Multiple sequence alignment - TraesCS4D01G168300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G168300 chr4D 100.000 5724 0 0 1 5724 292909084 292914807 0.000000e+00 10571.0
1 TraesCS4D01G168300 chr4D 93.970 199 6 2 5401 5593 292914382 292914580 4.340000e-76 296.0
2 TraesCS4D01G168300 chr4D 93.970 199 6 2 5299 5497 292914484 292914676 4.340000e-76 296.0
3 TraesCS4D01G168300 chr4D 98.788 165 2 0 3448 3612 32357082 32357246 1.560000e-75 294.0
4 TraesCS4D01G168300 chr4D 90.404 198 14 5 3430 3624 423392221 423392416 7.360000e-64 255.0
5 TraesCS4D01G168300 chr4D 91.262 103 3 3 5497 5593 292914382 292914484 1.000000e-27 135.0
6 TraesCS4D01G168300 chr4D 91.262 103 3 3 5299 5401 292914580 292914676 1.000000e-27 135.0
7 TraesCS4D01G168300 chr4D 100.000 29 0 0 5282 5310 292914337 292914365 3.000000e-03 54.7
8 TraesCS4D01G168300 chr4D 100.000 29 0 0 5254 5282 292914365 292914393 3.000000e-03 54.7
9 TraesCS4D01G168300 chr4A 97.721 3466 59 13 1 3450 321904484 321901023 0.000000e+00 5945.0
10 TraesCS4D01G168300 chr4A 93.733 1500 34 20 3609 5096 321901025 321899574 0.000000e+00 2194.0
11 TraesCS4D01G168300 chr4A 89.787 235 17 3 5496 5723 321898472 321898238 1.560000e-75 294.0
12 TraesCS4D01G168300 chr4B 96.353 1837 43 6 1 1830 277316198 277318017 0.000000e+00 3000.0
13 TraesCS4D01G168300 chr4B 97.789 1628 22 7 1829 3444 277318099 277319724 0.000000e+00 2795.0
14 TraesCS4D01G168300 chr4B 92.050 1610 44 37 3605 5184 277319713 277321268 0.000000e+00 2187.0
15 TraesCS4D01G168300 chr4B 87.192 203 12 5 5509 5704 277321308 277321503 9.660000e-53 219.0
16 TraesCS4D01G168300 chr4B 93.056 72 5 0 5312 5383 277321308 277321379 7.840000e-19 106.0
17 TraesCS4D01G168300 chr4B 94.231 52 3 0 5413 5464 277321308 277321359 4.750000e-11 80.5
18 TraesCS4D01G168300 chr2D 98.204 167 3 0 3448 3614 83920436 83920602 5.610000e-75 292.0
19 TraesCS4D01G168300 chr7D 98.193 166 3 0 3446 3611 60706392 60706227 2.020000e-74 291.0
20 TraesCS4D01G168300 chr7D 87.981 208 21 4 3448 3654 224056551 224056755 5.730000e-60 243.0
21 TraesCS4D01G168300 chr3D 98.160 163 3 0 3448 3610 582989963 582989801 9.390000e-73 285.0
22 TraesCS4D01G168300 chr1D 96.386 166 6 0 3448 3613 282945085 282944920 2.030000e-69 274.0
23 TraesCS4D01G168300 chr6D 94.253 174 9 1 3448 3621 266777641 266777469 1.220000e-66 265.0
24 TraesCS4D01G168300 chr6D 89.441 161 12 2 323 483 346454051 346453896 1.260000e-46 198.0
25 TraesCS4D01G168300 chr2A 91.579 190 14 2 3427 3615 250729727 250729539 1.580000e-65 261.0
26 TraesCS4D01G168300 chr5D 90.909 165 14 1 320 483 399614685 399614521 2.680000e-53 220.0
27 TraesCS4D01G168300 chr5B 90.303 165 15 1 320 483 479726998 479726834 1.250000e-51 215.0
28 TraesCS4D01G168300 chr3A 89.286 168 14 3 317 483 675873017 675873181 2.090000e-49 207.0
29 TraesCS4D01G168300 chr6A 90.000 160 12 3 319 477 47466951 47466795 2.700000e-48 204.0
30 TraesCS4D01G168300 chr1B 89.024 164 17 1 320 482 574286834 574286997 9.720000e-48 202.0
31 TraesCS4D01G168300 chr1B 88.095 168 18 2 317 483 336072254 336072088 1.260000e-46 198.0
32 TraesCS4D01G168300 chr5A 80.556 144 24 3 5577 5716 646022294 646022151 2.180000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G168300 chr4D 292909084 292914807 5723 False 1648.914286 10571 95.780571 1 5724 7 chr4D.!!$F3 5723
1 TraesCS4D01G168300 chr4A 321898238 321904484 6246 True 2811.000000 5945 93.747000 1 5723 3 chr4A.!!$R1 5722
2 TraesCS4D01G168300 chr4B 277316198 277321503 5305 False 1397.916667 3000 93.445167 1 5704 6 chr4B.!!$F1 5703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 987 1.076044 ACAAGCAAGTTGCCCACCT 60.076 52.632 24.02 2.16 46.52 4.00 F
1105 1112 2.131183 CTAGCTTTATCTCAGTGGCGC 58.869 52.381 0.00 0.00 0.00 6.53 F
1400 1409 2.677337 GCAGGAGCAGAAGTTCTTGATC 59.323 50.000 1.56 7.26 41.58 2.92 F
3021 3132 1.551430 CTGCATTGGGGAATGAGCAAA 59.449 47.619 0.00 0.00 31.98 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2780 2890 9.107177 CAGAAAATCATAAACTACATCAGAGCT 57.893 33.333 0.00 0.0 0.00 4.09 R
3021 3132 6.016276 ACTGAGAACGCCAAACTTGAAATATT 60.016 34.615 0.00 0.0 0.00 1.28 R
3145 3256 4.936685 AATAGGTTCCAGCTTCTCCTTT 57.063 40.909 2.54 0.0 0.00 3.11 R
4991 5142 0.786435 ATCCAAAGAAGCTTGGGGGT 59.214 50.000 2.10 0.0 45.16 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.095263 TGCCGCATTGCTACTTTTCTTC 60.095 45.455 7.12 0.00 0.00 2.87
363 365 1.701847 AGAATCTGTCCACTTGTGGCT 59.298 47.619 14.49 1.99 0.00 4.75
420 422 4.788925 ATGTTATGCAAGGGTAAGGCTA 57.211 40.909 0.00 0.00 0.00 3.93
437 439 7.016760 GGTAAGGCTATCTAGAAATTCCCTTCT 59.983 40.741 13.44 0.00 39.09 2.85
945 949 5.873164 TGTAGAAGAAGAAAGCCGGAATTAC 59.127 40.000 5.05 0.00 0.00 1.89
973 980 1.334869 GGACAGACCACAAGCAAGTTG 59.665 52.381 0.00 0.00 42.48 3.16
980 987 1.076044 ACAAGCAAGTTGCCCACCT 60.076 52.632 24.02 2.16 46.52 4.00
1014 1021 2.544480 GCAGTATGGCTCCGAAAAAC 57.456 50.000 0.00 0.00 35.86 2.43
1105 1112 2.131183 CTAGCTTTATCTCAGTGGCGC 58.869 52.381 0.00 0.00 0.00 6.53
1293 1300 5.116084 TGAAAGATTTCATACCTCCCTGG 57.884 43.478 3.91 0.00 41.88 4.45
1400 1409 2.677337 GCAGGAGCAGAAGTTCTTGATC 59.323 50.000 1.56 7.26 41.58 2.92
1467 1476 6.415573 AGTAGACCTGTCTGTTCTTGTTTTT 58.584 36.000 10.02 0.00 40.71 1.94
1555 1564 5.219343 TGATACTTGGAGTGAGCATATGG 57.781 43.478 4.56 0.00 0.00 2.74
1900 2000 9.743057 TTTCACCAACTTATTTTTCTGTGTATG 57.257 29.630 0.00 0.00 0.00 2.39
1905 2005 8.141268 CCAACTTATTTTTCTGTGTATGTGGTT 58.859 33.333 0.00 0.00 0.00 3.67
2780 2890 7.012327 GTGCCTCTTTGCTTCATGTATGTAATA 59.988 37.037 0.00 0.00 0.00 0.98
3021 3132 1.551430 CTGCATTGGGGAATGAGCAAA 59.449 47.619 0.00 0.00 31.98 3.68
3434 3545 7.617723 ACCTCTATGCTTTATCTACCCTCATAG 59.382 40.741 0.00 0.00 35.51 2.23
3435 3546 7.069331 CCTCTATGCTTTATCTACCCTCATAGG 59.931 44.444 0.00 0.00 35.14 2.57
3436 3547 7.709601 TCTATGCTTTATCTACCCTCATAGGA 58.290 38.462 0.00 0.00 37.67 2.94
3437 3548 6.865834 ATGCTTTATCTACCCTCATAGGAG 57.134 41.667 0.00 0.00 37.67 3.69
3438 3549 4.528596 TGCTTTATCTACCCTCATAGGAGC 59.471 45.833 0.00 0.00 37.67 4.70
3439 3550 4.528596 GCTTTATCTACCCTCATAGGAGCA 59.471 45.833 0.00 0.00 37.67 4.26
3440 3551 5.188751 GCTTTATCTACCCTCATAGGAGCAT 59.811 44.000 0.00 0.00 37.67 3.79
3441 3552 6.611613 TTTATCTACCCTCATAGGAGCATG 57.388 41.667 0.00 0.00 37.67 4.06
3442 3553 2.251818 TCTACCCTCATAGGAGCATGC 58.748 52.381 10.51 10.51 37.67 4.06
3443 3554 1.973515 CTACCCTCATAGGAGCATGCA 59.026 52.381 21.98 0.00 37.67 3.96
3444 3555 0.763652 ACCCTCATAGGAGCATGCAG 59.236 55.000 21.98 6.20 37.67 4.41
3445 3556 1.054231 CCCTCATAGGAGCATGCAGA 58.946 55.000 21.98 6.63 37.67 4.26
3446 3557 1.419012 CCCTCATAGGAGCATGCAGAA 59.581 52.381 21.98 2.19 37.67 3.02
3447 3558 2.040012 CCCTCATAGGAGCATGCAGAAT 59.960 50.000 21.98 4.72 37.67 2.40
3448 3559 3.262660 CCCTCATAGGAGCATGCAGAATA 59.737 47.826 21.98 7.41 37.67 1.75
3449 3560 4.252073 CCTCATAGGAGCATGCAGAATAC 58.748 47.826 21.98 0.00 37.67 1.89
3450 3561 4.020396 CCTCATAGGAGCATGCAGAATACT 60.020 45.833 21.98 7.61 37.67 2.12
3451 3562 5.512749 CCTCATAGGAGCATGCAGAATACTT 60.513 44.000 21.98 0.00 37.67 2.24
3452 3563 5.545588 TCATAGGAGCATGCAGAATACTTC 58.454 41.667 21.98 5.57 0.00 3.01
3453 3564 3.205784 AGGAGCATGCAGAATACTTCC 57.794 47.619 21.98 14.99 0.00 3.46
3454 3565 2.776536 AGGAGCATGCAGAATACTTCCT 59.223 45.455 21.98 17.09 0.00 3.36
3455 3566 3.137533 GGAGCATGCAGAATACTTCCTC 58.862 50.000 21.98 3.43 0.00 3.71
3456 3567 3.137533 GAGCATGCAGAATACTTCCTCC 58.862 50.000 21.98 0.00 0.00 4.30
3457 3568 1.869767 GCATGCAGAATACTTCCTCCG 59.130 52.381 14.21 0.00 0.00 4.63
3458 3569 2.743183 GCATGCAGAATACTTCCTCCGT 60.743 50.000 14.21 0.00 0.00 4.69
3459 3570 3.535561 CATGCAGAATACTTCCTCCGTT 58.464 45.455 0.00 0.00 0.00 4.44
3460 3571 3.247006 TGCAGAATACTTCCTCCGTTC 57.753 47.619 0.00 0.00 0.00 3.95
3461 3572 2.093658 TGCAGAATACTTCCTCCGTTCC 60.094 50.000 0.00 0.00 0.00 3.62
3462 3573 2.168728 GCAGAATACTTCCTCCGTTCCT 59.831 50.000 0.00 0.00 0.00 3.36
3463 3574 3.383825 GCAGAATACTTCCTCCGTTCCTA 59.616 47.826 0.00 0.00 0.00 2.94
3464 3575 4.142004 GCAGAATACTTCCTCCGTTCCTAA 60.142 45.833 0.00 0.00 0.00 2.69
3465 3576 5.626116 GCAGAATACTTCCTCCGTTCCTAAA 60.626 44.000 0.00 0.00 0.00 1.85
3466 3577 6.583562 CAGAATACTTCCTCCGTTCCTAAAT 58.416 40.000 0.00 0.00 0.00 1.40
3467 3578 7.686127 GCAGAATACTTCCTCCGTTCCTAAATA 60.686 40.741 0.00 0.00 0.00 1.40
3468 3579 8.368668 CAGAATACTTCCTCCGTTCCTAAATAT 58.631 37.037 0.00 0.00 0.00 1.28
3469 3580 9.597681 AGAATACTTCCTCCGTTCCTAAATATA 57.402 33.333 0.00 0.00 0.00 0.86
3472 3583 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3473 3584 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3474 3585 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3475 3586 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
3476 3587 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
3477 3588 8.202137 TCCTCCGTTCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
3478 3589 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3493 3604 6.783708 AGTCTTTGTAGAGATTCCACTAGG 57.216 41.667 0.00 0.00 0.00 3.02
3494 3605 6.257586 AGTCTTTGTAGAGATTCCACTAGGT 58.742 40.000 0.00 0.00 35.89 3.08
3495 3606 6.153680 AGTCTTTGTAGAGATTCCACTAGGTG 59.846 42.308 0.00 0.00 35.89 4.00
3510 3621 4.395542 CACTAGGTGGACTATATACGGAGC 59.604 50.000 0.00 0.00 0.00 4.70
3511 3622 3.520691 AGGTGGACTATATACGGAGCA 57.479 47.619 0.00 0.00 0.00 4.26
3512 3623 3.840991 AGGTGGACTATATACGGAGCAA 58.159 45.455 0.00 0.00 0.00 3.91
3513 3624 4.220724 AGGTGGACTATATACGGAGCAAA 58.779 43.478 0.00 0.00 0.00 3.68
3514 3625 4.652421 AGGTGGACTATATACGGAGCAAAA 59.348 41.667 0.00 0.00 0.00 2.44
3515 3626 5.307196 AGGTGGACTATATACGGAGCAAAAT 59.693 40.000 0.00 0.00 0.00 1.82
3516 3627 5.408604 GGTGGACTATATACGGAGCAAAATG 59.591 44.000 0.00 0.00 0.00 2.32
3517 3628 6.220930 GTGGACTATATACGGAGCAAAATGA 58.779 40.000 0.00 0.00 0.00 2.57
3518 3629 6.704493 GTGGACTATATACGGAGCAAAATGAA 59.296 38.462 0.00 0.00 0.00 2.57
3519 3630 7.387948 GTGGACTATATACGGAGCAAAATGAAT 59.612 37.037 0.00 0.00 0.00 2.57
3520 3631 7.387673 TGGACTATATACGGAGCAAAATGAATG 59.612 37.037 0.00 0.00 0.00 2.67
3521 3632 7.602644 GGACTATATACGGAGCAAAATGAATGA 59.397 37.037 0.00 0.00 0.00 2.57
3522 3633 8.902540 ACTATATACGGAGCAAAATGAATGAA 57.097 30.769 0.00 0.00 0.00 2.57
3523 3634 9.507329 ACTATATACGGAGCAAAATGAATGAAT 57.493 29.630 0.00 0.00 0.00 2.57
3524 3635 9.979270 CTATATACGGAGCAAAATGAATGAATC 57.021 33.333 0.00 0.00 0.00 2.52
3525 3636 6.949352 ATACGGAGCAAAATGAATGAATCT 57.051 33.333 0.00 0.00 0.00 2.40
3526 3637 9.725019 ATATACGGAGCAAAATGAATGAATCTA 57.275 29.630 0.00 0.00 0.00 1.98
3527 3638 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
3528 3639 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
3529 3640 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
3530 3641 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
3531 3642 7.542025 GGAGCAAAATGAATGAATCTACACTT 58.458 34.615 0.00 0.00 0.00 3.16
3532 3643 8.677300 GGAGCAAAATGAATGAATCTACACTTA 58.323 33.333 0.00 0.00 0.00 2.24
3569 3680 9.866798 ATATACATCTGCATGTAGTTCATAGTG 57.133 33.333 10.80 3.14 46.52 2.74
3570 3681 6.225981 ACATCTGCATGTAGTTCATAGTGA 57.774 37.500 10.80 0.00 41.81 3.41
3571 3682 6.643388 ACATCTGCATGTAGTTCATAGTGAA 58.357 36.000 10.80 0.00 41.81 3.18
3572 3683 7.105588 ACATCTGCATGTAGTTCATAGTGAAA 58.894 34.615 10.80 0.00 41.81 2.69
3573 3684 7.772292 ACATCTGCATGTAGTTCATAGTGAAAT 59.228 33.333 10.80 0.00 41.81 2.17
3574 3685 7.776933 TCTGCATGTAGTTCATAGTGAAATC 57.223 36.000 10.80 0.00 38.22 2.17
3575 3686 7.559486 TCTGCATGTAGTTCATAGTGAAATCT 58.441 34.615 10.80 0.00 38.22 2.40
3576 3687 7.708322 TCTGCATGTAGTTCATAGTGAAATCTC 59.292 37.037 10.80 0.00 38.22 2.75
3577 3688 7.559486 TGCATGTAGTTCATAGTGAAATCTCT 58.441 34.615 0.00 0.00 38.22 3.10
3578 3689 8.695456 TGCATGTAGTTCATAGTGAAATCTCTA 58.305 33.333 0.00 0.00 38.22 2.43
3579 3690 8.973378 GCATGTAGTTCATAGTGAAATCTCTAC 58.027 37.037 0.00 4.24 38.22 2.59
3585 3696 9.646427 AGTTCATAGTGAAATCTCTACAAAGAC 57.354 33.333 0.00 0.00 38.22 3.01
3586 3697 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
3651 3771 4.785301 ACTGTTACATGCCTATGCTTCAT 58.215 39.130 0.00 0.00 37.85 2.57
3723 3843 8.967918 TGATAGTTTGCACTATAGAAGTACAGT 58.032 33.333 6.78 0.00 44.94 3.55
3733 3853 9.509855 CACTATAGAAGTACAGTTCTGTTCATC 57.490 37.037 6.78 8.39 37.36 2.92
3803 3924 7.477144 TCGTAGTTTGCATATTAGTGAATGG 57.523 36.000 0.00 0.00 0.00 3.16
3944 4065 8.032952 TGCTTTGAATTGTCTTGTACTATCAG 57.967 34.615 0.00 0.00 0.00 2.90
3949 4070 9.778741 TTGAATTGTCTTGTACTATCAGAAGTT 57.221 29.630 0.00 0.00 0.00 2.66
4437 4576 3.606777 CGTCTCACTTGTGTTATGGTACG 59.393 47.826 0.46 0.00 0.00 3.67
4477 4616 3.713003 TGTCAGATACACAGTCTCCCAT 58.287 45.455 0.00 0.00 31.43 4.00
4683 4822 3.957497 AGTGACAGTGGATTAGCTAGGAG 59.043 47.826 0.00 0.00 0.00 3.69
4818 4957 1.682854 CACTGAGGCAAAAGAAAGGCA 59.317 47.619 0.00 0.00 0.00 4.75
4837 4976 4.080526 AGGCAATTCCGGTGACTAATAGTT 60.081 41.667 0.00 0.00 40.77 2.24
4878 5018 4.725490 CTTCCCTGGTTCCTTCTGTTTAA 58.275 43.478 0.00 0.00 0.00 1.52
4931 5071 5.184864 TGCTGTTACATGGGTTTTTCTATGG 59.815 40.000 0.00 0.00 0.00 2.74
4991 5142 6.704493 GCTCCGATAATTACTGATGTAACCAA 59.296 38.462 0.00 0.00 40.91 3.67
5031 5182 6.214615 TGGATTAACATACACTGAAGGGAGAA 59.785 38.462 0.00 0.00 0.00 2.87
5032 5183 6.539103 GGATTAACATACACTGAAGGGAGAAC 59.461 42.308 0.00 0.00 0.00 3.01
5033 5184 4.974645 AACATACACTGAAGGGAGAACA 57.025 40.909 0.00 0.00 0.00 3.18
5034 5185 4.273148 ACATACACTGAAGGGAGAACAC 57.727 45.455 0.00 0.00 0.00 3.32
5035 5186 3.904339 ACATACACTGAAGGGAGAACACT 59.096 43.478 0.00 0.00 0.00 3.55
5036 5187 2.918712 ACACTGAAGGGAGAACACTG 57.081 50.000 0.00 0.00 0.00 3.66
5037 5188 2.398588 ACACTGAAGGGAGAACACTGA 58.601 47.619 0.00 0.00 0.00 3.41
5038 5189 2.771943 ACACTGAAGGGAGAACACTGAA 59.228 45.455 0.00 0.00 0.00 3.02
5039 5190 3.181461 ACACTGAAGGGAGAACACTGAAG 60.181 47.826 0.00 0.00 0.00 3.02
5040 5191 2.370189 ACTGAAGGGAGAACACTGAAGG 59.630 50.000 0.00 0.00 0.00 3.46
5041 5192 2.634940 CTGAAGGGAGAACACTGAAGGA 59.365 50.000 0.00 0.00 0.00 3.36
5042 5193 3.045634 TGAAGGGAGAACACTGAAGGAA 58.954 45.455 0.00 0.00 0.00 3.36
5043 5194 3.071602 TGAAGGGAGAACACTGAAGGAAG 59.928 47.826 0.00 0.00 0.00 3.46
5044 5195 2.977808 AGGGAGAACACTGAAGGAAGA 58.022 47.619 0.00 0.00 0.00 2.87
5076 5227 6.151691 ACGACTGGATGAACATTTTTCAATG 58.848 36.000 0.00 0.00 44.90 2.82
5096 6121 7.153985 TCAATGAAATCCTTAAAGCACCTTTG 58.846 34.615 0.72 0.00 35.21 2.77
5114 6139 7.432869 CACCTTTGGTTTTGAAGTGATTCATA 58.567 34.615 0.00 0.00 31.02 2.15
5125 6150 7.848223 TGAAGTGATTCATATTGTCATTCGT 57.152 32.000 0.00 0.00 0.00 3.85
5150 6200 3.585862 GCGTAAACTGTCCTTCTGATCA 58.414 45.455 0.00 0.00 0.00 2.92
5163 6213 8.108999 TGTCCTTCTGATCATGGATCTTAAAAA 58.891 33.333 13.14 0.00 39.56 1.94
5187 6237 6.926630 TTATTGTTTAACCAAATGCCCTCT 57.073 33.333 0.00 0.00 0.00 3.69
5197 6247 3.258872 CCAAATGCCCTCTCAATTGTGAA 59.741 43.478 11.11 0.00 31.88 3.18
5198 6248 4.491676 CAAATGCCCTCTCAATTGTGAAG 58.508 43.478 11.11 5.54 31.88 3.02
5203 6253 4.761739 TGCCCTCTCAATTGTGAAGTTAAG 59.238 41.667 11.11 0.00 31.88 1.85
5206 6260 6.234177 CCCTCTCAATTGTGAAGTTAAGAGT 58.766 40.000 11.11 0.00 31.88 3.24
5217 6271 7.406553 TGTGAAGTTAAGAGTGAAACAATTCG 58.593 34.615 0.00 0.00 41.43 3.34
5227 6281 0.039527 AAACAATTCGGCGGCAGTTC 60.040 50.000 10.53 0.00 0.00 3.01
5242 6297 5.578727 GCGGCAGTTCTATGATAATTCCTAG 59.421 44.000 0.00 0.00 0.00 3.02
5245 6300 7.543868 CGGCAGTTCTATGATAATTCCTAGAAG 59.456 40.741 0.00 0.00 38.77 2.85
5265 6320 4.175787 AGAGAACTCGTTGACATGGTAC 57.824 45.455 0.00 0.00 34.09 3.34
5270 6325 2.367567 ACTCGTTGACATGGTACTTGGT 59.632 45.455 0.00 0.00 0.00 3.67
5271 6326 3.181458 ACTCGTTGACATGGTACTTGGTT 60.181 43.478 0.00 0.00 0.00 3.67
5272 6327 3.811083 TCGTTGACATGGTACTTGGTTT 58.189 40.909 0.00 0.00 0.00 3.27
5273 6328 4.200874 TCGTTGACATGGTACTTGGTTTT 58.799 39.130 0.00 0.00 0.00 2.43
5274 6329 4.273969 TCGTTGACATGGTACTTGGTTTTC 59.726 41.667 0.00 0.00 0.00 2.29
5275 6330 4.274950 CGTTGACATGGTACTTGGTTTTCT 59.725 41.667 0.00 0.00 0.00 2.52
5276 6331 5.220970 CGTTGACATGGTACTTGGTTTTCTT 60.221 40.000 0.00 0.00 0.00 2.52
5277 6332 5.766150 TGACATGGTACTTGGTTTTCTTG 57.234 39.130 0.00 0.00 0.00 3.02
5278 6333 4.582656 TGACATGGTACTTGGTTTTCTTGG 59.417 41.667 0.00 0.00 0.00 3.61
5279 6334 4.798882 ACATGGTACTTGGTTTTCTTGGA 58.201 39.130 0.00 0.00 0.00 3.53
5280 6335 5.205056 ACATGGTACTTGGTTTTCTTGGAA 58.795 37.500 0.00 0.00 0.00 3.53
5281 6336 5.301805 ACATGGTACTTGGTTTTCTTGGAAG 59.698 40.000 0.00 0.00 0.00 3.46
5282 6337 4.862371 TGGTACTTGGTTTTCTTGGAAGT 58.138 39.130 0.00 0.00 0.00 3.01
5283 6338 5.265989 TGGTACTTGGTTTTCTTGGAAGTT 58.734 37.500 0.00 0.00 0.00 2.66
5284 6339 5.126384 TGGTACTTGGTTTTCTTGGAAGTTG 59.874 40.000 0.00 0.00 0.00 3.16
5285 6340 5.358725 GGTACTTGGTTTTCTTGGAAGTTGA 59.641 40.000 0.00 0.00 0.00 3.18
5286 6341 5.324784 ACTTGGTTTTCTTGGAAGTTGAC 57.675 39.130 0.00 0.00 0.00 3.18
5287 6342 4.770010 ACTTGGTTTTCTTGGAAGTTGACA 59.230 37.500 0.00 0.00 0.00 3.58
5288 6343 5.422012 ACTTGGTTTTCTTGGAAGTTGACAT 59.578 36.000 0.00 0.00 0.00 3.06
5289 6344 5.261209 TGGTTTTCTTGGAAGTTGACATG 57.739 39.130 0.00 0.00 0.00 3.21
5290 6345 4.099266 TGGTTTTCTTGGAAGTTGACATGG 59.901 41.667 0.00 0.00 0.00 3.66
5291 6346 4.099419 GGTTTTCTTGGAAGTTGACATGGT 59.901 41.667 0.00 0.00 0.00 3.55
5292 6347 5.300792 GGTTTTCTTGGAAGTTGACATGGTA 59.699 40.000 0.00 0.00 0.00 3.25
5293 6348 6.206498 GTTTTCTTGGAAGTTGACATGGTAC 58.794 40.000 0.00 0.00 0.00 3.34
5294 6349 4.974645 TCTTGGAAGTTGACATGGTACT 57.025 40.909 0.00 0.00 0.00 2.73
5295 6350 5.304686 TCTTGGAAGTTGACATGGTACTT 57.695 39.130 8.52 8.52 34.97 2.24
5296 6351 5.063204 TCTTGGAAGTTGACATGGTACTTG 58.937 41.667 12.29 0.00 32.58 3.16
5297 6352 3.750371 TGGAAGTTGACATGGTACTTGG 58.250 45.455 12.29 0.00 32.58 3.61
5298 6353 3.137544 TGGAAGTTGACATGGTACTTGGT 59.862 43.478 12.29 0.00 32.58 3.67
5299 6354 4.142038 GGAAGTTGACATGGTACTTGGTT 58.858 43.478 12.29 0.00 32.58 3.67
5300 6355 4.583073 GGAAGTTGACATGGTACTTGGTTT 59.417 41.667 12.29 0.00 32.58 3.27
5301 6356 5.068591 GGAAGTTGACATGGTACTTGGTTTT 59.931 40.000 12.29 0.00 32.58 2.43
5302 6357 5.767816 AGTTGACATGGTACTTGGTTTTC 57.232 39.130 0.00 0.00 0.00 2.29
5303 6358 5.445964 AGTTGACATGGTACTTGGTTTTCT 58.554 37.500 0.00 0.00 0.00 2.52
5304 6359 5.891551 AGTTGACATGGTACTTGGTTTTCTT 59.108 36.000 0.00 0.00 0.00 2.52
5305 6360 5.766150 TGACATGGTACTTGGTTTTCTTG 57.234 39.130 0.00 0.00 0.00 3.02
5306 6361 4.582656 TGACATGGTACTTGGTTTTCTTGG 59.417 41.667 0.00 0.00 0.00 3.61
5307 6362 4.798882 ACATGGTACTTGGTTTTCTTGGA 58.201 39.130 0.00 0.00 0.00 3.53
5308 6363 5.205056 ACATGGTACTTGGTTTTCTTGGAA 58.795 37.500 0.00 0.00 0.00 3.53
5309 6364 5.301805 ACATGGTACTTGGTTTTCTTGGAAG 59.698 40.000 0.00 0.00 0.00 3.46
5310 6365 4.211920 TGGTACTTGGTTTTCTTGGAAGG 58.788 43.478 0.00 0.00 0.00 3.46
5311 6366 4.079672 TGGTACTTGGTTTTCTTGGAAGGA 60.080 41.667 0.00 0.00 0.00 3.36
5312 6367 5.077564 GGTACTTGGTTTTCTTGGAAGGAT 58.922 41.667 0.00 0.00 0.00 3.24
5313 6368 5.048013 GGTACTTGGTTTTCTTGGAAGGATG 60.048 44.000 0.00 0.00 0.00 3.51
5314 6369 3.321968 ACTTGGTTTTCTTGGAAGGATGC 59.678 43.478 0.00 0.00 0.00 3.91
5315 6370 2.956132 TGGTTTTCTTGGAAGGATGCA 58.044 42.857 0.00 0.00 0.00 3.96
5316 6371 3.303938 TGGTTTTCTTGGAAGGATGCAA 58.696 40.909 0.00 0.00 35.42 4.08
5322 6377 0.881118 TTGGAAGGATGCAAGAACGC 59.119 50.000 0.00 0.00 31.30 4.84
5323 6378 0.960364 TGGAAGGATGCAAGAACGCC 60.960 55.000 0.00 0.00 0.00 5.68
5324 6379 0.960364 GGAAGGATGCAAGAACGCCA 60.960 55.000 0.00 0.00 0.00 5.69
5325 6380 0.449388 GAAGGATGCAAGAACGCCAG 59.551 55.000 0.00 0.00 0.00 4.85
5326 6381 0.036732 AAGGATGCAAGAACGCCAGA 59.963 50.000 0.00 0.00 0.00 3.86
5327 6382 0.674895 AGGATGCAAGAACGCCAGAC 60.675 55.000 0.00 0.00 0.00 3.51
5328 6383 1.648467 GGATGCAAGAACGCCAGACC 61.648 60.000 0.00 0.00 0.00 3.85
5329 6384 1.970917 GATGCAAGAACGCCAGACCG 61.971 60.000 0.00 0.00 0.00 4.79
5330 6385 2.357034 GCAAGAACGCCAGACCGA 60.357 61.111 0.00 0.00 0.00 4.69
5331 6386 2.668280 GCAAGAACGCCAGACCGAC 61.668 63.158 0.00 0.00 0.00 4.79
5332 6387 1.300620 CAAGAACGCCAGACCGACA 60.301 57.895 0.00 0.00 0.00 4.35
5333 6388 0.670546 CAAGAACGCCAGACCGACAT 60.671 55.000 0.00 0.00 0.00 3.06
5334 6389 0.670546 AAGAACGCCAGACCGACATG 60.671 55.000 0.00 0.00 0.00 3.21
5335 6390 2.740714 GAACGCCAGACCGACATGC 61.741 63.158 0.00 0.00 0.00 4.06
5350 6405 4.333649 CCGACATGCATATCCAACATATCC 59.666 45.833 0.00 0.00 0.00 2.59
5353 6408 6.478016 CGACATGCATATCCAACATATCCTAG 59.522 42.308 0.00 0.00 0.00 3.02
5354 6409 6.656902 ACATGCATATCCAACATATCCTAGG 58.343 40.000 0.82 0.82 0.00 3.02
5355 6410 6.216251 ACATGCATATCCAACATATCCTAGGT 59.784 38.462 9.08 0.00 0.00 3.08
5356 6411 7.402941 ACATGCATATCCAACATATCCTAGGTA 59.597 37.037 9.08 0.98 0.00 3.08
5357 6412 7.423844 TGCATATCCAACATATCCTAGGTAG 57.576 40.000 9.08 0.00 0.00 3.18
5359 6414 7.678171 TGCATATCCAACATATCCTAGGTAGAA 59.322 37.037 9.08 0.00 0.00 2.10
5360 6415 7.982354 GCATATCCAACATATCCTAGGTAGAAC 59.018 40.741 9.08 0.00 0.00 3.01
5361 6416 9.035890 CATATCCAACATATCCTAGGTAGAACA 57.964 37.037 9.08 0.00 0.00 3.18
5364 6419 8.418597 TCCAACATATCCTAGGTAGAACATAC 57.581 38.462 9.08 0.00 0.00 2.39
5365 6420 7.453752 TCCAACATATCCTAGGTAGAACATACC 59.546 40.741 9.08 0.00 37.86 2.73
5367 6422 8.816894 CAACATATCCTAGGTAGAACATACCAT 58.183 37.037 9.08 0.00 39.99 3.55
5369 6424 7.339721 ACATATCCTAGGTAGAACATACCATCG 59.660 40.741 9.08 0.00 39.99 3.84
5370 6425 4.404640 TCCTAGGTAGAACATACCATCGG 58.595 47.826 9.08 4.04 39.99 4.18
5371 6426 3.510360 CCTAGGTAGAACATACCATCGGG 59.490 52.174 0.00 0.14 39.99 5.14
5372 6427 2.326428 AGGTAGAACATACCATCGGGG 58.674 52.381 6.82 0.00 39.99 5.73
5373 6428 2.090943 AGGTAGAACATACCATCGGGGA 60.091 50.000 6.82 0.00 39.99 4.81
5374 6429 2.904434 GGTAGAACATACCATCGGGGAT 59.096 50.000 0.84 0.00 38.76 3.85
5375 6430 4.091549 GGTAGAACATACCATCGGGGATA 58.908 47.826 0.84 0.00 34.53 2.59
5376 6431 4.715297 GGTAGAACATACCATCGGGGATAT 59.285 45.833 0.84 0.00 34.53 1.63
5377 6432 5.189145 GGTAGAACATACCATCGGGGATATT 59.811 44.000 0.84 0.00 34.53 1.28
5378 6433 5.165961 AGAACATACCATCGGGGATATTG 57.834 43.478 0.84 0.00 34.53 1.90
5379 6434 4.844085 AGAACATACCATCGGGGATATTGA 59.156 41.667 0.84 0.00 34.53 2.57
5380 6435 5.488919 AGAACATACCATCGGGGATATTGAT 59.511 40.000 0.84 0.00 34.53 2.57
5381 6436 5.359194 ACATACCATCGGGGATATTGATC 57.641 43.478 0.84 0.00 34.53 2.92
5382 6437 5.032846 ACATACCATCGGGGATATTGATCT 58.967 41.667 0.84 0.00 34.53 2.75
5383 6438 5.488919 ACATACCATCGGGGATATTGATCTT 59.511 40.000 0.84 0.00 34.53 2.40
5384 6439 6.672218 ACATACCATCGGGGATATTGATCTTA 59.328 38.462 0.84 0.00 34.53 2.10
5385 6440 7.348274 ACATACCATCGGGGATATTGATCTTAT 59.652 37.037 0.84 0.00 34.53 1.73
5386 6441 8.870116 CATACCATCGGGGATATTGATCTTATA 58.130 37.037 0.84 0.00 34.53 0.98
5387 6442 7.937700 ACCATCGGGGATATTGATCTTATAT 57.062 36.000 0.84 0.00 41.15 0.86
5388 6443 8.337118 ACCATCGGGGATATTGATCTTATATT 57.663 34.615 0.84 0.00 41.15 1.28
5389 6444 8.213679 ACCATCGGGGATATTGATCTTATATTG 58.786 37.037 0.84 0.00 41.15 1.90
5390 6445 8.213679 CCATCGGGGATATTGATCTTATATTGT 58.786 37.037 0.00 0.00 40.01 2.71
5391 6446 9.618890 CATCGGGGATATTGATCTTATATTGTT 57.381 33.333 0.00 0.00 32.15 2.83
5392 6447 9.618890 ATCGGGGATATTGATCTTATATTGTTG 57.381 33.333 0.00 0.00 32.15 3.33
5393 6448 8.602424 TCGGGGATATTGATCTTATATTGTTGT 58.398 33.333 0.00 0.00 32.15 3.32
5394 6449 8.883731 CGGGGATATTGATCTTATATTGTTGTC 58.116 37.037 0.00 0.00 32.15 3.18
5395 6450 9.739276 GGGGATATTGATCTTATATTGTTGTCA 57.261 33.333 0.00 0.00 32.15 3.58
5425 6480 5.560722 TCTTGAAGGATACAAGAACACCA 57.439 39.130 0.00 0.00 46.68 4.17
5427 6482 5.306937 TCTTGAAGGATACAAGAACACCAGA 59.693 40.000 0.00 0.00 46.68 3.86
5428 6483 4.894784 TGAAGGATACAAGAACACCAGAC 58.105 43.478 0.00 0.00 41.41 3.51
5429 6484 3.983044 AGGATACAAGAACACCAGACC 57.017 47.619 0.00 0.00 41.41 3.85
5430 6485 2.233922 AGGATACAAGAACACCAGACCG 59.766 50.000 0.00 0.00 41.41 4.79
5431 6486 2.232941 GGATACAAGAACACCAGACCGA 59.767 50.000 0.00 0.00 0.00 4.69
5432 6487 2.806608 TACAAGAACACCAGACCGAC 57.193 50.000 0.00 0.00 0.00 4.79
5433 6488 0.828022 ACAAGAACACCAGACCGACA 59.172 50.000 0.00 0.00 0.00 4.35
5434 6489 1.416401 ACAAGAACACCAGACCGACAT 59.584 47.619 0.00 0.00 0.00 3.06
5435 6490 1.800586 CAAGAACACCAGACCGACATG 59.199 52.381 0.00 0.00 0.00 3.21
5436 6491 0.320771 AGAACACCAGACCGACATGC 60.321 55.000 0.00 0.00 0.00 4.06
5437 6492 0.602638 GAACACCAGACCGACATGCA 60.603 55.000 0.00 0.00 0.00 3.96
5438 6493 0.036732 AACACCAGACCGACATGCAT 59.963 50.000 0.00 0.00 0.00 3.96
5439 6494 0.901827 ACACCAGACCGACATGCATA 59.098 50.000 0.00 0.00 0.00 3.14
5440 6495 1.486310 ACACCAGACCGACATGCATAT 59.514 47.619 0.00 0.00 0.00 1.78
5441 6496 2.138320 CACCAGACCGACATGCATATC 58.862 52.381 0.00 0.00 0.00 1.63
5442 6497 1.070758 ACCAGACCGACATGCATATCC 59.929 52.381 0.00 0.00 0.00 2.59
5443 6498 1.070601 CCAGACCGACATGCATATCCA 59.929 52.381 0.00 0.00 0.00 3.41
5444 6499 2.485302 CCAGACCGACATGCATATCCAA 60.485 50.000 0.00 0.00 0.00 3.53
5445 6500 2.545526 CAGACCGACATGCATATCCAAC 59.454 50.000 0.00 0.00 0.00 3.77
5446 6501 2.170397 AGACCGACATGCATATCCAACA 59.830 45.455 0.00 0.00 0.00 3.33
5447 6502 3.141398 GACCGACATGCATATCCAACAT 58.859 45.455 0.00 0.00 0.00 2.71
5448 6503 4.040339 AGACCGACATGCATATCCAACATA 59.960 41.667 0.00 0.00 0.00 2.29
5449 6504 4.910195 ACCGACATGCATATCCAACATAT 58.090 39.130 0.00 0.00 0.00 1.78
5450 6505 4.937620 ACCGACATGCATATCCAACATATC 59.062 41.667 0.00 0.00 0.00 1.63
5451 6506 4.333649 CCGACATGCATATCCAACATATCC 59.666 45.833 0.00 0.00 0.00 2.59
5452 6507 5.181009 CGACATGCATATCCAACATATCCT 58.819 41.667 0.00 0.00 0.00 3.24
5453 6508 6.340522 CGACATGCATATCCAACATATCCTA 58.659 40.000 0.00 0.00 0.00 2.94
5454 6509 6.478016 CGACATGCATATCCAACATATCCTAG 59.522 42.308 0.00 0.00 0.00 3.02
5455 6510 6.656902 ACATGCATATCCAACATATCCTAGG 58.343 40.000 0.82 0.82 0.00 3.02
5456 6511 6.216251 ACATGCATATCCAACATATCCTAGGT 59.784 38.462 9.08 0.00 0.00 3.08
5457 6512 7.402941 ACATGCATATCCAACATATCCTAGGTA 59.597 37.037 9.08 0.98 0.00 3.08
5458 6513 7.423844 TGCATATCCAACATATCCTAGGTAG 57.576 40.000 9.08 0.00 0.00 3.18
5459 6514 7.189087 TGCATATCCAACATATCCTAGGTAGA 58.811 38.462 9.08 0.00 0.00 2.59
5460 6515 7.124298 TGCATATCCAACATATCCTAGGTAGAC 59.876 40.741 9.08 0.00 0.00 2.59
5461 6516 7.418025 GCATATCCAACATATCCTAGGTAGACC 60.418 44.444 9.08 0.00 0.00 3.85
5462 6517 5.412617 TCCAACATATCCTAGGTAGACCA 57.587 43.478 9.08 0.00 38.89 4.02
5463 6518 5.977533 TCCAACATATCCTAGGTAGACCAT 58.022 41.667 9.08 0.00 38.89 3.55
5464 6519 6.017192 TCCAACATATCCTAGGTAGACCATC 58.983 44.000 9.08 0.00 38.89 3.51
5465 6520 5.105716 CCAACATATCCTAGGTAGACCATCG 60.106 48.000 9.08 0.00 38.89 3.84
5466 6521 4.601084 ACATATCCTAGGTAGACCATCGG 58.399 47.826 9.08 0.00 38.89 4.18
5467 6522 2.606751 ATCCTAGGTAGACCATCGGG 57.393 55.000 9.08 0.00 38.89 5.14
5468 6523 0.481567 TCCTAGGTAGACCATCGGGG 59.518 60.000 9.08 0.00 44.81 5.73
5469 6524 0.481567 CCTAGGTAGACCATCGGGGA 59.518 60.000 0.00 0.00 41.15 4.81
5470 6525 1.077334 CCTAGGTAGACCATCGGGGAT 59.923 57.143 0.00 0.00 41.15 3.85
5471 6526 2.310945 CCTAGGTAGACCATCGGGGATA 59.689 54.545 0.00 0.00 41.15 2.59
5472 6527 3.052793 CCTAGGTAGACCATCGGGGATAT 60.053 52.174 0.00 0.00 41.15 1.63
5473 6528 3.562108 AGGTAGACCATCGGGGATATT 57.438 47.619 0.66 0.00 41.15 1.28
5474 6529 3.173965 AGGTAGACCATCGGGGATATTG 58.826 50.000 0.66 0.00 41.15 1.90
5475 6530 3.170717 GGTAGACCATCGGGGATATTGA 58.829 50.000 0.84 0.00 41.15 2.57
5476 6531 3.775316 GGTAGACCATCGGGGATATTGAT 59.225 47.826 0.84 0.00 41.15 2.57
5477 6532 4.141914 GGTAGACCATCGGGGATATTGATC 60.142 50.000 0.84 0.00 41.15 2.92
5478 6533 3.796111 AGACCATCGGGGATATTGATCT 58.204 45.455 0.84 0.00 41.15 2.75
5479 6534 4.171234 AGACCATCGGGGATATTGATCTT 58.829 43.478 0.84 0.00 41.15 2.40
5480 6535 5.342017 AGACCATCGGGGATATTGATCTTA 58.658 41.667 0.84 0.00 41.15 2.10
5481 6536 5.966935 AGACCATCGGGGATATTGATCTTAT 59.033 40.000 0.84 0.00 41.15 1.73
5482 6537 7.132805 AGACCATCGGGGATATTGATCTTATA 58.867 38.462 0.84 0.00 41.15 0.98
5483 6538 7.791766 AGACCATCGGGGATATTGATCTTATAT 59.208 37.037 0.84 0.00 41.15 0.86
5484 6539 8.337118 ACCATCGGGGATATTGATCTTATATT 57.663 34.615 0.84 0.00 41.15 1.28
5485 6540 8.213679 ACCATCGGGGATATTGATCTTATATTG 58.786 37.037 0.84 0.00 41.15 1.90
5486 6541 8.213679 CCATCGGGGATATTGATCTTATATTGT 58.786 37.037 0.00 0.00 40.01 2.71
5487 6542 9.618890 CATCGGGGATATTGATCTTATATTGTT 57.381 33.333 0.00 0.00 32.15 2.83
5488 6543 9.618890 ATCGGGGATATTGATCTTATATTGTTG 57.381 33.333 0.00 0.00 32.15 3.33
5489 6544 8.602424 TCGGGGATATTGATCTTATATTGTTGT 58.398 33.333 0.00 0.00 32.15 3.32
5490 6545 8.883731 CGGGGATATTGATCTTATATTGTTGTC 58.116 37.037 0.00 0.00 32.15 3.18
5491 6546 9.739276 GGGGATATTGATCTTATATTGTTGTCA 57.261 33.333 0.00 0.00 32.15 3.58
5556 6611 7.846311 TGCATATCCAACATATCCTAGGTAGAT 59.154 37.037 9.08 0.00 0.00 1.98
5560 6615 7.962995 TCCAACATATCCTAGGTAGATCATC 57.037 40.000 9.08 0.00 0.00 2.92
5561 6616 6.603599 TCCAACATATCCTAGGTAGATCATCG 59.396 42.308 9.08 0.00 0.00 3.84
5618 6679 2.808543 GCATTATGACCTGATCGTTCCC 59.191 50.000 0.00 0.00 0.00 3.97
5619 6680 3.744214 GCATTATGACCTGATCGTTCCCA 60.744 47.826 0.00 0.00 0.00 4.37
5620 6681 4.645535 CATTATGACCTGATCGTTCCCAT 58.354 43.478 0.00 0.00 0.00 4.00
5622 6683 1.866015 TGACCTGATCGTTCCCATCT 58.134 50.000 0.00 0.00 0.00 2.90
5623 6684 3.026707 TGACCTGATCGTTCCCATCTA 57.973 47.619 0.00 0.00 0.00 1.98
5624 6685 2.959030 TGACCTGATCGTTCCCATCTAG 59.041 50.000 0.00 0.00 0.00 2.43
5626 6687 1.001406 CCTGATCGTTCCCATCTAGCC 59.999 57.143 0.00 0.00 0.00 3.93
5631 6693 1.066430 TCGTTCCCATCTAGCCAACAC 60.066 52.381 0.00 0.00 0.00 3.32
5661 6723 7.496920 TGAACTTGAGATCGAAATCAATAGCAT 59.503 33.333 13.99 2.60 35.04 3.79
5665 6727 7.790823 TGAGATCGAAATCAATAGCATCAAA 57.209 32.000 0.00 0.00 34.07 2.69
5685 6747 5.767665 TCAAACATATTGGCTTGTGTAGTGT 59.232 36.000 0.00 0.00 0.00 3.55
5704 6766 9.647797 TGTAGTGTTTTCTACCTATGTATGTTG 57.352 33.333 0.00 0.00 39.39 3.33
5723 6785 0.310543 GCAGTTTGTGACATCGGCAA 59.689 50.000 8.02 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 3.637769 ACAAGGTGGTAAGAAGCCAAAA 58.362 40.909 0.00 0.00 37.81 2.44
363 365 0.765135 TTCGAACCCAGGACCTCCAA 60.765 55.000 0.00 0.00 38.89 3.53
420 422 5.903198 CCTGGAGAAGGGAATTTCTAGAT 57.097 43.478 0.00 0.00 43.15 1.98
945 949 3.430098 GCTTGTGGTCTGTCCTCTATCTG 60.430 52.174 0.00 0.00 37.07 2.90
973 980 3.694566 CCAAAGACTGTATTTAGGTGGGC 59.305 47.826 0.00 0.00 0.00 5.36
980 987 5.588648 GCCATACTGCCAAAGACTGTATTTA 59.411 40.000 0.00 0.00 31.99 1.40
1029 1036 2.014857 CTCACATGGATCAGCACCAAG 58.985 52.381 0.00 0.00 40.93 3.61
1105 1112 0.524862 GGCCAGCTTGACAATGACTG 59.475 55.000 0.00 6.19 0.00 3.51
1293 1300 5.288804 TGAAAACTTAGAACAAATGCAGCC 58.711 37.500 0.00 0.00 0.00 4.85
1400 1409 4.060900 CTGGAACCATCATAATGAGACCG 58.939 47.826 0.00 0.00 34.61 4.79
1555 1564 9.132521 CTGTCAGTTTCCAAAATATTGATTGTC 57.867 33.333 0.00 0.00 38.94 3.18
1683 1694 8.486942 AGTATGTAACAATGCTACCAGGTATA 57.513 34.615 0.00 0.00 0.00 1.47
2780 2890 9.107177 CAGAAAATCATAAACTACATCAGAGCT 57.893 33.333 0.00 0.00 0.00 4.09
3021 3132 6.016276 ACTGAGAACGCCAAACTTGAAATATT 60.016 34.615 0.00 0.00 0.00 1.28
3145 3256 4.936685 AATAGGTTCCAGCTTCTCCTTT 57.063 40.909 2.54 0.00 0.00 3.11
3434 3545 3.137533 GAGGAAGTATTCTGCATGCTCC 58.862 50.000 20.33 14.34 46.56 4.70
3435 3546 3.137533 GGAGGAAGTATTCTGCATGCTC 58.862 50.000 20.33 4.95 46.56 4.26
3436 3547 2.484417 CGGAGGAAGTATTCTGCATGCT 60.484 50.000 20.33 0.00 46.56 3.79
3437 3548 1.869767 CGGAGGAAGTATTCTGCATGC 59.130 52.381 11.82 11.82 46.56 4.06
3438 3549 3.185246 ACGGAGGAAGTATTCTGCATG 57.815 47.619 0.00 0.00 46.56 4.06
3439 3550 3.432326 GGAACGGAGGAAGTATTCTGCAT 60.432 47.826 0.00 0.00 46.56 3.96
3440 3551 2.093658 GGAACGGAGGAAGTATTCTGCA 60.094 50.000 0.00 0.00 46.56 4.41
3441 3552 2.168728 AGGAACGGAGGAAGTATTCTGC 59.831 50.000 0.00 0.00 46.56 4.26
3442 3553 5.593679 TTAGGAACGGAGGAAGTATTCTG 57.406 43.478 0.00 0.00 46.56 3.02
3443 3554 6.809976 ATTTAGGAACGGAGGAAGTATTCT 57.190 37.500 0.00 0.00 46.56 2.40
3446 3557 9.377238 ACTTATATTTAGGAACGGAGGAAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
3447 3558 8.773033 ACTTATATTTAGGAACGGAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
3448 3559 7.564292 AGACTTATATTTAGGAACGGAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
3449 3560 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
3450 3561 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
3451 3562 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
3452 3563 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3453 3564 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3467 3578 8.919145 CCTAGTGGAATCTCTACAAAGACTTAT 58.081 37.037 0.00 0.00 34.57 1.73
3468 3579 7.894364 ACCTAGTGGAATCTCTACAAAGACTTA 59.106 37.037 0.00 0.00 37.04 2.24
3469 3580 6.726764 ACCTAGTGGAATCTCTACAAAGACTT 59.273 38.462 0.00 0.00 37.04 3.01
3470 3581 6.153680 CACCTAGTGGAATCTCTACAAAGACT 59.846 42.308 0.00 0.00 37.04 3.24
3471 3582 6.334202 CACCTAGTGGAATCTCTACAAAGAC 58.666 44.000 0.00 0.00 37.04 3.01
3472 3583 6.531503 CACCTAGTGGAATCTCTACAAAGA 57.468 41.667 0.00 0.00 37.04 2.52
3487 3598 4.395542 GCTCCGTATATAGTCCACCTAGTG 59.604 50.000 0.00 0.00 0.00 2.74
3488 3599 4.042560 TGCTCCGTATATAGTCCACCTAGT 59.957 45.833 0.00 0.00 0.00 2.57
3489 3600 4.586884 TGCTCCGTATATAGTCCACCTAG 58.413 47.826 0.00 0.00 0.00 3.02
3490 3601 4.645863 TGCTCCGTATATAGTCCACCTA 57.354 45.455 0.00 0.00 0.00 3.08
3491 3602 3.520691 TGCTCCGTATATAGTCCACCT 57.479 47.619 0.00 0.00 0.00 4.00
3492 3603 4.595762 TTTGCTCCGTATATAGTCCACC 57.404 45.455 0.00 0.00 0.00 4.61
3493 3604 6.220930 TCATTTTGCTCCGTATATAGTCCAC 58.779 40.000 0.00 0.00 0.00 4.02
3494 3605 6.413783 TCATTTTGCTCCGTATATAGTCCA 57.586 37.500 0.00 0.00 0.00 4.02
3495 3606 7.602644 TCATTCATTTTGCTCCGTATATAGTCC 59.397 37.037 0.00 0.00 0.00 3.85
3496 3607 8.534333 TCATTCATTTTGCTCCGTATATAGTC 57.466 34.615 0.00 0.00 0.00 2.59
3497 3608 8.902540 TTCATTCATTTTGCTCCGTATATAGT 57.097 30.769 0.00 0.00 0.00 2.12
3498 3609 9.979270 GATTCATTCATTTTGCTCCGTATATAG 57.021 33.333 0.00 0.00 0.00 1.31
3499 3610 9.725019 AGATTCATTCATTTTGCTCCGTATATA 57.275 29.630 0.00 0.00 0.00 0.86
3500 3611 8.627208 AGATTCATTCATTTTGCTCCGTATAT 57.373 30.769 0.00 0.00 0.00 0.86
3501 3612 8.988934 GTAGATTCATTCATTTTGCTCCGTATA 58.011 33.333 0.00 0.00 0.00 1.47
3502 3613 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
3503 3614 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
3504 3615 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
3505 3616 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
3506 3617 7.093322 AGTGTAGATTCATTCATTTTGCTCC 57.907 36.000 0.00 0.00 0.00 4.70
3543 3654 9.866798 CACTATGAACTACATGCAGATGTATAT 57.133 33.333 0.00 0.00 42.87 0.86
3544 3655 9.077885 TCACTATGAACTACATGCAGATGTATA 57.922 33.333 0.00 0.00 42.87 1.47
3545 3656 7.955918 TCACTATGAACTACATGCAGATGTAT 58.044 34.615 0.00 0.00 42.87 2.29
3546 3657 7.346751 TCACTATGAACTACATGCAGATGTA 57.653 36.000 0.00 0.00 41.27 2.29
3547 3658 6.225981 TCACTATGAACTACATGCAGATGT 57.774 37.500 0.00 0.00 45.24 3.06
3548 3659 7.543947 TTTCACTATGAACTACATGCAGATG 57.456 36.000 0.00 0.00 35.89 2.90
3549 3660 8.209584 AGATTTCACTATGAACTACATGCAGAT 58.790 33.333 0.00 0.00 35.89 2.90
3550 3661 7.559486 AGATTTCACTATGAACTACATGCAGA 58.441 34.615 0.00 0.00 35.89 4.26
3551 3662 7.710044 AGAGATTTCACTATGAACTACATGCAG 59.290 37.037 0.00 0.00 35.89 4.41
3552 3663 7.559486 AGAGATTTCACTATGAACTACATGCA 58.441 34.615 0.00 0.00 35.89 3.96
3553 3664 8.973378 GTAGAGATTTCACTATGAACTACATGC 58.027 37.037 10.10 0.00 35.89 4.06
3559 3670 9.646427 GTCTTTGTAGAGATTTCACTATGAACT 57.354 33.333 0.00 0.00 35.89 3.01
3560 3671 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
3578 3689 9.907229 CCTCCTTTCCTAAATATAAGTCTTTGT 57.093 33.333 0.00 0.00 0.00 2.83
3579 3690 9.343539 CCCTCCTTTCCTAAATATAAGTCTTTG 57.656 37.037 0.00 0.00 0.00 2.77
3580 3691 9.292751 TCCCTCCTTTCCTAAATATAAGTCTTT 57.707 33.333 0.00 0.00 0.00 2.52
3581 3692 8.871570 TCCCTCCTTTCCTAAATATAAGTCTT 57.128 34.615 0.00 0.00 0.00 3.01
3582 3693 8.074991 ACTCCCTCCTTTCCTAAATATAAGTCT 58.925 37.037 0.00 0.00 0.00 3.24
3583 3694 8.265108 ACTCCCTCCTTTCCTAAATATAAGTC 57.735 38.462 0.00 0.00 0.00 3.01
3584 3695 9.156940 GTACTCCCTCCTTTCCTAAATATAAGT 57.843 37.037 0.00 0.00 0.00 2.24
3585 3696 9.155785 TGTACTCCCTCCTTTCCTAAATATAAG 57.844 37.037 0.00 0.00 0.00 1.73
3586 3697 9.684702 ATGTACTCCCTCCTTTCCTAAATATAA 57.315 33.333 0.00 0.00 0.00 0.98
3587 3698 9.101325 CATGTACTCCCTCCTTTCCTAAATATA 57.899 37.037 0.00 0.00 0.00 0.86
3588 3699 7.474936 GCATGTACTCCCTCCTTTCCTAAATAT 60.475 40.741 0.00 0.00 0.00 1.28
3589 3700 6.183361 GCATGTACTCCCTCCTTTCCTAAATA 60.183 42.308 0.00 0.00 0.00 1.40
3590 3701 5.398012 GCATGTACTCCCTCCTTTCCTAAAT 60.398 44.000 0.00 0.00 0.00 1.40
3591 3702 4.080526 GCATGTACTCCCTCCTTTCCTAAA 60.081 45.833 0.00 0.00 0.00 1.85
3592 3703 3.454812 GCATGTACTCCCTCCTTTCCTAA 59.545 47.826 0.00 0.00 0.00 2.69
3593 3704 3.039011 GCATGTACTCCCTCCTTTCCTA 58.961 50.000 0.00 0.00 0.00 2.94
3594 3705 1.840635 GCATGTACTCCCTCCTTTCCT 59.159 52.381 0.00 0.00 0.00 3.36
3595 3706 1.559682 TGCATGTACTCCCTCCTTTCC 59.440 52.381 0.00 0.00 0.00 3.13
3596 3707 3.350219 TTGCATGTACTCCCTCCTTTC 57.650 47.619 0.00 0.00 0.00 2.62
3597 3708 3.806949 TTTGCATGTACTCCCTCCTTT 57.193 42.857 0.00 0.00 0.00 3.11
3598 3709 3.181434 TGTTTTGCATGTACTCCCTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
3599 3710 2.375174 TGTTTTGCATGTACTCCCTCCT 59.625 45.455 0.00 0.00 0.00 3.69
3600 3711 2.790433 TGTTTTGCATGTACTCCCTCC 58.210 47.619 0.00 0.00 0.00 4.30
3601 3712 5.163513 CAAATGTTTTGCATGTACTCCCTC 58.836 41.667 0.00 0.00 37.96 4.30
3602 3713 4.588528 ACAAATGTTTTGCATGTACTCCCT 59.411 37.500 0.00 0.00 37.96 4.20
3603 3714 4.881920 ACAAATGTTTTGCATGTACTCCC 58.118 39.130 0.00 0.00 37.96 4.30
3733 3853 9.807921 AATACATGGGTTAAGAGGTTAATATGG 57.192 33.333 0.00 0.00 30.76 2.74
4437 4576 4.047822 GACATCATCGACCATCTGAGAAC 58.952 47.826 0.00 0.00 0.00 3.01
4477 4616 1.822114 TTTCCATGGGCTCGACGACA 61.822 55.000 13.02 0.00 0.00 4.35
4683 4822 4.909880 GTCTGCGAAATTTGTTGTACCTTC 59.090 41.667 0.00 0.00 0.00 3.46
4818 4957 5.250200 TGCAAACTATTAGTCACCGGAATT 58.750 37.500 9.46 0.00 0.00 2.17
4837 4976 1.078214 CTCCGAAGCCATCCTGCAA 60.078 57.895 0.00 0.00 0.00 4.08
4863 5003 5.354513 GGTCAGCTATTAAACAGAAGGAACC 59.645 44.000 0.00 0.00 0.00 3.62
4878 5018 4.816109 TGAGCCAGGGTCAGCTAT 57.184 55.556 17.89 0.00 40.11 2.97
4931 5071 1.244816 GTACCAAACAAGGCCACTCC 58.755 55.000 5.01 0.00 0.00 3.85
4991 5142 0.786435 ATCCAAAGAAGCTTGGGGGT 59.214 50.000 2.10 0.00 45.16 4.95
5031 5182 6.812160 GTCGTACAAATATCTTCCTTCAGTGT 59.188 38.462 0.00 0.00 0.00 3.55
5032 5183 7.009631 CAGTCGTACAAATATCTTCCTTCAGTG 59.990 40.741 0.00 0.00 0.00 3.66
5033 5184 7.036220 CAGTCGTACAAATATCTTCCTTCAGT 58.964 38.462 0.00 0.00 0.00 3.41
5034 5185 6.477033 CCAGTCGTACAAATATCTTCCTTCAG 59.523 42.308 0.00 0.00 0.00 3.02
5035 5186 6.153851 TCCAGTCGTACAAATATCTTCCTTCA 59.846 38.462 0.00 0.00 0.00 3.02
5036 5187 6.570692 TCCAGTCGTACAAATATCTTCCTTC 58.429 40.000 0.00 0.00 0.00 3.46
5037 5188 6.540438 TCCAGTCGTACAAATATCTTCCTT 57.460 37.500 0.00 0.00 0.00 3.36
5038 5189 6.323996 TCATCCAGTCGTACAAATATCTTCCT 59.676 38.462 0.00 0.00 0.00 3.36
5039 5190 6.513180 TCATCCAGTCGTACAAATATCTTCC 58.487 40.000 0.00 0.00 0.00 3.46
5040 5191 7.491372 TGTTCATCCAGTCGTACAAATATCTTC 59.509 37.037 0.00 0.00 0.00 2.87
5041 5192 7.327975 TGTTCATCCAGTCGTACAAATATCTT 58.672 34.615 0.00 0.00 0.00 2.40
5042 5193 6.873997 TGTTCATCCAGTCGTACAAATATCT 58.126 36.000 0.00 0.00 0.00 1.98
5043 5194 7.715265 ATGTTCATCCAGTCGTACAAATATC 57.285 36.000 0.00 0.00 0.00 1.63
5044 5195 8.506168 AAATGTTCATCCAGTCGTACAAATAT 57.494 30.769 0.00 0.00 0.00 1.28
5076 5227 5.468540 ACCAAAGGTGCTTTAAGGATTTC 57.531 39.130 0.00 0.00 32.98 2.17
5096 6121 9.643693 AATGACAATATGAATCACTTCAAAACC 57.356 29.630 0.00 0.00 44.29 3.27
5125 6150 3.575256 TCAGAAGGACAGTTTACGCCTTA 59.425 43.478 0.00 0.00 40.64 2.69
5163 6213 7.180051 TGAGAGGGCATTTGGTTAAACAATAAT 59.820 33.333 6.80 0.00 0.00 1.28
5169 6219 4.864704 TTGAGAGGGCATTTGGTTAAAC 57.135 40.909 0.00 0.00 0.00 2.01
5187 6237 8.275015 TGTTTCACTCTTAACTTCACAATTGA 57.725 30.769 13.59 0.00 0.00 2.57
5197 6247 4.084013 CGCCGAATTGTTTCACTCTTAACT 60.084 41.667 0.00 0.00 0.00 2.24
5198 6248 4.148891 CGCCGAATTGTTTCACTCTTAAC 58.851 43.478 0.00 0.00 0.00 2.01
5203 6253 0.454452 GCCGCCGAATTGTTTCACTC 60.454 55.000 0.00 0.00 0.00 3.51
5206 6260 1.169661 ACTGCCGCCGAATTGTTTCA 61.170 50.000 0.00 0.00 0.00 2.69
5217 6271 3.437049 GGAATTATCATAGAACTGCCGCC 59.563 47.826 0.00 0.00 0.00 6.13
5242 6297 3.654414 ACCATGTCAACGAGTTCTCTTC 58.346 45.455 0.00 0.00 0.00 2.87
5245 6300 4.175787 AGTACCATGTCAACGAGTTCTC 57.824 45.455 0.00 0.00 0.00 2.87
5265 6320 5.323371 TGTCAACTTCCAAGAAAACCAAG 57.677 39.130 0.00 0.00 0.00 3.61
5270 6325 6.126409 AGTACCATGTCAACTTCCAAGAAAA 58.874 36.000 0.00 0.00 0.00 2.29
5271 6326 5.690865 AGTACCATGTCAACTTCCAAGAAA 58.309 37.500 0.00 0.00 0.00 2.52
5272 6327 5.304686 AGTACCATGTCAACTTCCAAGAA 57.695 39.130 0.00 0.00 0.00 2.52
5273 6328 4.974645 AGTACCATGTCAACTTCCAAGA 57.025 40.909 0.00 0.00 0.00 3.02
5274 6329 4.216257 CCAAGTACCATGTCAACTTCCAAG 59.784 45.833 0.00 0.00 31.21 3.61
5275 6330 4.141287 CCAAGTACCATGTCAACTTCCAA 58.859 43.478 0.00 0.00 31.21 3.53
5276 6331 3.137544 ACCAAGTACCATGTCAACTTCCA 59.862 43.478 0.00 0.00 31.21 3.53
5277 6332 3.751518 ACCAAGTACCATGTCAACTTCC 58.248 45.455 0.00 0.00 31.21 3.46
5278 6333 5.767816 AAACCAAGTACCATGTCAACTTC 57.232 39.130 0.00 0.00 31.21 3.01
5279 6334 5.891551 AGAAAACCAAGTACCATGTCAACTT 59.108 36.000 0.00 0.00 33.82 2.66
5280 6335 5.445964 AGAAAACCAAGTACCATGTCAACT 58.554 37.500 0.00 0.00 0.00 3.16
5281 6336 5.767816 AGAAAACCAAGTACCATGTCAAC 57.232 39.130 0.00 0.00 0.00 3.18
5282 6337 5.068460 CCAAGAAAACCAAGTACCATGTCAA 59.932 40.000 0.00 0.00 0.00 3.18
5283 6338 4.582656 CCAAGAAAACCAAGTACCATGTCA 59.417 41.667 0.00 0.00 0.00 3.58
5284 6339 4.825085 TCCAAGAAAACCAAGTACCATGTC 59.175 41.667 0.00 0.00 0.00 3.06
5285 6340 4.798882 TCCAAGAAAACCAAGTACCATGT 58.201 39.130 0.00 0.00 0.00 3.21
5286 6341 5.278957 CCTTCCAAGAAAACCAAGTACCATG 60.279 44.000 0.00 0.00 0.00 3.66
5287 6342 4.832823 CCTTCCAAGAAAACCAAGTACCAT 59.167 41.667 0.00 0.00 0.00 3.55
5288 6343 4.079672 TCCTTCCAAGAAAACCAAGTACCA 60.080 41.667 0.00 0.00 0.00 3.25
5289 6344 4.466827 TCCTTCCAAGAAAACCAAGTACC 58.533 43.478 0.00 0.00 0.00 3.34
5290 6345 5.564848 GCATCCTTCCAAGAAAACCAAGTAC 60.565 44.000 0.00 0.00 0.00 2.73
5291 6346 4.522789 GCATCCTTCCAAGAAAACCAAGTA 59.477 41.667 0.00 0.00 0.00 2.24
5292 6347 3.321968 GCATCCTTCCAAGAAAACCAAGT 59.678 43.478 0.00 0.00 0.00 3.16
5293 6348 3.321682 TGCATCCTTCCAAGAAAACCAAG 59.678 43.478 0.00 0.00 0.00 3.61
5294 6349 3.303938 TGCATCCTTCCAAGAAAACCAA 58.696 40.909 0.00 0.00 0.00 3.67
5295 6350 2.956132 TGCATCCTTCCAAGAAAACCA 58.044 42.857 0.00 0.00 0.00 3.67
5296 6351 3.573967 TCTTGCATCCTTCCAAGAAAACC 59.426 43.478 0.98 0.00 43.06 3.27
5297 6352 4.853924 TCTTGCATCCTTCCAAGAAAAC 57.146 40.909 0.98 0.00 43.06 2.43
5301 6356 2.426522 CGTTCTTGCATCCTTCCAAGA 58.573 47.619 0.00 0.00 43.98 3.02
5302 6357 1.135575 GCGTTCTTGCATCCTTCCAAG 60.136 52.381 0.00 0.00 39.74 3.61
5303 6358 0.881118 GCGTTCTTGCATCCTTCCAA 59.119 50.000 0.00 0.00 34.15 3.53
5304 6359 0.960364 GGCGTTCTTGCATCCTTCCA 60.960 55.000 0.00 0.00 36.28 3.53
5305 6360 0.960364 TGGCGTTCTTGCATCCTTCC 60.960 55.000 0.00 0.00 36.28 3.46
5306 6361 0.449388 CTGGCGTTCTTGCATCCTTC 59.551 55.000 0.00 0.00 36.28 3.46
5307 6362 0.036732 TCTGGCGTTCTTGCATCCTT 59.963 50.000 0.00 0.00 36.28 3.36
5308 6363 0.674895 GTCTGGCGTTCTTGCATCCT 60.675 55.000 0.00 0.00 36.28 3.24
5309 6364 1.648467 GGTCTGGCGTTCTTGCATCC 61.648 60.000 0.00 0.00 36.28 3.51
5310 6365 1.796796 GGTCTGGCGTTCTTGCATC 59.203 57.895 0.00 0.00 36.28 3.91
5311 6366 2.034879 CGGTCTGGCGTTCTTGCAT 61.035 57.895 0.00 0.00 36.28 3.96
5312 6367 2.664851 CGGTCTGGCGTTCTTGCA 60.665 61.111 0.00 0.00 36.28 4.08
5313 6368 2.357034 TCGGTCTGGCGTTCTTGC 60.357 61.111 0.00 0.00 0.00 4.01
5314 6369 0.670546 ATGTCGGTCTGGCGTTCTTG 60.671 55.000 0.00 0.00 0.00 3.02
5315 6370 0.670546 CATGTCGGTCTGGCGTTCTT 60.671 55.000 0.00 0.00 0.00 2.52
5316 6371 1.079819 CATGTCGGTCTGGCGTTCT 60.080 57.895 0.00 0.00 0.00 3.01
5317 6372 2.740714 GCATGTCGGTCTGGCGTTC 61.741 63.158 0.00 0.00 0.00 3.95
5318 6373 2.742372 GCATGTCGGTCTGGCGTT 60.742 61.111 0.00 0.00 0.00 4.84
5319 6374 1.955495 TATGCATGTCGGTCTGGCGT 61.955 55.000 10.16 0.00 0.00 5.68
5320 6375 0.601046 ATATGCATGTCGGTCTGGCG 60.601 55.000 10.16 0.00 0.00 5.69
5321 6376 1.151668 GATATGCATGTCGGTCTGGC 58.848 55.000 10.16 0.00 0.00 4.85
5322 6377 1.070601 TGGATATGCATGTCGGTCTGG 59.929 52.381 16.17 0.00 0.00 3.86
5323 6378 2.531522 TGGATATGCATGTCGGTCTG 57.468 50.000 16.17 0.00 0.00 3.51
5324 6379 2.170397 TGTTGGATATGCATGTCGGTCT 59.830 45.455 16.17 0.00 0.00 3.85
5325 6380 2.560504 TGTTGGATATGCATGTCGGTC 58.439 47.619 16.17 9.55 0.00 4.79
5326 6381 2.708216 TGTTGGATATGCATGTCGGT 57.292 45.000 16.17 0.00 0.00 4.69
5327 6382 4.333649 GGATATGTTGGATATGCATGTCGG 59.666 45.833 16.17 0.00 33.47 4.79
5328 6383 5.181009 AGGATATGTTGGATATGCATGTCG 58.819 41.667 16.17 0.00 33.47 4.35
5329 6384 6.765036 CCTAGGATATGTTGGATATGCATGTC 59.235 42.308 14.60 14.60 32.41 3.06
5330 6385 6.216251 ACCTAGGATATGTTGGATATGCATGT 59.784 38.462 17.98 1.23 0.00 3.21
5331 6386 6.656902 ACCTAGGATATGTTGGATATGCATG 58.343 40.000 17.98 0.00 0.00 4.06
5332 6387 6.898171 ACCTAGGATATGTTGGATATGCAT 57.102 37.500 17.98 3.79 0.00 3.96
5333 6388 7.189087 TCTACCTAGGATATGTTGGATATGCA 58.811 38.462 17.98 0.00 0.00 3.96
5334 6389 7.661536 TCTACCTAGGATATGTTGGATATGC 57.338 40.000 17.98 0.00 0.00 3.14
5335 6390 9.035890 TGTTCTACCTAGGATATGTTGGATATG 57.964 37.037 17.98 0.00 0.00 1.78
5350 6405 3.510360 CCCCGATGGTATGTTCTACCTAG 59.490 52.174 3.31 0.00 38.39 3.02
5353 6408 2.322658 TCCCCGATGGTATGTTCTACC 58.677 52.381 0.00 0.00 38.07 3.18
5354 6409 5.934402 ATATCCCCGATGGTATGTTCTAC 57.066 43.478 0.00 0.00 34.77 2.59
5355 6410 6.020389 TCAATATCCCCGATGGTATGTTCTA 58.980 40.000 0.00 0.00 34.77 2.10
5356 6411 4.844085 TCAATATCCCCGATGGTATGTTCT 59.156 41.667 0.00 0.00 34.77 3.01
5357 6412 5.160607 TCAATATCCCCGATGGTATGTTC 57.839 43.478 0.00 0.00 34.77 3.18
5359 6414 5.032846 AGATCAATATCCCCGATGGTATGT 58.967 41.667 0.00 0.00 34.77 2.29
5360 6415 5.620738 AGATCAATATCCCCGATGGTATG 57.379 43.478 0.00 0.00 34.77 2.39
5361 6416 7.937700 ATAAGATCAATATCCCCGATGGTAT 57.062 36.000 0.00 0.00 34.77 2.73
5363 6418 7.937700 ATATAAGATCAATATCCCCGATGGT 57.062 36.000 0.00 0.00 34.77 3.55
5364 6419 8.213679 ACAATATAAGATCAATATCCCCGATGG 58.786 37.037 0.00 0.00 31.98 3.51
5365 6420 9.618890 AACAATATAAGATCAATATCCCCGATG 57.381 33.333 0.00 0.00 31.98 3.84
5367 6422 8.602424 ACAACAATATAAGATCAATATCCCCGA 58.398 33.333 0.00 0.00 31.98 5.14
5369 6424 9.739276 TGACAACAATATAAGATCAATATCCCC 57.261 33.333 0.00 0.00 31.98 4.81
5414 6469 0.828022 TGTCGGTCTGGTGTTCTTGT 59.172 50.000 0.00 0.00 0.00 3.16
5418 6473 0.602638 TGCATGTCGGTCTGGTGTTC 60.603 55.000 0.00 0.00 0.00 3.18
5423 6478 1.070601 TGGATATGCATGTCGGTCTGG 59.929 52.381 16.17 0.00 0.00 3.86
5425 6480 2.170397 TGTTGGATATGCATGTCGGTCT 59.830 45.455 16.17 0.00 0.00 3.85
5427 6482 2.708216 TGTTGGATATGCATGTCGGT 57.292 45.000 16.17 0.00 0.00 4.69
5428 6483 4.333649 GGATATGTTGGATATGCATGTCGG 59.666 45.833 16.17 0.00 33.47 4.79
5429 6484 5.181009 AGGATATGTTGGATATGCATGTCG 58.819 41.667 16.17 0.00 33.47 4.35
5430 6485 6.765036 CCTAGGATATGTTGGATATGCATGTC 59.235 42.308 14.60 14.60 32.41 3.06
5431 6486 6.216251 ACCTAGGATATGTTGGATATGCATGT 59.784 38.462 17.98 1.23 0.00 3.21
5432 6487 6.656902 ACCTAGGATATGTTGGATATGCATG 58.343 40.000 17.98 0.00 0.00 4.06
5433 6488 6.898171 ACCTAGGATATGTTGGATATGCAT 57.102 37.500 17.98 3.79 0.00 3.96
5434 6489 7.124298 GTCTACCTAGGATATGTTGGATATGCA 59.876 40.741 17.98 0.00 0.00 3.96
5435 6490 7.418025 GGTCTACCTAGGATATGTTGGATATGC 60.418 44.444 17.98 0.00 0.00 3.14
5436 6491 7.619698 TGGTCTACCTAGGATATGTTGGATATG 59.380 40.741 17.98 0.00 36.82 1.78
5437 6492 7.719424 TGGTCTACCTAGGATATGTTGGATAT 58.281 38.462 17.98 0.00 36.82 1.63
5438 6493 7.111136 TGGTCTACCTAGGATATGTTGGATA 57.889 40.000 17.98 0.00 36.82 2.59
5439 6494 5.977533 TGGTCTACCTAGGATATGTTGGAT 58.022 41.667 17.98 0.00 36.82 3.41
5440 6495 5.412617 TGGTCTACCTAGGATATGTTGGA 57.587 43.478 17.98 0.00 36.82 3.53
5441 6496 5.105716 CGATGGTCTACCTAGGATATGTTGG 60.106 48.000 17.98 0.00 36.82 3.77
5442 6497 5.105716 CCGATGGTCTACCTAGGATATGTTG 60.106 48.000 17.98 0.00 36.82 3.33
5443 6498 5.017490 CCGATGGTCTACCTAGGATATGTT 58.983 45.833 17.98 0.00 36.82 2.71
5444 6499 4.570079 CCCGATGGTCTACCTAGGATATGT 60.570 50.000 17.98 0.00 36.82 2.29
5445 6500 3.954904 CCCGATGGTCTACCTAGGATATG 59.045 52.174 17.98 2.26 36.82 1.78
5446 6501 3.052793 CCCCGATGGTCTACCTAGGATAT 60.053 52.174 17.98 0.00 36.82 1.63
5447 6502 2.310945 CCCCGATGGTCTACCTAGGATA 59.689 54.545 17.98 3.30 36.82 2.59
5448 6503 1.077334 CCCCGATGGTCTACCTAGGAT 59.923 57.143 17.98 2.10 36.82 3.24
5449 6504 0.481567 CCCCGATGGTCTACCTAGGA 59.518 60.000 17.98 0.00 36.82 2.94
5450 6505 0.481567 TCCCCGATGGTCTACCTAGG 59.518 60.000 7.41 7.41 36.82 3.02
5451 6506 2.606751 ATCCCCGATGGTCTACCTAG 57.393 55.000 0.02 0.00 36.82 3.02
5452 6507 4.044952 TCAATATCCCCGATGGTCTACCTA 59.955 45.833 0.02 0.00 36.82 3.08
5453 6508 3.173965 CAATATCCCCGATGGTCTACCT 58.826 50.000 0.02 0.00 36.82 3.08
5454 6509 3.170717 TCAATATCCCCGATGGTCTACC 58.829 50.000 0.00 0.00 34.77 3.18
5455 6510 4.712337 AGATCAATATCCCCGATGGTCTAC 59.288 45.833 0.00 0.00 34.77 2.59
5456 6511 4.947883 AGATCAATATCCCCGATGGTCTA 58.052 43.478 0.00 0.00 34.77 2.59
5457 6512 3.796111 AGATCAATATCCCCGATGGTCT 58.204 45.455 0.00 0.00 34.77 3.85
5458 6513 4.559862 AAGATCAATATCCCCGATGGTC 57.440 45.455 0.00 0.00 34.77 4.02
5459 6514 7.937700 ATATAAGATCAATATCCCCGATGGT 57.062 36.000 0.00 0.00 34.77 3.55
5460 6515 8.213679 ACAATATAAGATCAATATCCCCGATGG 58.786 37.037 0.00 0.00 31.98 3.51
5461 6516 9.618890 AACAATATAAGATCAATATCCCCGATG 57.381 33.333 0.00 0.00 31.98 3.84
5462 6517 9.618890 CAACAATATAAGATCAATATCCCCGAT 57.381 33.333 0.00 0.00 31.98 4.18
5463 6518 8.602424 ACAACAATATAAGATCAATATCCCCGA 58.398 33.333 0.00 0.00 31.98 5.14
5464 6519 8.792830 ACAACAATATAAGATCAATATCCCCG 57.207 34.615 0.00 0.00 31.98 5.73
5465 6520 9.739276 TGACAACAATATAAGATCAATATCCCC 57.261 33.333 0.00 0.00 31.98 4.81
5492 6547 6.906157 TCTTGCATCCTTCAAGAAAATTCT 57.094 33.333 3.26 0.00 44.70 2.40
5556 6611 8.992349 ACAATATAAGATCAATATCCCCGATGA 58.008 33.333 0.00 0.00 31.98 2.92
5560 6615 8.792830 ACAACAATATAAGATCAATATCCCCG 57.207 34.615 0.00 0.00 31.98 5.73
5561 6616 9.739276 TGACAACAATATAAGATCAATATCCCC 57.261 33.333 0.00 0.00 31.98 4.81
5589 6649 6.767902 ACGATCAGGTCATAATGCTAACATTT 59.232 34.615 0.00 0.00 44.21 2.32
5601 6661 3.576861 AGATGGGAACGATCAGGTCATA 58.423 45.455 0.00 0.00 38.65 2.15
5618 6679 2.078849 TCACACGTGTTGGCTAGATG 57.921 50.000 20.79 4.43 0.00 2.90
5619 6680 2.037251 AGTTCACACGTGTTGGCTAGAT 59.963 45.455 20.79 0.00 0.00 1.98
5620 6681 1.411246 AGTTCACACGTGTTGGCTAGA 59.589 47.619 20.79 9.40 0.00 2.43
5622 6683 1.937223 CAAGTTCACACGTGTTGGCTA 59.063 47.619 20.79 0.00 0.00 3.93
5623 6684 0.732571 CAAGTTCACACGTGTTGGCT 59.267 50.000 20.79 13.73 0.00 4.75
5624 6685 0.730265 TCAAGTTCACACGTGTTGGC 59.270 50.000 20.79 11.55 34.30 4.52
5626 6687 3.362014 CGATCTCAAGTTCACACGTGTTG 60.362 47.826 20.79 14.76 34.30 3.33
5631 6693 4.385748 TGATTTCGATCTCAAGTTCACACG 59.614 41.667 0.00 0.00 0.00 4.49
5661 6723 5.767665 ACACTACACAAGCCAATATGTTTGA 59.232 36.000 0.00 0.00 0.00 2.69
5665 6727 6.490040 AGAAAACACTACACAAGCCAATATGT 59.510 34.615 0.00 0.00 0.00 2.29
5685 6747 8.511321 CAAACTGCAACATACATAGGTAGAAAA 58.489 33.333 0.00 0.00 31.88 2.29
5704 6766 0.310543 TTGCCGATGTCACAAACTGC 59.689 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.