 5.295950 TGTCCATTTGCAATACAACCAAAG 58.704 37.500 0.00 0.00 38.23 2.77
3667 4363 4.152223 GTCCATTTGCAATACAACCAAAGC 59.848 41.667 0.00 0.00 38.23 3.51
3668 4364 4.040217 TCCATTTGCAATACAACCAAAGCT 59.960 37.500 0.00 0.00 38.23 3.74
3669 4365 5.244851 TCCATTTGCAATACAACCAAAGCTA 59.755 36.000 0.00 0.00 38.23 3.32
3670 4366 5.348451 CCATTTGCAATACAACCAAAGCTAC 59.652 40.000 0.00 0.00 38.23 3.58
3671 4367 5.782893 TTTGCAATACAACCAAAGCTACT 57.217 34.783 0.00 0.00 38.23 2.57
3672 4368 4.764679 TGCAATACAACCAAAGCTACTG 57.235 40.909 0.00 0.00 0.00 2.74
3673 4369 4.141287 TGCAATACAACCAAAGCTACTGT 58.859 39.130 0.00 0.00 0.00 3.55
3674 4370 4.582656 TGCAATACAACCAAAGCTACTGTT 59.417 37.500 0.00 0.00 0.00 3.16
3675 4371 5.068460 TGCAATACAACCAAAGCTACTGTTT 59.932 36.000 0.00 0.00 0.00 2.83
3676 4372 5.629435 GCAATACAACCAAAGCTACTGTTTC 59.371 40.000 0.00 0.00 0.00 2.78
3677 4373 6.515035 GCAATACAACCAAAGCTACTGTTTCT 60.515 38.462 0.00 0.00 0.00 2.52
3678 4374 6.803154 ATACAACCAAAGCTACTGTTTCTC 57.197 37.500 0.00 0.00 0.00 2.87
3679 4375 4.523083 ACAACCAAAGCTACTGTTTCTCA 58.477 39.130 0.00 0.00 0.00 3.27
3680 4376 4.947388 ACAACCAAAGCTACTGTTTCTCAA 59.053 37.500 0.00 0.00 0.00 3.02
3681 4377 5.417580 ACAACCAAAGCTACTGTTTCTCAAA 59.582 36.000 0.00 0.00 0.00 2.69
3682 4378 6.096846 ACAACCAAAGCTACTGTTTCTCAAAT 59.903 34.615 0.00 0.00 0.00 2.32
3683 4379 6.715347 ACCAAAGCTACTGTTTCTCAAATT 57.285 33.333 0.00 0.00 0.00 1.82
3684 4380 6.739112 ACCAAAGCTACTGTTTCTCAAATTC 58.261 36.000 0.00 0.00 0.00 2.17
3685 4381 6.547510 ACCAAAGCTACTGTTTCTCAAATTCT 59.452 34.615 0.00 0.00 0.00 2.40
3686 4382 6.860023 CCAAAGCTACTGTTTCTCAAATTCTG 59.140 38.462 0.00 0.00 0.00 3.02
3687 4383 7.420800 CAAAGCTACTGTTTCTCAAATTCTGT 58.579 34.615 0.00 0.00 0.00 3.41
3688 4384 6.793492 AGCTACTGTTTCTCAAATTCTGTC 57.207 37.500 0.00 0.00 0.00 3.51
3689 4385 6.529220 AGCTACTGTTTCTCAAATTCTGTCT 58.471 36.000 0.00 0.00 0.00 3.41
3690 4386 7.671302 AGCTACTGTTTCTCAAATTCTGTCTA 58.329 34.615 0.00 0.00 0.00 2.59
3691 4387 8.317679 AGCTACTGTTTCTCAAATTCTGTCTAT 58.682 33.333 0.00 0.00 0.00 1.98
3692 4388 9.587772 GCTACTGTTTCTCAAATTCTGTCTATA 57.412 33.333 0.00 0.00 0.00 1.31
3698 4394 9.928236 GTTTCTCAAATTCTGTCTATAATGAGC 57.072 33.333 0.00 0.00 34.51 4.26
3699 4395 8.668510 TTCTCAAATTCTGTCTATAATGAGCC 57.331 34.615 0.00 0.00 34.51 4.70
3700 4396 7.220030 TCTCAAATTCTGTCTATAATGAGCCC 58.780 38.462 0.00 0.00 34.51 5.19
3701 4397 6.299141 TCAAATTCTGTCTATAATGAGCCCC 58.701 40.000 0.00 0.00 0.00 5.80
3702 4398 4.917906 ATTCTGTCTATAATGAGCCCCC 57.082 45.455 0.00 0.00 0.00 5.40
3703 4399 3.637821 TCTGTCTATAATGAGCCCCCT 57.362 47.619 0.00 0.00 0.00 4.79
3704 4400 3.941629 TCTGTCTATAATGAGCCCCCTT 58.058 45.455 0.00 0.00 0.00 3.95
3705 4401 4.307259 TCTGTCTATAATGAGCCCCCTTT 58.693 43.478 0.00 0.00 0.00 3.11
3706 4402 4.103153 TCTGTCTATAATGAGCCCCCTTTG 59.897 45.833 0.00 0.00 0.00 2.77
3707 4403 3.785887 TGTCTATAATGAGCCCCCTTTGT 59.214 43.478 0.00 0.00 0.00 2.83
3708 4404 4.229582 TGTCTATAATGAGCCCCCTTTGTT 59.770 41.667 0.00 0.00 0.00 2.83
3709 4405 5.201243 GTCTATAATGAGCCCCCTTTGTTT 58.799 41.667 0.00 0.00 0.00 2.83
3710 4406 5.067805 GTCTATAATGAGCCCCCTTTGTTTG 59.932 44.000 0.00 0.00 0.00 2.93
3711 4407 0.686789 AATGAGCCCCCTTTGTTTGC 59.313 50.000 0.00 0.00 0.00 3.68
3712 4408 0.178924 ATGAGCCCCCTTTGTTTGCT 60.179 50.000 0.00 0.00 34.40 3.91
3713 4409 0.398381 TGAGCCCCCTTTGTTTGCTT 60.398 50.000 0.00 0.00 31.23 3.91
3714 4410 0.033920 GAGCCCCCTTTGTTTGCTTG 59.966 55.000 0.00 0.00 31.23 4.01
3715 4411 0.690744 AGCCCCCTTTGTTTGCTTGT 60.691 50.000 0.00 0.00 0.00 3.16
3716 4412 0.249868 GCCCCCTTTGTTTGCTTGTC 60.250 55.000 0.00 0.00 0.00 3.18
3717 4413 0.392706 CCCCCTTTGTTTGCTTGTCC 59.607 55.000 0.00 0.00 0.00 4.02
3718 4414 1.118838 CCCCTTTGTTTGCTTGTCCA 58.881 50.000 0.00 0.00 0.00 4.02
3719 4415 1.693606 CCCCTTTGTTTGCTTGTCCAT 59.306 47.619 0.00 0.00 0.00 3.41
3720 4416 2.104622 CCCCTTTGTTTGCTTGTCCATT 59.895 45.455 0.00 0.00 0.00 3.16
3721 4417 3.132925 CCCTTTGTTTGCTTGTCCATTG 58.867 45.455 0.00 0.00 0.00 2.82
3722 4418 2.545106 CCTTTGTTTGCTTGTCCATTGC 59.455 45.455 0.00 0.00 0.00 3.56
3723 4419 2.975732 TTGTTTGCTTGTCCATTGCA 57.024 40.000 0.00 0.00 34.69 4.08
3724 4420 2.975732 TGTTTGCTTGTCCATTGCAA 57.024 40.000 0.00 0.00 43.69 4.08
3948 5369 1.066908 CATTTGCTGACGTGGTGGTTT 59.933 47.619 0.00 0.00 0.00 3.27
3997 5418 4.998671 TTTTGTCCTGAACTTCAATGCA 57.001 36.364 0.00 0.00 0.00 3.96
4079 5503 3.171528 TGAGGATATGATGGAGCTGGAG 58.828 50.000 0.00 0.00 0.00 3.86
4128 5552 4.335874 GTGACGAAGAGTAGCCTAGATGAA 59.664 45.833 0.00 0.00 0.00 2.57
4131 5555 4.951094 ACGAAGAGTAGCCTAGATGAACTT 59.049 41.667 0.00 0.00 0.00 2.66
4185 5612 4.470334 AAAATGTGAAGCAACTGGTGTT 57.530 36.364 0.00 0.00 36.75 3.32
4294 5740 6.147864 TGCAGTGATAATCCTTATTTTGGC 57.852 37.500 0.00 0.00 0.00 4.52
4301 5747 7.004086 TGATAATCCTTATTTTGGCCGAATCT 58.996 34.615 6.16 0.00 0.00 2.40
4304 5750 4.792068 TCCTTATTTTGGCCGAATCTGAT 58.208 39.130 6.16 0.00 0.00 2.90
4307 5753 5.163519 CCTTATTTTGGCCGAATCTGATTGT 60.164 40.000 6.16 0.00 0.00 2.71
4404 5850 1.001487 TGCTGCGTTTGAAGTTGGATG 60.001 47.619 0.00 0.00 0.00 3.51
4405 5851 1.689959 CTGCGTTTGAAGTTGGATGC 58.310 50.000 0.00 0.00 0.00 3.91
4432 5878 7.758980 TGGATTGTGAATTATTTTCATGGAACG 59.241 33.333 0.00 0.00 0.00 3.95
4478 5924 4.039603 AGAATTGCTGTAAAGGCTTCCT 57.960 40.909 0.00 0.00 33.87 3.36
4487 5933 1.290134 AAAGGCTTCCTAGGACCTGG 58.710 55.000 19.22 0.00 31.13 4.45
4488 5934 0.621862 AAGGCTTCCTAGGACCTGGG 60.622 60.000 19.22 17.83 31.13 4.45
4540 6141 0.036306 AGCGATCCGGTTTCAGGTTT 59.964 50.000 0.00 0.00 32.22 3.27
4557 6684 2.035066 GGTTTGTTCTTGTGCAGCAGAT 59.965 45.455 0.00 0.00 0.00 2.90
4580 6707 6.092955 TGAAGCAGAAATTCAGAAATTGCT 57.907 33.333 0.00 7.75 40.80 3.91
4604 6731 2.504367 CCGGTGACACTGAAATCCTTT 58.496 47.619 16.28 0.00 0.00 3.11
4613 6740 2.012673 CTGAAATCCTTTCTCGCTGGG 58.987 52.381 1.74 0.00 40.32 4.45
4615 6742 2.010497 GAAATCCTTTCTCGCTGGGAC 58.990 52.381 0.00 0.00 36.73 4.46
4618 6745 1.183030 TCCTTTCTCGCTGGGACGAA 61.183 55.000 0.00 0.00 42.39 3.85
4625 6752 1.661112 CTCGCTGGGACGAATTTTCTC 59.339 52.381 0.00 0.00 42.39 2.87
4661 6788 4.532126 TCTCTGGGTTCAGCTATCTTTTCA 59.468 41.667 0.00 0.00 40.69 2.69
4665 6792 4.263905 TGGGTTCAGCTATCTTTTCACCAT 60.264 41.667 0.00 0.00 0.00 3.55
4672 6807 5.065731 CAGCTATCTTTTCACCATGGTCTTC 59.934 44.000 16.53 0.00 0.00 2.87
4674 6809 3.762407 TCTTTTCACCATGGTCTTCGA 57.238 42.857 16.53 6.46 0.00 3.71
4677 6812 3.417069 TTTCACCATGGTCTTCGATGT 57.583 42.857 16.53 0.00 0.00 3.06
4681 6816 3.073678 CACCATGGTCTTCGATGTCAAA 58.926 45.455 16.53 0.00 0.00 2.69
4682 6817 3.501828 CACCATGGTCTTCGATGTCAAAA 59.498 43.478 16.53 0.00 0.00 2.44
4698 6833 4.519350 TGTCAAAATTTGCCGTGGTGTATA 59.481 37.500 0.00 0.00 0.00 1.47
4701 6836 4.911514 AAATTTGCCGTGGTGTATATCC 57.088 40.909 0.00 0.00 0.00 2.59
4702 6837 3.857157 ATTTGCCGTGGTGTATATCCT 57.143 42.857 0.00 0.00 0.00 3.24
4703 6838 2.613026 TTGCCGTGGTGTATATCCTG 57.387 50.000 0.00 0.00 0.00 3.86
4712 6849 6.277605 CGTGGTGTATATCCTGTACATTTGA 58.722 40.000 0.00 0.00 34.83 2.69
4766 6904 2.113986 GGTGGGCACACTTGAGCT 59.886 61.111 20.52 0.00 46.85 4.09
4768 6906 1.656441 GTGGGCACACTTGAGCTTG 59.344 57.895 13.14 0.00 44.29 4.01
4769 6907 1.103398 GTGGGCACACTTGAGCTTGT 61.103 55.000 13.14 0.00 44.29 3.16
4770 6908 0.819259 TGGGCACACTTGAGCTTGTC 60.819 55.000 0.00 0.00 0.00 3.18
4781 6924 5.468072 CACTTGAGCTTGTCAGTGTAATCTT 59.532 40.000 0.00 0.00 36.21 2.40
4927 7070 0.107703 AATCCGAGATCTTGCCGCAA 60.108 50.000 5.52 5.52 0.00 4.85
4973 7116 2.782198 ACTTTTCTCGCGCGATTTAC 57.218 45.000 34.86 0.00 0.00 2.01
4974 7117 2.334838 ACTTTTCTCGCGCGATTTACT 58.665 42.857 34.86 11.53 0.00 2.24
4975 7118 2.344741 ACTTTTCTCGCGCGATTTACTC 59.655 45.455 34.86 0.00 0.00 2.59
4976 7119 1.274596 TTTCTCGCGCGATTTACTCC 58.725 50.000 34.86 0.00 0.00 3.85
4977 7120 0.526954 TTCTCGCGCGATTTACTCCC 60.527 55.000 34.86 0.00 0.00 4.30
4978 7121 1.065928 CTCGCGCGATTTACTCCCT 59.934 57.895 34.86 0.00 0.00 4.20
4979 7122 0.935366 CTCGCGCGATTTACTCCCTC 60.935 60.000 34.86 0.00 0.00 4.30
4980 7123 1.949631 CGCGCGATTTACTCCCTCC 60.950 63.158 28.94 0.00 0.00 4.30
4981 7124 1.949631 GCGCGATTTACTCCCTCCG 60.950 63.158 12.10 0.00 0.00 4.63
4982 7125 1.436336 CGCGATTTACTCCCTCCGT 59.564 57.895 0.00 0.00 0.00 4.69
4983 7126 0.179119 CGCGATTTACTCCCTCCGTT 60.179 55.000 0.00 0.00 0.00 4.44
4984 7127 1.568606 GCGATTTACTCCCTCCGTTC 58.431 55.000 0.00 0.00 0.00 3.95
4985 7128 1.805495 GCGATTTACTCCCTCCGTTCC 60.805 57.143 0.00 0.00 0.00 3.62
4986 7129 1.755380 CGATTTACTCCCTCCGTTCCT 59.245 52.381 0.00 0.00 0.00 3.36
4987 7130 2.954318 CGATTTACTCCCTCCGTTCCTA 59.046 50.000 0.00 0.00 0.00 2.94
4988 7131 3.382546 CGATTTACTCCCTCCGTTCCTAA 59.617 47.826 0.00 0.00 0.00 2.69
4989 7132 4.142093 CGATTTACTCCCTCCGTTCCTAAA 60.142 45.833 0.00 0.00 0.00 1.85
4990 7133 5.452917 CGATTTACTCCCTCCGTTCCTAAAT 60.453 44.000 0.00 0.00 0.00 1.40
4991 7134 6.239120 CGATTTACTCCCTCCGTTCCTAAATA 60.239 42.308 0.00 0.00 0.00 1.40
4992 7135 5.859205 TTACTCCCTCCGTTCCTAAATAC 57.141 43.478 0.00 0.00 0.00 1.89
4993 7136 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
4994 7137 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
4995 7138 5.522641 ACTCCCTCCGTTCCTAAATACTTA 58.477 41.667 0.00 0.00 0.00 2.24
4996 7139 6.141790 ACTCCCTCCGTTCCTAAATACTTAT 58.858 40.000 0.00 0.00 0.00 1.73
4997 7140 6.267242 ACTCCCTCCGTTCCTAAATACTTATC 59.733 42.308 0.00 0.00 0.00 1.75
4998 7141 6.379579 TCCCTCCGTTCCTAAATACTTATCT 58.620 40.000 0.00 0.00 0.00 1.98
4999 7142 6.842807 TCCCTCCGTTCCTAAATACTTATCTT 59.157 38.462 0.00 0.00 0.00 2.40
5000 7143 7.346436 TCCCTCCGTTCCTAAATACTTATCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5001 7144 7.656542 CCCTCCGTTCCTAAATACTTATCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
5002 7145 8.422566 CCTCCGTTCCTAAATACTTATCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
5005 7148 9.694137 CCGTTCCTAAATACTTATCTTTCTAGG 57.306 37.037 0.00 0.00 0.00 3.02
5006 7149 9.194271 CGTTCCTAAATACTTATCTTTCTAGGC 57.806 37.037 0.00 0.00 0.00 3.93
5021 7164 8.268850 TCTTTCTAGGCATTTCAATAAGTGAC 57.731 34.615 0.00 0.00 35.39 3.67
5022 7165 8.103305 TCTTTCTAGGCATTTCAATAAGTGACT 58.897 33.333 0.00 0.00 42.81 3.41
5023 7166 9.383519 CTTTCTAGGCATTTCAATAAGTGACTA 57.616 33.333 0.00 0.00 38.81 2.59
5024 7167 8.718102 TTCTAGGCATTTCAATAAGTGACTAC 57.282 34.615 0.00 0.00 38.81 2.73
5025 7168 7.847096 TCTAGGCATTTCAATAAGTGACTACA 58.153 34.615 0.00 0.00 38.81 2.74
5026 7169 8.486210 TCTAGGCATTTCAATAAGTGACTACAT 58.514 33.333 0.00 0.00 38.81 2.29
5027 7170 9.764363 CTAGGCATTTCAATAAGTGACTACATA 57.236 33.333 0.00 0.00 38.81 2.29
5028 7171 8.438676 AGGCATTTCAATAAGTGACTACATAC 57.561 34.615 0.00 0.00 38.81 2.39
5029 7172 7.224753 AGGCATTTCAATAAGTGACTACATACG 59.775 37.037 0.00 0.00 38.81 3.06
5030 7173 7.223971 GGCATTTCAATAAGTGACTACATACGA 59.776 37.037 0.00 0.00 35.39 3.43
5031 7174 8.600625 GCATTTCAATAAGTGACTACATACGAA 58.399 33.333 0.00 0.00 35.39 3.85
5033 7176 9.871238 ATTTCAATAAGTGACTACATACGAAGT 57.129 29.630 0.00 0.00 39.84 3.01
5052 7195 8.240883 ACGAAGTAAAATGAGTGAATCTACAC 57.759 34.615 0.00 0.00 41.94 2.90
5094 7237 9.977762 CATACATCCGTATGTGATATTCATTTG 57.022 33.333 3.56 0.00 46.70 2.32
5095 7238 9.942850 ATACATCCGTATGTGATATTCATTTGA 57.057 29.630 3.56 0.00 45.99 2.69
5096 7239 8.675705 ACATCCGTATGTGATATTCATTTGAA 57.324 30.769 0.00 0.00 44.79 2.69
5097 7240 9.119418 ACATCCGTATGTGATATTCATTTGAAA 57.881 29.630 0.00 0.00 44.79 2.69
5100 7243 8.075574 TCCGTATGTGATATTCATTTGAAATGC 58.924 33.333 12.86 0.00 37.61 3.56
5101 7244 7.326789 CCGTATGTGATATTCATTTGAAATGCC 59.673 37.037 12.86 1.28 37.61 4.40
5102 7245 8.077991 CGTATGTGATATTCATTTGAAATGCCT 58.922 33.333 12.86 5.36 37.61 4.75
5105 7248 8.750515 TGTGATATTCATTTGAAATGCCTAGA 57.249 30.769 12.86 0.00 37.61 2.43
5106 7249 9.187996 TGTGATATTCATTTGAAATGCCTAGAA 57.812 29.630 12.86 2.59 37.61 2.10
5112 7255 8.954950 TTCATTTGAAATGCCTAGAAAAACAA 57.045 26.923 12.86 0.00 0.00 2.83
5113 7256 8.592105 TCATTTGAAATGCCTAGAAAAACAAG 57.408 30.769 12.86 0.00 0.00 3.16
5114 7257 8.203485 TCATTTGAAATGCCTAGAAAAACAAGT 58.797 29.630 12.86 0.00 0.00 3.16
5115 7258 9.474920 CATTTGAAATGCCTAGAAAAACAAGTA 57.525 29.630 4.82 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.406648 TTCTCGAATACATGGTCAGCAT 57.593 40.909 0.00 0.00 0.00 3.79
49 50 3.885724 TTCTCGAATACATGGTCAGCA 57.114 42.857 0.00 0.00 0.00 4.41
50 51 4.572389 ACATTTCTCGAATACATGGTCAGC 59.428 41.667 0.00 0.00 0.00 4.26
51 52 6.668541 AACATTTCTCGAATACATGGTCAG 57.331 37.500 0.00 0.00 0.00 3.51
52 53 8.447833 GTTTAACATTTCTCGAATACATGGTCA 58.552 33.333 0.00 0.00 0.00 4.02
53 54 8.665685 AGTTTAACATTTCTCGAATACATGGTC 58.334 33.333 0.00 0.00 0.00 4.02
54 55 8.561738 AGTTTAACATTTCTCGAATACATGGT 57.438 30.769 0.00 0.00 0.00 3.55
266 331 9.872757 CAACAGTTTTTCTATACACGTTAACAT 57.127 29.630 6.39 0.00 0.00 2.71
267 332 9.096160 TCAACAGTTTTTCTATACACGTTAACA 57.904 29.630 6.39 0.00 0.00 2.41
268 333 9.361712 GTCAACAGTTTTTCTATACACGTTAAC 57.638 33.333 0.00 0.00 0.00 2.01
270 335 7.710044 TGGTCAACAGTTTTTCTATACACGTTA 59.290 33.333 0.00 0.00 0.00 3.18
301 366 9.474920 TTCAAATACAGGATCAACAATTTTGAC 57.525 29.630 0.00 2.17 32.21 3.18
363 428 8.385898 TCGGTTTTCACTGTTTTAGTATTCAT 57.614 30.769 0.00 0.00 37.60 2.57
370 435 5.983720 TCTCTCTCGGTTTTCACTGTTTTAG 59.016 40.000 0.00 0.00 0.00 1.85
371 436 5.909477 TCTCTCTCGGTTTTCACTGTTTTA 58.091 37.500 0.00 0.00 0.00 1.52
416 481 7.060383 TGGTTTTCATTGGCATTCTTTCTTA 57.940 32.000 0.00 0.00 0.00 2.10
440 506 7.378181 TCTTTTCTTTTCTTTGTGACTTGCTT 58.622 30.769 0.00 0.00 0.00 3.91
482 548 8.480643 TTGTTGTTTACATTGTTTTTACTGGG 57.519 30.769 0.00 0.00 36.44 4.45
545 611 1.078426 AGCCGATTTTCTCCACCGG 60.078 57.895 0.00 0.00 42.74 5.28
632 698 3.961408 GGTCTCCTGGATAGTTTCTAGCA 59.039 47.826 0.00 0.00 31.80 3.49
777 891 0.955428 GCATCAAGCGAGTTGGGTCA 60.955 55.000 0.00 0.00 36.71 4.02
796 910 1.891178 TTCGCGGCGATTATATCTCG 58.109 50.000 26.95 0.30 35.23 4.04
799 913 3.366724 TGTCATTTCGCGGCGATTATATC 59.633 43.478 26.95 16.51 35.23 1.63
800 914 3.322369 TGTCATTTCGCGGCGATTATAT 58.678 40.909 26.95 13.89 35.23 0.86
801 915 2.745102 TGTCATTTCGCGGCGATTATA 58.255 42.857 26.95 8.31 35.23 0.98
802 916 1.577468 TGTCATTTCGCGGCGATTAT 58.423 45.000 26.95 18.77 35.23 1.28
803 917 1.360820 TTGTCATTTCGCGGCGATTA 58.639 45.000 26.95 17.30 35.23 1.75
804 918 0.519519 TTTGTCATTTCGCGGCGATT 59.480 45.000 26.95 14.02 35.23 3.34
817 931 0.109532 TCGAACATGGCCCTTTGTCA 59.890 50.000 0.00 0.00 0.00 3.58
843 958 1.558167 TTATCAGGCCAGCCCGTGAA 61.558 55.000 5.01 0.00 39.21 3.18
938 1053 1.461655 GGTAGGGGGCCTAAGGAGG 60.462 68.421 0.84 0.00 46.93 4.30
939 1054 1.837499 CGGTAGGGGGCCTAAGGAG 60.837 68.421 0.84 0.00 37.91 3.69
940 1055 2.284493 CGGTAGGGGGCCTAAGGA 59.716 66.667 0.84 0.00 37.91 3.36
1099 1214 0.673644 ACCGACAAAGGCATCTTCCG 60.674 55.000 0.00 0.00 31.82 4.30
1110 1225 4.912485 TTCCGCGCCACCGACAAA 62.912 61.111 0.00 0.00 36.29 2.83
1179 1294 1.704070 GCGAGAAGACGAAGCTCTTT 58.296 50.000 0.00 0.00 35.09 2.52
1266 1381 1.376466 GACCTTGAGCTTGAGGGCA 59.624 57.895 15.35 0.00 40.98 5.36
1450 1565 2.932614 CGAGAGGATCAAGAAATGCGTT 59.067 45.455 0.00 0.00 37.82 4.84
1685 1800 3.548014 CGTGATTCCACAACAAAGGTGAC 60.548 47.826 0.00 0.00 43.34 3.67
1946 2061 0.679505 CCGGAAATCGATAGCCTCCA 59.320 55.000 0.00 0.00 42.43 3.86
2141 2256 9.683069 CAAATTTGTATTAAGCTCAAGACACTT 57.317 29.630 10.15 0.00 29.84 3.16
2142 2257 8.850156 ACAAATTTGTATTAAGCTCAAGACACT 58.150 29.630 22.10 0.00 40.16 3.55
2151 2266 9.892130 AGCTCTAGTACAAATTTGTATTAAGCT 57.108 29.630 31.75 31.75 44.59 3.74
2170 2285 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
2171 2286 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
2173 2288 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
2175 2290 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
2178 2293 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2181 2296 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2182 2297 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2183 2298 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2185 2300 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2186 2301 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2187 2302 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2188 2303 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2189 2304 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2190 2305 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2191 2306 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2192 2307 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2193 2308 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2194 2309 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2195 2310 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2196 2311 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2197 2312 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2201 2316 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2348 2465 4.223144 ACTATGAAACTGTTGGGGCTTTT 58.777 39.130 0.00 0.00 0.00 2.27
2378 2691 8.233349 AGGGAGTACTTCCTGTATGATAGATA 57.767 38.462 22.87 0.00 45.98 1.98
2421 2734 7.553881 TTGACTTAGGACAAAGCTAATATGC 57.446 36.000 0.00 0.00 0.00 3.14
2577 2890 1.839424 ACTCCACCCATTAGCTTTGC 58.161 50.000 0.00 0.00 0.00 3.68
2629 2942 6.808212 CACAAGTTGAATTTCCCACATATCAC 59.192 38.462 10.54 0.00 0.00 3.06
2639 2952 5.108517 TGCTCAAACACAAGTTGAATTTCC 58.891 37.500 10.54 1.93 38.17 3.13
2697 3010 4.026062 GCTTAAAAGGGTTGCAAGTTTTCG 60.026 41.667 14.31 9.95 0.00 3.46
2715 3028 6.071560 CGGGGTACATACTATGATCTGCTTAA 60.072 42.308 2.90 0.00 0.00 1.85
2728 3041 3.109151 TGAAATGGACGGGGTACATACT 58.891 45.455 0.00 0.00 35.85 2.12
2827 3445 9.874215 GTACTCCAAAGTAATTAGTTGTGTTTC 57.126 33.333 6.31 0.00 39.66 2.78
2896 3514 3.140707 TGGACATGGAAGATGGGCATATT 59.859 43.478 0.00 0.00 0.00 1.28
2907 3525 2.862541 TGGTTTCAGTGGACATGGAAG 58.137 47.619 0.00 0.00 0.00 3.46
2965 3583 6.540438 AACATCTTGAAATCTGCATTCCAT 57.460 33.333 0.00 0.00 0.00 3.41
3022 3647 7.988737 TCAACTGCAATAACTAGATTCATTGG 58.011 34.615 0.00 0.00 0.00 3.16
3077 3702 5.888691 TCAAAGTAACAAACAACTGAGCA 57.111 34.783 0.00 0.00 0.00 4.26
3175 3800 5.827797 GGCACATTGTAAGGAATATGAGGAA 59.172 40.000 0.00 0.00 0.00 3.36
3177 3802 4.520492 GGGCACATTGTAAGGAATATGAGG 59.480 45.833 0.00 0.00 0.00 3.86
3222 3847 3.077484 ACTGTCAGATTGTCCAATGGG 57.923 47.619 6.91 0.00 0.00 4.00
3544 4170 7.981225 GGACATGGCATTTAAATTGTCACTATT 59.019 33.333 22.83 3.21 36.16 1.73
3545 4171 7.342799 AGGACATGGCATTTAAATTGTCACTAT 59.657 33.333 22.83 10.01 36.16 2.12
3546 4172 6.663093 AGGACATGGCATTTAAATTGTCACTA 59.337 34.615 22.83 3.13 36.16 2.74
3547 4173 5.481473 AGGACATGGCATTTAAATTGTCACT 59.519 36.000 22.83 17.01 36.16 3.41
3553 4179 7.334921 CACAAATCAGGACATGGCATTTAAATT 59.665 33.333 0.00 0.00 0.00 1.82
3656 4352 5.676552 TGAGAAACAGTAGCTTTGGTTGTA 58.323 37.500 5.99 0.00 0.00 2.41
3657 4353 4.523083 TGAGAAACAGTAGCTTTGGTTGT 58.477 39.130 5.99 2.43 0.00 3.32
3658 4354 5.499139 TTGAGAAACAGTAGCTTTGGTTG 57.501 39.130 5.99 0.00 0.00 3.77
3659 4355 6.715347 ATTTGAGAAACAGTAGCTTTGGTT 57.285 33.333 0.00 0.00 0.00 3.67
3660 4356 6.547510 AGAATTTGAGAAACAGTAGCTTTGGT 59.452 34.615 0.00 0.00 0.00 3.67
3661 4357 6.860023 CAGAATTTGAGAAACAGTAGCTTTGG 59.140 38.462 0.00 0.00 0.00 3.28
3662 4358 7.420800 ACAGAATTTGAGAAACAGTAGCTTTG 58.579 34.615 0.00 0.00 0.00 2.77
3663 4359 7.500559 AGACAGAATTTGAGAAACAGTAGCTTT 59.499 33.333 0.00 0.00 0.00 3.51
3664 4360 6.995091 AGACAGAATTTGAGAAACAGTAGCTT 59.005 34.615 0.00 0.00 0.00 3.74
3665 4361 6.529220 AGACAGAATTTGAGAAACAGTAGCT 58.471 36.000 0.00 0.00 0.00 3.32
3666 4362 6.793492 AGACAGAATTTGAGAAACAGTAGC 57.207 37.500 0.00 0.00 0.00 3.58
3672 4368 9.928236 GCTCATTATAGACAGAATTTGAGAAAC 57.072 33.333 0.00 0.00 32.96 2.78
3673 4369 9.113838 GGCTCATTATAGACAGAATTTGAGAAA 57.886 33.333 0.00 0.00 32.96 2.52
3674 4370 7.716998 GGGCTCATTATAGACAGAATTTGAGAA 59.283 37.037 0.00 0.00 32.96 2.87
3675 4371 7.220030 GGGCTCATTATAGACAGAATTTGAGA 58.780 38.462 0.00 0.00 32.96 3.27
3676 4372 6.429385 GGGGCTCATTATAGACAGAATTTGAG 59.571 42.308 0.00 0.00 34.04 3.02
3677 4373 6.299141 GGGGCTCATTATAGACAGAATTTGA 58.701 40.000 0.00 0.00 0.00 2.69
3678 4374 5.474876 GGGGGCTCATTATAGACAGAATTTG 59.525 44.000 0.00 0.00 0.00 2.32
3679 4375 5.373854 AGGGGGCTCATTATAGACAGAATTT 59.626 40.000 0.00 0.00 0.00 1.82
3680 4376 4.916424 AGGGGGCTCATTATAGACAGAATT 59.084 41.667 0.00 0.00 0.00 2.17
3681 4377 4.507342 AGGGGGCTCATTATAGACAGAAT 58.493 43.478 0.00 0.00 0.00 2.40
3682 4378 3.941629 AGGGGGCTCATTATAGACAGAA 58.058 45.455 0.00 0.00 0.00 3.02
3683 4379 3.637821 AGGGGGCTCATTATAGACAGA 57.362 47.619 0.00 0.00 0.00 3.41
3684 4380 4.141390 ACAAAGGGGGCTCATTATAGACAG 60.141 45.833 0.00 0.00 0.00 3.51
3685 4381 3.785887 ACAAAGGGGGCTCATTATAGACA 59.214 43.478 0.00 0.00 0.00 3.41
3686 4382 4.439253 ACAAAGGGGGCTCATTATAGAC 57.561 45.455 0.00 0.00 0.00 2.59
3687 4383 5.200483 CAAACAAAGGGGGCTCATTATAGA 58.800 41.667 0.00 0.00 0.00 1.98
3688 4384 4.202151 GCAAACAAAGGGGGCTCATTATAG 60.202 45.833 0.00 0.00 0.00 1.31
3689 4385 3.704061 GCAAACAAAGGGGGCTCATTATA 59.296 43.478 0.00 0.00 0.00 0.98
3690 4386 2.501316 GCAAACAAAGGGGGCTCATTAT 59.499 45.455 0.00 0.00 0.00 1.28
3691 4387 1.899142 GCAAACAAAGGGGGCTCATTA 59.101 47.619 0.00 0.00 0.00 1.90
3692 4388 0.686789 GCAAACAAAGGGGGCTCATT 59.313 50.000 0.00 0.00 0.00 2.57
3693 4389 0.178924 AGCAAACAAAGGGGGCTCAT 60.179 50.000 0.00 0.00 0.00 2.90
3694 4390 0.398381 AAGCAAACAAAGGGGGCTCA 60.398 50.000 0.00 0.00 32.84 4.26
3695 4391 0.033920 CAAGCAAACAAAGGGGGCTC 59.966 55.000 0.00 0.00 32.84 4.70
3696 4392 0.690744 ACAAGCAAACAAAGGGGGCT 60.691 50.000 0.00 0.00 36.13 5.19
3697 4393 0.249868 GACAAGCAAACAAAGGGGGC 60.250 55.000 0.00 0.00 0.00 5.80
3698 4394 0.392706 GGACAAGCAAACAAAGGGGG 59.607 55.000 0.00 0.00 0.00 5.40
3699 4395 1.118838 TGGACAAGCAAACAAAGGGG 58.881 50.000 0.00 0.00 0.00 4.79
3700 4396 3.132925 CAATGGACAAGCAAACAAAGGG 58.867 45.455 0.00 0.00 0.00 3.95
3701 4397 2.545106 GCAATGGACAAGCAAACAAAGG 59.455 45.455 0.00 0.00 0.00 3.11
3702 4398 3.196463 TGCAATGGACAAGCAAACAAAG 58.804 40.909 1.12 0.00 34.97 2.77
3703 4399 3.257469 TGCAATGGACAAGCAAACAAA 57.743 38.095 1.12 0.00 34.97 2.83
3704 4400 2.975732 TGCAATGGACAAGCAAACAA 57.024 40.000 1.12 0.00 34.97 2.83
3705 4401 2.429971 TCTTGCAATGGACAAGCAAACA 59.570 40.909 0.00 4.50 46.30 2.83
3706 4402 3.054878 CTCTTGCAATGGACAAGCAAAC 58.945 45.455 0.00 0.00 46.30 2.93
3707 4403 2.546373 GCTCTTGCAATGGACAAGCAAA 60.546 45.455 0.00 7.02 46.30 3.68
3708 4404 1.000060 GCTCTTGCAATGGACAAGCAA 60.000 47.619 0.00 12.70 45.07 3.91
3709 4405 0.599558 GCTCTTGCAATGGACAAGCA 59.400 50.000 0.00 0.00 43.40 3.91
3710 4406 0.886563 AGCTCTTGCAATGGACAAGC 59.113 50.000 0.00 2.98 43.40 4.01
3711 4407 1.201647 CCAGCTCTTGCAATGGACAAG 59.798 52.381 10.73 0.00 44.76 3.16
3712 4408 1.202915 TCCAGCTCTTGCAATGGACAA 60.203 47.619 14.20 0.00 38.23 3.18
3713 4409 0.401356 TCCAGCTCTTGCAATGGACA 59.599 50.000 14.20 0.00 38.23 4.02
3714 4410 1.760192 ATCCAGCTCTTGCAATGGAC 58.240 50.000 19.24 1.72 43.36 4.02
3715 4411 3.483421 CATATCCAGCTCTTGCAATGGA 58.517 45.455 19.16 19.16 44.24 3.41
3716 4412 2.557056 CCATATCCAGCTCTTGCAATGG 59.443 50.000 10.06 10.06 42.74 3.16
3717 4413 3.483421 TCCATATCCAGCTCTTGCAATG 58.517 45.455 0.00 0.00 42.74 2.82
3718 4414 3.870538 TCCATATCCAGCTCTTGCAAT 57.129 42.857 0.00 0.00 42.74 3.56
3719 4415 3.136992 TGATCCATATCCAGCTCTTGCAA 59.863 43.478 0.00 0.00 42.74 4.08
3720 4416 2.707257 TGATCCATATCCAGCTCTTGCA 59.293 45.455 0.00 0.00 42.74 4.08
3721 4417 3.007723 TCTGATCCATATCCAGCTCTTGC 59.992 47.826 0.00 0.00 40.05 4.01
3722 4418 4.886496 TCTGATCCATATCCAGCTCTTG 57.114 45.455 0.00 0.00 0.00 3.02
3723 4419 5.369110 ACTTTCTGATCCATATCCAGCTCTT 59.631 40.000 0.00 0.00 0.00 2.85
3724 4420 4.906664 ACTTTCTGATCCATATCCAGCTCT 59.093 41.667 0.00 0.00 0.00 4.09
3948 5369 7.280428 AGTGACATGTGATTTGCATTTCAAAAA 59.720 29.630 1.15 0.00 46.60 1.94
3997 5418 9.295825 TCACATCTTTTCCAACTGTATAACATT 57.704 29.630 0.00 0.00 0.00 2.71
4079 5503 2.134933 GTCCTCCTCCGTCCCATCC 61.135 68.421 0.00 0.00 0.00 3.51
4128 5552 0.321021 CTGCTCAGCACCTCTCAAGT 59.679 55.000 0.00 0.00 33.79 3.16
4185 5612 8.941977 ACTAAACTCATATAATGTTGTCGCAAA 58.058 29.630 0.00 0.00 0.00 3.68
4404 5850 7.267128 TCCATGAAAATAATTCACAATCCAGC 58.733 34.615 0.00 0.00 0.00 4.85
4405 5851 9.090692 GTTCCATGAAAATAATTCACAATCCAG 57.909 33.333 0.00 0.00 0.00 3.86
4432 5878 5.710099 TCCAAAAGTGAAATATCTGGGTCAC 59.290 40.000 0.00 0.00 40.56 3.67
4478 5924 2.027561 CACGTCAAATTCCCAGGTCCTA 60.028 50.000 0.00 0.00 0.00 2.94
4487 5933 3.366985 GGTTGGGAATCACGTCAAATTCC 60.367 47.826 18.97 18.97 46.80 3.01
4488 5934 3.254657 TGGTTGGGAATCACGTCAAATTC 59.745 43.478 6.37 6.37 0.00 2.17
4540 6141 2.259266 TCATCTGCTGCACAAGAACA 57.741 45.000 0.00 0.00 0.00 3.18
4557 6684 5.924254 CAGCAATTTCTGAATTTCTGCTTCA 59.076 36.000 0.00 0.00 38.83 3.02
4580 6707 0.179032 ATTTCAGTGTCACCGGCACA 60.179 50.000 12.43 7.99 39.17 4.57
4581 6708 0.517316 GATTTCAGTGTCACCGGCAC 59.483 55.000 0.00 1.00 37.13 5.01
4604 6731 1.275291 AGAAAATTCGTCCCAGCGAGA 59.725 47.619 0.00 0.00 42.10 4.04
4615 6742 3.482786 CAAGGCAGAACGAGAAAATTCG 58.517 45.455 0.00 0.00 45.70 3.34
4618 6745 2.485814 GAGCAAGGCAGAACGAGAAAAT 59.514 45.455 0.00 0.00 0.00 1.82
4625 6752 1.018226 CCAGAGAGCAAGGCAGAACG 61.018 60.000 0.00 0.00 0.00 3.95
4661 6788 3.417069 TTTGACATCGAAGACCATGGT 57.583 42.857 19.89 19.89 42.51 3.55
4665 6792 4.545610 GCAAATTTTGACATCGAAGACCA 58.454 39.130 13.26 0.00 42.51 4.02
4672 6807 1.984990 CCACGGCAAATTTTGACATCG 59.015 47.619 15.07 12.42 39.16 3.84
4674 6809 2.102252 ACACCACGGCAAATTTTGACAT 59.898 40.909 15.07 0.00 39.16 3.06
4677 6812 5.163602 GGATATACACCACGGCAAATTTTGA 60.164 40.000 13.26 0.00 0.00 2.69
4681 6816 3.882888 CAGGATATACACCACGGCAAATT 59.117 43.478 0.00 0.00 0.00 1.82
4682 6817 3.118038 ACAGGATATACACCACGGCAAAT 60.118 43.478 0.00 0.00 0.00 2.32
4698 6833 4.081406 TGCTGCTTTCAAATGTACAGGAT 58.919 39.130 0.33 0.00 0.00 3.24
4701 6836 3.671928 GCTTGCTGCTTTCAAATGTACAG 59.328 43.478 0.33 0.00 38.95 2.74
4702 6837 3.067883 TGCTTGCTGCTTTCAAATGTACA 59.932 39.130 0.00 0.00 43.37 2.90
4703 6838 3.641648 TGCTTGCTGCTTTCAAATGTAC 58.358 40.909 0.00 0.00 43.37 2.90
4712 6849 0.528249 CCAACGTTGCTTGCTGCTTT 60.528 50.000 22.93 0.00 43.37 3.51
4762 6900 4.393371 GGGAAAGATTACACTGACAAGCTC 59.607 45.833 0.00 0.00 0.00 4.09
4766 6904 7.016153 ACTATGGGAAAGATTACACTGACAA 57.984 36.000 0.00 0.00 0.00 3.18
4768 6906 5.749109 CGACTATGGGAAAGATTACACTGAC 59.251 44.000 0.00 0.00 0.00 3.51
4769 6907 5.681437 GCGACTATGGGAAAGATTACACTGA 60.681 44.000 0.00 0.00 0.00 3.41
4770 6908 4.508124 GCGACTATGGGAAAGATTACACTG 59.492 45.833 0.00 0.00 0.00 3.66
4781 6924 1.461091 CGGCCTAGCGACTATGGGAA 61.461 60.000 0.00 0.00 0.00 3.97
4884 7027 1.869767 CTCTCGGCCTAAATCATGCAC 59.130 52.381 0.00 0.00 0.00 4.57
4927 7070 3.884774 TGTTTCACTGCCCCCGCT 61.885 61.111 0.00 0.00 35.36 5.52
4947 7090 4.431894 TCGCGCGAGAAAAGTTATTATG 57.568 40.909 31.40 0.00 0.00 1.90
4973 7116 6.494146 AGATAAGTATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4974 7117 6.379579 AGATAAGTATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4975 7118 6.667558 AGATAAGTATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4976 7119 8.422566 AGAAAGATAAGTATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
4979 7122 9.694137 CCTAGAAAGATAAGTATTTAGGAACGG 57.306 37.037 0.00 0.00 0.00 4.44
4980 7123 9.194271 GCCTAGAAAGATAAGTATTTAGGAACG 57.806 37.037 0.00 0.00 0.00 3.95
4995 7138 8.897752 GTCACTTATTGAAATGCCTAGAAAGAT 58.102 33.333 0.00 0.00 35.39 2.40
4996 7139 8.103305 AGTCACTTATTGAAATGCCTAGAAAGA 58.897 33.333 0.00 0.00 35.39 2.52
4997 7140 8.273780 AGTCACTTATTGAAATGCCTAGAAAG 57.726 34.615 0.00 0.00 35.39 2.62
4998 7141 9.162764 GTAGTCACTTATTGAAATGCCTAGAAA 57.837 33.333 0.00 0.00 35.39 2.52
4999 7142 8.318412 TGTAGTCACTTATTGAAATGCCTAGAA 58.682 33.333 0.00 0.00 35.39 2.10
5000 7143 7.847096 TGTAGTCACTTATTGAAATGCCTAGA 58.153 34.615 0.00 0.00 35.39 2.43
5001 7144 8.668510 ATGTAGTCACTTATTGAAATGCCTAG 57.331 34.615 0.00 0.00 35.39 3.02
5002 7145 9.542462 GTATGTAGTCACTTATTGAAATGCCTA 57.458 33.333 0.00 0.00 35.39 3.93
5003 7146 7.224753 CGTATGTAGTCACTTATTGAAATGCCT 59.775 37.037 0.00 0.00 35.39 4.75
5004 7147 7.223971 TCGTATGTAGTCACTTATTGAAATGCC 59.776 37.037 0.00 0.00 35.39 4.40
5005 7148 8.126871 TCGTATGTAGTCACTTATTGAAATGC 57.873 34.615 0.00 0.00 35.39 3.56
5007 7150 9.871238 ACTTCGTATGTAGTCACTTATTGAAAT 57.129 29.630 0.00 0.00 35.39 2.17
5015 7158 9.355215 CTCATTTTACTTCGTATGTAGTCACTT 57.645 33.333 0.00 0.00 0.00 3.16
5016 7159 8.521176 ACTCATTTTACTTCGTATGTAGTCACT 58.479 33.333 0.00 0.00 0.00 3.41
5017 7160 8.584600 CACTCATTTTACTTCGTATGTAGTCAC 58.415 37.037 0.00 0.00 0.00 3.67
5018 7161 8.517056 TCACTCATTTTACTTCGTATGTAGTCA 58.483 33.333 0.00 0.00 0.00 3.41
5019 7162 8.906636 TCACTCATTTTACTTCGTATGTAGTC 57.093 34.615 0.00 0.00 0.00 2.59
5020 7163 9.871238 ATTCACTCATTTTACTTCGTATGTAGT 57.129 29.630 0.00 0.00 0.00 2.73
5026 7169 9.350357 GTGTAGATTCACTCATTTTACTTCGTA 57.650 33.333 0.00 0.00 35.68 3.43
5027 7170 8.088981 AGTGTAGATTCACTCATTTTACTTCGT 58.911 33.333 0.00 0.00 44.07 3.85
5028 7171 8.467402 AGTGTAGATTCACTCATTTTACTTCG 57.533 34.615 0.00 0.00 44.07 3.79
5069 7212 9.942850 TCAAATGAATATCACATACGGATGTAT 57.057 29.630 14.23 10.02 44.82 2.29
5070 7213 9.771534 TTCAAATGAATATCACATACGGATGTA 57.228 29.630 14.23 0.00 44.82 2.29
5071 7214 9.119418 TTTCAAATGAATATCACATACGGATGT 57.881 29.630 7.68 7.68 39.20 3.06
5074 7217 8.075574 GCATTTCAAATGAATATCACATACGGA 58.924 33.333 14.65 0.00 33.54 4.69
5075 7218 7.326789 GGCATTTCAAATGAATATCACATACGG 59.673 37.037 14.65 0.00 33.54 4.02
5076 7219 8.077991 AGGCATTTCAAATGAATATCACATACG 58.922 33.333 14.65 0.00 33.54 3.06
5079 7222 9.358406 TCTAGGCATTTCAAATGAATATCACAT 57.642 29.630 14.65 0.00 33.54 3.21
5080 7223 8.750515 TCTAGGCATTTCAAATGAATATCACA 57.249 30.769 14.65 0.00 33.54 3.58
5086 7229 9.558396 TTGTTTTTCTAGGCATTTCAAATGAAT 57.442 25.926 14.65 3.70 33.54 2.57
5087 7230 8.954950 TTGTTTTTCTAGGCATTTCAAATGAA 57.045 26.923 14.65 0.00 0.00 2.57
5088 7231 8.203485 ACTTGTTTTTCTAGGCATTTCAAATGA 58.797 29.630 14.65 0.00 0.00 2.57
5089 7232 8.369218 ACTTGTTTTTCTAGGCATTTCAAATG 57.631 30.769 5.68 5.68 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.