Multiple sequence alignment - TraesCS4D01G168800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G168800 chr4D 100.000 2170 0 0 567 2736 293666107 293663938 0.000000e+00 4008
1 TraesCS4D01G168800 chr4D 93.017 759 42 6 1985 2736 442252092 442252846 0.000000e+00 1098
2 TraesCS4D01G168800 chr4D 100.000 180 0 0 1 180 293666673 293666494 1.570000e-87 333
3 TraesCS4D01G168800 chr4D 89.385 179 16 1 2 177 85584451 85584629 3.550000e-54 222
4 TraesCS4D01G168800 chr4B 92.941 850 32 13 932 1777 290913854 290913029 0.000000e+00 1212
5 TraesCS4D01G168800 chr4B 82.432 370 41 10 567 930 212504135 212504486 4.430000e-78 302
6 TraesCS4D01G168800 chr4B 90.000 230 8 6 1776 1991 290912989 290912761 1.600000e-72 283
7 TraesCS4D01G168800 chr1D 93.775 755 43 4 1984 2736 387956370 387955618 0.000000e+00 1131
8 TraesCS4D01G168800 chr1D 88.333 180 17 2 1 177 335362504 335362326 2.130000e-51 213
9 TraesCS4D01G168800 chr3D 93.493 753 46 3 1985 2736 101685359 101686109 0.000000e+00 1116
10 TraesCS4D01G168800 chr3D 87.778 180 19 2 1 177 566627208 566627387 9.930000e-50 207
11 TraesCS4D01G168800 chr2D 93.227 753 48 3 1985 2736 560744363 560745113 0.000000e+00 1105
12 TraesCS4D01G168800 chr2D 93.026 760 42 5 1985 2736 111146339 111145583 0.000000e+00 1099
13 TraesCS4D01G168800 chr2D 86.283 226 21 9 1328 1547 62069167 62069388 1.270000e-58 237
14 TraesCS4D01G168800 chr2D 86.111 180 18 4 1 177 248470528 248470703 1.290000e-43 187
15 TraesCS4D01G168800 chr5D 93.200 750 48 3 1988 2736 442185874 442185127 0.000000e+00 1099
16 TraesCS4D01G168800 chr5D 92.923 763 40 6 1985 2736 174315337 174314578 0.000000e+00 1098
17 TraesCS4D01G168800 chr7A 92.904 761 43 7 1985 2736 385566852 385566094 0.000000e+00 1096
18 TraesCS4D01G168800 chr7A 84.302 172 21 4 608 779 428403987 428404152 2.180000e-36 163
19 TraesCS4D01G168800 chr5A 92.895 760 44 5 1985 2736 602262372 602263129 0.000000e+00 1096
20 TraesCS4D01G168800 chr7B 81.525 341 37 15 608 930 6791792 6791460 9.720000e-65 257
21 TraesCS4D01G168800 chr7B 81.443 194 29 7 607 798 541173657 541173845 4.720000e-33 152
22 TraesCS4D01G168800 chr2A 87.745 204 21 4 1328 1529 62397778 62397979 4.550000e-58 235
23 TraesCS4D01G168800 chr2A 77.809 356 61 13 594 936 104388714 104388364 1.280000e-48 204
24 TraesCS4D01G168800 chr2B 84.211 247 27 10 1287 1529 97441634 97441872 2.120000e-56 230
25 TraesCS4D01G168800 chr2B 85.792 183 22 3 1 180 196197928 196197747 1.000000e-44 191
26 TraesCS4D01G168800 chr6A 90.184 163 14 1 17 177 129750232 129750070 7.680000e-51 211
27 TraesCS4D01G168800 chr7D 87.363 182 20 1 2 180 573437877 573437696 3.570000e-49 206
28 TraesCS4D01G168800 chr7D 86.111 180 22 1 1 177 581282688 581282867 1.000000e-44 191
29 TraesCS4D01G168800 chr6B 87.079 178 17 3 3 177 705501670 705501844 2.150000e-46 196
30 TraesCS4D01G168800 chr3B 83.333 204 24 8 567 764 648733884 648734083 2.160000e-41 180
31 TraesCS4D01G168800 chr3B 81.771 192 26 8 590 779 2175175 2175359 4.720000e-33 152
32 TraesCS4D01G168800 chr3B 82.222 180 29 3 601 779 416265397 416265220 4.720000e-33 152
33 TraesCS4D01G168800 chr5B 82.297 209 30 7 573 779 612031362 612031159 1.010000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G168800 chr4D 293663938 293666673 2735 True 2170.5 4008 100.0000 1 2736 2 chr4D.!!$R1 2735
1 TraesCS4D01G168800 chr4D 442252092 442252846 754 False 1098.0 1098 93.0170 1985 2736 1 chr4D.!!$F2 751
2 TraesCS4D01G168800 chr4B 290912761 290913854 1093 True 747.5 1212 91.4705 932 1991 2 chr4B.!!$R1 1059
3 TraesCS4D01G168800 chr1D 387955618 387956370 752 True 1131.0 1131 93.7750 1984 2736 1 chr1D.!!$R2 752
4 TraesCS4D01G168800 chr3D 101685359 101686109 750 False 1116.0 1116 93.4930 1985 2736 1 chr3D.!!$F1 751
5 TraesCS4D01G168800 chr2D 560744363 560745113 750 False 1105.0 1105 93.2270 1985 2736 1 chr2D.!!$F3 751
6 TraesCS4D01G168800 chr2D 111145583 111146339 756 True 1099.0 1099 93.0260 1985 2736 1 chr2D.!!$R1 751
7 TraesCS4D01G168800 chr5D 442185127 442185874 747 True 1099.0 1099 93.2000 1988 2736 1 chr5D.!!$R2 748
8 TraesCS4D01G168800 chr5D 174314578 174315337 759 True 1098.0 1098 92.9230 1985 2736 1 chr5D.!!$R1 751
9 TraesCS4D01G168800 chr7A 385566094 385566852 758 True 1096.0 1096 92.9040 1985 2736 1 chr7A.!!$R1 751
10 TraesCS4D01G168800 chr5A 602262372 602263129 757 False 1096.0 1096 92.8950 1985 2736 1 chr5A.!!$F1 751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 678 0.038159 GGCGGCATAGTAGTGCTAGG 60.038 60.0 3.07 0.0 44.45 3.02 F
1193 1197 0.034186 AACATCCATGACCGCCACAT 60.034 50.0 0.00 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1680 1684 0.678395 ATCAAGCGATCGAGCAGGAT 59.322 50.0 21.57 10.47 40.15 3.24 R
2021 2077 1.133363 TGGGACGAAAAAGACCCTGA 58.867 50.0 0.00 0.00 44.60 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.408853 GGCCGCCCCTTACCTTCT 61.409 66.667 0.00 0.00 0.00 2.85
18 19 2.675371 GCCGCCCCTTACCTTCTT 59.325 61.111 0.00 0.00 0.00 2.52
19 20 1.451567 GCCGCCCCTTACCTTCTTC 60.452 63.158 0.00 0.00 0.00 2.87
20 21 1.911702 GCCGCCCCTTACCTTCTTCT 61.912 60.000 0.00 0.00 0.00 2.85
21 22 0.618981 CCGCCCCTTACCTTCTTCTT 59.381 55.000 0.00 0.00 0.00 2.52
22 23 1.407025 CCGCCCCTTACCTTCTTCTTC 60.407 57.143 0.00 0.00 0.00 2.87
23 24 1.407025 CGCCCCTTACCTTCTTCTTCC 60.407 57.143 0.00 0.00 0.00 3.46
24 25 1.064611 GCCCCTTACCTTCTTCTTCCC 60.065 57.143 0.00 0.00 0.00 3.97
25 26 1.209747 CCCCTTACCTTCTTCTTCCCG 59.790 57.143 0.00 0.00 0.00 5.14
26 27 1.209747 CCCTTACCTTCTTCTTCCCGG 59.790 57.143 0.00 0.00 0.00 5.73
27 28 1.407025 CCTTACCTTCTTCTTCCCGGC 60.407 57.143 0.00 0.00 0.00 6.13
28 29 1.555533 CTTACCTTCTTCTTCCCGGCT 59.444 52.381 0.00 0.00 0.00 5.52
29 30 1.192428 TACCTTCTTCTTCCCGGCTC 58.808 55.000 0.00 0.00 0.00 4.70
30 31 1.153549 CCTTCTTCTTCCCGGCTCG 60.154 63.158 0.00 0.00 0.00 5.03
31 32 1.592223 CTTCTTCTTCCCGGCTCGT 59.408 57.895 0.00 0.00 0.00 4.18
32 33 0.458716 CTTCTTCTTCCCGGCTCGTC 60.459 60.000 0.00 0.00 0.00 4.20
33 34 1.183030 TTCTTCTTCCCGGCTCGTCA 61.183 55.000 0.00 0.00 0.00 4.35
34 35 1.153745 CTTCTTCCCGGCTCGTCAG 60.154 63.158 0.00 0.00 0.00 3.51
35 36 2.564553 CTTCTTCCCGGCTCGTCAGG 62.565 65.000 0.00 0.00 0.00 3.86
36 37 4.821589 CTTCCCGGCTCGTCAGGC 62.822 72.222 0.00 0.00 41.98 4.85
42 43 3.760035 GGCTCGTCAGGCCGAAGA 61.760 66.667 11.28 11.28 40.19 2.87
43 44 2.507324 GCTCGTCAGGCCGAAGAC 60.507 66.667 13.86 13.86 36.24 3.01
44 45 2.182030 CTCGTCAGGCCGAAGACC 59.818 66.667 16.84 3.93 36.24 3.85
45 46 3.685214 CTCGTCAGGCCGAAGACCG 62.685 68.421 16.84 12.91 36.24 4.79
46 47 3.744719 CGTCAGGCCGAAGACCGA 61.745 66.667 16.84 0.00 41.76 4.69
47 48 2.182030 GTCAGGCCGAAGACCGAG 59.818 66.667 13.12 0.00 41.76 4.63
48 49 3.760035 TCAGGCCGAAGACCGAGC 61.760 66.667 0.00 0.00 41.76 5.03
69 70 2.359975 GGTTGCTCCCCGTGAAGG 60.360 66.667 0.00 0.00 40.63 3.46
70 71 2.747686 GTTGCTCCCCGTGAAGGA 59.252 61.111 0.00 0.00 45.00 3.36
74 75 2.266055 CTCCCCGTGAAGGAGCAC 59.734 66.667 0.00 0.00 44.30 4.40
80 81 3.112709 GTGAAGGAGCACGCGGAC 61.113 66.667 12.47 0.68 0.00 4.79
81 82 3.611674 TGAAGGAGCACGCGGACA 61.612 61.111 12.47 0.00 0.00 4.02
82 83 2.125512 GAAGGAGCACGCGGACAT 60.126 61.111 12.47 0.00 0.00 3.06
83 84 2.434884 AAGGAGCACGCGGACATG 60.435 61.111 12.47 0.00 0.00 3.21
84 85 2.835701 GAAGGAGCACGCGGACATGA 62.836 60.000 12.47 0.00 0.00 3.07
85 86 3.188786 GGAGCACGCGGACATGAC 61.189 66.667 12.47 0.00 0.00 3.06
86 87 3.188786 GAGCACGCGGACATGACC 61.189 66.667 12.47 0.58 0.00 4.02
94 95 4.124351 GGACATGACCGCCGACGA 62.124 66.667 0.00 0.00 43.93 4.20
95 96 2.104331 GACATGACCGCCGACGAT 59.896 61.111 0.00 0.00 43.93 3.73
96 97 2.202743 ACATGACCGCCGACGATG 60.203 61.111 0.00 0.00 43.93 3.84
97 98 2.104132 CATGACCGCCGACGATGA 59.896 61.111 0.00 0.00 43.93 2.92
98 99 1.946156 CATGACCGCCGACGATGAG 60.946 63.158 0.00 0.00 43.93 2.90
99 100 2.119029 ATGACCGCCGACGATGAGA 61.119 57.895 0.00 0.00 43.93 3.27
100 101 2.278013 GACCGCCGACGATGAGAC 60.278 66.667 0.00 0.00 43.93 3.36
101 102 3.753070 GACCGCCGACGATGAGACC 62.753 68.421 0.00 0.00 43.93 3.85
102 103 4.907034 CCGCCGACGATGAGACCG 62.907 72.222 0.00 0.00 43.93 4.79
105 106 4.570663 CCGACGATGAGACCGCCC 62.571 72.222 0.00 0.00 0.00 6.13
106 107 3.518998 CGACGATGAGACCGCCCT 61.519 66.667 0.00 0.00 0.00 5.19
107 108 2.413765 GACGATGAGACCGCCCTC 59.586 66.667 0.00 0.00 0.00 4.30
108 109 2.362503 ACGATGAGACCGCCCTCA 60.363 61.111 7.31 7.31 46.02 3.86
109 110 1.945354 GACGATGAGACCGCCCTCAA 61.945 60.000 8.67 0.00 45.22 3.02
110 111 1.218047 CGATGAGACCGCCCTCAAA 59.782 57.895 8.67 0.00 45.22 2.69
111 112 0.179073 CGATGAGACCGCCCTCAAAT 60.179 55.000 8.67 0.00 45.22 2.32
112 113 1.587547 GATGAGACCGCCCTCAAATC 58.412 55.000 8.67 1.09 45.22 2.17
113 114 0.911769 ATGAGACCGCCCTCAAATCA 59.088 50.000 8.67 0.00 45.22 2.57
114 115 0.250234 TGAGACCGCCCTCAAATCAG 59.750 55.000 2.99 0.00 39.96 2.90
115 116 1.078143 AGACCGCCCTCAAATCAGC 60.078 57.895 0.00 0.00 0.00 4.26
121 122 1.982612 GCCCTCAAATCAGCGAAAAC 58.017 50.000 0.00 0.00 0.00 2.43
122 123 1.729149 GCCCTCAAATCAGCGAAAACG 60.729 52.381 0.00 0.00 0.00 3.60
123 124 1.135689 CCCTCAAATCAGCGAAAACGG 60.136 52.381 0.00 0.00 0.00 4.44
124 125 1.804151 CCTCAAATCAGCGAAAACGGA 59.196 47.619 0.00 0.00 0.00 4.69
125 126 2.412847 CCTCAAATCAGCGAAAACGGAC 60.413 50.000 0.00 0.00 0.00 4.79
126 127 2.480419 CTCAAATCAGCGAAAACGGACT 59.520 45.455 0.00 0.00 0.00 3.85
127 128 3.655486 TCAAATCAGCGAAAACGGACTA 58.345 40.909 0.00 0.00 0.00 2.59
128 129 3.430895 TCAAATCAGCGAAAACGGACTAC 59.569 43.478 0.00 0.00 0.00 2.73
138 139 3.482809 CGGACTACGTCTGCGAGA 58.517 61.111 0.00 0.00 42.00 4.04
139 140 1.792301 CGGACTACGTCTGCGAGAA 59.208 57.895 0.00 0.00 42.00 2.87
140 141 0.247735 CGGACTACGTCTGCGAGAAG 60.248 60.000 0.00 0.00 42.00 2.85
141 142 0.099082 GGACTACGTCTGCGAGAAGG 59.901 60.000 0.00 0.00 42.00 3.46
142 143 0.803740 GACTACGTCTGCGAGAAGGT 59.196 55.000 0.00 0.00 42.00 3.50
143 144 0.522180 ACTACGTCTGCGAGAAGGTG 59.478 55.000 0.00 0.00 42.00 4.00
144 145 0.179161 CTACGTCTGCGAGAAGGTGG 60.179 60.000 0.00 0.00 42.00 4.61
145 146 0.607217 TACGTCTGCGAGAAGGTGGA 60.607 55.000 0.00 0.00 42.00 4.02
146 147 1.153939 CGTCTGCGAGAAGGTGGAG 60.154 63.158 0.00 0.00 41.33 3.86
147 148 1.446966 GTCTGCGAGAAGGTGGAGC 60.447 63.158 0.00 0.00 0.00 4.70
148 149 2.507992 CTGCGAGAAGGTGGAGCG 60.508 66.667 0.00 0.00 0.00 5.03
151 152 4.069232 CGAGAAGGTGGAGCGCCA 62.069 66.667 4.49 4.49 43.47 5.69
172 173 3.905678 CCGCGCCCTCGAGAAGAT 61.906 66.667 15.71 0.00 37.73 2.40
173 174 2.354072 CGCGCCCTCGAGAAGATC 60.354 66.667 15.71 0.00 37.73 2.75
611 612 4.156622 CGACGACGGCAGCGACTA 62.157 66.667 0.00 0.00 35.72 2.59
612 613 2.576317 GACGACGGCAGCGACTAC 60.576 66.667 0.00 0.00 0.00 2.73
613 614 3.318539 GACGACGGCAGCGACTACA 62.319 63.158 0.00 0.00 0.00 2.74
614 615 2.874780 CGACGGCAGCGACTACAC 60.875 66.667 0.00 0.00 0.00 2.90
615 616 2.506438 GACGGCAGCGACTACACC 60.506 66.667 0.00 0.00 0.00 4.16
616 617 3.984200 GACGGCAGCGACTACACCC 62.984 68.421 0.00 0.00 0.00 4.61
618 619 4.814294 GGCAGCGACTACACCCGG 62.814 72.222 0.00 0.00 0.00 5.73
619 620 4.065281 GCAGCGACTACACCCGGT 62.065 66.667 0.00 0.00 36.94 5.28
620 621 2.654877 CAGCGACTACACCCGGTT 59.345 61.111 0.00 0.00 34.04 4.44
621 622 1.445582 CAGCGACTACACCCGGTTC 60.446 63.158 0.00 0.00 34.04 3.62
622 623 1.605738 AGCGACTACACCCGGTTCT 60.606 57.895 0.00 0.00 32.19 3.01
623 624 0.322816 AGCGACTACACCCGGTTCTA 60.323 55.000 0.00 0.00 32.19 2.10
624 625 0.179153 GCGACTACACCCGGTTCTAC 60.179 60.000 0.00 0.00 0.00 2.59
625 626 1.167851 CGACTACACCCGGTTCTACA 58.832 55.000 0.00 0.00 0.00 2.74
626 627 1.131883 CGACTACACCCGGTTCTACAG 59.868 57.143 0.00 0.00 0.00 2.74
627 628 1.475682 GACTACACCCGGTTCTACAGG 59.524 57.143 0.00 0.00 32.98 4.00
628 629 0.175073 CTACACCCGGTTCTACAGGC 59.825 60.000 0.00 0.00 31.76 4.85
629 630 0.251922 TACACCCGGTTCTACAGGCT 60.252 55.000 0.00 0.00 31.76 4.58
630 631 1.218316 CACCCGGTTCTACAGGCTC 59.782 63.158 0.00 0.00 31.76 4.70
631 632 1.988406 ACCCGGTTCTACAGGCTCC 60.988 63.158 0.00 0.00 31.76 4.70
632 633 1.686110 CCCGGTTCTACAGGCTCCT 60.686 63.158 0.00 0.00 31.76 3.69
633 634 1.677637 CCCGGTTCTACAGGCTCCTC 61.678 65.000 0.00 0.00 31.76 3.71
634 635 1.433879 CGGTTCTACAGGCTCCTCG 59.566 63.158 0.00 0.00 0.00 4.63
635 636 1.817209 GGTTCTACAGGCTCCTCGG 59.183 63.158 0.00 0.00 0.00 4.63
636 637 1.142097 GTTCTACAGGCTCCTCGGC 59.858 63.158 0.00 0.00 38.75 5.54
637 638 1.304962 TTCTACAGGCTCCTCGGCA 60.305 57.895 0.00 0.00 41.46 5.69
638 639 0.687757 TTCTACAGGCTCCTCGGCAT 60.688 55.000 0.00 0.00 41.46 4.40
641 642 3.220222 CAGGCTCCTCGGCATGTA 58.780 61.111 0.00 0.00 38.88 2.29
642 643 1.068753 CAGGCTCCTCGGCATGTAG 59.931 63.158 0.00 0.00 38.88 2.74
643 644 1.075970 AGGCTCCTCGGCATGTAGA 60.076 57.895 0.00 0.00 41.46 2.59
644 645 0.687757 AGGCTCCTCGGCATGTAGAA 60.688 55.000 0.00 0.00 41.46 2.10
645 646 0.249657 GGCTCCTCGGCATGTAGAAG 60.250 60.000 0.00 0.00 38.25 2.85
646 647 0.249657 GCTCCTCGGCATGTAGAAGG 60.250 60.000 0.00 0.00 0.00 3.46
647 648 0.249657 CTCCTCGGCATGTAGAAGGC 60.250 60.000 0.00 0.00 0.00 4.35
651 652 2.902343 GGCATGTAGAAGGCGGGC 60.902 66.667 0.00 0.00 0.00 6.13
652 653 3.272334 GCATGTAGAAGGCGGGCG 61.272 66.667 0.00 0.00 0.00 6.13
653 654 2.588877 CATGTAGAAGGCGGGCGG 60.589 66.667 0.00 0.00 0.00 6.13
654 655 3.081409 ATGTAGAAGGCGGGCGGT 61.081 61.111 0.00 0.00 0.00 5.68
655 656 3.385749 ATGTAGAAGGCGGGCGGTG 62.386 63.158 0.00 0.00 0.00 4.94
656 657 4.832608 GTAGAAGGCGGGCGGTGG 62.833 72.222 0.00 0.00 0.00 4.61
669 670 4.230002 GGTGGCGGCGGCATAGTA 62.230 66.667 38.08 13.40 40.92 1.82
670 671 2.661866 GTGGCGGCGGCATAGTAG 60.662 66.667 38.08 0.00 40.92 2.57
671 672 3.151710 TGGCGGCGGCATAGTAGT 61.152 61.111 33.02 0.00 42.47 2.73
672 673 2.661866 GGCGGCGGCATAGTAGTG 60.662 66.667 29.41 0.00 42.47 2.74
673 674 3.338676 GCGGCGGCATAGTAGTGC 61.339 66.667 9.78 0.00 44.31 4.40
674 675 2.417516 CGGCGGCATAGTAGTGCT 59.582 61.111 10.53 0.00 44.45 4.40
675 676 1.658114 CGGCGGCATAGTAGTGCTA 59.342 57.895 10.53 0.00 44.45 3.49
676 677 0.387367 CGGCGGCATAGTAGTGCTAG 60.387 60.000 10.53 0.00 44.45 3.42
677 678 0.038159 GGCGGCATAGTAGTGCTAGG 60.038 60.000 3.07 0.00 44.45 3.02
678 679 0.674534 GCGGCATAGTAGTGCTAGGT 59.325 55.000 1.91 0.00 44.45 3.08
679 680 1.603172 GCGGCATAGTAGTGCTAGGTG 60.603 57.143 1.91 0.00 44.45 4.00
680 681 1.681793 CGGCATAGTAGTGCTAGGTGT 59.318 52.381 1.91 0.00 44.45 4.16
681 682 2.882761 CGGCATAGTAGTGCTAGGTGTA 59.117 50.000 1.91 0.00 44.45 2.90
682 683 3.304525 CGGCATAGTAGTGCTAGGTGTAC 60.305 52.174 1.91 0.00 44.45 2.90
683 684 3.890147 GGCATAGTAGTGCTAGGTGTACT 59.110 47.826 1.91 0.00 44.45 2.73
684 685 4.261656 GGCATAGTAGTGCTAGGTGTACTG 60.262 50.000 1.91 0.00 44.45 2.74
685 686 4.261656 GCATAGTAGTGCTAGGTGTACTGG 60.262 50.000 1.91 0.00 41.64 4.00
686 687 3.453059 AGTAGTGCTAGGTGTACTGGT 57.547 47.619 0.00 0.00 41.64 4.00
687 688 3.354467 AGTAGTGCTAGGTGTACTGGTC 58.646 50.000 0.00 0.00 41.64 4.02
688 689 1.174783 AGTGCTAGGTGTACTGGTCG 58.825 55.000 0.00 0.00 40.11 4.79
689 690 0.886563 GTGCTAGGTGTACTGGTCGT 59.113 55.000 0.00 0.00 0.00 4.34
690 691 1.271656 GTGCTAGGTGTACTGGTCGTT 59.728 52.381 0.00 0.00 0.00 3.85
691 692 1.965643 TGCTAGGTGTACTGGTCGTTT 59.034 47.619 0.00 0.00 0.00 3.60
692 693 2.366266 TGCTAGGTGTACTGGTCGTTTT 59.634 45.455 0.00 0.00 0.00 2.43
693 694 3.181463 TGCTAGGTGTACTGGTCGTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
694 695 4.039004 TGCTAGGTGTACTGGTCGTTTTTA 59.961 41.667 0.00 0.00 0.00 1.52
695 696 4.624452 GCTAGGTGTACTGGTCGTTTTTAG 59.376 45.833 0.00 0.00 0.00 1.85
696 697 4.677673 AGGTGTACTGGTCGTTTTTAGT 57.322 40.909 0.00 0.00 0.00 2.24
697 698 5.027293 AGGTGTACTGGTCGTTTTTAGTT 57.973 39.130 0.00 0.00 0.00 2.24
698 699 6.160576 AGGTGTACTGGTCGTTTTTAGTTA 57.839 37.500 0.00 0.00 0.00 2.24
699 700 6.218746 AGGTGTACTGGTCGTTTTTAGTTAG 58.781 40.000 0.00 0.00 0.00 2.34
700 701 5.985530 GGTGTACTGGTCGTTTTTAGTTAGT 59.014 40.000 0.00 0.00 0.00 2.24
701 702 6.479990 GGTGTACTGGTCGTTTTTAGTTAGTT 59.520 38.462 0.00 0.00 0.00 2.24
702 703 7.011389 GGTGTACTGGTCGTTTTTAGTTAGTTT 59.989 37.037 0.00 0.00 0.00 2.66
703 704 8.390354 GTGTACTGGTCGTTTTTAGTTAGTTTT 58.610 33.333 0.00 0.00 0.00 2.43
704 705 9.593134 TGTACTGGTCGTTTTTAGTTAGTTTTA 57.407 29.630 0.00 0.00 0.00 1.52
749 750 7.804614 TGTACAAATAACAATGAAAATCGGC 57.195 32.000 0.00 0.00 0.00 5.54
750 751 7.598278 TGTACAAATAACAATGAAAATCGGCT 58.402 30.769 0.00 0.00 0.00 5.52
751 752 8.731605 TGTACAAATAACAATGAAAATCGGCTA 58.268 29.630 0.00 0.00 0.00 3.93
752 753 9.221775 GTACAAATAACAATGAAAATCGGCTAG 57.778 33.333 0.00 0.00 0.00 3.42
753 754 7.826690 ACAAATAACAATGAAAATCGGCTAGT 58.173 30.769 0.00 0.00 0.00 2.57
754 755 8.303876 ACAAATAACAATGAAAATCGGCTAGTT 58.696 29.630 0.00 0.00 0.00 2.24
755 756 9.139174 CAAATAACAATGAAAATCGGCTAGTTT 57.861 29.630 0.00 0.00 0.00 2.66
756 757 8.687824 AATAACAATGAAAATCGGCTAGTTTG 57.312 30.769 0.00 0.00 0.00 2.93
757 758 5.059404 ACAATGAAAATCGGCTAGTTTGG 57.941 39.130 0.00 0.00 0.00 3.28
758 759 4.764823 ACAATGAAAATCGGCTAGTTTGGA 59.235 37.500 0.00 0.00 0.00 3.53
759 760 4.965119 ATGAAAATCGGCTAGTTTGGAC 57.035 40.909 0.00 0.00 0.00 4.02
760 761 2.739913 TGAAAATCGGCTAGTTTGGACG 59.260 45.455 0.00 0.00 36.42 4.79
766 767 3.713288 TCGGCTAGTTTGGACGAATATG 58.287 45.455 0.00 0.00 41.51 1.78
767 768 2.221055 CGGCTAGTTTGGACGAATATGC 59.779 50.000 0.00 0.00 37.39 3.14
768 769 2.221055 GGCTAGTTTGGACGAATATGCG 59.779 50.000 0.14 0.14 37.29 4.73
778 779 2.006888 ACGAATATGCGTCCTGTTTGG 58.993 47.619 1.84 0.00 41.22 3.28
779 780 2.276201 CGAATATGCGTCCTGTTTGGA 58.724 47.619 0.00 0.00 43.86 3.53
790 791 4.270245 TCCTGTTTGGATGAAATTTGGC 57.730 40.909 0.00 0.00 40.56 4.52
791 792 3.007831 TCCTGTTTGGATGAAATTTGGCC 59.992 43.478 0.00 0.00 40.56 5.36
792 793 2.995258 CTGTTTGGATGAAATTTGGCCG 59.005 45.455 0.00 0.00 0.00 6.13
793 794 2.630098 TGTTTGGATGAAATTTGGCCGA 59.370 40.909 0.00 0.00 0.00 5.54
794 795 3.253230 GTTTGGATGAAATTTGGCCGAG 58.747 45.455 0.00 0.00 0.00 4.63
795 796 2.214376 TGGATGAAATTTGGCCGAGT 57.786 45.000 0.00 0.00 0.00 4.18
796 797 2.524306 TGGATGAAATTTGGCCGAGTT 58.476 42.857 0.00 0.00 0.00 3.01
797 798 2.896685 TGGATGAAATTTGGCCGAGTTT 59.103 40.909 13.06 13.06 0.00 2.66
798 799 4.082845 TGGATGAAATTTGGCCGAGTTTA 58.917 39.130 13.16 0.00 0.00 2.01
799 800 4.709397 TGGATGAAATTTGGCCGAGTTTAT 59.291 37.500 13.16 4.94 0.00 1.40
800 801 5.186797 TGGATGAAATTTGGCCGAGTTTATT 59.813 36.000 13.16 4.43 0.00 1.40
801 802 6.106003 GGATGAAATTTGGCCGAGTTTATTT 58.894 36.000 13.16 6.75 0.00 1.40
802 803 6.593770 GGATGAAATTTGGCCGAGTTTATTTT 59.406 34.615 13.16 0.00 0.00 1.82
803 804 7.119116 GGATGAAATTTGGCCGAGTTTATTTTT 59.881 33.333 13.16 0.00 0.00 1.94
804 805 7.414814 TGAAATTTGGCCGAGTTTATTTTTC 57.585 32.000 13.16 1.46 0.00 2.29
805 806 6.986817 TGAAATTTGGCCGAGTTTATTTTTCA 59.013 30.769 13.16 4.00 0.00 2.69
806 807 7.495934 TGAAATTTGGCCGAGTTTATTTTTCAA 59.504 29.630 13.16 0.00 0.00 2.69
807 808 7.793927 AATTTGGCCGAGTTTATTTTTCAAA 57.206 28.000 0.00 0.00 0.00 2.69
808 809 7.793927 ATTTGGCCGAGTTTATTTTTCAAAA 57.206 28.000 0.00 0.00 0.00 2.44
809 810 7.611213 TTTGGCCGAGTTTATTTTTCAAAAA 57.389 28.000 0.00 0.00 0.00 1.94
810 811 6.591313 TGGCCGAGTTTATTTTTCAAAAAC 57.409 33.333 0.00 0.00 34.13 2.43
811 812 5.232414 TGGCCGAGTTTATTTTTCAAAAACG 59.768 36.000 0.00 0.00 37.99 3.60
812 813 5.332732 GGCCGAGTTTATTTTTCAAAAACGG 60.333 40.000 13.17 13.17 37.99 4.44
813 814 5.459434 GCCGAGTTTATTTTTCAAAAACGGA 59.541 36.000 19.03 0.00 38.18 4.69
814 815 6.345487 GCCGAGTTTATTTTTCAAAAACGGAG 60.345 38.462 19.03 0.72 38.18 4.63
815 816 6.143278 CCGAGTTTATTTTTCAAAAACGGAGG 59.857 38.462 12.46 1.61 38.18 4.30
816 817 6.143278 CGAGTTTATTTTTCAAAAACGGAGGG 59.857 38.462 0.00 0.00 37.99 4.30
817 818 6.285224 AGTTTATTTTTCAAAAACGGAGGGG 58.715 36.000 0.00 0.00 37.99 4.79
818 819 3.762407 ATTTTTCAAAAACGGAGGGGG 57.238 42.857 0.00 0.00 0.00 5.40
853 854 3.291611 GGAAACCGACCGCTCCTA 58.708 61.111 0.00 0.00 0.00 2.94
854 855 1.153686 GGAAACCGACCGCTCCTAC 60.154 63.158 0.00 0.00 0.00 3.18
855 856 1.588082 GAAACCGACCGCTCCTACA 59.412 57.895 0.00 0.00 0.00 2.74
856 857 0.735287 GAAACCGACCGCTCCTACAC 60.735 60.000 0.00 0.00 0.00 2.90
857 858 2.163601 AAACCGACCGCTCCTACACC 62.164 60.000 0.00 0.00 0.00 4.16
858 859 4.189188 CCGACCGCTCCTACACCG 62.189 72.222 0.00 0.00 0.00 4.94
859 860 3.129502 CGACCGCTCCTACACCGA 61.130 66.667 0.00 0.00 0.00 4.69
860 861 2.478890 CGACCGCTCCTACACCGAT 61.479 63.158 0.00 0.00 0.00 4.18
861 862 1.162181 CGACCGCTCCTACACCGATA 61.162 60.000 0.00 0.00 0.00 2.92
862 863 1.245732 GACCGCTCCTACACCGATAT 58.754 55.000 0.00 0.00 0.00 1.63
863 864 1.612463 GACCGCTCCTACACCGATATT 59.388 52.381 0.00 0.00 0.00 1.28
864 865 2.816087 GACCGCTCCTACACCGATATTA 59.184 50.000 0.00 0.00 0.00 0.98
865 866 3.428532 ACCGCTCCTACACCGATATTAT 58.571 45.455 0.00 0.00 0.00 1.28
866 867 3.442977 ACCGCTCCTACACCGATATTATC 59.557 47.826 0.00 0.00 0.00 1.75
893 894 3.290776 GCCTTGAGACGGCGATATT 57.709 52.632 16.62 0.00 37.87 1.28
894 895 1.583054 GCCTTGAGACGGCGATATTT 58.417 50.000 16.62 0.00 37.87 1.40
895 896 1.527311 GCCTTGAGACGGCGATATTTC 59.473 52.381 16.62 0.00 37.87 2.17
896 897 2.821546 CCTTGAGACGGCGATATTTCA 58.178 47.619 16.62 6.68 0.00 2.69
897 898 3.194861 CCTTGAGACGGCGATATTTCAA 58.805 45.455 16.62 13.80 0.00 2.69
898 899 3.246226 CCTTGAGACGGCGATATTTCAAG 59.754 47.826 16.62 21.10 40.53 3.02
899 900 2.201732 TGAGACGGCGATATTTCAAGC 58.798 47.619 16.62 0.00 0.00 4.01
900 901 1.527311 GAGACGGCGATATTTCAAGCC 59.473 52.381 16.62 0.00 45.67 4.35
901 902 0.586802 GACGGCGATATTTCAAGCCC 59.413 55.000 16.62 0.00 46.36 5.19
902 903 0.818040 ACGGCGATATTTCAAGCCCC 60.818 55.000 16.62 0.00 46.36 5.80
903 904 0.535102 CGGCGATATTTCAAGCCCCT 60.535 55.000 0.00 0.00 46.36 4.79
904 905 1.692411 GGCGATATTTCAAGCCCCTT 58.308 50.000 0.00 0.00 43.54 3.95
905 906 1.338020 GGCGATATTTCAAGCCCCTTG 59.662 52.381 0.00 0.00 43.54 3.61
906 907 1.338020 GCGATATTTCAAGCCCCTTGG 59.662 52.381 5.25 0.00 41.33 3.61
907 908 2.930950 CGATATTTCAAGCCCCTTGGA 58.069 47.619 5.25 0.00 41.33 3.53
908 909 2.880890 CGATATTTCAAGCCCCTTGGAG 59.119 50.000 5.25 0.00 41.33 3.86
909 910 3.433598 CGATATTTCAAGCCCCTTGGAGA 60.434 47.826 5.25 0.00 41.33 3.71
910 911 2.222227 ATTTCAAGCCCCTTGGAGAC 57.778 50.000 5.25 0.00 41.33 3.36
911 912 0.112412 TTTCAAGCCCCTTGGAGACC 59.888 55.000 5.25 0.00 41.33 3.85
912 913 2.045926 CAAGCCCCTTGGAGACCG 60.046 66.667 0.00 0.00 37.77 4.79
913 914 2.203938 AAGCCCCTTGGAGACCGA 60.204 61.111 0.00 0.00 0.00 4.69
914 915 1.846124 AAGCCCCTTGGAGACCGAA 60.846 57.895 0.00 0.00 0.00 4.30
915 916 2.046217 GCCCCTTGGAGACCGAAC 60.046 66.667 0.00 0.00 0.00 3.95
916 917 2.264794 CCCCTTGGAGACCGAACG 59.735 66.667 0.00 0.00 0.00 3.95
917 918 2.264794 CCCTTGGAGACCGAACGG 59.735 66.667 11.83 11.83 42.03 4.44
918 919 2.434359 CCTTGGAGACCGAACGGC 60.434 66.667 13.32 6.39 39.32 5.68
919 920 2.657237 CTTGGAGACCGAACGGCT 59.343 61.111 13.32 10.95 39.32 5.52
920 921 1.446272 CTTGGAGACCGAACGGCTC 60.446 63.158 20.50 20.50 39.32 4.70
929 930 4.005032 GAACGGCTCGAGATGCTC 57.995 61.111 18.75 4.26 0.00 4.26
930 931 1.590259 GAACGGCTCGAGATGCTCC 60.590 63.158 18.75 6.26 0.00 4.70
957 958 1.073722 CCAGGAGCCAGCAAACTCA 59.926 57.895 0.00 0.00 34.48 3.41
961 962 0.877743 GGAGCCAGCAAACTCACTTC 59.122 55.000 0.00 0.00 34.48 3.01
1024 1025 1.825474 ACCTCCCACGTCAGACTAATG 59.175 52.381 0.00 0.00 0.00 1.90
1040 1041 5.045578 AGACTAATGTGCTAACATGGAACCT 60.046 40.000 0.00 0.00 46.58 3.50
1048 1049 4.202461 TGCTAACATGGAACCTGATATCCC 60.202 45.833 0.00 0.00 34.68 3.85
1051 1052 3.339470 ACATGGAACCTGATATCCCCAT 58.661 45.455 0.00 3.09 34.68 4.00
1075 1076 0.897863 CCCTCTCCGGCTCTCCATAG 60.898 65.000 0.00 0.00 0.00 2.23
1076 1077 0.178975 CCTCTCCGGCTCTCCATAGT 60.179 60.000 0.00 0.00 0.00 2.12
1077 1078 1.243902 CTCTCCGGCTCTCCATAGTC 58.756 60.000 0.00 0.00 0.00 2.59
1078 1079 0.178987 TCTCCGGCTCTCCATAGTCC 60.179 60.000 0.00 0.00 0.00 3.85
1079 1080 0.468214 CTCCGGCTCTCCATAGTCCA 60.468 60.000 0.00 0.00 0.00 4.02
1080 1081 0.188587 TCCGGCTCTCCATAGTCCAT 59.811 55.000 0.00 0.00 0.00 3.41
1081 1082 0.319728 CCGGCTCTCCATAGTCCATG 59.680 60.000 0.00 0.00 0.00 3.66
1082 1083 0.320247 CGGCTCTCCATAGTCCATGC 60.320 60.000 0.00 0.00 32.84 4.06
1083 1084 0.036022 GGCTCTCCATAGTCCATGCC 59.964 60.000 0.00 0.00 32.84 4.40
1143 1144 4.588854 ACACACCGGCGCACGTAA 62.589 61.111 10.83 0.00 42.24 3.18
1144 1145 4.067016 CACACCGGCGCACGTAAC 62.067 66.667 10.83 0.00 42.24 2.50
1165 1166 2.248835 AAACCACTACACGCGCACC 61.249 57.895 5.73 0.00 0.00 5.01
1166 1167 2.653953 AAACCACTACACGCGCACCT 62.654 55.000 5.73 0.00 0.00 4.00
1167 1168 1.808531 AACCACTACACGCGCACCTA 61.809 55.000 5.73 0.00 0.00 3.08
1168 1169 1.516386 CCACTACACGCGCACCTAG 60.516 63.158 5.73 4.39 0.00 3.02
1169 1170 1.504900 CACTACACGCGCACCTAGA 59.495 57.895 5.73 0.00 0.00 2.43
1170 1171 0.523546 CACTACACGCGCACCTAGAG 60.524 60.000 5.73 0.00 0.00 2.43
1171 1172 1.586564 CTACACGCGCACCTAGAGC 60.587 63.158 5.73 0.00 39.93 4.09
1176 1177 0.458025 ACGCGCACCTAGAGCTAAAC 60.458 55.000 5.73 0.00 41.30 2.01
1178 1179 1.802880 CGCGCACCTAGAGCTAAACAT 60.803 52.381 8.75 0.00 41.30 2.71
1179 1180 1.861575 GCGCACCTAGAGCTAAACATC 59.138 52.381 0.30 0.00 40.21 3.06
1180 1181 2.474816 CGCACCTAGAGCTAAACATCC 58.525 52.381 0.00 0.00 0.00 3.51
1190 1194 2.016604 GCTAAACATCCATGACCGCCA 61.017 52.381 0.00 0.00 0.00 5.69
1192 1196 0.251121 AAACATCCATGACCGCCACA 60.251 50.000 0.00 0.00 0.00 4.17
1193 1197 0.034186 AACATCCATGACCGCCACAT 60.034 50.000 0.00 0.00 0.00 3.21
1194 1198 0.034186 ACATCCATGACCGCCACATT 60.034 50.000 0.00 0.00 0.00 2.71
1195 1199 0.664761 CATCCATGACCGCCACATTC 59.335 55.000 0.00 0.00 0.00 2.67
1196 1200 0.815213 ATCCATGACCGCCACATTCG 60.815 55.000 0.00 0.00 0.00 3.34
1204 1208 3.799755 GCCACATTCGCGACCACC 61.800 66.667 9.15 0.00 0.00 4.61
1446 1450 0.038159 CCGTCGCTCAAGAACTTCCT 60.038 55.000 0.00 0.00 0.00 3.36
1453 1457 2.075338 CTCAAGAACTTCCTGCTCAGC 58.925 52.381 0.00 0.00 0.00 4.26
1657 1661 4.155280 CCGTTCAGATTTATTTCACGGGTT 59.845 41.667 0.00 0.00 41.60 4.11
1679 1683 5.493133 TTGTGCTCAAATCGTTGTTAACT 57.507 34.783 7.22 0.00 36.07 2.24
1680 1684 6.606234 TTGTGCTCAAATCGTTGTTAACTA 57.394 33.333 7.22 0.00 36.07 2.24
1734 1738 3.149005 ACCGATCCCAAGCTACAAAAA 57.851 42.857 0.00 0.00 0.00 1.94
1768 1772 3.492309 CCAGATCGTAAGCATGCTCTTCT 60.492 47.826 22.93 15.03 37.18 2.85
1810 1855 2.965671 CCATCTGGTATCCATTGGCT 57.034 50.000 0.00 0.00 32.53 4.75
1819 1874 3.259876 GGTATCCATTGGCTACATACGGA 59.740 47.826 16.39 0.00 0.00 4.69
1881 1936 4.614036 CCCACCCACCCACCCAAC 62.614 72.222 0.00 0.00 0.00 3.77
1887 1942 1.135960 CCCACCCACCCAACAAAATT 58.864 50.000 0.00 0.00 0.00 1.82
1888 1943 1.071542 CCCACCCACCCAACAAAATTC 59.928 52.381 0.00 0.00 0.00 2.17
1889 1944 1.765314 CCACCCACCCAACAAAATTCA 59.235 47.619 0.00 0.00 0.00 2.57
1890 1945 2.224257 CCACCCACCCAACAAAATTCAG 60.224 50.000 0.00 0.00 0.00 3.02
1950 2006 2.804986 TGCCAGCTAATCACAATCCA 57.195 45.000 0.00 0.00 0.00 3.41
1957 2013 5.303589 CCAGCTAATCACAATCCATGGAATT 59.696 40.000 20.67 15.55 0.00 2.17
1975 2031 9.755064 CATGGAATTCGTAATTATAAATCCGTC 57.245 33.333 0.00 0.27 0.00 4.79
2021 2077 3.060602 GAGCAGTTGTTAGTCTCGCTTT 58.939 45.455 0.00 0.00 0.00 3.51
2028 2084 2.029290 TGTTAGTCTCGCTTTCAGGGTC 60.029 50.000 0.00 0.00 0.00 4.46
2142 2205 2.133553 TCGGTTTATTTTCGCGTCACA 58.866 42.857 5.77 0.00 0.00 3.58
2143 2206 2.156117 TCGGTTTATTTTCGCGTCACAG 59.844 45.455 5.77 0.00 0.00 3.66
2166 2229 6.420903 CAGTCTCACACAACGAAAGAAATCTA 59.579 38.462 0.00 0.00 0.00 1.98
2171 2234 7.753659 TCACACAACGAAAGAAATCTAAACAA 58.246 30.769 0.00 0.00 0.00 2.83
2353 2416 6.869913 CACATTAACCTTACCTTAACTCACGA 59.130 38.462 0.00 0.00 0.00 4.35
2495 2558 3.066190 GCTGATGCTTGGGCTGCA 61.066 61.111 0.50 3.33 44.95 4.41
2590 2653 2.531942 AAGGGGGCGAAGAAGGGT 60.532 61.111 0.00 0.00 0.00 4.34
2626 2713 3.636231 CGTGGCCCTGGGAGTTGA 61.636 66.667 19.27 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.888464 GAAGAAGGTAAGGGGCGGCC 62.888 65.000 22.00 22.00 0.00 6.13
1 2 1.451567 GAAGAAGGTAAGGGGCGGC 60.452 63.158 0.00 0.00 0.00 6.53
2 3 0.618981 AAGAAGAAGGTAAGGGGCGG 59.381 55.000 0.00 0.00 0.00 6.13
4 5 1.064611 GGGAAGAAGAAGGTAAGGGGC 60.065 57.143 0.00 0.00 0.00 5.80
5 6 1.209747 CGGGAAGAAGAAGGTAAGGGG 59.790 57.143 0.00 0.00 0.00 4.79
6 7 1.209747 CCGGGAAGAAGAAGGTAAGGG 59.790 57.143 0.00 0.00 0.00 3.95
7 8 1.407025 GCCGGGAAGAAGAAGGTAAGG 60.407 57.143 2.18 0.00 0.00 2.69
8 9 1.555533 AGCCGGGAAGAAGAAGGTAAG 59.444 52.381 2.18 0.00 0.00 2.34
9 10 1.553704 GAGCCGGGAAGAAGAAGGTAA 59.446 52.381 2.18 0.00 0.00 2.85
10 11 1.192428 GAGCCGGGAAGAAGAAGGTA 58.808 55.000 2.18 0.00 0.00 3.08
11 12 1.889530 CGAGCCGGGAAGAAGAAGGT 61.890 60.000 2.18 0.00 0.00 3.50
12 13 1.153549 CGAGCCGGGAAGAAGAAGG 60.154 63.158 2.18 0.00 0.00 3.46
13 14 0.458716 GACGAGCCGGGAAGAAGAAG 60.459 60.000 2.18 0.00 0.00 2.85
14 15 1.183030 TGACGAGCCGGGAAGAAGAA 61.183 55.000 2.18 0.00 0.00 2.52
15 16 1.595993 CTGACGAGCCGGGAAGAAGA 61.596 60.000 2.18 0.00 0.00 2.87
16 17 1.153745 CTGACGAGCCGGGAAGAAG 60.154 63.158 2.18 0.00 0.00 2.85
17 18 2.646175 CCTGACGAGCCGGGAAGAA 61.646 63.158 2.18 0.00 34.45 2.52
18 19 3.068691 CCTGACGAGCCGGGAAGA 61.069 66.667 2.18 0.00 34.45 2.87
19 20 4.821589 GCCTGACGAGCCGGGAAG 62.822 72.222 2.18 0.00 34.45 3.46
26 27 2.507324 GTCTTCGGCCTGACGAGC 60.507 66.667 0.00 0.00 44.47 5.03
27 28 2.182030 GGTCTTCGGCCTGACGAG 59.818 66.667 0.00 0.00 44.47 4.18
28 29 3.744719 CGGTCTTCGGCCTGACGA 61.745 66.667 0.00 0.02 41.76 4.20
29 30 3.685214 CTCGGTCTTCGGCCTGACG 62.685 68.421 0.00 0.00 39.77 4.35
30 31 2.182030 CTCGGTCTTCGGCCTGAC 59.818 66.667 0.00 6.52 39.77 3.51
31 32 3.760035 GCTCGGTCTTCGGCCTGA 61.760 66.667 0.00 0.00 39.77 3.86
32 33 4.821589 GGCTCGGTCTTCGGCCTG 62.822 72.222 0.00 0.00 45.38 4.85
38 39 3.703127 AACCCCGGCTCGGTCTTC 61.703 66.667 11.85 0.00 46.80 2.87
39 40 4.016706 CAACCCCGGCTCGGTCTT 62.017 66.667 11.85 1.32 46.80 3.01
52 53 2.359975 CCTTCACGGGGAGCAACC 60.360 66.667 0.00 0.00 38.08 3.77
53 54 1.376037 CTCCTTCACGGGGAGCAAC 60.376 63.158 0.00 0.00 42.95 4.17
54 55 3.068881 CTCCTTCACGGGGAGCAA 58.931 61.111 0.00 0.00 42.95 3.91
63 64 3.112709 GTCCGCGTGCTCCTTCAC 61.113 66.667 4.92 0.00 0.00 3.18
64 65 2.942796 ATGTCCGCGTGCTCCTTCA 61.943 57.895 4.92 0.00 0.00 3.02
65 66 2.125512 ATGTCCGCGTGCTCCTTC 60.126 61.111 4.92 0.00 0.00 3.46
66 67 2.434884 CATGTCCGCGTGCTCCTT 60.435 61.111 4.92 0.00 0.00 3.36
67 68 3.381983 TCATGTCCGCGTGCTCCT 61.382 61.111 4.92 0.00 0.00 3.69
68 69 3.188786 GTCATGTCCGCGTGCTCC 61.189 66.667 4.92 0.00 0.00 4.70
69 70 3.188786 GGTCATGTCCGCGTGCTC 61.189 66.667 4.92 0.00 0.00 4.26
77 78 3.426117 ATCGTCGGCGGTCATGTCC 62.426 63.158 10.62 0.00 38.89 4.02
78 79 2.104331 ATCGTCGGCGGTCATGTC 59.896 61.111 10.62 0.00 38.89 3.06
79 80 2.202743 CATCGTCGGCGGTCATGT 60.203 61.111 10.62 0.00 38.89 3.21
80 81 1.946156 CTCATCGTCGGCGGTCATG 60.946 63.158 10.62 6.39 38.89 3.07
81 82 2.119029 TCTCATCGTCGGCGGTCAT 61.119 57.895 10.62 0.00 38.89 3.06
82 83 2.748647 TCTCATCGTCGGCGGTCA 60.749 61.111 10.62 0.00 38.89 4.02
83 84 2.278013 GTCTCATCGTCGGCGGTC 60.278 66.667 10.62 0.00 38.89 4.79
84 85 3.823330 GGTCTCATCGTCGGCGGT 61.823 66.667 10.62 0.00 38.89 5.68
85 86 4.907034 CGGTCTCATCGTCGGCGG 62.907 72.222 10.62 0.00 38.89 6.13
88 89 4.570663 GGGCGGTCTCATCGTCGG 62.571 72.222 0.00 0.00 32.45 4.79
89 90 3.471244 GAGGGCGGTCTCATCGTCG 62.471 68.421 0.00 0.00 34.13 5.12
90 91 1.945354 TTGAGGGCGGTCTCATCGTC 61.945 60.000 4.31 0.00 42.57 4.20
91 92 1.541310 TTTGAGGGCGGTCTCATCGT 61.541 55.000 4.31 0.00 42.57 3.73
92 93 0.179073 ATTTGAGGGCGGTCTCATCG 60.179 55.000 4.31 0.00 42.57 3.84
93 94 1.134401 TGATTTGAGGGCGGTCTCATC 60.134 52.381 4.31 1.97 42.57 2.92
94 95 0.911769 TGATTTGAGGGCGGTCTCAT 59.088 50.000 4.31 0.00 42.57 2.90
95 96 0.250234 CTGATTTGAGGGCGGTCTCA 59.750 55.000 0.00 0.00 41.51 3.27
96 97 1.092345 GCTGATTTGAGGGCGGTCTC 61.092 60.000 0.00 0.00 0.00 3.36
97 98 1.078143 GCTGATTTGAGGGCGGTCT 60.078 57.895 0.00 0.00 0.00 3.85
98 99 2.464459 CGCTGATTTGAGGGCGGTC 61.464 63.158 0.00 0.00 43.25 4.79
99 100 2.436646 CGCTGATTTGAGGGCGGT 60.437 61.111 0.00 0.00 43.25 5.68
100 101 1.305219 TTTCGCTGATTTGAGGGCGG 61.305 55.000 6.36 0.00 46.31 6.13
102 103 1.729149 CGTTTTCGCTGATTTGAGGGC 60.729 52.381 0.00 0.00 36.22 5.19
103 104 1.135689 CCGTTTTCGCTGATTTGAGGG 60.136 52.381 0.00 0.00 42.58 4.30
104 105 1.804151 TCCGTTTTCGCTGATTTGAGG 59.196 47.619 0.00 0.00 42.58 3.86
105 106 2.480419 AGTCCGTTTTCGCTGATTTGAG 59.520 45.455 0.00 0.00 42.58 3.02
106 107 2.489971 AGTCCGTTTTCGCTGATTTGA 58.510 42.857 0.00 0.00 42.58 2.69
107 108 2.969443 AGTCCGTTTTCGCTGATTTG 57.031 45.000 0.00 0.00 42.58 2.32
108 109 2.410730 CGTAGTCCGTTTTCGCTGATTT 59.589 45.455 0.00 0.00 42.58 2.17
109 110 1.990563 CGTAGTCCGTTTTCGCTGATT 59.009 47.619 0.00 0.00 42.58 2.57
110 111 1.625616 CGTAGTCCGTTTTCGCTGAT 58.374 50.000 0.00 0.00 42.58 2.90
111 112 3.096541 CGTAGTCCGTTTTCGCTGA 57.903 52.632 0.00 0.00 42.58 4.26
125 126 0.179161 CCACCTTCTCGCAGACGTAG 60.179 60.000 0.00 0.00 41.18 3.51
126 127 0.607217 TCCACCTTCTCGCAGACGTA 60.607 55.000 0.00 0.00 41.18 3.57
127 128 1.867919 CTCCACCTTCTCGCAGACGT 61.868 60.000 0.00 0.00 41.18 4.34
128 129 1.153939 CTCCACCTTCTCGCAGACG 60.154 63.158 0.00 0.00 42.01 4.18
129 130 1.446966 GCTCCACCTTCTCGCAGAC 60.447 63.158 0.00 0.00 0.00 3.51
130 131 2.973899 GCTCCACCTTCTCGCAGA 59.026 61.111 0.00 0.00 0.00 4.26
131 132 2.507992 CGCTCCACCTTCTCGCAG 60.508 66.667 0.00 0.00 0.00 5.18
132 133 4.742201 GCGCTCCACCTTCTCGCA 62.742 66.667 0.00 0.00 44.50 5.10
134 135 3.997064 CTGGCGCTCCACCTTCTCG 62.997 68.421 7.64 0.00 37.47 4.04
135 136 2.125350 CTGGCGCTCCACCTTCTC 60.125 66.667 7.64 0.00 37.47 2.87
136 137 4.400961 GCTGGCGCTCCACCTTCT 62.401 66.667 7.64 0.00 37.47 2.85
155 156 3.832720 GATCTTCTCGAGGGCGCGG 62.833 68.421 13.56 0.00 37.46 6.46
156 157 2.354072 GATCTTCTCGAGGGCGCG 60.354 66.667 13.56 0.00 37.46 6.86
594 595 4.156622 TAGTCGCTGCCGTCGTCG 62.157 66.667 0.00 0.00 35.54 5.12
595 596 2.576317 GTAGTCGCTGCCGTCGTC 60.576 66.667 0.00 0.00 35.54 4.20
596 597 3.359523 TGTAGTCGCTGCCGTCGT 61.360 61.111 0.00 0.00 35.54 4.34
597 598 2.874780 GTGTAGTCGCTGCCGTCG 60.875 66.667 0.00 0.00 35.54 5.12
598 599 2.506438 GGTGTAGTCGCTGCCGTC 60.506 66.667 0.00 0.00 35.54 4.79
599 600 4.065281 GGGTGTAGTCGCTGCCGT 62.065 66.667 0.00 0.00 35.54 5.68
601 602 4.814294 CCGGGTGTAGTCGCTGCC 62.814 72.222 0.00 0.00 0.00 4.85
602 603 3.584868 AACCGGGTGTAGTCGCTGC 62.585 63.158 6.32 0.00 0.00 5.25
603 604 1.445582 GAACCGGGTGTAGTCGCTG 60.446 63.158 6.32 0.00 0.00 5.18
604 605 0.322816 TAGAACCGGGTGTAGTCGCT 60.323 55.000 6.32 0.00 0.00 4.93
605 606 0.179153 GTAGAACCGGGTGTAGTCGC 60.179 60.000 6.32 0.00 0.00 5.19
606 607 1.131883 CTGTAGAACCGGGTGTAGTCG 59.868 57.143 6.32 0.00 0.00 4.18
607 608 1.475682 CCTGTAGAACCGGGTGTAGTC 59.524 57.143 6.32 0.00 0.00 2.59
608 609 1.553706 CCTGTAGAACCGGGTGTAGT 58.446 55.000 6.32 0.00 0.00 2.73
609 610 0.175073 GCCTGTAGAACCGGGTGTAG 59.825 60.000 6.32 0.00 0.00 2.74
610 611 0.251922 AGCCTGTAGAACCGGGTGTA 60.252 55.000 6.32 0.00 31.94 2.90
611 612 1.535687 AGCCTGTAGAACCGGGTGT 60.536 57.895 6.32 0.00 31.94 4.16
612 613 1.218316 GAGCCTGTAGAACCGGGTG 59.782 63.158 6.32 0.00 33.32 4.61
613 614 1.988406 GGAGCCTGTAGAACCGGGT 60.988 63.158 6.32 0.00 35.89 5.28
614 615 1.677637 GAGGAGCCTGTAGAACCGGG 61.678 65.000 6.32 0.00 0.00 5.73
615 616 1.817209 GAGGAGCCTGTAGAACCGG 59.183 63.158 0.00 0.00 0.00 5.28
616 617 1.433879 CGAGGAGCCTGTAGAACCG 59.566 63.158 0.00 0.00 0.00 4.44
617 618 1.817209 CCGAGGAGCCTGTAGAACC 59.183 63.158 0.00 0.00 0.00 3.62
618 619 1.142097 GCCGAGGAGCCTGTAGAAC 59.858 63.158 0.00 0.00 0.00 3.01
619 620 0.687757 ATGCCGAGGAGCCTGTAGAA 60.688 55.000 0.00 0.00 0.00 2.10
620 621 1.075970 ATGCCGAGGAGCCTGTAGA 60.076 57.895 0.00 0.00 0.00 2.59
621 622 1.068753 CATGCCGAGGAGCCTGTAG 59.931 63.158 0.00 0.00 0.00 2.74
622 623 0.396556 TACATGCCGAGGAGCCTGTA 60.397 55.000 0.00 0.00 41.17 2.74
623 624 1.680522 CTACATGCCGAGGAGCCTGT 61.681 60.000 0.00 0.39 43.00 4.00
624 625 1.068753 CTACATGCCGAGGAGCCTG 59.931 63.158 0.00 0.00 34.88 4.85
625 626 0.687757 TTCTACATGCCGAGGAGCCT 60.688 55.000 0.00 0.00 0.00 4.58
626 627 0.249657 CTTCTACATGCCGAGGAGCC 60.250 60.000 0.00 0.00 0.00 4.70
627 628 0.249657 CCTTCTACATGCCGAGGAGC 60.250 60.000 0.00 0.00 0.00 4.70
628 629 0.249657 GCCTTCTACATGCCGAGGAG 60.250 60.000 8.67 1.21 0.00 3.69
629 630 1.823295 GCCTTCTACATGCCGAGGA 59.177 57.895 8.67 0.00 0.00 3.71
630 631 1.592669 CGCCTTCTACATGCCGAGG 60.593 63.158 0.00 0.00 0.00 4.63
631 632 1.592669 CCGCCTTCTACATGCCGAG 60.593 63.158 0.00 0.00 0.00 4.63
632 633 2.499205 CCGCCTTCTACATGCCGA 59.501 61.111 0.00 0.00 0.00 5.54
633 634 2.588877 CCCGCCTTCTACATGCCG 60.589 66.667 0.00 0.00 0.00 5.69
634 635 2.902343 GCCCGCCTTCTACATGCC 60.902 66.667 0.00 0.00 0.00 4.40
635 636 3.272334 CGCCCGCCTTCTACATGC 61.272 66.667 0.00 0.00 0.00 4.06
636 637 2.588877 CCGCCCGCCTTCTACATG 60.589 66.667 0.00 0.00 0.00 3.21
637 638 3.081409 ACCGCCCGCCTTCTACAT 61.081 61.111 0.00 0.00 0.00 2.29
638 639 4.077184 CACCGCCCGCCTTCTACA 62.077 66.667 0.00 0.00 0.00 2.74
639 640 4.832608 CCACCGCCCGCCTTCTAC 62.833 72.222 0.00 0.00 0.00 2.59
652 653 4.230002 TACTATGCCGCCGCCACC 62.230 66.667 0.00 0.00 0.00 4.61
653 654 2.661866 CTACTATGCCGCCGCCAC 60.662 66.667 0.00 0.00 0.00 5.01
654 655 3.151710 ACTACTATGCCGCCGCCA 61.152 61.111 0.00 0.00 0.00 5.69
655 656 2.661866 CACTACTATGCCGCCGCC 60.662 66.667 0.00 0.00 0.00 6.13
656 657 3.338676 GCACTACTATGCCGCCGC 61.339 66.667 0.00 0.00 39.86 6.53
662 663 4.261656 CCAGTACACCTAGCACTACTATGC 60.262 50.000 0.00 0.00 46.50 3.14
663 664 4.888239 ACCAGTACACCTAGCACTACTATG 59.112 45.833 0.00 0.00 0.00 2.23
664 665 5.126699 ACCAGTACACCTAGCACTACTAT 57.873 43.478 0.00 0.00 0.00 2.12
665 666 4.521146 GACCAGTACACCTAGCACTACTA 58.479 47.826 0.00 0.00 0.00 1.82
666 667 3.354467 GACCAGTACACCTAGCACTACT 58.646 50.000 0.00 0.00 0.00 2.57
667 668 2.097142 CGACCAGTACACCTAGCACTAC 59.903 54.545 0.00 0.00 0.00 2.73
668 669 2.290514 ACGACCAGTACACCTAGCACTA 60.291 50.000 0.00 0.00 0.00 2.74
669 670 1.174783 CGACCAGTACACCTAGCACT 58.825 55.000 0.00 0.00 0.00 4.40
670 671 0.886563 ACGACCAGTACACCTAGCAC 59.113 55.000 0.00 0.00 0.00 4.40
671 672 1.624336 AACGACCAGTACACCTAGCA 58.376 50.000 0.00 0.00 0.00 3.49
672 673 2.738013 AAACGACCAGTACACCTAGC 57.262 50.000 0.00 0.00 0.00 3.42
673 674 5.776744 ACTAAAAACGACCAGTACACCTAG 58.223 41.667 0.00 0.00 0.00 3.02
674 675 5.789643 ACTAAAAACGACCAGTACACCTA 57.210 39.130 0.00 0.00 0.00 3.08
675 676 4.677673 ACTAAAAACGACCAGTACACCT 57.322 40.909 0.00 0.00 0.00 4.00
676 677 5.985530 ACTAACTAAAAACGACCAGTACACC 59.014 40.000 0.00 0.00 0.00 4.16
677 678 7.468922 AACTAACTAAAAACGACCAGTACAC 57.531 36.000 0.00 0.00 0.00 2.90
678 679 8.491331 AAAACTAACTAAAAACGACCAGTACA 57.509 30.769 0.00 0.00 0.00 2.90
723 724 9.509855 GCCGATTTTCATTGTTATTTGTACATA 57.490 29.630 0.00 0.00 0.00 2.29
724 725 8.250332 AGCCGATTTTCATTGTTATTTGTACAT 58.750 29.630 0.00 0.00 0.00 2.29
725 726 7.598278 AGCCGATTTTCATTGTTATTTGTACA 58.402 30.769 0.00 0.00 0.00 2.90
726 727 9.221775 CTAGCCGATTTTCATTGTTATTTGTAC 57.778 33.333 0.00 0.00 0.00 2.90
727 728 8.952278 ACTAGCCGATTTTCATTGTTATTTGTA 58.048 29.630 0.00 0.00 0.00 2.41
728 729 7.826690 ACTAGCCGATTTTCATTGTTATTTGT 58.173 30.769 0.00 0.00 0.00 2.83
729 730 8.687824 AACTAGCCGATTTTCATTGTTATTTG 57.312 30.769 0.00 0.00 0.00 2.32
730 731 9.139174 CAAACTAGCCGATTTTCATTGTTATTT 57.861 29.630 0.00 0.00 0.00 1.40
731 732 7.759433 CCAAACTAGCCGATTTTCATTGTTATT 59.241 33.333 0.00 0.00 0.00 1.40
732 733 7.122055 TCCAAACTAGCCGATTTTCATTGTTAT 59.878 33.333 0.00 0.00 0.00 1.89
733 734 6.431543 TCCAAACTAGCCGATTTTCATTGTTA 59.568 34.615 0.00 0.00 0.00 2.41
734 735 5.242838 TCCAAACTAGCCGATTTTCATTGTT 59.757 36.000 0.00 0.00 0.00 2.83
735 736 4.764823 TCCAAACTAGCCGATTTTCATTGT 59.235 37.500 0.00 0.00 0.00 2.71
736 737 5.095490 GTCCAAACTAGCCGATTTTCATTG 58.905 41.667 0.00 0.00 0.00 2.82
737 738 4.142687 CGTCCAAACTAGCCGATTTTCATT 60.143 41.667 0.00 0.00 0.00 2.57
738 739 3.374058 CGTCCAAACTAGCCGATTTTCAT 59.626 43.478 0.00 0.00 0.00 2.57
739 740 2.739913 CGTCCAAACTAGCCGATTTTCA 59.260 45.455 0.00 0.00 0.00 2.69
740 741 2.997986 TCGTCCAAACTAGCCGATTTTC 59.002 45.455 0.00 0.00 0.00 2.29
741 742 3.048337 TCGTCCAAACTAGCCGATTTT 57.952 42.857 0.00 0.00 0.00 1.82
742 743 2.754946 TCGTCCAAACTAGCCGATTT 57.245 45.000 0.00 0.00 0.00 2.17
743 744 2.754946 TTCGTCCAAACTAGCCGATT 57.245 45.000 0.00 0.00 0.00 3.34
744 745 2.981859 ATTCGTCCAAACTAGCCGAT 57.018 45.000 0.00 0.00 0.00 4.18
745 746 3.713288 CATATTCGTCCAAACTAGCCGA 58.287 45.455 0.00 0.00 0.00 5.54
746 747 2.221055 GCATATTCGTCCAAACTAGCCG 59.779 50.000 0.00 0.00 0.00 5.52
747 748 2.221055 CGCATATTCGTCCAAACTAGCC 59.779 50.000 0.00 0.00 0.00 3.93
748 749 2.864343 ACGCATATTCGTCCAAACTAGC 59.136 45.455 0.00 0.00 38.44 3.42
758 759 2.006888 CCAAACAGGACGCATATTCGT 58.993 47.619 0.00 0.00 46.38 3.85
759 760 2.276201 TCCAAACAGGACGCATATTCG 58.724 47.619 0.00 0.00 43.07 3.34
770 771 3.337358 GGCCAAATTTCATCCAAACAGG 58.663 45.455 0.00 0.00 39.47 4.00
771 772 2.995258 CGGCCAAATTTCATCCAAACAG 59.005 45.455 2.24 0.00 0.00 3.16
772 773 2.630098 TCGGCCAAATTTCATCCAAACA 59.370 40.909 2.24 0.00 0.00 2.83
773 774 3.253230 CTCGGCCAAATTTCATCCAAAC 58.747 45.455 2.24 0.00 0.00 2.93
774 775 2.896685 ACTCGGCCAAATTTCATCCAAA 59.103 40.909 2.24 0.00 0.00 3.28
775 776 2.524306 ACTCGGCCAAATTTCATCCAA 58.476 42.857 2.24 0.00 0.00 3.53
776 777 2.214376 ACTCGGCCAAATTTCATCCA 57.786 45.000 2.24 0.00 0.00 3.41
777 778 3.592898 AAACTCGGCCAAATTTCATCC 57.407 42.857 2.24 0.00 0.00 3.51
778 779 7.595311 AAAATAAACTCGGCCAAATTTCATC 57.405 32.000 2.24 0.00 0.00 2.92
779 780 7.659390 TGAAAAATAAACTCGGCCAAATTTCAT 59.341 29.630 2.24 0.00 30.64 2.57
780 781 6.986817 TGAAAAATAAACTCGGCCAAATTTCA 59.013 30.769 2.24 3.50 32.50 2.69
781 782 7.414814 TGAAAAATAAACTCGGCCAAATTTC 57.585 32.000 2.24 0.91 0.00 2.17
782 783 7.793927 TTGAAAAATAAACTCGGCCAAATTT 57.206 28.000 2.24 1.60 0.00 1.82
783 784 7.793927 TTTGAAAAATAAACTCGGCCAAATT 57.206 28.000 2.24 0.00 0.00 1.82
784 785 7.793927 TTTTGAAAAATAAACTCGGCCAAAT 57.206 28.000 2.24 0.00 0.00 2.32
785 786 7.465173 GTTTTTGAAAAATAAACTCGGCCAAA 58.535 30.769 6.35 0.00 0.00 3.28
786 787 6.237861 CGTTTTTGAAAAATAAACTCGGCCAA 60.238 34.615 6.35 0.00 31.33 4.52
787 788 5.232414 CGTTTTTGAAAAATAAACTCGGCCA 59.768 36.000 6.35 0.00 31.33 5.36
788 789 5.332732 CCGTTTTTGAAAAATAAACTCGGCC 60.333 40.000 12.65 0.00 31.80 6.13
789 790 5.459434 TCCGTTTTTGAAAAATAAACTCGGC 59.541 36.000 17.59 0.00 35.48 5.54
790 791 6.143278 CCTCCGTTTTTGAAAAATAAACTCGG 59.857 38.462 16.76 16.76 36.14 4.63
791 792 6.143278 CCCTCCGTTTTTGAAAAATAAACTCG 59.857 38.462 6.35 4.39 31.33 4.18
792 793 6.422701 CCCCTCCGTTTTTGAAAAATAAACTC 59.577 38.462 6.35 0.00 31.33 3.01
793 794 6.285224 CCCCTCCGTTTTTGAAAAATAAACT 58.715 36.000 6.35 0.00 31.33 2.66
794 795 5.467399 CCCCCTCCGTTTTTGAAAAATAAAC 59.533 40.000 6.35 0.00 0.00 2.01
795 796 5.612351 CCCCCTCCGTTTTTGAAAAATAAA 58.388 37.500 6.35 0.00 0.00 1.40
796 797 5.216614 CCCCCTCCGTTTTTGAAAAATAA 57.783 39.130 6.35 0.00 0.00 1.40
797 798 4.875561 CCCCCTCCGTTTTTGAAAAATA 57.124 40.909 6.35 0.00 0.00 1.40
798 799 3.762407 CCCCCTCCGTTTTTGAAAAAT 57.238 42.857 6.35 0.00 0.00 1.82
836 837 1.153686 GTAGGAGCGGTCGGTTTCC 60.154 63.158 8.77 0.00 0.00 3.13
837 838 0.735287 GTGTAGGAGCGGTCGGTTTC 60.735 60.000 8.77 0.00 0.00 2.78
838 839 1.291272 GTGTAGGAGCGGTCGGTTT 59.709 57.895 8.77 0.00 0.00 3.27
839 840 2.643232 GGTGTAGGAGCGGTCGGTT 61.643 63.158 8.77 0.00 0.00 4.44
840 841 3.066814 GGTGTAGGAGCGGTCGGT 61.067 66.667 8.77 0.67 0.00 4.69
841 842 4.189188 CGGTGTAGGAGCGGTCGG 62.189 72.222 8.77 0.00 42.02 4.79
842 843 1.162181 TATCGGTGTAGGAGCGGTCG 61.162 60.000 8.77 0.00 45.85 4.79
843 844 1.245732 ATATCGGTGTAGGAGCGGTC 58.754 55.000 5.93 5.93 45.85 4.79
844 845 1.700955 AATATCGGTGTAGGAGCGGT 58.299 50.000 0.00 0.00 45.85 5.68
845 846 4.030134 GATAATATCGGTGTAGGAGCGG 57.970 50.000 0.00 0.00 45.85 5.52
876 877 2.821546 TGAAATATCGCCGTCTCAAGG 58.178 47.619 0.00 0.00 0.00 3.61
877 878 3.302740 GCTTGAAATATCGCCGTCTCAAG 60.303 47.826 5.47 5.47 41.62 3.02
878 879 2.607635 GCTTGAAATATCGCCGTCTCAA 59.392 45.455 0.00 0.00 0.00 3.02
879 880 2.201732 GCTTGAAATATCGCCGTCTCA 58.798 47.619 0.00 0.00 0.00 3.27
880 881 1.527311 GGCTTGAAATATCGCCGTCTC 59.473 52.381 0.00 0.00 32.22 3.36
881 882 1.583054 GGCTTGAAATATCGCCGTCT 58.417 50.000 0.00 0.00 32.22 4.18
882 883 0.586802 GGGCTTGAAATATCGCCGTC 59.413 55.000 0.00 0.00 43.38 4.79
883 884 0.818040 GGGGCTTGAAATATCGCCGT 60.818 55.000 0.00 0.00 43.38 5.68
884 885 0.535102 AGGGGCTTGAAATATCGCCG 60.535 55.000 0.00 0.00 43.38 6.46
885 886 1.338020 CAAGGGGCTTGAAATATCGCC 59.662 52.381 0.00 0.00 43.42 5.54
886 887 1.338020 CCAAGGGGCTTGAAATATCGC 59.662 52.381 0.00 0.00 43.42 4.58
887 888 2.880890 CTCCAAGGGGCTTGAAATATCG 59.119 50.000 0.00 0.00 43.42 2.92
888 889 3.885901 GTCTCCAAGGGGCTTGAAATATC 59.114 47.826 0.00 0.00 43.42 1.63
889 890 3.373110 GGTCTCCAAGGGGCTTGAAATAT 60.373 47.826 0.00 0.00 43.42 1.28
890 891 2.025321 GGTCTCCAAGGGGCTTGAAATA 60.025 50.000 0.00 0.00 43.42 1.40
891 892 1.272704 GGTCTCCAAGGGGCTTGAAAT 60.273 52.381 0.00 0.00 43.42 2.17
892 893 0.112412 GGTCTCCAAGGGGCTTGAAA 59.888 55.000 0.00 0.00 43.42 2.69
893 894 1.767692 GGTCTCCAAGGGGCTTGAA 59.232 57.895 0.00 0.00 43.42 2.69
894 895 2.592993 CGGTCTCCAAGGGGCTTGA 61.593 63.158 0.00 0.00 43.42 3.02
895 896 2.045926 CGGTCTCCAAGGGGCTTG 60.046 66.667 0.00 0.00 40.75 4.01
896 897 1.846124 TTCGGTCTCCAAGGGGCTT 60.846 57.895 0.00 0.00 0.00 4.35
897 898 2.203938 TTCGGTCTCCAAGGGGCT 60.204 61.111 0.00 0.00 0.00 5.19
898 899 2.046217 GTTCGGTCTCCAAGGGGC 60.046 66.667 0.00 0.00 0.00 5.80
899 900 2.264794 CGTTCGGTCTCCAAGGGG 59.735 66.667 0.00 0.00 0.00 4.79
900 901 2.264794 CCGTTCGGTCTCCAAGGG 59.735 66.667 2.82 0.00 0.00 3.95
901 902 2.434359 GCCGTTCGGTCTCCAAGG 60.434 66.667 12.81 0.00 0.00 3.61
902 903 1.446272 GAGCCGTTCGGTCTCCAAG 60.446 63.158 17.87 0.00 36.01 3.61
903 904 2.654877 GAGCCGTTCGGTCTCCAA 59.345 61.111 17.87 0.00 36.01 3.53
904 905 3.744719 CGAGCCGTTCGGTCTCCA 61.745 66.667 20.58 0.00 45.54 3.86
912 913 1.590259 GGAGCATCTCGAGCCGTTC 60.590 63.158 7.81 8.29 33.73 3.95
913 914 1.888436 TTGGAGCATCTCGAGCCGTT 61.888 55.000 7.81 0.00 33.73 4.44
914 915 2.290122 CTTGGAGCATCTCGAGCCGT 62.290 60.000 7.81 0.00 33.73 5.68
915 916 1.591059 CTTGGAGCATCTCGAGCCG 60.591 63.158 7.81 1.68 33.73 5.52
916 917 1.886777 GCTTGGAGCATCTCGAGCC 60.887 63.158 7.81 3.05 41.89 4.70
917 918 3.716585 GCTTGGAGCATCTCGAGC 58.283 61.111 7.81 0.00 41.89 5.03
927 928 3.965539 CTCCTGGCCGTGCTTGGAG 62.966 68.421 16.17 16.17 39.68 3.86
928 929 4.020617 CTCCTGGCCGTGCTTGGA 62.021 66.667 0.00 0.00 0.00 3.53
942 943 0.877743 GAAGTGAGTTTGCTGGCTCC 59.122 55.000 0.00 0.00 0.00 4.70
946 947 3.470709 TCTTCTGAAGTGAGTTTGCTGG 58.529 45.455 16.43 0.00 0.00 4.85
957 958 5.221621 GCAGGATAGGCTTATCTTCTGAAGT 60.222 44.000 19.51 7.37 36.67 3.01
961 962 4.888326 AGCAGGATAGGCTTATCTTCTG 57.112 45.455 14.76 14.37 38.81 3.02
1012 1013 4.268644 CCATGTTAGCACATTAGTCTGACG 59.731 45.833 1.52 0.00 41.16 4.35
1015 1016 5.065218 GGTTCCATGTTAGCACATTAGTCTG 59.935 44.000 0.00 0.00 41.16 3.51
1024 1025 4.757149 GGATATCAGGTTCCATGTTAGCAC 59.243 45.833 4.83 0.00 31.99 4.40
1040 1041 0.577916 AGGGGTGGATGGGGATATCA 59.422 55.000 4.83 0.00 0.00 2.15
1048 1049 3.164269 CCGGAGAGGGGTGGATGG 61.164 72.222 0.00 0.00 35.97 3.51
1051 1052 4.779733 GAGCCGGAGAGGGGTGGA 62.780 72.222 5.05 0.00 41.48 4.02
1075 1076 2.439507 TGAGAAAGATAGGGGCATGGAC 59.560 50.000 0.00 0.00 0.00 4.02
1076 1077 2.439507 GTGAGAAAGATAGGGGCATGGA 59.560 50.000 0.00 0.00 0.00 3.41
1077 1078 2.808202 CGTGAGAAAGATAGGGGCATGG 60.808 54.545 0.00 0.00 0.00 3.66
1078 1079 2.487934 CGTGAGAAAGATAGGGGCATG 58.512 52.381 0.00 0.00 0.00 4.06
1079 1080 1.417890 CCGTGAGAAAGATAGGGGCAT 59.582 52.381 0.00 0.00 0.00 4.40
1080 1081 0.830648 CCGTGAGAAAGATAGGGGCA 59.169 55.000 0.00 0.00 0.00 5.36
1081 1082 0.831307 ACCGTGAGAAAGATAGGGGC 59.169 55.000 0.00 0.00 0.00 5.80
1082 1083 3.958798 TCTTACCGTGAGAAAGATAGGGG 59.041 47.826 0.00 0.00 31.07 4.79
1083 1084 5.593010 CTTCTTACCGTGAGAAAGATAGGG 58.407 45.833 7.14 0.00 34.43 3.53
1130 1131 4.588854 TGTGTTACGTGCGCCGGT 62.589 61.111 19.73 13.33 42.24 5.28
1131 1132 2.883468 TTTGTGTTACGTGCGCCGG 61.883 57.895 19.73 0.00 42.24 6.13
1132 1133 1.719766 GTTTGTGTTACGTGCGCCG 60.720 57.895 15.25 15.25 44.03 6.46
1133 1134 1.369568 GGTTTGTGTTACGTGCGCC 60.370 57.895 4.18 0.00 0.00 6.53
1134 1135 0.926628 GTGGTTTGTGTTACGTGCGC 60.927 55.000 0.00 0.00 0.00 6.09
1135 1136 0.653636 AGTGGTTTGTGTTACGTGCG 59.346 50.000 0.00 0.00 0.00 5.34
1136 1137 2.608546 TGTAGTGGTTTGTGTTACGTGC 59.391 45.455 0.00 0.00 0.00 5.34
1137 1138 3.301963 CGTGTAGTGGTTTGTGTTACGTG 60.302 47.826 0.00 0.00 0.00 4.49
1138 1139 2.859538 CGTGTAGTGGTTTGTGTTACGT 59.140 45.455 0.00 0.00 0.00 3.57
1139 1140 2.347846 GCGTGTAGTGGTTTGTGTTACG 60.348 50.000 0.00 0.00 0.00 3.18
1140 1141 2.347846 CGCGTGTAGTGGTTTGTGTTAC 60.348 50.000 0.00 0.00 0.00 2.50
1141 1142 1.859703 CGCGTGTAGTGGTTTGTGTTA 59.140 47.619 0.00 0.00 0.00 2.41
1142 1143 0.653636 CGCGTGTAGTGGTTTGTGTT 59.346 50.000 0.00 0.00 0.00 3.32
1143 1144 1.768112 GCGCGTGTAGTGGTTTGTGT 61.768 55.000 8.43 0.00 0.00 3.72
1144 1145 1.083015 GCGCGTGTAGTGGTTTGTG 60.083 57.895 8.43 0.00 0.00 3.33
1165 1166 4.302455 CGGTCATGGATGTTTAGCTCTAG 58.698 47.826 0.00 0.00 0.00 2.43
1166 1167 3.492656 GCGGTCATGGATGTTTAGCTCTA 60.493 47.826 0.00 0.00 0.00 2.43
1167 1168 2.743183 GCGGTCATGGATGTTTAGCTCT 60.743 50.000 0.00 0.00 0.00 4.09
1168 1169 1.599542 GCGGTCATGGATGTTTAGCTC 59.400 52.381 0.00 0.00 0.00 4.09
1169 1170 1.668419 GCGGTCATGGATGTTTAGCT 58.332 50.000 0.00 0.00 0.00 3.32
1170 1171 0.663153 GGCGGTCATGGATGTTTAGC 59.337 55.000 0.00 0.00 0.00 3.09
1171 1172 1.670811 GTGGCGGTCATGGATGTTTAG 59.329 52.381 0.00 0.00 0.00 1.85
1176 1177 0.664761 GAATGTGGCGGTCATGGATG 59.335 55.000 0.00 0.00 0.00 3.51
1178 1179 1.449423 CGAATGTGGCGGTCATGGA 60.449 57.895 0.00 0.00 0.00 3.41
1179 1180 3.101209 CGAATGTGGCGGTCATGG 58.899 61.111 0.00 0.00 0.00 3.66
1180 1181 2.404789 GCGAATGTGGCGGTCATG 59.595 61.111 0.00 0.00 0.00 3.07
1190 1194 2.431942 GACGGTGGTCGCGAATGT 60.432 61.111 12.06 4.87 43.89 2.71
1204 1208 4.838486 GACAGAGAGGCCGCGACG 62.838 72.222 8.23 0.00 0.00 5.12
1424 1428 3.479269 GTTCTTGAGCGACGGCGG 61.479 66.667 15.06 0.00 46.35 6.13
1657 1661 5.493133 AGTTAACAACGATTTGAGCACAA 57.507 34.783 8.61 0.00 36.48 3.33
1679 1683 1.318576 TCAAGCGATCGAGCAGGATA 58.681 50.000 21.57 0.00 40.15 2.59
1680 1684 0.678395 ATCAAGCGATCGAGCAGGAT 59.322 50.000 21.57 10.47 40.15 3.24
1768 1772 5.392595 GGTTAAAAAGACAGTGTGCAAGTCA 60.393 40.000 0.00 0.00 34.80 3.41
1810 1855 6.993079 AGATGCTCATAATTGTCCGTATGTA 58.007 36.000 0.00 0.00 0.00 2.29
1819 1874 3.494626 CGCCGTTAGATGCTCATAATTGT 59.505 43.478 0.00 0.00 0.00 2.71
1899 1955 2.295070 GGAGATTAAGGAGGAGACGAGC 59.705 54.545 0.00 0.00 0.00 5.03
1950 2006 9.720769 AGACGGATTTATAATTACGAATTCCAT 57.279 29.630 16.74 7.12 32.38 3.41
1957 2013 8.019669 GCTAGACAGACGGATTTATAATTACGA 58.980 37.037 16.74 0.00 0.00 3.43
1968 2024 3.561143 AGAGATGCTAGACAGACGGATT 58.439 45.455 0.00 0.00 0.00 3.01
1975 2031 6.150976 CCATTAGGAGTAGAGATGCTAGACAG 59.849 46.154 0.00 0.00 36.89 3.51
2009 2065 2.526432 AGACCCTGAAAGCGAGACTAA 58.474 47.619 0.00 0.00 0.00 2.24
2021 2077 1.133363 TGGGACGAAAAAGACCCTGA 58.867 50.000 0.00 0.00 44.60 3.86
2028 2084 4.218417 ACCATGAAAGATGGGACGAAAAAG 59.782 41.667 5.70 0.00 43.32 2.27
2061 2121 2.445614 AGCGAAGGTGGGAGGAGA 59.554 61.111 0.00 0.00 36.17 3.71
2120 2183 3.181528 TGTGACGCGAAAATAAACCGATC 60.182 43.478 15.93 0.00 0.00 3.69
2142 2205 5.360591 AGATTTCTTTCGTTGTGTGAGACT 58.639 37.500 0.00 0.00 0.00 3.24
2143 2206 5.659048 AGATTTCTTTCGTTGTGTGAGAC 57.341 39.130 0.00 0.00 0.00 3.36
2166 2229 8.611757 GCCAGTATGAAAAGTTTTGATTTGTTT 58.388 29.630 5.36 0.00 39.69 2.83
2171 2234 4.923281 GCGCCAGTATGAAAAGTTTTGATT 59.077 37.500 5.36 0.00 39.69 2.57
2183 2246 5.424757 ACTAAATAACTTGCGCCAGTATGA 58.575 37.500 15.26 4.00 39.69 2.15
2495 2558 4.129737 CCGTCGCGACCCAGTGAT 62.130 66.667 31.84 0.00 32.89 3.06
2671 2758 2.664851 TTCCAAGTGCGTCTGCCG 60.665 61.111 0.00 0.00 41.78 5.69
2672 2759 2.970974 GCTTCCAAGTGCGTCTGCC 61.971 63.158 0.00 0.00 41.78 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.