Multiple sequence alignment - TraesCS4D01G168700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G168700 chr4D 100.000 5765 0 0 1 5765 293550063 293544299 0.000000e+00 10647
1 TraesCS4D01G168700 chr4D 85.811 148 18 3 5587 5732 81337416 81337562 2.780000e-33 154
2 TraesCS4D01G168700 chr4A 96.519 2844 76 10 832 3660 323051453 323048618 0.000000e+00 4682
3 TraesCS4D01G168700 chr4A 96.073 1324 41 4 3659 4974 323048536 323047216 0.000000e+00 2146
4 TraesCS4D01G168700 chr4A 84.275 407 42 11 5071 5467 323046838 323046444 1.520000e-100 377
5 TraesCS4D01G168700 chr4B 96.456 2314 58 16 897 3198 291886122 291888423 0.000000e+00 3797
6 TraesCS4D01G168700 chr4B 96.358 2114 61 8 3198 5297 291892491 291894602 0.000000e+00 3463
7 TraesCS4D01G168700 chr4B 89.642 531 29 11 330 836 163312280 163312808 0.000000e+00 652
8 TraesCS4D01G168700 chr4B 88.657 335 24 7 1 331 163311872 163312196 4.190000e-106 396
9 TraesCS4D01G168700 chr5A 90.414 532 27 10 330 840 10318027 10318555 0.000000e+00 678
10 TraesCS4D01G168700 chr5A 94.667 150 8 0 182 331 10317794 10317943 3.470000e-57 233
11 TraesCS4D01G168700 chr5A 94.444 144 6 1 1 142 10317652 10317795 2.700000e-53 220
12 TraesCS4D01G168700 chr5A 87.861 173 20 1 92 264 54285106 54284935 9.790000e-48 202
13 TraesCS4D01G168700 chr2B 89.662 532 28 12 330 836 450761917 450761388 0.000000e+00 652
14 TraesCS4D01G168700 chr2B 89.820 334 21 6 1 331 450762324 450762001 3.210000e-112 416
15 TraesCS4D01G168700 chr2B 89.116 147 14 1 5588 5732 137262227 137262373 1.280000e-41 182
16 TraesCS4D01G168700 chr3B 89.474 532 29 13 330 837 592616992 592616464 0.000000e+00 647
17 TraesCS4D01G168700 chr3B 89.820 334 21 6 1 331 592617399 592617076 3.210000e-112 416
18 TraesCS4D01G168700 chr5B 86.364 242 29 3 93 331 147434265 147434505 1.590000e-65 261
19 TraesCS4D01G168700 chrUn 86.996 223 26 2 93 313 359341006 359341227 1.240000e-61 248
20 TraesCS4D01G168700 chrUn 92.308 156 12 0 683 838 359340113 359340268 7.520000e-54 222
21 TraesCS4D01G168700 chr1A 86.996 223 26 2 93 313 562047036 562047257 1.240000e-61 248
22 TraesCS4D01G168700 chr1A 92.308 156 12 0 683 838 562049982 562050137 7.520000e-54 222
23 TraesCS4D01G168700 chr1D 83.482 224 31 4 93 313 61328074 61327854 2.720000e-48 204
24 TraesCS4D01G168700 chr1D 89.677 155 15 1 683 837 61326972 61326819 4.560000e-46 196
25 TraesCS4D01G168700 chr5D 91.781 146 11 1 5587 5732 370661717 370661861 9.790000e-48 202
26 TraesCS4D01G168700 chr7D 89.189 148 13 3 5587 5732 31577452 31577306 1.280000e-41 182
27 TraesCS4D01G168700 chr3D 89.189 148 12 4 5587 5732 532168330 532168185 1.280000e-41 182
28 TraesCS4D01G168700 chr2D 87.838 148 14 4 5587 5732 154827149 154827294 2.760000e-38 171
29 TraesCS4D01G168700 chr6D 87.162 148 17 2 5587 5732 357785088 357784941 3.570000e-37 167
30 TraesCS4D01G168700 chr1B 85.714 154 12 9 5587 5732 550370080 550369929 2.780000e-33 154
31 TraesCS4D01G168700 chr1B 85.811 148 16 5 5587 5732 360372555 360372411 1.000000e-32 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G168700 chr4D 293544299 293550063 5764 True 10647.000000 10647 100.0000 1 5765 1 chr4D.!!$R1 5764
1 TraesCS4D01G168700 chr4A 323046444 323051453 5009 True 2401.666667 4682 92.2890 832 5467 3 chr4A.!!$R1 4635
2 TraesCS4D01G168700 chr4B 291886122 291888423 2301 False 3797.000000 3797 96.4560 897 3198 1 chr4B.!!$F1 2301
3 TraesCS4D01G168700 chr4B 291892491 291894602 2111 False 3463.000000 3463 96.3580 3198 5297 1 chr4B.!!$F2 2099
4 TraesCS4D01G168700 chr4B 163311872 163312808 936 False 524.000000 652 89.1495 1 836 2 chr4B.!!$F3 835
5 TraesCS4D01G168700 chr5A 10317652 10318555 903 False 377.000000 678 93.1750 1 840 3 chr5A.!!$F1 839
6 TraesCS4D01G168700 chr2B 450761388 450762324 936 True 534.000000 652 89.7410 1 836 2 chr2B.!!$R1 835
7 TraesCS4D01G168700 chr3B 592616464 592617399 935 True 531.500000 647 89.6470 1 837 2 chr3B.!!$R1 836
8 TraesCS4D01G168700 chrUn 359340113 359341227 1114 False 235.000000 248 89.6520 93 838 2 chrUn.!!$F1 745
9 TraesCS4D01G168700 chr1A 562047036 562050137 3101 False 235.000000 248 89.6520 93 838 2 chr1A.!!$F1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 4078 1.028905 TCTTTGCTGTTCCGTTTGGG 58.971 50.0 0.0 0.00 35.24 4.12 F
1856 5066 0.523519 GTTCTAGCAGCTTTGGTGGC 59.476 55.0 0.0 0.00 0.00 5.01 F
2695 5921 0.249826 GATGGCAGCAGCTCCTACTC 60.250 60.0 0.0 3.94 41.70 2.59 F
4429 7739 0.935898 GCAGATCACCAGCAAGATCG 59.064 55.0 0.0 0.00 44.10 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 5601 1.211949 AGGTGGTGGTAAATGATCGGG 59.788 52.381 0.00 0.0 0.00 5.14 R
3517 6744 1.531149 ACGTCCTTTTGATGCTGAACG 59.469 47.619 0.00 0.0 32.89 3.95 R
4623 7934 0.110644 GCTTGGACTGCGTTTCTTCG 60.111 55.000 0.00 0.0 0.00 3.79 R
5305 8912 0.033504 TCTTCAAAAGAGACGCGCCT 59.966 50.000 5.73 0.0 32.71 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.747355 GAGTGTCAATCCAATGGCCTG 59.253 52.381 3.32 0.00 0.00 4.85
53 54 3.541071 TTCGCATCAACAGTGTCATTG 57.459 42.857 0.00 0.00 0.00 2.82
54 55 2.493035 TCGCATCAACAGTGTCATTGT 58.507 42.857 0.00 0.00 0.00 2.71
57 58 4.043750 CGCATCAACAGTGTCATTGTTTT 58.956 39.130 10.75 0.16 36.67 2.43
58 59 5.008118 TCGCATCAACAGTGTCATTGTTTTA 59.992 36.000 10.75 3.71 36.67 1.52
59 60 5.115472 CGCATCAACAGTGTCATTGTTTTAC 59.885 40.000 10.75 1.75 36.67 2.01
61 62 6.360681 GCATCAACAGTGTCATTGTTTTACTC 59.639 38.462 10.75 0.00 36.67 2.59
62 63 7.642669 CATCAACAGTGTCATTGTTTTACTCT 58.357 34.615 10.75 0.00 36.67 3.24
63 64 8.773645 CATCAACAGTGTCATTGTTTTACTCTA 58.226 33.333 10.75 0.00 36.67 2.43
64 65 8.365399 TCAACAGTGTCATTGTTTTACTCTAG 57.635 34.615 10.75 0.00 36.67 2.43
66 67 8.491152 CAACAGTGTCATTGTTTTACTCTAGAG 58.509 37.037 18.49 18.49 36.67 2.43
67 68 7.952671 ACAGTGTCATTGTTTTACTCTAGAGA 58.047 34.615 26.57 7.25 0.00 3.10
68 69 8.421784 ACAGTGTCATTGTTTTACTCTAGAGAA 58.578 33.333 26.57 12.78 0.00 2.87
69 70 9.261180 CAGTGTCATTGTTTTACTCTAGAGAAA 57.739 33.333 26.57 17.45 0.00 2.52
86 87 9.047371 TCTAGAGAAATCTAGGATATTATCGCG 57.953 37.037 0.00 0.00 39.95 5.87
88 89 7.476667 AGAGAAATCTAGGATATTATCGCGTG 58.523 38.462 5.77 0.00 0.00 5.34
89 90 6.037098 AGAAATCTAGGATATTATCGCGTGC 58.963 40.000 5.77 0.00 0.00 5.34
90 91 3.777465 TCTAGGATATTATCGCGTGCC 57.223 47.619 5.77 0.00 0.00 5.01
91 92 3.353557 TCTAGGATATTATCGCGTGCCT 58.646 45.455 5.77 6.21 0.00 4.75
177 983 3.256960 TCCACCTGTCCCCAAGGC 61.257 66.667 0.00 0.00 0.00 4.35
178 984 3.260100 CCACCTGTCCCCAAGGCT 61.260 66.667 0.00 0.00 0.00 4.58
179 985 2.845345 CCACCTGTCCCCAAGGCTT 61.845 63.158 0.00 0.00 0.00 4.35
180 986 1.497309 CCACCTGTCCCCAAGGCTTA 61.497 60.000 0.00 0.00 0.00 3.09
206 1012 2.900546 AGAACTTTCACGTGAGGATCCT 59.099 45.455 16.13 16.13 0.00 3.24
222 1028 6.070021 TGAGGATCCTGTTATCTGTTGTGAAT 60.070 38.462 22.02 0.00 0.00 2.57
331 1181 2.103601 GCTCCATAGCGGTTTACCCTTA 59.896 50.000 0.00 0.00 39.39 2.69
332 1182 3.244457 GCTCCATAGCGGTTTACCCTTAT 60.244 47.826 0.00 0.00 39.39 1.73
333 1183 4.315803 CTCCATAGCGGTTTACCCTTATG 58.684 47.826 0.00 8.99 35.57 1.90
334 1184 3.712733 TCCATAGCGGTTTACCCTTATGT 59.287 43.478 0.00 0.00 35.57 2.29
335 1185 3.813166 CCATAGCGGTTTACCCTTATGTG 59.187 47.826 0.00 5.07 31.83 3.21
336 1186 1.746470 AGCGGTTTACCCTTATGTGC 58.254 50.000 0.00 0.00 0.00 4.57
343 1280 5.924825 CGGTTTACCCTTATGTGCTAGATAC 59.075 44.000 0.00 0.00 0.00 2.24
363 1300 8.991243 AGATACAAATGTTCAAACAATCCATG 57.009 30.769 0.00 0.00 43.03 3.66
597 1580 6.370166 TGCGAAACTATATTTCATGACACACA 59.630 34.615 0.00 0.00 0.00 3.72
633 1616 3.487120 AGTGAAAGTAAAACGAGGCCT 57.513 42.857 3.86 3.86 0.00 5.19
642 1629 1.247567 AAACGAGGCCTTCAACCATG 58.752 50.000 6.77 0.00 0.00 3.66
681 3882 2.237643 TGCACCATTGTGTGTTATGCT 58.762 42.857 0.00 0.00 44.65 3.79
873 4078 1.028905 TCTTTGCTGTTCCGTTTGGG 58.971 50.000 0.00 0.00 35.24 4.12
900 4105 1.072331 AGACGGACCATGCTCTGTTTT 59.928 47.619 3.99 0.00 29.32 2.43
915 4120 1.818060 TGTTTTGATTGGGGAGATGCG 59.182 47.619 0.00 0.00 0.00 4.73
992 4197 1.747325 GCCCTTCTTTGGTTGCAGCA 61.747 55.000 2.05 0.00 0.00 4.41
1272 4477 4.058817 ACCGTTGTGCAAAAAGAAAACAA 58.941 34.783 3.89 0.00 0.00 2.83
1279 4484 6.886307 TGTGCAAAAAGAAAACAAAGACAAG 58.114 32.000 0.00 0.00 0.00 3.16
1293 4498 8.819643 AACAAAGACAAGAGAAGTATAGTGAC 57.180 34.615 0.00 0.00 0.00 3.67
1321 4526 2.338577 GCTGATGCCTCATGTACCTT 57.661 50.000 0.00 0.00 0.00 3.50
1322 4527 2.216898 GCTGATGCCTCATGTACCTTC 58.783 52.381 0.00 0.00 0.00 3.46
1323 4528 2.843701 CTGATGCCTCATGTACCTTCC 58.156 52.381 0.00 0.00 0.00 3.46
1324 4529 2.171237 CTGATGCCTCATGTACCTTCCA 59.829 50.000 0.00 0.00 0.00 3.53
1518 4724 8.836413 GCTATGCTTTTGTTGAGGTAATATACA 58.164 33.333 0.00 0.00 0.00 2.29
1543 4749 4.749099 CCTAATGCTCTTGATAGTGCTCAC 59.251 45.833 0.00 0.00 40.62 3.51
1561 4767 4.094146 GCTCACTCTATTTTGTTCTCCTGC 59.906 45.833 0.00 0.00 0.00 4.85
1585 4794 6.037500 GCTGAGACATCATTGCTGTATACAAA 59.962 38.462 7.06 0.00 34.12 2.83
1615 4825 8.019669 GGCACAAACTGATGATAAGCTTATATG 58.980 37.037 18.87 9.73 0.00 1.78
1666 4876 1.364626 CGAAGATGCCTGTGCTGGAC 61.365 60.000 0.00 0.00 38.71 4.02
1677 4887 1.383943 TGCTGGACGGGATGGGTAT 60.384 57.895 0.00 0.00 0.00 2.73
1707 4917 6.094464 TCGATGGAAATCGTCTAAGAGTAACA 59.906 38.462 7.87 0.00 43.85 2.41
1856 5066 0.523519 GTTCTAGCAGCTTTGGTGGC 59.476 55.000 0.00 0.00 0.00 5.01
1924 5149 3.078837 ACCGTGGTATGGCTTTTTACAG 58.921 45.455 0.00 0.00 0.00 2.74
2219 5444 3.645884 CCTGATTTTGAGCACACCTTTG 58.354 45.455 0.00 0.00 0.00 2.77
2376 5601 3.600388 CCATCTAACCCTCAACTCACAC 58.400 50.000 0.00 0.00 0.00 3.82
2558 5784 8.087982 TGCTTAATCAAGTCTGACAAAACTAG 57.912 34.615 10.88 0.00 33.30 2.57
2695 5921 0.249826 GATGGCAGCAGCTCCTACTC 60.250 60.000 0.00 3.94 41.70 2.59
2786 6012 7.476667 TGCATTTACTACCATACCATTTTTCG 58.523 34.615 0.00 0.00 0.00 3.46
3023 6249 2.942376 TGCTGGTACTAATTTGGATGCG 59.058 45.455 0.00 0.00 0.00 4.73
3517 6744 2.563620 AGGTCTCTTTCTTCCCGTTCTC 59.436 50.000 0.00 0.00 0.00 2.87
3641 6868 4.716784 ACAACATGATCTAGGCTTCCTGTA 59.283 41.667 0.00 0.00 34.61 2.74
3709 7019 8.885494 AGCTTGCTAATTTGAAAACAATTGTA 57.115 26.923 12.39 0.00 0.00 2.41
3832 7142 3.622612 CACATGATAATGTCGGACTGCAA 59.377 43.478 9.88 0.00 31.37 4.08
3875 7185 6.408858 ACTCAGTTTATGCTACAAACGATG 57.591 37.500 0.00 0.00 40.14 3.84
3985 7295 7.094463 GGATATTGAGGATGGAATTTGCTACAG 60.094 40.741 0.00 0.00 0.00 2.74
4012 7322 3.452755 TGGTTGTATGAGGTATGCTCG 57.547 47.619 0.00 0.00 0.00 5.03
4055 7365 7.836842 TGGAAAGCTAAAATCACCCTATTTTC 58.163 34.615 0.00 0.00 39.27 2.29
4367 7677 8.193438 GCTTTTTGGACTCAAGCTGATATAAAT 58.807 33.333 0.00 0.00 39.92 1.40
4429 7739 0.935898 GCAGATCACCAGCAAGATCG 59.064 55.000 0.00 0.00 44.10 3.69
4776 8087 3.969287 TCTGAATAGAAGCACTGCACT 57.031 42.857 3.30 5.01 0.00 4.40
4901 8220 4.023707 AGTGTCAACTTGTATTGCTGAAGC 60.024 41.667 0.00 0.00 35.63 3.86
4937 8256 1.938577 CTATCATATGCGATGCCTGCC 59.061 52.381 0.00 0.00 0.00 4.85
5030 8432 3.603770 GCAAGACGTTTGTGTATTCATGC 59.396 43.478 10.65 0.00 0.00 4.06
5052 8454 4.387862 GCTTCATGCTTTTTCTCACCAATG 59.612 41.667 0.00 0.00 38.95 2.82
5075 8676 5.467399 TGTTCCTGTTACCATCGTTTTACAG 59.533 40.000 0.00 0.00 34.32 2.74
5079 8680 4.554292 TGTTACCATCGTTTTACAGCGTA 58.446 39.130 0.00 0.00 0.00 4.42
5118 8719 8.689251 TCGTACTCTGTTCTGAATTAATTGAG 57.311 34.615 5.17 6.89 0.00 3.02
5141 8742 7.093727 TGAGGTTCTAGATTTGTCCTAAGTCAG 60.094 40.741 0.00 0.00 0.00 3.51
5212 8813 8.587952 ACACCAGCTTAAAATACATTTTTGTC 57.412 30.769 5.32 0.00 40.24 3.18
5300 8907 2.833631 CCCTATAAGGCCTTGTACGG 57.166 55.000 28.77 22.64 32.73 4.02
5302 8909 2.224209 CCCTATAAGGCCTTGTACGGTG 60.224 54.545 28.77 13.02 32.73 4.94
5303 8910 2.433239 CCTATAAGGCCTTGTACGGTGT 59.567 50.000 28.77 0.00 0.00 4.16
5304 8911 3.638160 CCTATAAGGCCTTGTACGGTGTA 59.362 47.826 28.77 4.58 0.00 2.90
5305 8912 4.099881 CCTATAAGGCCTTGTACGGTGTAA 59.900 45.833 28.77 3.74 0.00 2.41
5306 8913 2.467566 AAGGCCTTGTACGGTGTAAG 57.532 50.000 19.73 0.00 0.00 2.34
5309 8916 2.745728 CCTTGTACGGTGTAAGGCG 58.254 57.895 10.86 0.00 35.06 5.52
5310 8917 1.356527 CCTTGTACGGTGTAAGGCGC 61.357 60.000 0.00 0.00 35.06 6.53
5311 8918 1.680105 CTTGTACGGTGTAAGGCGCG 61.680 60.000 0.00 0.00 0.00 6.86
5312 8919 2.126346 GTACGGTGTAAGGCGCGT 60.126 61.111 8.43 0.00 0.00 6.01
5313 8920 2.154569 GTACGGTGTAAGGCGCGTC 61.155 63.158 0.21 0.21 0.00 5.19
5314 8921 2.334946 TACGGTGTAAGGCGCGTCT 61.335 57.895 7.80 7.80 0.00 4.18
5315 8922 2.257286 TACGGTGTAAGGCGCGTCTC 62.257 60.000 16.36 2.18 0.00 3.36
5316 8923 2.572284 GGTGTAAGGCGCGTCTCT 59.428 61.111 16.36 7.21 0.00 3.10
5317 8924 1.080025 GGTGTAAGGCGCGTCTCTT 60.080 57.895 16.36 14.70 0.00 2.85
5318 8925 0.669625 GGTGTAAGGCGCGTCTCTTT 60.670 55.000 16.36 0.00 0.00 2.52
5330 8937 4.091509 GCGCGTCTCTTTTGAAGAAATAGA 59.908 41.667 8.43 0.00 37.02 1.98
5378 8987 9.678941 GTTTATTTTTCCAAACACCTCTCTAAG 57.321 33.333 0.00 0.00 0.00 2.18
5379 8988 5.767816 TTTTTCCAAACACCTCTCTAAGC 57.232 39.130 0.00 0.00 0.00 3.09
5386 8995 5.491982 CAAACACCTCTCTAAGCACCTAAT 58.508 41.667 0.00 0.00 0.00 1.73
5424 9033 0.885879 GGCGGACCCTTAAACCTTTG 59.114 55.000 0.00 0.00 0.00 2.77
5427 9036 2.876892 GCGGACCCTTAAACCTTTGCTA 60.877 50.000 0.00 0.00 0.00 3.49
5434 9043 7.201794 GGACCCTTAAACCTTTGCTATATGTTC 60.202 40.741 0.00 0.00 0.00 3.18
5436 9045 6.540914 CCCTTAAACCTTTGCTATATGTTCGA 59.459 38.462 0.00 0.00 0.00 3.71
5437 9046 7.228706 CCCTTAAACCTTTGCTATATGTTCGAT 59.771 37.037 0.00 0.00 0.00 3.59
5438 9047 8.070171 CCTTAAACCTTTGCTATATGTTCGATG 58.930 37.037 0.00 0.00 0.00 3.84
5439 9048 6.377327 AAACCTTTGCTATATGTTCGATGG 57.623 37.500 0.00 0.00 0.00 3.51
5461 9071 4.441792 GCCACTTTTGCCATTTAATAGGG 58.558 43.478 0.00 0.00 0.00 3.53
5467 9077 6.897413 ACTTTTGCCATTTAATAGGGATCTGT 59.103 34.615 0.00 0.00 0.00 3.41
5468 9078 8.058847 ACTTTTGCCATTTAATAGGGATCTGTA 58.941 33.333 0.00 0.00 0.00 2.74
5469 9079 9.082313 CTTTTGCCATTTAATAGGGATCTGTAT 57.918 33.333 0.00 0.00 0.00 2.29
5472 9082 9.685276 TTGCCATTTAATAGGGATCTGTATATG 57.315 33.333 0.00 0.00 0.00 1.78
5473 9083 7.775093 TGCCATTTAATAGGGATCTGTATATGC 59.225 37.037 0.00 0.00 0.00 3.14
5474 9084 7.229506 GCCATTTAATAGGGATCTGTATATGCC 59.770 40.741 0.00 0.00 37.61 4.40
5475 9085 7.721399 CCATTTAATAGGGATCTGTATATGCCC 59.279 40.741 0.00 0.00 38.07 5.36
5476 9086 6.479972 TTAATAGGGATCTGTATATGCCCG 57.520 41.667 0.00 0.00 43.64 6.13
5477 9087 0.905357 AGGGATCTGTATATGCCCGC 59.095 55.000 0.00 0.00 43.64 6.13
5478 9088 0.905357 GGGATCTGTATATGCCCGCT 59.095 55.000 0.00 0.00 31.46 5.52
5479 9089 1.279271 GGGATCTGTATATGCCCGCTT 59.721 52.381 0.00 0.00 31.46 4.68
5480 9090 2.622436 GGATCTGTATATGCCCGCTTC 58.378 52.381 0.00 0.00 0.00 3.86
5481 9091 2.263077 GATCTGTATATGCCCGCTTCG 58.737 52.381 0.00 0.00 0.00 3.79
5482 9092 0.319555 TCTGTATATGCCCGCTTCGC 60.320 55.000 0.00 0.00 0.00 4.70
5483 9093 0.599991 CTGTATATGCCCGCTTCGCA 60.600 55.000 0.00 0.00 41.28 5.10
5484 9094 0.599991 TGTATATGCCCGCTTCGCAG 60.600 55.000 0.00 0.00 40.15 5.18
5485 9095 0.600255 GTATATGCCCGCTTCGCAGT 60.600 55.000 0.00 0.00 40.15 4.40
5486 9096 0.963225 TATATGCCCGCTTCGCAGTA 59.037 50.000 0.00 0.00 40.15 2.74
5487 9097 0.600255 ATATGCCCGCTTCGCAGTAC 60.600 55.000 0.00 0.00 40.15 2.73
5488 9098 2.947118 TATGCCCGCTTCGCAGTACG 62.947 60.000 0.00 0.00 40.15 3.67
5502 9112 2.870411 GCAGTACGAATGTATGGGTTCC 59.130 50.000 0.00 0.00 32.11 3.62
5503 9113 3.120792 CAGTACGAATGTATGGGTTCCG 58.879 50.000 0.00 0.00 32.11 4.30
5504 9114 2.101917 AGTACGAATGTATGGGTTCCGG 59.898 50.000 0.00 0.00 32.11 5.14
5505 9115 0.906775 ACGAATGTATGGGTTCCGGT 59.093 50.000 0.00 0.00 0.00 5.28
5506 9116 2.109774 ACGAATGTATGGGTTCCGGTA 58.890 47.619 0.00 0.00 0.00 4.02
5507 9117 2.701951 ACGAATGTATGGGTTCCGGTAT 59.298 45.455 0.00 0.00 0.00 2.73
5508 9118 3.243975 ACGAATGTATGGGTTCCGGTATC 60.244 47.826 0.00 0.00 0.00 2.24
5509 9119 3.671716 GAATGTATGGGTTCCGGTATCC 58.328 50.000 2.81 2.81 0.00 2.59
5510 9120 2.177811 TGTATGGGTTCCGGTATCCA 57.822 50.000 16.25 16.25 0.00 3.41
5511 9121 2.479340 TGTATGGGTTCCGGTATCCAA 58.521 47.619 17.90 4.27 32.56 3.53
5512 9122 2.436542 TGTATGGGTTCCGGTATCCAAG 59.563 50.000 17.90 0.00 32.56 3.61
5513 9123 1.887797 ATGGGTTCCGGTATCCAAGA 58.112 50.000 17.90 0.00 32.56 3.02
5514 9124 1.200519 TGGGTTCCGGTATCCAAGAG 58.799 55.000 11.19 0.00 0.00 2.85
5515 9125 1.273381 TGGGTTCCGGTATCCAAGAGA 60.273 52.381 11.19 0.00 0.00 3.10
5516 9126 1.138464 GGGTTCCGGTATCCAAGAGAC 59.862 57.143 5.32 0.00 0.00 3.36
5517 9127 1.829222 GGTTCCGGTATCCAAGAGACA 59.171 52.381 0.00 0.00 0.00 3.41
5518 9128 2.235402 GGTTCCGGTATCCAAGAGACAA 59.765 50.000 0.00 0.00 0.00 3.18
5519 9129 3.307199 GGTTCCGGTATCCAAGAGACAAA 60.307 47.826 0.00 0.00 0.00 2.83
5520 9130 4.320870 GTTCCGGTATCCAAGAGACAAAA 58.679 43.478 0.00 0.00 0.00 2.44
5521 9131 4.202245 TCCGGTATCCAAGAGACAAAAG 57.798 45.455 0.00 0.00 0.00 2.27
5522 9132 3.581332 TCCGGTATCCAAGAGACAAAAGT 59.419 43.478 0.00 0.00 0.00 2.66
5523 9133 3.684788 CCGGTATCCAAGAGACAAAAGTG 59.315 47.826 0.00 0.00 0.00 3.16
5524 9134 3.684788 CGGTATCCAAGAGACAAAAGTGG 59.315 47.826 0.00 0.00 0.00 4.00
5525 9135 4.010349 GGTATCCAAGAGACAAAAGTGGG 58.990 47.826 0.00 0.00 0.00 4.61
5526 9136 2.656947 TCCAAGAGACAAAAGTGGGG 57.343 50.000 0.00 0.00 0.00 4.96
5527 9137 2.131854 TCCAAGAGACAAAAGTGGGGA 58.868 47.619 0.00 0.00 0.00 4.81
5528 9138 2.716424 TCCAAGAGACAAAAGTGGGGAT 59.284 45.455 0.00 0.00 0.00 3.85
5529 9139 3.140144 TCCAAGAGACAAAAGTGGGGATT 59.860 43.478 0.00 0.00 0.00 3.01
5530 9140 3.507622 CCAAGAGACAAAAGTGGGGATTC 59.492 47.826 0.00 0.00 0.00 2.52
5531 9141 3.441500 AGAGACAAAAGTGGGGATTCC 57.558 47.619 0.00 0.00 0.00 3.01
5532 9142 2.716424 AGAGACAAAAGTGGGGATTCCA 59.284 45.455 4.80 0.00 44.79 3.53
5542 9152 3.449746 TGGGGATTCCAGTACCAAAAG 57.550 47.619 4.80 0.00 41.46 2.27
5543 9153 2.990284 TGGGGATTCCAGTACCAAAAGA 59.010 45.455 4.80 0.00 41.46 2.52
5544 9154 3.245122 TGGGGATTCCAGTACCAAAAGAC 60.245 47.826 4.80 0.00 41.46 3.01
5545 9155 3.007635 GGGATTCCAGTACCAAAAGACG 58.992 50.000 4.80 0.00 0.00 4.18
5546 9156 3.307199 GGGATTCCAGTACCAAAAGACGA 60.307 47.826 4.80 0.00 0.00 4.20
5547 9157 4.320870 GGATTCCAGTACCAAAAGACGAA 58.679 43.478 0.00 0.00 0.00 3.85
5548 9158 4.153655 GGATTCCAGTACCAAAAGACGAAC 59.846 45.833 0.00 0.00 0.00 3.95
5549 9159 3.823281 TCCAGTACCAAAAGACGAACA 57.177 42.857 0.00 0.00 0.00 3.18
5550 9160 4.345859 TCCAGTACCAAAAGACGAACAT 57.654 40.909 0.00 0.00 0.00 2.71
5551 9161 4.062293 TCCAGTACCAAAAGACGAACATG 58.938 43.478 0.00 0.00 0.00 3.21
5552 9162 3.188460 CCAGTACCAAAAGACGAACATGG 59.812 47.826 0.00 0.00 37.19 3.66
5553 9163 3.188460 CAGTACCAAAAGACGAACATGGG 59.812 47.826 0.00 0.00 35.44 4.00
5554 9164 2.649531 ACCAAAAGACGAACATGGGA 57.350 45.000 0.00 0.00 35.44 4.37
5555 9165 3.154827 ACCAAAAGACGAACATGGGAT 57.845 42.857 0.00 0.00 35.44 3.85
5556 9166 3.496331 ACCAAAAGACGAACATGGGATT 58.504 40.909 0.00 0.00 35.44 3.01
5557 9167 3.895041 ACCAAAAGACGAACATGGGATTT 59.105 39.130 0.00 0.00 35.44 2.17
5558 9168 4.343814 ACCAAAAGACGAACATGGGATTTT 59.656 37.500 0.00 0.00 35.44 1.82
5559 9169 4.685628 CCAAAAGACGAACATGGGATTTTG 59.314 41.667 0.00 5.88 36.44 2.44
5560 9170 5.288804 CAAAAGACGAACATGGGATTTTGT 58.711 37.500 0.00 0.00 33.61 2.83
5561 9171 4.766404 AAGACGAACATGGGATTTTGTC 57.234 40.909 0.00 1.91 36.66 3.18
5562 9172 2.742053 AGACGAACATGGGATTTTGTCG 59.258 45.455 0.00 0.00 39.98 4.35
5563 9173 1.810151 ACGAACATGGGATTTTGTCGG 59.190 47.619 0.00 0.00 0.00 4.79
5564 9174 2.080693 CGAACATGGGATTTTGTCGGA 58.919 47.619 0.00 0.00 0.00 4.55
5565 9175 2.095853 CGAACATGGGATTTTGTCGGAG 59.904 50.000 0.00 0.00 0.00 4.63
5566 9176 2.879103 ACATGGGATTTTGTCGGAGT 57.121 45.000 0.00 0.00 0.00 3.85
5567 9177 2.711542 ACATGGGATTTTGTCGGAGTC 58.288 47.619 0.00 0.00 0.00 3.36
5568 9178 2.017049 CATGGGATTTTGTCGGAGTCC 58.983 52.381 0.00 0.00 0.00 3.85
5580 9190 1.852942 CGGAGTCCGGAATGTATGTG 58.147 55.000 24.39 0.00 44.15 3.21
5581 9191 1.583054 GGAGTCCGGAATGTATGTGC 58.417 55.000 10.26 0.00 0.00 4.57
5582 9192 1.583054 GAGTCCGGAATGTATGTGCC 58.417 55.000 10.26 0.00 0.00 5.01
5583 9193 0.908910 AGTCCGGAATGTATGTGCCA 59.091 50.000 5.23 0.00 0.00 4.92
5584 9194 1.490490 AGTCCGGAATGTATGTGCCAT 59.510 47.619 5.23 0.00 0.00 4.40
5585 9195 1.873591 GTCCGGAATGTATGTGCCATC 59.126 52.381 5.23 0.00 0.00 3.51
5586 9196 1.768275 TCCGGAATGTATGTGCCATCT 59.232 47.619 0.00 0.00 0.00 2.90
5587 9197 2.172505 TCCGGAATGTATGTGCCATCTT 59.827 45.455 0.00 0.00 0.00 2.40
5588 9198 2.951642 CCGGAATGTATGTGCCATCTTT 59.048 45.455 0.00 0.00 0.00 2.52
5589 9199 3.381272 CCGGAATGTATGTGCCATCTTTT 59.619 43.478 0.00 0.00 0.00 2.27
5590 9200 4.578516 CCGGAATGTATGTGCCATCTTTTA 59.421 41.667 0.00 0.00 0.00 1.52
5591 9201 5.277974 CCGGAATGTATGTGCCATCTTTTAG 60.278 44.000 0.00 0.00 0.00 1.85
5592 9202 5.527214 CGGAATGTATGTGCCATCTTTTAGA 59.473 40.000 0.00 0.00 0.00 2.10
5593 9203 6.293081 CGGAATGTATGTGCCATCTTTTAGAG 60.293 42.308 0.00 0.00 0.00 2.43
5594 9204 6.016777 GGAATGTATGTGCCATCTTTTAGAGG 60.017 42.308 0.00 0.00 0.00 3.69
5595 9205 5.692115 TGTATGTGCCATCTTTTAGAGGA 57.308 39.130 0.00 0.00 0.00 3.71
5596 9206 6.061022 TGTATGTGCCATCTTTTAGAGGAA 57.939 37.500 0.00 0.00 0.00 3.36
5597 9207 6.480763 TGTATGTGCCATCTTTTAGAGGAAA 58.519 36.000 0.00 0.00 0.00 3.13
5598 9208 6.599244 TGTATGTGCCATCTTTTAGAGGAAAG 59.401 38.462 0.00 0.00 37.85 2.62
5599 9209 4.335416 TGTGCCATCTTTTAGAGGAAAGG 58.665 43.478 0.00 0.00 37.27 3.11
5600 9210 3.129462 GTGCCATCTTTTAGAGGAAAGGC 59.871 47.826 0.00 0.00 37.27 4.35
5601 9211 3.245229 TGCCATCTTTTAGAGGAAAGGCA 60.245 43.478 9.71 9.71 41.17 4.75
5602 9212 3.956848 GCCATCTTTTAGAGGAAAGGCAT 59.043 43.478 7.15 0.00 37.27 4.40
5603 9213 4.202090 GCCATCTTTTAGAGGAAAGGCATG 60.202 45.833 7.15 0.00 37.27 4.06
5604 9214 4.202090 CCATCTTTTAGAGGAAAGGCATGC 60.202 45.833 9.90 9.90 37.27 4.06
5605 9215 3.009723 TCTTTTAGAGGAAAGGCATGCG 58.990 45.455 12.44 0.00 37.27 4.73
5606 9216 1.094785 TTTAGAGGAAAGGCATGCGC 58.905 50.000 12.44 0.00 37.44 6.09
5616 9226 3.420943 GCATGCGCCCGACTTTAT 58.579 55.556 4.18 0.00 0.00 1.40
5617 9227 2.612200 GCATGCGCCCGACTTTATA 58.388 52.632 4.18 0.00 0.00 0.98
5618 9228 0.941542 GCATGCGCCCGACTTTATAA 59.058 50.000 4.18 0.00 0.00 0.98
5619 9229 1.332375 GCATGCGCCCGACTTTATAAA 59.668 47.619 4.18 0.00 0.00 1.40
5620 9230 2.031157 GCATGCGCCCGACTTTATAAAT 60.031 45.455 4.18 0.00 0.00 1.40
5621 9231 3.187637 GCATGCGCCCGACTTTATAAATA 59.812 43.478 4.18 0.00 0.00 1.40
5622 9232 4.319911 GCATGCGCCCGACTTTATAAATAA 60.320 41.667 4.18 0.00 0.00 1.40
5623 9233 5.753744 CATGCGCCCGACTTTATAAATAAA 58.246 37.500 4.18 0.00 0.00 1.40
5653 9263 4.096732 GCAGGTAGCAAATACACAAAGG 57.903 45.455 0.00 0.00 44.79 3.11
5654 9264 3.506067 GCAGGTAGCAAATACACAAAGGT 59.494 43.478 0.00 0.00 44.79 3.50
5655 9265 4.022329 GCAGGTAGCAAATACACAAAGGTT 60.022 41.667 0.00 0.00 44.79 3.50
5656 9266 5.699839 CAGGTAGCAAATACACAAAGGTTC 58.300 41.667 0.00 0.00 35.96 3.62
5657 9267 5.240623 CAGGTAGCAAATACACAAAGGTTCA 59.759 40.000 0.00 0.00 35.96 3.18
5658 9268 5.830991 AGGTAGCAAATACACAAAGGTTCAA 59.169 36.000 0.00 0.00 35.96 2.69
5659 9269 6.016276 AGGTAGCAAATACACAAAGGTTCAAG 60.016 38.462 0.00 0.00 35.96 3.02
5660 9270 6.016610 GGTAGCAAATACACAAAGGTTCAAGA 60.017 38.462 0.00 0.00 35.96 3.02
5661 9271 5.831997 AGCAAATACACAAAGGTTCAAGAC 58.168 37.500 0.00 0.00 0.00 3.01
5662 9272 7.995611 GTAGCAAATACACAAAGGTTCAAGACC 60.996 40.741 0.00 0.00 40.37 3.85
5670 9280 3.505835 GGTTCAAGACCCACAACCA 57.494 52.632 0.00 0.00 43.06 3.67
5671 9281 1.318576 GGTTCAAGACCCACAACCAG 58.681 55.000 0.00 0.00 43.06 4.00
5672 9282 0.668535 GTTCAAGACCCACAACCAGC 59.331 55.000 0.00 0.00 0.00 4.85
5673 9283 0.257328 TTCAAGACCCACAACCAGCA 59.743 50.000 0.00 0.00 0.00 4.41
5674 9284 0.257328 TCAAGACCCACAACCAGCAA 59.743 50.000 0.00 0.00 0.00 3.91
5675 9285 0.670162 CAAGACCCACAACCAGCAAG 59.330 55.000 0.00 0.00 0.00 4.01
5676 9286 0.550914 AAGACCCACAACCAGCAAGA 59.449 50.000 0.00 0.00 0.00 3.02
5677 9287 0.179018 AGACCCACAACCAGCAAGAC 60.179 55.000 0.00 0.00 0.00 3.01
5678 9288 1.152756 ACCCACAACCAGCAAGACC 60.153 57.895 0.00 0.00 0.00 3.85
5679 9289 1.903404 CCCACAACCAGCAAGACCC 60.903 63.158 0.00 0.00 0.00 4.46
5680 9290 1.903404 CCACAACCAGCAAGACCCC 60.903 63.158 0.00 0.00 0.00 4.95
5681 9291 1.152777 CACAACCAGCAAGACCCCA 60.153 57.895 0.00 0.00 0.00 4.96
5682 9292 0.754957 CACAACCAGCAAGACCCCAA 60.755 55.000 0.00 0.00 0.00 4.12
5683 9293 0.755327 ACAACCAGCAAGACCCCAAC 60.755 55.000 0.00 0.00 0.00 3.77
5684 9294 1.152546 AACCAGCAAGACCCCAACC 60.153 57.895 0.00 0.00 0.00 3.77
5685 9295 1.943730 AACCAGCAAGACCCCAACCA 61.944 55.000 0.00 0.00 0.00 3.67
5686 9296 1.604593 CCAGCAAGACCCCAACCAG 60.605 63.158 0.00 0.00 0.00 4.00
5687 9297 1.604593 CAGCAAGACCCCAACCAGG 60.605 63.158 0.00 0.00 37.03 4.45
5698 9308 4.514585 AACCAGGGCCACACGCAA 62.515 61.111 6.18 0.00 40.31 4.85
5699 9309 4.954970 ACCAGGGCCACACGCAAG 62.955 66.667 6.18 0.00 40.31 4.01
5700 9310 4.641645 CCAGGGCCACACGCAAGA 62.642 66.667 6.18 0.00 40.31 3.02
5701 9311 3.052082 CAGGGCCACACGCAAGAG 61.052 66.667 6.18 0.00 40.31 2.85
5702 9312 3.241530 AGGGCCACACGCAAGAGA 61.242 61.111 6.18 0.00 40.31 3.10
5703 9313 2.743928 GGGCCACACGCAAGAGAG 60.744 66.667 4.39 0.00 40.31 3.20
5704 9314 2.031163 GGCCACACGCAAGAGAGT 59.969 61.111 0.00 0.00 40.31 3.24
5705 9315 1.598130 GGCCACACGCAAGAGAGTT 60.598 57.895 0.00 0.00 40.31 3.01
5706 9316 0.320421 GGCCACACGCAAGAGAGTTA 60.320 55.000 0.00 0.00 40.31 2.24
5707 9317 1.508632 GCCACACGCAAGAGAGTTAA 58.491 50.000 0.00 0.00 43.62 2.01
5708 9318 1.871039 GCCACACGCAAGAGAGTTAAA 59.129 47.619 0.00 0.00 43.62 1.52
5709 9319 2.289547 GCCACACGCAAGAGAGTTAAAA 59.710 45.455 0.00 0.00 43.62 1.52
5710 9320 3.607078 GCCACACGCAAGAGAGTTAAAAG 60.607 47.826 0.00 0.00 43.62 2.27
5711 9321 3.058914 CCACACGCAAGAGAGTTAAAAGG 60.059 47.826 0.00 0.00 43.62 3.11
5712 9322 3.058914 CACACGCAAGAGAGTTAAAAGGG 60.059 47.826 0.00 0.00 43.62 3.95
5713 9323 2.484264 CACGCAAGAGAGTTAAAAGGGG 59.516 50.000 0.00 0.00 43.62 4.79
5714 9324 2.370849 ACGCAAGAGAGTTAAAAGGGGA 59.629 45.455 0.00 0.00 43.62 4.81
5715 9325 3.009143 ACGCAAGAGAGTTAAAAGGGGAT 59.991 43.478 0.00 0.00 43.62 3.85
5716 9326 4.224370 ACGCAAGAGAGTTAAAAGGGGATA 59.776 41.667 0.00 0.00 43.62 2.59
5717 9327 4.571176 CGCAAGAGAGTTAAAAGGGGATAC 59.429 45.833 0.00 0.00 43.02 2.24
5718 9328 5.497474 GCAAGAGAGTTAAAAGGGGATACA 58.503 41.667 0.00 0.00 39.74 2.29
5719 9329 6.122964 GCAAGAGAGTTAAAAGGGGATACAT 58.877 40.000 0.00 0.00 39.74 2.29
5720 9330 6.038714 GCAAGAGAGTTAAAAGGGGATACATG 59.961 42.308 0.00 0.00 39.74 3.21
5721 9331 6.253946 AGAGAGTTAAAAGGGGATACATGG 57.746 41.667 0.00 0.00 39.74 3.66
5722 9332 4.793201 AGAGTTAAAAGGGGATACATGGC 58.207 43.478 0.00 0.00 39.74 4.40
5723 9333 4.478686 AGAGTTAAAAGGGGATACATGGCT 59.521 41.667 0.00 0.00 39.74 4.75
5724 9334 4.793201 AGTTAAAAGGGGATACATGGCTC 58.207 43.478 0.00 0.00 39.74 4.70
5725 9335 2.755952 AAAAGGGGATACATGGCTCC 57.244 50.000 7.17 7.17 39.74 4.70
5730 9340 0.615850 GGGATACATGGCTCCCTAGC 59.384 60.000 21.74 0.00 46.55 3.42
5747 9357 3.590824 CCGCAGGCCGAAAAGATT 58.409 55.556 0.00 0.00 46.14 2.40
5748 9358 2.775351 CCGCAGGCCGAAAAGATTA 58.225 52.632 0.00 0.00 46.14 1.75
5749 9359 0.377203 CCGCAGGCCGAAAAGATTAC 59.623 55.000 0.00 0.00 46.14 1.89
5750 9360 1.369625 CGCAGGCCGAAAAGATTACT 58.630 50.000 0.00 0.00 40.02 2.24
5751 9361 1.062587 CGCAGGCCGAAAAGATTACTG 59.937 52.381 0.00 0.00 40.02 2.74
5752 9362 2.084546 GCAGGCCGAAAAGATTACTGT 58.915 47.619 0.00 0.00 0.00 3.55
5753 9363 2.096013 GCAGGCCGAAAAGATTACTGTC 59.904 50.000 0.00 0.00 0.00 3.51
5754 9364 2.678336 CAGGCCGAAAAGATTACTGTCC 59.322 50.000 0.00 0.00 0.00 4.02
5755 9365 2.304761 AGGCCGAAAAGATTACTGTCCA 59.695 45.455 0.00 0.00 0.00 4.02
5756 9366 3.078837 GGCCGAAAAGATTACTGTCCAA 58.921 45.455 0.00 0.00 0.00 3.53
5757 9367 3.504520 GGCCGAAAAGATTACTGTCCAAA 59.495 43.478 0.00 0.00 0.00 3.28
5758 9368 4.022676 GGCCGAAAAGATTACTGTCCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
5759 9369 5.508320 GGCCGAAAAGATTACTGTCCAAAAA 60.508 40.000 0.00 0.00 0.00 1.94
5760 9370 5.629435 GCCGAAAAGATTACTGTCCAAAAAG 59.371 40.000 0.00 0.00 0.00 2.27
5761 9371 6.514376 GCCGAAAAGATTACTGTCCAAAAAGA 60.514 38.462 0.00 0.00 0.00 2.52
5762 9372 6.856426 CCGAAAAGATTACTGTCCAAAAAGAC 59.144 38.462 0.00 0.00 37.28 3.01
5763 9373 7.255139 CCGAAAAGATTACTGTCCAAAAAGACT 60.255 37.037 0.00 0.00 37.66 3.24
5764 9374 8.770828 CGAAAAGATTACTGTCCAAAAAGACTA 58.229 33.333 0.00 0.00 37.66 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 8.613482 CACGCGATAATATCCTAGATTTCTCTA 58.387 37.037 15.93 0.00 32.66 2.43
63 64 7.476667 CACGCGATAATATCCTAGATTTCTCT 58.523 38.462 15.93 0.00 35.39 3.10
64 65 6.197468 GCACGCGATAATATCCTAGATTTCTC 59.803 42.308 15.93 0.00 0.00 2.87
66 67 5.232414 GGCACGCGATAATATCCTAGATTTC 59.768 44.000 15.93 0.00 0.00 2.17
67 68 5.105310 AGGCACGCGATAATATCCTAGATTT 60.105 40.000 15.93 0.00 0.00 2.17
68 69 4.402793 AGGCACGCGATAATATCCTAGATT 59.597 41.667 15.93 0.00 0.00 2.40
69 70 3.954904 AGGCACGCGATAATATCCTAGAT 59.045 43.478 15.93 0.00 0.00 1.98
70 71 3.353557 AGGCACGCGATAATATCCTAGA 58.646 45.455 15.93 0.00 0.00 2.43
71 72 3.784701 AGGCACGCGATAATATCCTAG 57.215 47.619 15.93 0.00 0.00 3.02
72 73 4.011698 TGTAGGCACGCGATAATATCCTA 58.988 43.478 15.93 9.14 0.00 2.94
73 74 2.823747 TGTAGGCACGCGATAATATCCT 59.176 45.455 15.93 10.13 0.00 3.24
74 75 3.226346 TGTAGGCACGCGATAATATCC 57.774 47.619 15.93 2.42 0.00 2.59
75 76 3.612860 CCTTGTAGGCACGCGATAATATC 59.387 47.826 15.93 0.00 0.00 1.63
77 78 3.021269 CCTTGTAGGCACGCGATAATA 57.979 47.619 15.93 0.00 0.00 0.98
78 79 1.865865 CCTTGTAGGCACGCGATAAT 58.134 50.000 15.93 0.00 0.00 1.28
79 80 3.355816 CCTTGTAGGCACGCGATAA 57.644 52.632 15.93 0.00 0.00 1.75
89 90 1.065854 CCTGAGTTGAGGCCTTGTAGG 60.066 57.143 6.77 5.88 38.80 3.18
90 91 1.625818 ACCTGAGTTGAGGCCTTGTAG 59.374 52.381 6.77 0.00 36.46 2.74
91 92 1.729586 ACCTGAGTTGAGGCCTTGTA 58.270 50.000 6.77 0.00 36.46 2.41
177 983 5.175856 CCTCACGTGAAAGTTCTGAAGTAAG 59.824 44.000 20.49 1.54 0.00 2.34
178 984 5.047847 CCTCACGTGAAAGTTCTGAAGTAA 58.952 41.667 20.49 0.00 0.00 2.24
179 985 4.340097 TCCTCACGTGAAAGTTCTGAAGTA 59.660 41.667 20.49 0.00 0.00 2.24
180 986 3.132289 TCCTCACGTGAAAGTTCTGAAGT 59.868 43.478 20.49 0.00 0.00 3.01
206 1012 5.049749 CGTCACCAATTCACAACAGATAACA 60.050 40.000 0.00 0.00 0.00 2.41
222 1028 4.200874 ACTGGAATTTACAACGTCACCAA 58.799 39.130 0.00 0.00 0.00 3.67
331 1181 8.109705 TGTTTGAACATTTGTATCTAGCACAT 57.890 30.769 0.00 0.00 33.17 3.21
332 1182 7.503521 TGTTTGAACATTTGTATCTAGCACA 57.496 32.000 0.00 0.00 33.17 4.57
333 1183 8.970691 ATTGTTTGAACATTTGTATCTAGCAC 57.029 30.769 0.00 0.00 38.95 4.40
334 1184 8.243426 GGATTGTTTGAACATTTGTATCTAGCA 58.757 33.333 0.00 0.00 38.95 3.49
335 1185 8.243426 TGGATTGTTTGAACATTTGTATCTAGC 58.757 33.333 0.00 0.00 38.95 3.42
410 1352 4.279922 TGTCCTCGAGATCACTTTGTGTAA 59.720 41.667 15.71 0.00 34.79 2.41
411 1353 3.824443 TGTCCTCGAGATCACTTTGTGTA 59.176 43.478 15.71 0.00 34.79 2.90
417 1369 3.057174 GTCTTGTGTCCTCGAGATCACTT 60.057 47.826 27.01 0.00 31.55 3.16
515 1470 6.208840 TCCTCCTTTTACCACCATTAAGTT 57.791 37.500 0.00 0.00 0.00 2.66
633 1616 5.471797 TCGTTCTTTATGAAGCATGGTTGAA 59.528 36.000 16.18 8.21 35.01 2.69
642 1629 4.554973 GTGCAACATCGTTCTTTATGAAGC 59.445 41.667 0.00 0.00 33.71 3.86
690 3891 5.791336 AATGGGAACTCCTTGAAACTTTC 57.209 39.130 0.00 0.00 36.20 2.62
793 3998 5.674569 GCTTTGCACGACAGATCATTATGTT 60.675 40.000 0.00 0.00 0.00 2.71
873 4078 1.078426 CATGGTCCGTCTCCCCAAC 60.078 63.158 0.00 0.00 0.00 3.77
900 4105 2.756042 CCCCGCATCTCCCCAATCA 61.756 63.158 0.00 0.00 0.00 2.57
992 4197 2.771762 GCCTGCTCATCCCTCCCT 60.772 66.667 0.00 0.00 0.00 4.20
1272 4477 8.410673 TCAAGTCACTATACTTCTCTTGTCTT 57.589 34.615 0.00 0.00 37.61 3.01
1279 4484 6.096282 AGCCTTCTCAAGTCACTATACTTCTC 59.904 42.308 0.00 0.00 37.61 2.87
1287 4492 3.368843 GCATCAGCCTTCTCAAGTCACTA 60.369 47.826 0.00 0.00 33.58 2.74
1321 4526 4.289410 TGAGATTCAGGAAAGTTGGATGGA 59.711 41.667 0.00 0.00 0.00 3.41
1322 4527 4.592942 TGAGATTCAGGAAAGTTGGATGG 58.407 43.478 0.00 0.00 0.00 3.51
1323 4528 5.709164 ACTTGAGATTCAGGAAAGTTGGATG 59.291 40.000 0.00 0.00 0.00 3.51
1324 4529 5.885465 ACTTGAGATTCAGGAAAGTTGGAT 58.115 37.500 0.00 0.00 0.00 3.41
1354 4559 3.336509 ACTAGTACATCCTGGAGCCAT 57.663 47.619 1.52 0.00 0.00 4.40
1424 4630 5.371526 CCATACTACATGAACAAGGCTGAT 58.628 41.667 0.00 0.00 0.00 2.90
1518 4724 5.104776 TGAGCACTATCAAGAGCATTAGGTT 60.105 40.000 0.00 0.00 41.31 3.50
1561 4767 7.279536 ACTTTGTATACAGCAATGATGTCTCAG 59.720 37.037 7.64 0.00 33.09 3.35
1585 4794 2.592102 ATCATCAGTTTGTGCCCACT 57.408 45.000 0.00 0.00 0.00 4.00
1615 4825 8.718734 ACGAGGATCTTCAAACTACAAAATTAC 58.281 33.333 5.61 0.00 0.00 1.89
1619 4829 6.202188 GTCACGAGGATCTTCAAACTACAAAA 59.798 38.462 5.61 0.00 0.00 2.44
1666 4876 3.585862 CATCGAAGTTATACCCATCCCG 58.414 50.000 0.00 0.00 0.00 5.14
1707 4917 8.468399 GGAGTAAGTTGCTAAGACTATAGTGTT 58.532 37.037 18.27 18.27 35.59 3.32
1722 4932 5.703130 AGAGACTTTGAATGGAGTAAGTTGC 59.297 40.000 0.00 0.00 31.41 4.17
1939 5164 3.452627 CAGAGGACTGGGTACTTAGCATT 59.547 47.826 0.00 0.00 40.14 3.56
2057 5282 9.445786 TTTTACAGCTAAAATCAAGAAAGAACG 57.554 29.630 0.00 0.00 28.60 3.95
2376 5601 1.211949 AGGTGGTGGTAAATGATCGGG 59.788 52.381 0.00 0.00 0.00 5.14
2442 5667 9.034800 TGGTAATAGGAATTCTGCTTCAATTTT 57.965 29.630 5.23 0.00 0.00 1.82
2514 5740 2.562298 GCATTGGGATTCTGGACAAACA 59.438 45.455 0.00 0.00 0.00 2.83
2558 5784 6.238759 GGAACATTTCAGGTAATATGAGTGCC 60.239 42.308 0.00 0.00 0.00 5.01
2776 6002 5.848406 TGCATAAAGGAAACGAAAAATGGT 58.152 33.333 0.00 0.00 0.00 3.55
2786 6012 9.982651 TCAGAGTACTATATGCATAAAGGAAAC 57.017 33.333 11.13 5.05 0.00 2.78
2979 6205 6.574073 GCAATGGTCATTGGATGAAAACCTTA 60.574 38.462 20.88 0.00 46.14 2.69
3023 6249 8.040716 ACAGTGCAATAGTTAGGTATTTTCAC 57.959 34.615 0.00 0.00 0.00 3.18
3120 6346 4.092968 CAGCCAAGACGGTGTAATTAGAAC 59.907 45.833 0.00 0.00 36.97 3.01
3233 6460 2.461300 TCCCAGGACTGACTAGGATG 57.539 55.000 0.00 0.00 0.00 3.51
3253 6480 2.642311 TGGTTAGCCTCATGAACCAGAA 59.358 45.455 11.41 0.00 45.95 3.02
3517 6744 1.531149 ACGTCCTTTTGATGCTGAACG 59.469 47.619 0.00 0.00 32.89 3.95
3566 6793 4.301072 TTTGGAGGTTGGGAATCTACTG 57.699 45.455 0.00 0.00 0.00 2.74
3606 6833 4.697352 AGATCATGTTGTACACCTGAAAGC 59.303 41.667 0.00 0.00 34.12 3.51
3709 7019 9.950496 ATGACAGAACAACTCATTCTTTAGTAT 57.050 29.630 0.00 0.00 34.08 2.12
3761 7071 9.490663 GGAACATAATCAAATAACTGAACTTCG 57.509 33.333 0.00 0.00 0.00 3.79
3832 7142 3.919554 AGTTCTTGAGAAGGAAATCCCCT 59.080 43.478 0.00 0.00 38.42 4.79
3875 7185 5.931441 ACACAAGAATCTAAGCAGTTCAC 57.069 39.130 0.00 0.00 0.00 3.18
3985 7295 5.619086 GCATACCTCATACAACCAACACAAC 60.619 44.000 0.00 0.00 0.00 3.32
4012 7322 7.413644 GCTTTCCATAGAAGCTCTCAATAAAC 58.586 38.462 1.85 0.00 44.63 2.01
4367 7677 6.604396 ACTGAATTCAATATCCAGAATGCACA 59.396 34.615 9.88 0.00 35.41 4.57
4429 7739 5.185828 ACTTACAGAAGCAATTGGGGATTTC 59.814 40.000 7.72 0.00 35.97 2.17
4614 7925 2.962569 GTTTCTTCGGGCTTGCCC 59.037 61.111 20.15 20.15 0.00 5.36
4623 7934 0.110644 GCTTGGACTGCGTTTCTTCG 60.111 55.000 0.00 0.00 0.00 3.79
4776 8087 3.321648 ACACGCCTCATCTGCCCA 61.322 61.111 0.00 0.00 0.00 5.36
4901 8220 3.785486 TGATAGTGCTCAAGTTCGATGG 58.215 45.455 0.00 0.00 0.00 3.51
4937 8256 1.891150 AGTTGAATGAAAGGCTGGCTG 59.109 47.619 3.84 0.00 0.00 4.85
4944 8263 8.499162 CAGACAAAGTACTAGTTGAATGAAAGG 58.501 37.037 13.09 0.00 0.00 3.11
5030 8432 5.535333 ACATTGGTGAGAAAAAGCATGAAG 58.465 37.500 0.00 0.00 0.00 3.02
5075 8676 3.294943 ACGAACTTATACGAGCATACGC 58.705 45.455 0.00 0.00 36.70 4.42
5079 8680 5.296283 ACAGAGTACGAACTTATACGAGCAT 59.704 40.000 0.00 0.00 35.56 3.79
5092 8693 9.140286 CTCAATTAATTCAGAACAGAGTACGAA 57.860 33.333 0.00 0.00 0.00 3.85
5118 8719 7.036829 GTCTGACTTAGGACAAATCTAGAACC 58.963 42.308 0.00 0.00 33.19 3.62
5298 8905 2.814183 AAGAGACGCGCCTTACACCG 62.814 60.000 5.73 0.00 0.00 4.94
5299 8906 0.669625 AAAGAGACGCGCCTTACACC 60.670 55.000 5.73 0.00 0.00 4.16
5300 8907 1.136336 CAAAAGAGACGCGCCTTACAC 60.136 52.381 5.73 0.00 0.00 2.90
5302 8909 1.425412 TCAAAAGAGACGCGCCTTAC 58.575 50.000 5.73 0.00 0.00 2.34
5303 8910 2.066262 CTTCAAAAGAGACGCGCCTTA 58.934 47.619 5.73 0.00 0.00 2.69
5304 8911 0.868406 CTTCAAAAGAGACGCGCCTT 59.132 50.000 5.73 4.38 0.00 4.35
5305 8912 0.033504 TCTTCAAAAGAGACGCGCCT 59.966 50.000 5.73 0.00 32.71 5.52
5306 8913 0.865769 TTCTTCAAAAGAGACGCGCC 59.134 50.000 5.73 0.00 39.03 6.53
5308 8915 5.118664 TGTCTATTTCTTCAAAAGAGACGCG 59.881 40.000 3.53 3.53 39.37 6.01
5309 8916 6.467723 TGTCTATTTCTTCAAAAGAGACGC 57.532 37.500 16.13 0.52 39.37 5.19
5310 8917 7.959651 CCAATGTCTATTTCTTCAAAAGAGACG 59.040 37.037 16.13 6.37 39.37 4.18
5311 8918 8.787852 ACCAATGTCTATTTCTTCAAAAGAGAC 58.212 33.333 14.98 14.98 39.03 3.36
5312 8919 8.924511 ACCAATGTCTATTTCTTCAAAAGAGA 57.075 30.769 0.00 0.00 39.03 3.10
5313 8920 9.971922 AAACCAATGTCTATTTCTTCAAAAGAG 57.028 29.630 0.00 0.00 39.03 2.85
5347 8956 6.044046 AGGTGTTTGGAAAAATAAACCGAAC 58.956 36.000 0.00 0.00 44.06 3.95
5362 8971 2.039084 AGGTGCTTAGAGAGGTGTTTGG 59.961 50.000 0.00 0.00 0.00 3.28
5366 8975 6.384305 ACAATATTAGGTGCTTAGAGAGGTGT 59.616 38.462 0.00 0.00 0.00 4.16
5378 8987 4.461198 AGGCCTTGTACAATATTAGGTGC 58.539 43.478 9.13 2.65 0.00 5.01
5379 8988 6.119536 TGAAGGCCTTGTACAATATTAGGTG 58.880 40.000 26.25 0.00 0.00 4.00
5407 9016 1.905637 AGCAAAGGTTTAAGGGTCCG 58.094 50.000 0.00 0.00 0.00 4.79
5413 9022 8.070171 CCATCGAACATATAGCAAAGGTTTAAG 58.930 37.037 0.00 0.00 0.00 1.85
5424 9033 3.045601 AGTGGCCATCGAACATATAGC 57.954 47.619 9.72 0.00 0.00 2.97
5427 9036 3.181487 GCAAAAGTGGCCATCGAACATAT 60.181 43.478 9.72 0.00 0.00 1.78
5458 9068 0.905357 GCGGGCATATACAGATCCCT 59.095 55.000 0.00 0.00 34.84 4.20
5461 9071 2.263077 CGAAGCGGGCATATACAGATC 58.737 52.381 0.00 0.00 0.00 2.75
5480 9090 2.218953 ACCCATACATTCGTACTGCG 57.781 50.000 0.00 0.00 43.01 5.18
5481 9091 2.870411 GGAACCCATACATTCGTACTGC 59.130 50.000 0.00 0.00 0.00 4.40
5482 9092 3.120792 CGGAACCCATACATTCGTACTG 58.879 50.000 0.00 0.00 0.00 2.74
5483 9093 2.101917 CCGGAACCCATACATTCGTACT 59.898 50.000 0.00 0.00 0.00 2.73
5484 9094 2.159057 ACCGGAACCCATACATTCGTAC 60.159 50.000 9.46 0.00 0.00 3.67
5485 9095 2.109774 ACCGGAACCCATACATTCGTA 58.890 47.619 9.46 0.00 0.00 3.43
5486 9096 0.906775 ACCGGAACCCATACATTCGT 59.093 50.000 9.46 0.00 0.00 3.85
5487 9097 2.894763 TACCGGAACCCATACATTCG 57.105 50.000 9.46 0.00 0.00 3.34
5488 9098 3.071892 TGGATACCGGAACCCATACATTC 59.928 47.826 9.46 0.00 0.00 2.67
5489 9099 3.050089 TGGATACCGGAACCCATACATT 58.950 45.455 9.46 0.00 0.00 2.71
5490 9100 2.696775 TGGATACCGGAACCCATACAT 58.303 47.619 9.46 0.00 0.00 2.29
5491 9101 2.177811 TGGATACCGGAACCCATACA 57.822 50.000 9.46 0.00 0.00 2.29
5492 9102 2.701951 TCTTGGATACCGGAACCCATAC 59.298 50.000 9.46 0.00 0.00 2.39
5493 9103 2.969950 CTCTTGGATACCGGAACCCATA 59.030 50.000 9.46 2.67 0.00 2.74
5494 9104 1.768870 CTCTTGGATACCGGAACCCAT 59.231 52.381 9.46 0.00 0.00 4.00
5495 9105 1.200519 CTCTTGGATACCGGAACCCA 58.799 55.000 9.46 9.08 0.00 4.51
5496 9106 1.138464 GTCTCTTGGATACCGGAACCC 59.862 57.143 9.46 6.10 0.00 4.11
5497 9107 1.829222 TGTCTCTTGGATACCGGAACC 59.171 52.381 9.46 9.02 0.00 3.62
5498 9108 3.604875 TTGTCTCTTGGATACCGGAAC 57.395 47.619 9.46 0.00 0.00 3.62
5499 9109 4.041198 ACTTTTGTCTCTTGGATACCGGAA 59.959 41.667 9.46 0.00 0.00 4.30
5500 9110 3.581332 ACTTTTGTCTCTTGGATACCGGA 59.419 43.478 9.46 0.00 0.00 5.14
5501 9111 3.684788 CACTTTTGTCTCTTGGATACCGG 59.315 47.826 0.00 0.00 0.00 5.28
5502 9112 3.684788 CCACTTTTGTCTCTTGGATACCG 59.315 47.826 0.00 0.00 0.00 4.02
5503 9113 4.010349 CCCACTTTTGTCTCTTGGATACC 58.990 47.826 0.00 0.00 0.00 2.73
5504 9114 4.010349 CCCCACTTTTGTCTCTTGGATAC 58.990 47.826 0.00 0.00 0.00 2.24
5505 9115 3.913799 TCCCCACTTTTGTCTCTTGGATA 59.086 43.478 0.00 0.00 0.00 2.59
5506 9116 2.716424 TCCCCACTTTTGTCTCTTGGAT 59.284 45.455 0.00 0.00 0.00 3.41
5507 9117 2.131854 TCCCCACTTTTGTCTCTTGGA 58.868 47.619 0.00 0.00 0.00 3.53
5508 9118 2.656947 TCCCCACTTTTGTCTCTTGG 57.343 50.000 0.00 0.00 0.00 3.61
5509 9119 3.507622 GGAATCCCCACTTTTGTCTCTTG 59.492 47.826 0.00 0.00 34.14 3.02
5510 9120 3.140144 TGGAATCCCCACTTTTGTCTCTT 59.860 43.478 0.00 0.00 40.82 2.85
5511 9121 2.716424 TGGAATCCCCACTTTTGTCTCT 59.284 45.455 0.00 0.00 40.82 3.10
5512 9122 3.084786 CTGGAATCCCCACTTTTGTCTC 58.915 50.000 0.00 0.00 40.82 3.36
5513 9123 2.447047 ACTGGAATCCCCACTTTTGTCT 59.553 45.455 0.00 0.00 40.82 3.41
5514 9124 2.876581 ACTGGAATCCCCACTTTTGTC 58.123 47.619 0.00 0.00 40.82 3.18
5515 9125 3.499745 GGTACTGGAATCCCCACTTTTGT 60.500 47.826 0.00 0.00 40.82 2.83
5516 9126 3.089284 GGTACTGGAATCCCCACTTTTG 58.911 50.000 0.00 0.00 40.82 2.44
5517 9127 2.719705 TGGTACTGGAATCCCCACTTTT 59.280 45.455 0.00 0.00 40.82 2.27
5518 9128 2.354328 TGGTACTGGAATCCCCACTTT 58.646 47.619 0.00 0.00 40.82 2.66
5519 9129 2.053747 TGGTACTGGAATCCCCACTT 57.946 50.000 0.00 0.00 40.82 3.16
5520 9130 2.053747 TTGGTACTGGAATCCCCACT 57.946 50.000 0.00 0.00 40.82 4.00
5521 9131 2.891191 TTTGGTACTGGAATCCCCAC 57.109 50.000 0.00 0.00 40.82 4.61
5522 9132 2.990284 TCTTTTGGTACTGGAATCCCCA 59.010 45.455 0.00 0.00 44.25 4.96
5523 9133 3.353557 GTCTTTTGGTACTGGAATCCCC 58.646 50.000 0.00 0.00 0.00 4.81
5524 9134 3.007635 CGTCTTTTGGTACTGGAATCCC 58.992 50.000 0.00 0.00 0.00 3.85
5525 9135 3.934068 TCGTCTTTTGGTACTGGAATCC 58.066 45.455 0.00 0.00 0.00 3.01
5526 9136 4.753107 TGTTCGTCTTTTGGTACTGGAATC 59.247 41.667 0.00 0.00 0.00 2.52
5527 9137 4.710324 TGTTCGTCTTTTGGTACTGGAAT 58.290 39.130 0.00 0.00 0.00 3.01
5528 9138 4.139859 TGTTCGTCTTTTGGTACTGGAA 57.860 40.909 0.00 0.00 0.00 3.53
5529 9139 3.823281 TGTTCGTCTTTTGGTACTGGA 57.177 42.857 0.00 0.00 0.00 3.86
5530 9140 3.188460 CCATGTTCGTCTTTTGGTACTGG 59.812 47.826 0.00 0.00 0.00 4.00
5531 9141 3.188460 CCCATGTTCGTCTTTTGGTACTG 59.812 47.826 0.00 0.00 0.00 2.74
5532 9142 3.071892 TCCCATGTTCGTCTTTTGGTACT 59.928 43.478 0.00 0.00 0.00 2.73
5533 9143 3.404899 TCCCATGTTCGTCTTTTGGTAC 58.595 45.455 0.00 0.00 0.00 3.34
5534 9144 3.773418 TCCCATGTTCGTCTTTTGGTA 57.227 42.857 0.00 0.00 0.00 3.25
5535 9145 2.649531 TCCCATGTTCGTCTTTTGGT 57.350 45.000 0.00 0.00 0.00 3.67
5536 9146 4.519540 AAATCCCATGTTCGTCTTTTGG 57.480 40.909 0.00 0.00 0.00 3.28
5537 9147 5.288804 ACAAAATCCCATGTTCGTCTTTTG 58.711 37.500 0.00 0.00 37.83 2.44
5538 9148 5.528870 GACAAAATCCCATGTTCGTCTTTT 58.471 37.500 0.00 0.00 0.00 2.27
5539 9149 4.320202 CGACAAAATCCCATGTTCGTCTTT 60.320 41.667 0.00 0.00 0.00 2.52
5540 9150 3.188460 CGACAAAATCCCATGTTCGTCTT 59.812 43.478 0.00 0.00 0.00 3.01
5541 9151 2.742053 CGACAAAATCCCATGTTCGTCT 59.258 45.455 0.00 0.00 0.00 4.18
5542 9152 2.159572 CCGACAAAATCCCATGTTCGTC 60.160 50.000 0.00 0.00 0.00 4.20
5543 9153 1.810151 CCGACAAAATCCCATGTTCGT 59.190 47.619 0.00 0.00 0.00 3.85
5544 9154 2.080693 TCCGACAAAATCCCATGTTCG 58.919 47.619 0.00 0.00 0.00 3.95
5545 9155 3.081804 ACTCCGACAAAATCCCATGTTC 58.918 45.455 0.00 0.00 0.00 3.18
5546 9156 3.081804 GACTCCGACAAAATCCCATGTT 58.918 45.455 0.00 0.00 0.00 2.71
5547 9157 2.618045 GGACTCCGACAAAATCCCATGT 60.618 50.000 0.00 0.00 0.00 3.21
5548 9158 2.017049 GGACTCCGACAAAATCCCATG 58.983 52.381 0.00 0.00 0.00 3.66
5549 9159 2.420058 GGACTCCGACAAAATCCCAT 57.580 50.000 0.00 0.00 0.00 4.00
5550 9160 3.948735 GGACTCCGACAAAATCCCA 57.051 52.632 0.00 0.00 0.00 4.37
5562 9172 1.583054 GCACATACATTCCGGACTCC 58.417 55.000 1.83 0.00 0.00 3.85
5563 9173 1.134521 TGGCACATACATTCCGGACTC 60.135 52.381 1.83 0.00 0.00 3.36
5564 9174 0.908910 TGGCACATACATTCCGGACT 59.091 50.000 1.83 0.00 0.00 3.85
5565 9175 3.469564 TGGCACATACATTCCGGAC 57.530 52.632 1.83 0.00 0.00 4.79
5573 9183 8.282649 CCTTTCCTCTAAAAGATGGCACATACA 61.283 40.741 0.00 0.00 38.30 2.29
5574 9184 6.038714 CCTTTCCTCTAAAAGATGGCACATAC 59.961 42.308 0.00 0.00 38.30 2.39
5575 9185 6.122277 CCTTTCCTCTAAAAGATGGCACATA 58.878 40.000 0.00 0.00 38.30 2.29
5576 9186 4.952335 CCTTTCCTCTAAAAGATGGCACAT 59.048 41.667 0.00 0.00 38.30 3.21
5577 9187 4.335416 CCTTTCCTCTAAAAGATGGCACA 58.665 43.478 0.00 0.00 38.30 4.57
5578 9188 3.129462 GCCTTTCCTCTAAAAGATGGCAC 59.871 47.826 0.00 0.00 38.30 5.01
5579 9189 3.245229 TGCCTTTCCTCTAAAAGATGGCA 60.245 43.478 0.00 0.00 38.30 4.92
5580 9190 3.356290 TGCCTTTCCTCTAAAAGATGGC 58.644 45.455 0.00 0.00 38.30 4.40
5581 9191 4.202090 GCATGCCTTTCCTCTAAAAGATGG 60.202 45.833 6.36 0.00 38.30 3.51
5582 9192 4.497006 CGCATGCCTTTCCTCTAAAAGATG 60.497 45.833 13.15 0.00 38.30 2.90
5583 9193 3.629398 CGCATGCCTTTCCTCTAAAAGAT 59.371 43.478 13.15 0.00 38.30 2.40
5584 9194 3.009723 CGCATGCCTTTCCTCTAAAAGA 58.990 45.455 13.15 0.00 38.30 2.52
5585 9195 2.478539 GCGCATGCCTTTCCTCTAAAAG 60.479 50.000 13.15 0.00 36.26 2.27
5586 9196 1.472480 GCGCATGCCTTTCCTCTAAAA 59.528 47.619 13.15 0.00 33.98 1.52
5587 9197 1.094785 GCGCATGCCTTTCCTCTAAA 58.905 50.000 13.15 0.00 33.98 1.85
5588 9198 2.780595 GCGCATGCCTTTCCTCTAA 58.219 52.632 13.15 0.00 33.98 2.10
5589 9199 4.540153 GCGCATGCCTTTCCTCTA 57.460 55.556 13.15 0.00 33.98 2.43
5599 9209 0.941542 TTATAAAGTCGGGCGCATGC 59.058 50.000 10.83 7.91 41.71 4.06
5600 9210 3.896648 ATTTATAAAGTCGGGCGCATG 57.103 42.857 10.83 0.00 0.00 4.06
5601 9211 5.562113 GCTTTATTTATAAAGTCGGGCGCAT 60.562 40.000 10.83 0.00 46.78 4.73
5602 9212 4.260866 GCTTTATTTATAAAGTCGGGCGCA 60.261 41.667 10.83 0.00 46.78 6.09
5603 9213 4.216731 GCTTTATTTATAAAGTCGGGCGC 58.783 43.478 18.51 0.00 46.78 6.53
5604 9214 4.779987 GGCTTTATTTATAAAGTCGGGCG 58.220 43.478 18.51 0.00 46.78 6.13
5625 9235 4.275936 GTGTATTTGCTACCTGCCTTATGG 59.724 45.833 0.00 0.00 42.00 2.74
5626 9236 4.881273 TGTGTATTTGCTACCTGCCTTATG 59.119 41.667 0.00 0.00 42.00 1.90
5627 9237 5.110814 TGTGTATTTGCTACCTGCCTTAT 57.889 39.130 0.00 0.00 42.00 1.73
5628 9238 4.561500 TGTGTATTTGCTACCTGCCTTA 57.438 40.909 0.00 0.00 42.00 2.69
5629 9239 3.433306 TGTGTATTTGCTACCTGCCTT 57.567 42.857 0.00 0.00 42.00 4.35
5630 9240 3.433306 TTGTGTATTTGCTACCTGCCT 57.567 42.857 0.00 0.00 42.00 4.75
5631 9241 3.119495 CCTTTGTGTATTTGCTACCTGCC 60.119 47.826 0.00 0.00 42.00 4.85
5632 9242 3.506067 ACCTTTGTGTATTTGCTACCTGC 59.494 43.478 0.00 0.00 43.25 4.85
5633 9243 5.240623 TGAACCTTTGTGTATTTGCTACCTG 59.759 40.000 0.00 0.00 0.00 4.00
5634 9244 5.381757 TGAACCTTTGTGTATTTGCTACCT 58.618 37.500 0.00 0.00 0.00 3.08
5635 9245 5.699097 TGAACCTTTGTGTATTTGCTACC 57.301 39.130 0.00 0.00 0.00 3.18
5636 9246 6.856426 GTCTTGAACCTTTGTGTATTTGCTAC 59.144 38.462 0.00 0.00 0.00 3.58
5637 9247 6.016610 GGTCTTGAACCTTTGTGTATTTGCTA 60.017 38.462 0.00 0.00 45.45 3.49
5638 9248 5.221244 GGTCTTGAACCTTTGTGTATTTGCT 60.221 40.000 0.00 0.00 45.45 3.91
5639 9249 4.982295 GGTCTTGAACCTTTGTGTATTTGC 59.018 41.667 0.00 0.00 45.45 3.68
5653 9263 0.668535 GCTGGTTGTGGGTCTTGAAC 59.331 55.000 0.00 0.00 0.00 3.18
5654 9264 0.257328 TGCTGGTTGTGGGTCTTGAA 59.743 50.000 0.00 0.00 0.00 2.69
5655 9265 0.257328 TTGCTGGTTGTGGGTCTTGA 59.743 50.000 0.00 0.00 0.00 3.02
5656 9266 0.670162 CTTGCTGGTTGTGGGTCTTG 59.330 55.000 0.00 0.00 0.00 3.02
5657 9267 0.550914 TCTTGCTGGTTGTGGGTCTT 59.449 50.000 0.00 0.00 0.00 3.01
5658 9268 0.179018 GTCTTGCTGGTTGTGGGTCT 60.179 55.000 0.00 0.00 0.00 3.85
5659 9269 1.172812 GGTCTTGCTGGTTGTGGGTC 61.173 60.000 0.00 0.00 0.00 4.46
5660 9270 1.152756 GGTCTTGCTGGTTGTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
5661 9271 1.903404 GGGTCTTGCTGGTTGTGGG 60.903 63.158 0.00 0.00 0.00 4.61
5662 9272 1.903404 GGGGTCTTGCTGGTTGTGG 60.903 63.158 0.00 0.00 0.00 4.17
5663 9273 0.754957 TTGGGGTCTTGCTGGTTGTG 60.755 55.000 0.00 0.00 0.00 3.33
5664 9274 0.755327 GTTGGGGTCTTGCTGGTTGT 60.755 55.000 0.00 0.00 0.00 3.32
5665 9275 1.463553 GGTTGGGGTCTTGCTGGTTG 61.464 60.000 0.00 0.00 0.00 3.77
5666 9276 1.152546 GGTTGGGGTCTTGCTGGTT 60.153 57.895 0.00 0.00 0.00 3.67
5667 9277 2.357593 CTGGTTGGGGTCTTGCTGGT 62.358 60.000 0.00 0.00 0.00 4.00
5668 9278 1.604593 CTGGTTGGGGTCTTGCTGG 60.605 63.158 0.00 0.00 0.00 4.85
5669 9279 1.604593 CCTGGTTGGGGTCTTGCTG 60.605 63.158 0.00 0.00 0.00 4.41
5670 9280 2.846532 CCTGGTTGGGGTCTTGCT 59.153 61.111 0.00 0.00 0.00 3.91
5681 9291 4.514585 TTGCGTGTGGCCCTGGTT 62.515 61.111 0.00 0.00 42.61 3.67
5682 9292 4.954970 CTTGCGTGTGGCCCTGGT 62.955 66.667 0.00 0.00 42.61 4.00
5683 9293 4.641645 TCTTGCGTGTGGCCCTGG 62.642 66.667 0.00 0.00 42.61 4.45
5684 9294 3.052082 CTCTTGCGTGTGGCCCTG 61.052 66.667 0.00 0.00 42.61 4.45
5685 9295 3.241530 TCTCTTGCGTGTGGCCCT 61.242 61.111 0.00 0.00 42.61 5.19
5686 9296 2.743928 CTCTCTTGCGTGTGGCCC 60.744 66.667 0.00 0.00 42.61 5.80
5687 9297 0.320421 TAACTCTCTTGCGTGTGGCC 60.320 55.000 0.00 0.00 42.61 5.36
5688 9298 1.508632 TTAACTCTCTTGCGTGTGGC 58.491 50.000 0.00 0.00 43.96 5.01
5689 9299 3.058914 CCTTTTAACTCTCTTGCGTGTGG 60.059 47.826 0.00 0.00 0.00 4.17
5690 9300 3.058914 CCCTTTTAACTCTCTTGCGTGTG 60.059 47.826 0.00 0.00 0.00 3.82
5691 9301 3.139077 CCCTTTTAACTCTCTTGCGTGT 58.861 45.455 0.00 0.00 0.00 4.49
5692 9302 2.484264 CCCCTTTTAACTCTCTTGCGTG 59.516 50.000 0.00 0.00 0.00 5.34
5693 9303 2.370849 TCCCCTTTTAACTCTCTTGCGT 59.629 45.455 0.00 0.00 0.00 5.24
5694 9304 3.053831 TCCCCTTTTAACTCTCTTGCG 57.946 47.619 0.00 0.00 0.00 4.85
5695 9305 5.497474 TGTATCCCCTTTTAACTCTCTTGC 58.503 41.667 0.00 0.00 0.00 4.01
5696 9306 6.543831 CCATGTATCCCCTTTTAACTCTCTTG 59.456 42.308 0.00 0.00 0.00 3.02
5697 9307 6.663734 CCATGTATCCCCTTTTAACTCTCTT 58.336 40.000 0.00 0.00 0.00 2.85
5698 9308 5.398012 GCCATGTATCCCCTTTTAACTCTCT 60.398 44.000 0.00 0.00 0.00 3.10
5699 9309 4.822350 GCCATGTATCCCCTTTTAACTCTC 59.178 45.833 0.00 0.00 0.00 3.20
5700 9310 4.478686 AGCCATGTATCCCCTTTTAACTCT 59.521 41.667 0.00 0.00 0.00 3.24
5701 9311 4.793201 AGCCATGTATCCCCTTTTAACTC 58.207 43.478 0.00 0.00 0.00 3.01
5702 9312 4.386424 GGAGCCATGTATCCCCTTTTAACT 60.386 45.833 2.63 0.00 0.00 2.24
5703 9313 3.889538 GGAGCCATGTATCCCCTTTTAAC 59.110 47.826 2.63 0.00 0.00 2.01
5704 9314 4.178956 GGAGCCATGTATCCCCTTTTAA 57.821 45.455 2.63 0.00 0.00 1.52
5705 9315 3.876309 GGAGCCATGTATCCCCTTTTA 57.124 47.619 2.63 0.00 0.00 1.52
5706 9316 2.755952 GGAGCCATGTATCCCCTTTT 57.244 50.000 2.63 0.00 0.00 2.27
5730 9340 0.377203 GTAATCTTTTCGGCCTGCGG 59.623 55.000 0.00 0.00 0.00 5.69
5731 9341 1.062587 CAGTAATCTTTTCGGCCTGCG 59.937 52.381 0.00 0.00 0.00 5.18
5732 9342 2.084546 ACAGTAATCTTTTCGGCCTGC 58.915 47.619 0.00 0.00 0.00 4.85
5733 9343 2.678336 GGACAGTAATCTTTTCGGCCTG 59.322 50.000 0.00 0.00 0.00 4.85
5734 9344 2.304761 TGGACAGTAATCTTTTCGGCCT 59.695 45.455 0.00 0.00 0.00 5.19
5735 9345 2.706890 TGGACAGTAATCTTTTCGGCC 58.293 47.619 0.00 0.00 0.00 6.13
5736 9346 4.759516 TTTGGACAGTAATCTTTTCGGC 57.240 40.909 0.00 0.00 0.00 5.54
5737 9347 6.856426 GTCTTTTTGGACAGTAATCTTTTCGG 59.144 38.462 0.00 0.00 36.35 4.30
5738 9348 7.639945 AGTCTTTTTGGACAGTAATCTTTTCG 58.360 34.615 0.00 0.00 38.57 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.