Multiple sequence alignment - TraesCS4D01G166900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G166900 chr4D 100.000 4607 0 0 1 4607 284104209 284099603 0.000000e+00 8508.0
1 TraesCS4D01G166900 chr4D 100.000 310 0 0 4708 5017 284099502 284099193 1.570000e-159 573.0
2 TraesCS4D01G166900 chr4D 93.671 237 14 1 1830 2065 40168468 40168232 2.220000e-93 353.0
3 TraesCS4D01G166900 chr4A 94.776 2584 89 18 2062 4607 352275636 352273061 0.000000e+00 3982.0
4 TraesCS4D01G166900 chr4A 95.876 873 27 6 798 1667 352276867 352276001 0.000000e+00 1404.0
5 TraesCS4D01G166900 chr4A 97.581 372 9 0 1458 1829 352276004 352275633 5.480000e-179 638.0
6 TraesCS4D01G166900 chr4A 90.127 395 33 5 10 402 352279561 352279171 4.480000e-140 508.0
7 TraesCS4D01G166900 chr4A 88.841 233 23 3 393 624 352277699 352277469 2.960000e-72 283.0
8 TraesCS4D01G166900 chr4A 91.667 48 4 0 139 186 352279481 352279434 3.240000e-07 67.6
9 TraesCS4D01G166900 chr4B 97.186 2132 42 7 2486 4607 328111281 328113404 0.000000e+00 3589.0
10 TraesCS4D01G166900 chr4B 94.994 1798 61 13 629 2413 328106411 328108192 0.000000e+00 2795.0
11 TraesCS4D01G166900 chr4B 93.789 483 28 2 139 621 328105530 328106010 0.000000e+00 725.0
12 TraesCS4D01G166900 chr4B 89.069 247 24 3 1828 2072 458456462 458456707 2.270000e-78 303.0
13 TraesCS4D01G166900 chrUn 100.000 561 0 0 4047 4607 435870282 435870842 0.000000e+00 1037.0
14 TraesCS4D01G166900 chr5D 97.106 311 7 1 4709 5017 466115287 466114977 1.600000e-144 523.0
15 TraesCS4D01G166900 chr5D 91.322 242 20 1 1828 2068 7947089 7946848 3.740000e-86 329.0
16 TraesCS4D01G166900 chr5D 89.333 150 13 3 4461 4607 538354288 538354139 8.580000e-43 185.0
17 TraesCS4D01G166900 chr3D 96.785 311 7 2 4709 5017 532050587 532050896 2.680000e-142 516.0
18 TraesCS4D01G166900 chr3D 96.141 311 10 1 4709 5017 16948905 16949215 1.610000e-139 507.0
19 TraesCS4D01G166900 chr3D 96.141 311 10 1 4709 5017 87479694 87480004 1.610000e-139 507.0
20 TraesCS4D01G166900 chr3D 92.478 226 15 2 1828 2052 376174113 376174337 6.270000e-84 322.0
21 TraesCS4D01G166900 chr2D 96.463 311 9 1 4709 5017 121576278 121576588 3.460000e-141 512.0
22 TraesCS4D01G166900 chr2D 96.141 311 10 1 4709 5017 553201413 553201723 1.610000e-139 507.0
23 TraesCS4D01G166900 chr2D 96.141 311 10 1 4709 5017 553211143 553211453 1.610000e-139 507.0
24 TraesCS4D01G166900 chr2D 89.933 149 12 3 4461 4607 172409617 172409470 6.630000e-44 189.0
25 TraesCS4D01G166900 chr1A 96.463 311 8 2 4709 5017 401484776 401485085 1.250000e-140 510.0
26 TraesCS4D01G166900 chr1A 88.742 151 13 4 4461 4607 591613205 591613055 1.110000e-41 182.0
27 TraesCS4D01G166900 chr1D 96.154 312 8 3 4709 5017 394420990 394420680 1.610000e-139 507.0
28 TraesCS4D01G166900 chr1D 89.404 151 12 4 4461 4607 493486065 493485915 2.380000e-43 187.0
29 TraesCS4D01G166900 chr5A 91.250 240 21 0 1828 2067 6147580 6147341 1.350000e-85 327.0
30 TraesCS4D01G166900 chr6A 91.489 235 18 2 1828 2060 491581248 491581482 6.270000e-84 322.0
31 TraesCS4D01G166900 chr2B 91.026 234 20 1 1828 2060 162634196 162634429 1.050000e-81 315.0
32 TraesCS4D01G166900 chr2B 89.958 239 22 2 1828 2065 559951926 559951689 1.750000e-79 307.0
33 TraesCS4D01G166900 chr2B 90.541 148 10 4 4461 4606 225571418 225571563 5.130000e-45 193.0
34 TraesCS4D01G166900 chr7A 84.669 287 40 4 146 430 258367487 258367771 2.960000e-72 283.0
35 TraesCS4D01G166900 chr5B 89.933 149 10 3 4461 4607 327083745 327083600 2.380000e-43 187.0
36 TraesCS4D01G166900 chr7B 86.667 120 14 2 160 279 216117616 216117499 1.130000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G166900 chr4D 284099193 284104209 5016 True 4540.500000 8508 100.000000 1 5017 2 chr4D.!!$R2 5016
1 TraesCS4D01G166900 chr4A 352273061 352279561 6500 True 1147.100000 3982 93.144667 10 4607 6 chr4A.!!$R1 4597
2 TraesCS4D01G166900 chr4B 328105530 328113404 7874 False 2369.666667 3589 95.323000 139 4607 3 chr4B.!!$F2 4468
3 TraesCS4D01G166900 chrUn 435870282 435870842 560 False 1037.000000 1037 100.000000 4047 4607 1 chrUn.!!$F1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.035739 TCCTAACCTTTGGCGACACC 59.964 55.0 0.0 0.0 42.67 4.16 F
1844 4314 0.115745 TCCTACCTCCGTCCTGGTTT 59.884 55.0 0.0 0.0 39.52 3.27 F
2413 4883 0.969894 ATCCTAGCGGTGCCATCTAC 59.030 55.0 0.0 0.0 0.00 2.59 F
2669 8203 3.209410 CCCTATTCCAACACTCTCATGC 58.791 50.0 0.0 0.0 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 4530 0.475044 ACCGGCTCCCAAACAAGTAA 59.525 50.000 0.00 0.0 0.00 2.24 R
3571 9123 4.700213 ACAGTTACCAGCATACCATCAAAC 59.300 41.667 0.00 0.0 0.00 2.93 R
3955 9509 4.646040 TCTCCCCAATGCAATTATTCTGTG 59.354 41.667 0.00 0.0 32.46 3.66 R
4708 10263 2.203549 GAGAAGGGCCTCAAGGGGTG 62.204 65.000 6.46 0.0 35.18 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.971305 AGTATCGATGGGGGACATGTTTA 59.029 43.478 8.54 0.00 40.72 2.01
69 70 6.749139 TCTTCAGTCGGGATAGAATTGTATG 58.251 40.000 0.00 0.00 0.00 2.39
81 82 9.793259 GGATAGAATTGTATGATAACCTCCAAA 57.207 33.333 0.00 0.00 0.00 3.28
86 87 7.881775 ATTGTATGATAACCTCCAAAGGAAC 57.118 36.000 0.00 0.00 46.67 3.62
102 103 1.810755 GGAACTTCCTAACCTTTGGCG 59.189 52.381 0.00 0.00 32.53 5.69
103 104 2.551504 GGAACTTCCTAACCTTTGGCGA 60.552 50.000 0.00 0.00 32.53 5.54
104 105 2.180432 ACTTCCTAACCTTTGGCGAC 57.820 50.000 0.00 0.00 0.00 5.19
105 106 1.418637 ACTTCCTAACCTTTGGCGACA 59.581 47.619 0.00 0.00 39.83 4.35
106 107 1.804748 CTTCCTAACCTTTGGCGACAC 59.195 52.381 0.00 0.00 42.67 3.67
107 108 0.035739 TCCTAACCTTTGGCGACACC 59.964 55.000 0.00 0.00 42.67 4.16
108 109 1.296056 CCTAACCTTTGGCGACACCG 61.296 60.000 0.00 0.00 43.94 4.94
109 110 1.296056 CTAACCTTTGGCGACACCGG 61.296 60.000 0.00 0.00 43.94 5.28
118 119 4.308458 CGACACCGGCACCTTCCA 62.308 66.667 0.00 0.00 0.00 3.53
119 120 2.668550 GACACCGGCACCTTCCAC 60.669 66.667 0.00 0.00 0.00 4.02
120 121 3.469863 GACACCGGCACCTTCCACA 62.470 63.158 0.00 0.00 0.00 4.17
121 122 2.203280 CACCGGCACCTTCCACAA 60.203 61.111 0.00 0.00 0.00 3.33
122 123 2.203294 ACCGGCACCTTCCACAAC 60.203 61.111 0.00 0.00 0.00 3.32
123 124 2.203280 CCGGCACCTTCCACAACA 60.203 61.111 0.00 0.00 0.00 3.33
124 125 1.603455 CCGGCACCTTCCACAACAT 60.603 57.895 0.00 0.00 0.00 2.71
125 126 0.322098 CCGGCACCTTCCACAACATA 60.322 55.000 0.00 0.00 0.00 2.29
126 127 1.529226 CGGCACCTTCCACAACATAA 58.471 50.000 0.00 0.00 0.00 1.90
127 128 1.199097 CGGCACCTTCCACAACATAAC 59.801 52.381 0.00 0.00 0.00 1.89
128 129 1.544246 GGCACCTTCCACAACATAACC 59.456 52.381 0.00 0.00 0.00 2.85
129 130 1.544246 GCACCTTCCACAACATAACCC 59.456 52.381 0.00 0.00 0.00 4.11
130 131 2.870175 CACCTTCCACAACATAACCCA 58.130 47.619 0.00 0.00 0.00 4.51
131 132 3.430453 CACCTTCCACAACATAACCCAT 58.570 45.455 0.00 0.00 0.00 4.00
132 133 3.193267 CACCTTCCACAACATAACCCATG 59.807 47.826 0.00 0.00 40.78 3.66
133 134 3.075283 ACCTTCCACAACATAACCCATGA 59.925 43.478 0.00 0.00 38.10 3.07
134 135 4.264352 ACCTTCCACAACATAACCCATGAT 60.264 41.667 0.00 0.00 38.10 2.45
135 136 4.711355 CCTTCCACAACATAACCCATGATT 59.289 41.667 0.00 0.00 38.10 2.57
136 137 5.187576 CCTTCCACAACATAACCCATGATTT 59.812 40.000 0.00 0.00 38.10 2.17
137 138 6.379703 CCTTCCACAACATAACCCATGATTTA 59.620 38.462 0.00 0.00 38.10 1.40
143 144 8.744652 CACAACATAACCCATGATTTACCTAAA 58.255 33.333 0.00 0.00 38.10 1.85
150 151 5.777732 ACCCATGATTTACCTAAACTTTGCA 59.222 36.000 0.00 0.00 0.00 4.08
223 273 5.843019 ATTCAAAGAACCAACCCTCTCTA 57.157 39.130 0.00 0.00 0.00 2.43
256 306 1.344438 CCCTCCTTTTCTTTGTTGCCC 59.656 52.381 0.00 0.00 0.00 5.36
302 353 7.820872 CCTGACAGAGAAAATGCCATTATTTTT 59.179 33.333 3.32 0.00 39.60 1.94
312 363 3.270027 GCCATTATTTTTGAAGCCCCAC 58.730 45.455 0.00 0.00 0.00 4.61
313 364 3.055167 GCCATTATTTTTGAAGCCCCACT 60.055 43.478 0.00 0.00 0.00 4.00
317 368 2.003937 TTTTTGAAGCCCCACTACCC 57.996 50.000 0.00 0.00 0.00 3.69
344 395 5.598416 TCATCCATGTCTCGAGTACAAAT 57.402 39.130 13.13 8.21 0.00 2.32
345 396 6.709018 TCATCCATGTCTCGAGTACAAATA 57.291 37.500 13.13 5.85 0.00 1.40
351 402 4.597004 TGTCTCGAGTACAAATAGGGACT 58.403 43.478 13.13 0.00 46.37 3.85
391 442 7.067372 TGGCATCATAGGAAGAAATACTTGTTG 59.933 37.037 0.00 0.00 39.13 3.33
548 2077 2.292389 TGTGATCCCATTGCCAATCCTT 60.292 45.455 0.00 0.00 0.00 3.36
603 2132 4.164988 CCTTCCACCACTCCTCTTCATATT 59.835 45.833 0.00 0.00 0.00 1.28
628 2169 0.537143 TGGGTGCGCATCAAGAAAGT 60.537 50.000 24.30 0.00 0.00 2.66
635 2591 5.212194 GTGCGCATCAAGAAAGTTAAAAGA 58.788 37.500 15.91 0.00 0.00 2.52
669 2628 0.395586 TACCAACATCAGGCATGCCC 60.396 55.000 33.14 15.39 35.65 5.36
769 2728 6.651225 GCCTTTTTAGATGAGTAGAGTGTGTT 59.349 38.462 0.00 0.00 0.00 3.32
813 2832 1.133199 TGACAATGACCTTGGCCCTTT 60.133 47.619 0.00 0.00 42.77 3.11
821 2840 0.898326 CCTTGGCCCTTTGGGTACAC 60.898 60.000 0.00 0.00 46.51 2.90
864 2883 2.180159 TAGGCTTCGGCTTCGGCTTT 62.180 55.000 0.00 0.00 39.70 3.51
1430 3449 1.551883 GATTGTTGCTTGGGATTGGCT 59.448 47.619 0.00 0.00 0.00 4.75
1538 3557 1.007842 AGTTTGTCAGGGGTTTTGGGT 59.992 47.619 0.00 0.00 0.00 4.51
1728 3953 6.821160 CAGTTGTGTGAAATTTTAAGGGGTTT 59.179 34.615 0.00 0.00 0.00 3.27
1826 4296 3.614092 TGAAGAATGTCAGAAGGGCATC 58.386 45.455 0.00 0.00 0.00 3.91
1827 4297 2.725221 AGAATGTCAGAAGGGCATCC 57.275 50.000 0.00 0.00 0.00 3.51
1829 4299 3.387962 AGAATGTCAGAAGGGCATCCTA 58.612 45.455 0.00 0.00 44.07 2.94
1830 4300 3.135530 AGAATGTCAGAAGGGCATCCTAC 59.864 47.826 0.00 0.00 44.07 3.18
1831 4301 1.204146 TGTCAGAAGGGCATCCTACC 58.796 55.000 0.00 0.00 44.07 3.18
1832 4302 1.273838 TGTCAGAAGGGCATCCTACCT 60.274 52.381 0.00 0.00 44.07 3.08
1833 4303 1.414550 GTCAGAAGGGCATCCTACCTC 59.585 57.143 0.00 0.00 44.07 3.85
1834 4304 0.761802 CAGAAGGGCATCCTACCTCC 59.238 60.000 0.00 0.00 44.07 4.30
1835 4305 0.760945 AGAAGGGCATCCTACCTCCG 60.761 60.000 0.00 0.00 44.07 4.63
1836 4306 1.003051 AAGGGCATCCTACCTCCGT 59.997 57.895 0.00 0.00 44.07 4.69
1837 4307 1.049289 AAGGGCATCCTACCTCCGTC 61.049 60.000 0.00 0.00 44.07 4.79
1838 4308 2.508751 GGGCATCCTACCTCCGTCC 61.509 68.421 0.00 0.00 0.00 4.79
1839 4309 1.457831 GGCATCCTACCTCCGTCCT 60.458 63.158 0.00 0.00 0.00 3.85
1840 4310 1.742768 GCATCCTACCTCCGTCCTG 59.257 63.158 0.00 0.00 0.00 3.86
1841 4311 1.749334 GCATCCTACCTCCGTCCTGG 61.749 65.000 0.00 0.00 40.09 4.45
1842 4312 0.397254 CATCCTACCTCCGTCCTGGT 60.397 60.000 0.00 0.00 39.52 4.00
1843 4313 0.338814 ATCCTACCTCCGTCCTGGTT 59.661 55.000 0.00 0.00 39.52 3.67
1844 4314 0.115745 TCCTACCTCCGTCCTGGTTT 59.884 55.000 0.00 0.00 39.52 3.27
1845 4315 1.358787 TCCTACCTCCGTCCTGGTTTA 59.641 52.381 0.00 0.00 39.52 2.01
1846 4316 2.023695 TCCTACCTCCGTCCTGGTTTAT 60.024 50.000 0.00 0.00 39.52 1.40
1847 4317 2.770232 CCTACCTCCGTCCTGGTTTATT 59.230 50.000 0.00 0.00 39.52 1.40
1848 4318 3.962718 CCTACCTCCGTCCTGGTTTATTA 59.037 47.826 0.00 0.00 39.52 0.98
1849 4319 4.038883 CCTACCTCCGTCCTGGTTTATTAG 59.961 50.000 0.00 0.00 39.52 1.73
1850 4320 3.447950 ACCTCCGTCCTGGTTTATTAGT 58.552 45.455 0.00 0.00 39.52 2.24
1851 4321 4.613437 ACCTCCGTCCTGGTTTATTAGTA 58.387 43.478 0.00 0.00 39.52 1.82
1852 4322 4.403752 ACCTCCGTCCTGGTTTATTAGTAC 59.596 45.833 0.00 0.00 39.52 2.73
1853 4323 4.202192 CCTCCGTCCTGGTTTATTAGTACC 60.202 50.000 0.00 0.00 39.52 3.34
1854 4324 3.706086 TCCGTCCTGGTTTATTAGTACCC 59.294 47.826 0.00 0.00 39.52 3.69
1855 4325 3.708121 CCGTCCTGGTTTATTAGTACCCT 59.292 47.826 0.00 0.00 33.34 4.34
1856 4326 4.162888 CCGTCCTGGTTTATTAGTACCCTT 59.837 45.833 0.00 0.00 33.34 3.95
1857 4327 5.338626 CCGTCCTGGTTTATTAGTACCCTTT 60.339 44.000 0.00 0.00 33.34 3.11
1858 4328 5.583457 CGTCCTGGTTTATTAGTACCCTTTG 59.417 44.000 0.00 0.00 33.34 2.77
1859 4329 6.479006 GTCCTGGTTTATTAGTACCCTTTGT 58.521 40.000 0.00 0.00 33.34 2.83
1860 4330 7.579339 CGTCCTGGTTTATTAGTACCCTTTGTA 60.579 40.741 0.00 0.00 33.34 2.41
1861 4331 8.270030 GTCCTGGTTTATTAGTACCCTTTGTAT 58.730 37.037 0.00 0.00 33.34 2.29
1862 4332 8.838741 TCCTGGTTTATTAGTACCCTTTGTATT 58.161 33.333 0.00 0.00 33.34 1.89
1863 4333 9.117183 CCTGGTTTATTAGTACCCTTTGTATTC 57.883 37.037 0.00 0.00 33.34 1.75
1864 4334 9.901172 CTGGTTTATTAGTACCCTTTGTATTCT 57.099 33.333 0.00 0.00 33.34 2.40
1865 4335 9.675464 TGGTTTATTAGTACCCTTTGTATTCTG 57.325 33.333 0.00 0.00 33.34 3.02
1866 4336 9.676861 GGTTTATTAGTACCCTTTGTATTCTGT 57.323 33.333 0.00 0.00 0.00 3.41
1868 4338 8.726870 TTATTAGTACCCTTTGTATTCTGTGC 57.273 34.615 0.00 0.00 0.00 4.57
1869 4339 3.951663 AGTACCCTTTGTATTCTGTGCC 58.048 45.455 0.00 0.00 0.00 5.01
1870 4340 2.969821 ACCCTTTGTATTCTGTGCCA 57.030 45.000 0.00 0.00 0.00 4.92
1871 4341 3.237268 ACCCTTTGTATTCTGTGCCAA 57.763 42.857 0.00 0.00 0.00 4.52
1872 4342 3.571590 ACCCTTTGTATTCTGTGCCAAA 58.428 40.909 0.00 0.00 0.00 3.28
1873 4343 4.159557 ACCCTTTGTATTCTGTGCCAAAT 58.840 39.130 0.00 0.00 0.00 2.32
1874 4344 4.592778 ACCCTTTGTATTCTGTGCCAAATT 59.407 37.500 0.00 0.00 0.00 1.82
1875 4345 5.071653 ACCCTTTGTATTCTGTGCCAAATTT 59.928 36.000 0.00 0.00 0.00 1.82
1876 4346 5.997129 CCCTTTGTATTCTGTGCCAAATTTT 59.003 36.000 0.00 0.00 0.00 1.82
1877 4347 6.073112 CCCTTTGTATTCTGTGCCAAATTTTG 60.073 38.462 1.99 1.99 0.00 2.44
1878 4348 6.705381 CCTTTGTATTCTGTGCCAAATTTTGA 59.295 34.615 10.72 0.00 0.00 2.69
1879 4349 7.388500 CCTTTGTATTCTGTGCCAAATTTTGAT 59.612 33.333 10.72 0.00 0.00 2.57
1880 4350 7.887996 TTGTATTCTGTGCCAAATTTTGATC 57.112 32.000 10.72 3.09 0.00 2.92
1881 4351 7.230849 TGTATTCTGTGCCAAATTTTGATCT 57.769 32.000 10.72 0.00 0.00 2.75
1882 4352 7.669427 TGTATTCTGTGCCAAATTTTGATCTT 58.331 30.769 10.72 0.00 0.00 2.40
1883 4353 8.801299 TGTATTCTGTGCCAAATTTTGATCTTA 58.199 29.630 10.72 0.00 0.00 2.10
1884 4354 9.638239 GTATTCTGTGCCAAATTTTGATCTTAA 57.362 29.630 10.72 0.00 0.00 1.85
1886 4356 9.729281 ATTCTGTGCCAAATTTTGATCTTAAAT 57.271 25.926 10.72 0.00 0.00 1.40
1887 4357 9.558396 TTCTGTGCCAAATTTTGATCTTAAATT 57.442 25.926 10.72 11.12 36.91 1.82
1888 4358 9.558396 TCTGTGCCAAATTTTGATCTTAAATTT 57.442 25.926 18.20 18.20 42.72 1.82
1915 4385 9.762933 AACTAACAAAATGTTAATGCTTGTCAT 57.237 25.926 4.68 0.00 41.70 3.06
1975 4445 8.849168 ACGAATCCAATGATATAATTTTGCTGA 58.151 29.630 0.00 0.00 0.00 4.26
1976 4446 9.121517 CGAATCCAATGATATAATTTTGCTGAC 57.878 33.333 0.00 0.00 0.00 3.51
1977 4447 9.970395 GAATCCAATGATATAATTTTGCTGACA 57.030 29.630 0.00 0.00 0.00 3.58
1979 4449 9.923143 ATCCAATGATATAATTTTGCTGACATG 57.077 29.630 0.00 0.00 0.00 3.21
1980 4450 7.868922 TCCAATGATATAATTTTGCTGACATGC 59.131 33.333 0.00 0.00 0.00 4.06
1981 4451 7.654116 CCAATGATATAATTTTGCTGACATGCA 59.346 33.333 0.00 0.00 41.65 3.96
1982 4452 9.203421 CAATGATATAATTTTGCTGACATGCAT 57.797 29.630 0.00 0.00 42.96 3.96
1983 4453 9.772973 AATGATATAATTTTGCTGACATGCATT 57.227 25.926 0.00 0.00 42.96 3.56
1993 4463 8.774890 TTTGCTGACATGCATTAATATTTTGT 57.225 26.923 0.00 0.00 42.96 2.83
1994 4464 9.866798 TTTGCTGACATGCATTAATATTTTGTA 57.133 25.926 0.00 0.00 42.96 2.41
1995 4465 9.866798 TTGCTGACATGCATTAATATTTTGTAA 57.133 25.926 0.00 0.00 42.96 2.41
1996 4466 9.518906 TGCTGACATGCATTAATATTTTGTAAG 57.481 29.630 0.00 0.00 38.12 2.34
1997 4467 9.520204 GCTGACATGCATTAATATTTTGTAAGT 57.480 29.630 0.00 0.00 0.00 2.24
2020 4490 9.914131 AAGTTAAATCTCTAGTCAAAATTTGGC 57.086 29.630 1.48 1.48 34.90 4.52
2021 4491 9.077885 AGTTAAATCTCTAGTCAAAATTTGGCA 57.922 29.630 13.11 0.00 37.85 4.92
2022 4492 9.129209 GTTAAATCTCTAGTCAAAATTTGGCAC 57.871 33.333 13.11 1.41 37.85 5.01
2023 4493 6.899393 AATCTCTAGTCAAAATTTGGCACA 57.101 33.333 13.11 0.00 37.85 4.57
2037 4507 2.964209 TGGCACAAAATACAAAGGGGA 58.036 42.857 0.00 0.00 31.92 4.81
2038 4508 2.630580 TGGCACAAAATACAAAGGGGAC 59.369 45.455 0.00 0.00 31.92 4.46
2039 4509 3.692772 TGGCACAAAATACAAAGGGGACT 60.693 43.478 0.00 0.00 37.83 3.85
2040 4510 5.182267 TGGCACAAAATACAAAGGGGACTT 61.182 41.667 0.00 0.00 46.92 3.01
2041 4511 5.928303 TGGCACAAAATACAAAGGGGACTTA 60.928 40.000 0.00 0.00 44.48 2.24
2042 4512 7.204811 TGGCACAAAATACAAAGGGGACTTAT 61.205 38.462 0.00 0.00 44.48 1.73
2043 4513 7.967969 TGGCACAAAATACAAAGGGGACTTATA 60.968 37.037 0.00 0.00 44.48 0.98
2076 4546 3.945921 GAGGTATTACTTGTTTGGGAGCC 59.054 47.826 0.00 0.00 0.00 4.70
2235 4705 2.578480 GGGAAGAGTGAGGGGAGAAAAT 59.422 50.000 0.00 0.00 0.00 1.82
2413 4883 0.969894 ATCCTAGCGGTGCCATCTAC 59.030 55.000 0.00 0.00 0.00 2.59
2457 4948 5.435820 AATGAAATGTTTGCCGCAAAAAT 57.564 30.435 19.87 17.16 35.03 1.82
2489 8020 9.095700 ACTACTTGGCCTGGAAAATAATTAAAA 57.904 29.630 3.32 0.00 0.00 1.52
2491 8022 7.973402 ACTTGGCCTGGAAAATAATTAAAACT 58.027 30.769 3.32 0.00 0.00 2.66
2609 8141 5.627499 TTCAAAGTGTTAGATGTGCCATC 57.373 39.130 6.98 6.98 0.00 3.51
2610 8142 4.910195 TCAAAGTGTTAGATGTGCCATCT 58.090 39.130 18.00 18.00 0.00 2.90
2669 8203 3.209410 CCCTATTCCAACACTCTCATGC 58.791 50.000 0.00 0.00 0.00 4.06
3166 8701 6.010294 AGAGAAAGAATGTTCAACATGCAG 57.990 37.500 11.35 0.00 37.97 4.41
3346 8898 5.385509 AAACACCTGATTATTTTGGGACG 57.614 39.130 0.00 0.00 0.00 4.79
3370 8922 5.798125 TTCTCGAGAGGCAATTATCTCAT 57.202 39.130 15.94 0.00 41.71 2.90
3411 8963 9.745018 ATTTGCTCTATATGTTGGCTATTGTAT 57.255 29.630 0.00 0.00 0.00 2.29
3571 9123 7.928167 TGCATTCAGTAGAAGGTGTAGATATTG 59.072 37.037 0.00 0.00 37.82 1.90
3777 9329 7.310664 AGTGTTGTTCATATCAATCTGCTTTG 58.689 34.615 0.00 0.00 0.00 2.77
3843 9395 3.378112 GGCAAAGCACTGTAGAATATGCA 59.622 43.478 0.00 0.00 40.63 3.96
3909 9461 3.922240 ACTTTTATTTGCTGCTTGATGCG 59.078 39.130 0.00 0.00 46.63 4.73
3951 9505 8.755696 TTGTTTATATCCTGAAATTTGTGTGC 57.244 30.769 0.00 0.00 0.00 4.57
3955 9509 3.988379 TCCTGAAATTTGTGTGCTGAC 57.012 42.857 0.00 0.00 0.00 3.51
4724 10279 2.452491 ACACCCCTTGAGGCCCTT 60.452 61.111 0.00 0.00 0.00 3.95
4725 10280 2.356667 CACCCCTTGAGGCCCTTC 59.643 66.667 0.00 0.00 0.00 3.46
4726 10281 2.211279 ACCCCTTGAGGCCCTTCT 59.789 61.111 0.00 0.00 0.00 2.85
4727 10282 1.925972 ACCCCTTGAGGCCCTTCTC 60.926 63.158 0.00 0.00 0.00 2.87
4728 10283 1.617839 CCCCTTGAGGCCCTTCTCT 60.618 63.158 0.00 0.00 34.98 3.10
4729 10284 1.631071 CCCCTTGAGGCCCTTCTCTC 61.631 65.000 0.00 0.00 34.98 3.20
4730 10285 1.631071 CCCTTGAGGCCCTTCTCTCC 61.631 65.000 0.00 0.00 34.98 3.71
4731 10286 0.620121 CCTTGAGGCCCTTCTCTCCT 60.620 60.000 0.00 0.00 34.98 3.69
4732 10287 1.284313 CTTGAGGCCCTTCTCTCCTT 58.716 55.000 0.00 0.00 34.98 3.36
4733 10288 1.632920 CTTGAGGCCCTTCTCTCCTTT 59.367 52.381 0.00 0.00 34.98 3.11
4734 10289 1.280457 TGAGGCCCTTCTCTCCTTTC 58.720 55.000 0.00 0.00 34.98 2.62
4735 10290 0.544223 GAGGCCCTTCTCTCCTTTCC 59.456 60.000 0.00 0.00 0.00 3.13
4736 10291 0.916845 AGGCCCTTCTCTCCTTTCCC 60.917 60.000 0.00 0.00 0.00 3.97
4737 10292 1.222113 GCCCTTCTCTCCTTTCCCG 59.778 63.158 0.00 0.00 0.00 5.14
4738 10293 1.554583 GCCCTTCTCTCCTTTCCCGT 61.555 60.000 0.00 0.00 0.00 5.28
4739 10294 1.861982 CCCTTCTCTCCTTTCCCGTA 58.138 55.000 0.00 0.00 0.00 4.02
4740 10295 2.399580 CCCTTCTCTCCTTTCCCGTAT 58.600 52.381 0.00 0.00 0.00 3.06
4741 10296 2.103263 CCCTTCTCTCCTTTCCCGTATG 59.897 54.545 0.00 0.00 0.00 2.39
4742 10297 2.103263 CCTTCTCTCCTTTCCCGTATGG 59.897 54.545 0.00 0.00 0.00 2.74
4743 10298 1.120530 TCTCTCCTTTCCCGTATGGC 58.879 55.000 0.00 0.00 0.00 4.40
4744 10299 0.106894 CTCTCCTTTCCCGTATGGCC 59.893 60.000 0.00 0.00 0.00 5.36
4745 10300 1.148498 CTCCTTTCCCGTATGGCCC 59.852 63.158 0.00 0.00 0.00 5.80
4746 10301 1.616930 TCCTTTCCCGTATGGCCCA 60.617 57.895 0.00 0.00 0.00 5.36
4747 10302 0.991355 TCCTTTCCCGTATGGCCCAT 60.991 55.000 0.00 0.00 0.00 4.00
4748 10303 0.106217 CCTTTCCCGTATGGCCCATT 60.106 55.000 0.00 0.00 0.00 3.16
4749 10304 1.144093 CCTTTCCCGTATGGCCCATTA 59.856 52.381 0.00 0.00 0.00 1.90
4750 10305 2.423660 CCTTTCCCGTATGGCCCATTAA 60.424 50.000 0.00 0.00 0.00 1.40
4751 10306 2.649531 TTCCCGTATGGCCCATTAAG 57.350 50.000 0.00 0.00 0.00 1.85
4752 10307 0.768622 TCCCGTATGGCCCATTAAGG 59.231 55.000 0.00 3.09 37.03 2.69
4763 10318 2.932261 CCCATTAAGGCCCACTACTTC 58.068 52.381 0.00 0.00 35.39 3.01
4764 10319 2.422945 CCCATTAAGGCCCACTACTTCC 60.423 54.545 0.00 0.00 35.39 3.46
4765 10320 2.509964 CCATTAAGGCCCACTACTTCCT 59.490 50.000 0.00 0.00 0.00 3.36
4766 10321 3.433740 CCATTAAGGCCCACTACTTCCTC 60.434 52.174 0.00 0.00 0.00 3.71
4767 10322 2.942604 TAAGGCCCACTACTTCCTCT 57.057 50.000 0.00 0.00 0.00 3.69
4768 10323 1.280457 AAGGCCCACTACTTCCTCTG 58.720 55.000 0.00 0.00 0.00 3.35
4769 10324 0.618968 AGGCCCACTACTTCCTCTGG 60.619 60.000 0.00 0.00 0.00 3.86
4770 10325 1.222113 GCCCACTACTTCCTCTGGC 59.778 63.158 0.00 0.00 0.00 4.85
4771 10326 1.517832 CCCACTACTTCCTCTGGCG 59.482 63.158 0.00 0.00 0.00 5.69
4772 10327 0.970937 CCCACTACTTCCTCTGGCGA 60.971 60.000 0.00 0.00 0.00 5.54
4773 10328 0.895530 CCACTACTTCCTCTGGCGAA 59.104 55.000 0.00 0.00 0.00 4.70
4774 10329 1.482593 CCACTACTTCCTCTGGCGAAT 59.517 52.381 0.00 0.00 0.00 3.34
4775 10330 2.093447 CCACTACTTCCTCTGGCGAATT 60.093 50.000 0.00 0.00 0.00 2.17
4776 10331 3.190874 CACTACTTCCTCTGGCGAATTC 58.809 50.000 0.00 0.00 0.00 2.17
4777 10332 2.168728 ACTACTTCCTCTGGCGAATTCC 59.831 50.000 0.00 0.00 0.00 3.01
4778 10333 0.253327 ACTTCCTCTGGCGAATTCCC 59.747 55.000 0.00 3.03 0.00 3.97
4779 10334 0.811616 CTTCCTCTGGCGAATTCCCG 60.812 60.000 0.00 0.00 0.00 5.14
4780 10335 1.550130 TTCCTCTGGCGAATTCCCGT 61.550 55.000 0.00 0.00 0.00 5.28
4781 10336 0.685131 TCCTCTGGCGAATTCCCGTA 60.685 55.000 0.00 0.00 0.00 4.02
4782 10337 0.177141 CCTCTGGCGAATTCCCGTAA 59.823 55.000 0.00 0.00 0.00 3.18
4783 10338 1.287425 CTCTGGCGAATTCCCGTAAC 58.713 55.000 0.00 0.00 0.00 2.50
4784 10339 0.899720 TCTGGCGAATTCCCGTAACT 59.100 50.000 0.00 0.00 0.00 2.24
4785 10340 1.134907 TCTGGCGAATTCCCGTAACTC 60.135 52.381 0.00 0.00 0.00 3.01
4786 10341 0.899720 TGGCGAATTCCCGTAACTCT 59.100 50.000 0.00 0.00 0.00 3.24
4787 10342 1.134907 TGGCGAATTCCCGTAACTCTC 60.135 52.381 0.00 0.00 0.00 3.20
4788 10343 1.568606 GCGAATTCCCGTAACTCTCC 58.431 55.000 0.00 0.00 0.00 3.71
4789 10344 1.836383 CGAATTCCCGTAACTCTCCG 58.164 55.000 0.00 0.00 0.00 4.63
4790 10345 1.535437 CGAATTCCCGTAACTCTCCGG 60.535 57.143 0.00 0.00 43.82 5.14
4791 10346 1.479730 GAATTCCCGTAACTCTCCGGT 59.520 52.381 0.00 0.00 42.67 5.28
4792 10347 2.442236 ATTCCCGTAACTCTCCGGTA 57.558 50.000 0.00 0.00 42.67 4.02
4793 10348 1.463674 TTCCCGTAACTCTCCGGTAC 58.536 55.000 0.00 0.00 42.67 3.34
4794 10349 0.620556 TCCCGTAACTCTCCGGTACT 59.379 55.000 0.00 0.00 42.67 2.73
4795 10350 1.020437 CCCGTAACTCTCCGGTACTC 58.980 60.000 0.00 0.00 42.67 2.59
4796 10351 1.020437 CCGTAACTCTCCGGTACTCC 58.980 60.000 0.00 0.00 39.38 3.85
4812 10367 6.600246 GGTACTCCGAAAAATACCTGAATC 57.400 41.667 0.00 0.00 35.23 2.52
4813 10368 6.110707 GGTACTCCGAAAAATACCTGAATCA 58.889 40.000 0.00 0.00 35.23 2.57
4814 10369 6.036844 GGTACTCCGAAAAATACCTGAATCAC 59.963 42.308 0.00 0.00 35.23 3.06
4815 10370 5.805728 ACTCCGAAAAATACCTGAATCACT 58.194 37.500 0.00 0.00 0.00 3.41
4816 10371 5.875359 ACTCCGAAAAATACCTGAATCACTC 59.125 40.000 0.00 0.00 0.00 3.51
4817 10372 4.868171 TCCGAAAAATACCTGAATCACTCG 59.132 41.667 0.00 0.00 0.00 4.18
4818 10373 4.034048 CCGAAAAATACCTGAATCACTCGG 59.966 45.833 0.00 0.00 36.52 4.63
4819 10374 4.868171 CGAAAAATACCTGAATCACTCGGA 59.132 41.667 0.00 0.00 31.20 4.55
4820 10375 5.350365 CGAAAAATACCTGAATCACTCGGAA 59.650 40.000 0.00 0.00 31.20 4.30
4821 10376 6.496338 AAAAATACCTGAATCACTCGGAAC 57.504 37.500 0.00 0.00 31.20 3.62
4822 10377 3.821421 ATACCTGAATCACTCGGAACC 57.179 47.619 0.00 0.00 31.20 3.62
4823 10378 1.645710 ACCTGAATCACTCGGAACCT 58.354 50.000 0.00 0.00 31.20 3.50
4824 10379 1.978580 ACCTGAATCACTCGGAACCTT 59.021 47.619 0.00 0.00 31.20 3.50
4825 10380 2.372172 ACCTGAATCACTCGGAACCTTT 59.628 45.455 0.00 0.00 31.20 3.11
4826 10381 3.003480 CCTGAATCACTCGGAACCTTTC 58.997 50.000 0.00 0.00 31.20 2.62
4827 10382 3.003480 CTGAATCACTCGGAACCTTTCC 58.997 50.000 0.00 0.00 46.62 3.13
4835 10390 3.846955 GGAACCTTTCCGATCCGAA 57.153 52.632 0.00 0.00 40.59 4.30
4836 10391 2.327200 GGAACCTTTCCGATCCGAAT 57.673 50.000 0.00 0.00 40.59 3.34
4837 10392 3.464111 GGAACCTTTCCGATCCGAATA 57.536 47.619 0.00 0.00 40.59 1.75
4838 10393 4.004196 GGAACCTTTCCGATCCGAATAT 57.996 45.455 0.00 0.00 40.59 1.28
4839 10394 5.143376 GGAACCTTTCCGATCCGAATATA 57.857 43.478 0.00 0.00 40.59 0.86
4840 10395 5.169295 GGAACCTTTCCGATCCGAATATAG 58.831 45.833 0.00 0.00 40.59 1.31
4841 10396 4.189639 ACCTTTCCGATCCGAATATAGC 57.810 45.455 0.00 0.00 0.00 2.97
4842 10397 3.056035 ACCTTTCCGATCCGAATATAGCC 60.056 47.826 0.00 0.00 0.00 3.93
4843 10398 3.195825 CCTTTCCGATCCGAATATAGCCT 59.804 47.826 0.00 0.00 0.00 4.58
4844 10399 4.322801 CCTTTCCGATCCGAATATAGCCTT 60.323 45.833 0.00 0.00 0.00 4.35
4845 10400 4.451629 TTCCGATCCGAATATAGCCTTC 57.548 45.455 0.00 0.00 0.00 3.46
4846 10401 2.758979 TCCGATCCGAATATAGCCTTCC 59.241 50.000 0.00 0.00 0.00 3.46
4847 10402 2.496070 CCGATCCGAATATAGCCTTCCA 59.504 50.000 0.00 0.00 0.00 3.53
4848 10403 3.056107 CCGATCCGAATATAGCCTTCCAA 60.056 47.826 0.00 0.00 0.00 3.53
4849 10404 4.383118 CCGATCCGAATATAGCCTTCCAAT 60.383 45.833 0.00 0.00 0.00 3.16
4850 10405 5.163447 CCGATCCGAATATAGCCTTCCAATA 60.163 44.000 0.00 0.00 0.00 1.90
4851 10406 6.463049 CCGATCCGAATATAGCCTTCCAATAT 60.463 42.308 0.00 0.00 0.00 1.28
4852 10407 7.255836 CCGATCCGAATATAGCCTTCCAATATA 60.256 40.741 0.00 0.00 0.00 0.86
4853 10408 8.307483 CGATCCGAATATAGCCTTCCAATATAT 58.693 37.037 0.00 0.00 0.00 0.86
4854 10409 9.646427 GATCCGAATATAGCCTTCCAATATATC 57.354 37.037 0.00 0.00 0.00 1.63
4855 10410 7.658261 TCCGAATATAGCCTTCCAATATATCG 58.342 38.462 0.00 0.00 0.00 2.92
4856 10411 7.504574 TCCGAATATAGCCTTCCAATATATCGA 59.495 37.037 0.00 0.00 0.00 3.59
4857 10412 8.307483 CCGAATATAGCCTTCCAATATATCGAT 58.693 37.037 2.16 2.16 0.00 3.59
4858 10413 9.347934 CGAATATAGCCTTCCAATATATCGATC 57.652 37.037 0.00 0.00 0.00 3.69
4864 10419 7.036220 AGCCTTCCAATATATCGATCTTTACG 58.964 38.462 0.00 0.00 0.00 3.18
4865 10420 6.812160 GCCTTCCAATATATCGATCTTTACGT 59.188 38.462 0.00 0.00 0.00 3.57
4866 10421 7.009357 GCCTTCCAATATATCGATCTTTACGTC 59.991 40.741 0.00 0.00 0.00 4.34
4867 10422 8.244802 CCTTCCAATATATCGATCTTTACGTCT 58.755 37.037 0.00 0.00 0.00 4.18
4868 10423 9.279904 CTTCCAATATATCGATCTTTACGTCTC 57.720 37.037 0.00 0.00 0.00 3.36
4869 10424 7.461918 TCCAATATATCGATCTTTACGTCTCG 58.538 38.462 0.00 0.00 0.00 4.04
4870 10425 7.332678 TCCAATATATCGATCTTTACGTCTCGA 59.667 37.037 0.00 0.00 43.43 4.04
4871 10426 7.425882 CCAATATATCGATCTTTACGTCTCGAC 59.574 40.741 0.00 0.00 42.26 4.20
4872 10427 3.605743 ATCGATCTTTACGTCTCGACC 57.394 47.619 0.00 0.00 42.26 4.79
4873 10428 2.349590 TCGATCTTTACGTCTCGACCA 58.650 47.619 0.00 0.00 35.41 4.02
4874 10429 2.941064 TCGATCTTTACGTCTCGACCAT 59.059 45.455 0.00 0.00 35.41 3.55
4875 10430 3.376234 TCGATCTTTACGTCTCGACCATT 59.624 43.478 0.00 0.00 35.41 3.16
4876 10431 4.103357 CGATCTTTACGTCTCGACCATTT 58.897 43.478 0.00 0.00 33.07 2.32
4877 10432 4.204573 CGATCTTTACGTCTCGACCATTTC 59.795 45.833 0.00 0.00 33.07 2.17
4896 10451 3.337398 GAGACTCCTCGTCATGTGC 57.663 57.895 0.00 0.00 45.32 4.57
4897 10452 0.524392 GAGACTCCTCGTCATGTGCG 60.524 60.000 6.19 6.19 45.32 5.34
4898 10453 1.213013 GACTCCTCGTCATGTGCGT 59.787 57.895 10.94 0.00 42.37 5.24
4899 10454 1.073216 GACTCCTCGTCATGTGCGTG 61.073 60.000 10.94 9.01 42.37 5.34
4900 10455 1.212751 CTCCTCGTCATGTGCGTGA 59.787 57.895 13.05 9.79 0.00 4.35
4901 10456 0.179127 CTCCTCGTCATGTGCGTGAT 60.179 55.000 13.05 0.00 0.00 3.06
4902 10457 0.179137 TCCTCGTCATGTGCGTGATC 60.179 55.000 13.05 0.00 0.00 2.92
4903 10458 0.179127 CCTCGTCATGTGCGTGATCT 60.179 55.000 13.05 0.00 0.00 2.75
4904 10459 1.195347 CTCGTCATGTGCGTGATCTC 58.805 55.000 10.94 0.00 0.00 2.75
4905 10460 0.525761 TCGTCATGTGCGTGATCTCA 59.474 50.000 10.94 0.00 0.00 3.27
4906 10461 1.134946 TCGTCATGTGCGTGATCTCAT 59.865 47.619 10.94 0.00 0.00 2.90
4907 10462 1.520174 CGTCATGTGCGTGATCTCATC 59.480 52.381 0.00 0.00 0.00 2.92
4908 10463 1.863454 GTCATGTGCGTGATCTCATCC 59.137 52.381 0.00 0.00 0.00 3.51
4909 10464 0.857287 CATGTGCGTGATCTCATCCG 59.143 55.000 0.00 0.00 0.00 4.18
4910 10465 0.249615 ATGTGCGTGATCTCATCCGG 60.250 55.000 0.00 0.00 0.00 5.14
4911 10466 1.592669 GTGCGTGATCTCATCCGGG 60.593 63.158 0.00 0.00 0.00 5.73
4912 10467 1.756561 TGCGTGATCTCATCCGGGA 60.757 57.895 0.00 0.00 0.00 5.14
4913 10468 1.300233 GCGTGATCTCATCCGGGAC 60.300 63.158 0.00 0.00 0.00 4.46
4914 10469 1.739338 GCGTGATCTCATCCGGGACT 61.739 60.000 0.00 0.00 0.00 3.85
4915 10470 0.312416 CGTGATCTCATCCGGGACTC 59.688 60.000 0.00 0.00 0.00 3.36
4916 10471 0.676736 GTGATCTCATCCGGGACTCC 59.323 60.000 0.00 0.00 0.00 3.85
4917 10472 0.261696 TGATCTCATCCGGGACTCCA 59.738 55.000 0.00 0.00 0.00 3.86
4918 10473 1.342975 TGATCTCATCCGGGACTCCAA 60.343 52.381 0.00 0.00 0.00 3.53
4919 10474 1.762957 GATCTCATCCGGGACTCCAAA 59.237 52.381 0.00 0.00 0.00 3.28
4920 10475 0.902531 TCTCATCCGGGACTCCAAAC 59.097 55.000 0.00 0.00 0.00 2.93
4921 10476 0.613260 CTCATCCGGGACTCCAAACA 59.387 55.000 0.00 0.00 0.00 2.83
4922 10477 1.003118 CTCATCCGGGACTCCAAACAA 59.997 52.381 0.00 0.00 0.00 2.83
4923 10478 1.633432 TCATCCGGGACTCCAAACAAT 59.367 47.619 0.00 0.00 0.00 2.71
4924 10479 2.017049 CATCCGGGACTCCAAACAATC 58.983 52.381 0.00 0.00 0.00 2.67
4925 10480 1.358152 TCCGGGACTCCAAACAATCT 58.642 50.000 0.00 0.00 0.00 2.40
4926 10481 1.702957 TCCGGGACTCCAAACAATCTT 59.297 47.619 0.00 0.00 0.00 2.40
4927 10482 2.084546 CCGGGACTCCAAACAATCTTC 58.915 52.381 0.00 0.00 0.00 2.87
4928 10483 1.732259 CGGGACTCCAAACAATCTTCG 59.268 52.381 0.00 0.00 0.00 3.79
4929 10484 2.084546 GGGACTCCAAACAATCTTCGG 58.915 52.381 0.00 0.00 0.00 4.30
4930 10485 2.552373 GGGACTCCAAACAATCTTCGGT 60.552 50.000 0.00 0.00 0.00 4.69
4931 10486 3.307199 GGGACTCCAAACAATCTTCGGTA 60.307 47.826 0.00 0.00 0.00 4.02
4932 10487 3.683340 GGACTCCAAACAATCTTCGGTAC 59.317 47.826 0.00 0.00 0.00 3.34
4933 10488 4.312443 GACTCCAAACAATCTTCGGTACA 58.688 43.478 0.00 0.00 0.00 2.90
4934 10489 4.906618 ACTCCAAACAATCTTCGGTACAT 58.093 39.130 0.00 0.00 0.00 2.29
4935 10490 4.935808 ACTCCAAACAATCTTCGGTACATC 59.064 41.667 0.00 0.00 0.00 3.06
4936 10491 4.900684 TCCAAACAATCTTCGGTACATCA 58.099 39.130 0.00 0.00 0.00 3.07
4937 10492 5.309638 TCCAAACAATCTTCGGTACATCAA 58.690 37.500 0.00 0.00 0.00 2.57
4938 10493 5.765677 TCCAAACAATCTTCGGTACATCAAA 59.234 36.000 0.00 0.00 0.00 2.69
4939 10494 6.432783 TCCAAACAATCTTCGGTACATCAAAT 59.567 34.615 0.00 0.00 0.00 2.32
4940 10495 6.747280 CCAAACAATCTTCGGTACATCAAATC 59.253 38.462 0.00 0.00 0.00 2.17
4941 10496 7.304735 CAAACAATCTTCGGTACATCAAATCA 58.695 34.615 0.00 0.00 0.00 2.57
4942 10497 6.422776 ACAATCTTCGGTACATCAAATCAC 57.577 37.500 0.00 0.00 0.00 3.06
4943 10498 5.937540 ACAATCTTCGGTACATCAAATCACA 59.062 36.000 0.00 0.00 0.00 3.58
4944 10499 6.599244 ACAATCTTCGGTACATCAAATCACAT 59.401 34.615 0.00 0.00 0.00 3.21
4945 10500 7.768582 ACAATCTTCGGTACATCAAATCACATA 59.231 33.333 0.00 0.00 0.00 2.29
4946 10501 8.611757 CAATCTTCGGTACATCAAATCACATAA 58.388 33.333 0.00 0.00 0.00 1.90
4947 10502 7.534085 TCTTCGGTACATCAAATCACATAAC 57.466 36.000 0.00 0.00 0.00 1.89
4948 10503 7.327975 TCTTCGGTACATCAAATCACATAACT 58.672 34.615 0.00 0.00 0.00 2.24
4949 10504 7.491372 TCTTCGGTACATCAAATCACATAACTC 59.509 37.037 0.00 0.00 0.00 3.01
4950 10505 6.635755 TCGGTACATCAAATCACATAACTCA 58.364 36.000 0.00 0.00 0.00 3.41
4951 10506 7.272244 TCGGTACATCAAATCACATAACTCAT 58.728 34.615 0.00 0.00 0.00 2.90
4952 10507 8.417884 TCGGTACATCAAATCACATAACTCATA 58.582 33.333 0.00 0.00 0.00 2.15
4953 10508 9.040939 CGGTACATCAAATCACATAACTCATAA 57.959 33.333 0.00 0.00 0.00 1.90
4965 10520 9.810545 TCACATAACTCATAATACAAATCGTCA 57.189 29.630 0.00 0.00 0.00 4.35
4968 10523 9.943465 CATAACTCATAATACAAATCGTCATCG 57.057 33.333 0.00 0.00 38.55 3.84
4979 10534 1.253116 TCGTCATCGAACGTTAAGCG 58.747 50.000 0.00 0.24 43.34 4.68
4980 10535 1.400113 TCGTCATCGAACGTTAAGCGT 60.400 47.619 0.00 0.00 44.36 5.07
4981 10536 3.530451 TCGTCATCGAACGTTAAGCGTG 61.530 50.000 0.00 2.85 45.98 5.34
4988 10543 3.484547 CGTTAAGCGTGCGGACCC 61.485 66.667 0.00 0.00 35.54 4.46
4989 10544 2.047560 GTTAAGCGTGCGGACCCT 60.048 61.111 0.00 0.00 0.00 4.34
4990 10545 1.216178 GTTAAGCGTGCGGACCCTA 59.784 57.895 0.00 0.00 0.00 3.53
4991 10546 1.080435 GTTAAGCGTGCGGACCCTAC 61.080 60.000 0.00 0.00 0.00 3.18
4992 10547 2.546645 TTAAGCGTGCGGACCCTACG 62.547 60.000 0.00 10.04 40.52 3.51
5004 10559 2.576298 CCCTACGGGTTCGAGAACT 58.424 57.895 14.62 0.00 40.94 3.01
5005 10560 1.755179 CCCTACGGGTTCGAGAACTA 58.245 55.000 14.62 0.70 40.94 2.24
5006 10561 2.305009 CCCTACGGGTTCGAGAACTAT 58.695 52.381 14.62 4.68 40.94 2.12
5007 10562 2.034305 CCCTACGGGTTCGAGAACTATG 59.966 54.545 14.62 8.07 40.94 2.23
5008 10563 2.686915 CCTACGGGTTCGAGAACTATGT 59.313 50.000 14.62 12.47 40.94 2.29
5009 10564 3.879295 CCTACGGGTTCGAGAACTATGTA 59.121 47.826 14.62 12.83 40.94 2.29
5010 10565 4.024218 CCTACGGGTTCGAGAACTATGTAG 60.024 50.000 21.42 21.42 40.94 2.74
5011 10566 3.614092 ACGGGTTCGAGAACTATGTAGA 58.386 45.455 14.62 0.00 40.94 2.59
5012 10567 3.376546 ACGGGTTCGAGAACTATGTAGAC 59.623 47.826 14.62 0.00 40.94 2.59
5013 10568 3.376234 CGGGTTCGAGAACTATGTAGACA 59.624 47.826 14.62 0.00 40.94 3.41
5014 10569 4.036498 CGGGTTCGAGAACTATGTAGACAT 59.964 45.833 14.62 0.08 40.94 3.06
5015 10570 5.282510 GGGTTCGAGAACTATGTAGACATG 58.717 45.833 14.62 0.00 40.94 3.21
5016 10571 5.067413 GGGTTCGAGAACTATGTAGACATGA 59.933 44.000 14.62 0.00 40.94 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.971305 TCCCCCATCGATACTTGTTATGT 59.029 43.478 0.00 0.00 0.00 2.29
1 2 4.202315 TGTCCCCCATCGATACTTGTTATG 60.202 45.833 0.00 0.00 0.00 1.90
4 5 2.193127 TGTCCCCCATCGATACTTGTT 58.807 47.619 0.00 0.00 0.00 2.83
6 7 2.104792 ACATGTCCCCCATCGATACTTG 59.895 50.000 0.00 3.71 0.00 3.16
7 8 2.408565 ACATGTCCCCCATCGATACTT 58.591 47.619 0.00 0.00 0.00 2.24
8 9 2.103153 ACATGTCCCCCATCGATACT 57.897 50.000 0.00 0.00 0.00 2.12
9 10 2.930826 AACATGTCCCCCATCGATAC 57.069 50.000 0.00 0.00 0.00 2.24
10 11 4.349636 ACATAAACATGTCCCCCATCGATA 59.650 41.667 0.00 0.00 0.00 2.92
11 12 3.138283 ACATAAACATGTCCCCCATCGAT 59.862 43.478 0.00 0.00 0.00 3.59
12 13 2.507886 ACATAAACATGTCCCCCATCGA 59.492 45.455 0.00 0.00 0.00 3.59
13 14 2.618241 CACATAAACATGTCCCCCATCG 59.382 50.000 0.00 0.00 31.37 3.84
14 15 2.958355 CCACATAAACATGTCCCCCATC 59.042 50.000 0.00 0.00 31.37 3.51
30 31 3.005554 CTGAAGATGCTCGAAACCACAT 58.994 45.455 0.00 0.00 0.00 3.21
39 40 0.387202 ATCCCGACTGAAGATGCTCG 59.613 55.000 0.00 0.00 0.00 5.03
69 70 5.180810 AGGAAGTTCCTTTGGAGGTTATC 57.819 43.478 19.27 0.00 46.91 1.75
86 87 1.804748 GTGTCGCCAAAGGTTAGGAAG 59.195 52.381 0.00 0.00 0.00 3.46
89 90 1.296056 CGGTGTCGCCAAAGGTTAGG 61.296 60.000 2.76 0.00 36.97 2.69
90 91 1.296056 CCGGTGTCGCCAAAGGTTAG 61.296 60.000 2.76 0.00 36.97 2.34
91 92 1.301874 CCGGTGTCGCCAAAGGTTA 60.302 57.895 2.76 0.00 36.97 2.85
92 93 2.593436 CCGGTGTCGCCAAAGGTT 60.593 61.111 2.76 0.00 36.97 3.50
95 96 4.025401 GTGCCGGTGTCGCCAAAG 62.025 66.667 1.90 0.00 36.97 2.77
101 102 4.308458 TGGAAGGTGCCGGTGTCG 62.308 66.667 1.90 0.00 0.00 4.35
102 103 2.668550 GTGGAAGGTGCCGGTGTC 60.669 66.667 1.90 0.00 0.00 3.67
103 104 3.050354 TTGTGGAAGGTGCCGGTGT 62.050 57.895 1.90 0.00 0.00 4.16
104 105 2.203280 TTGTGGAAGGTGCCGGTG 60.203 61.111 1.90 0.00 0.00 4.94
105 106 2.203294 GTTGTGGAAGGTGCCGGT 60.203 61.111 1.90 0.00 0.00 5.28
106 107 0.322098 TATGTTGTGGAAGGTGCCGG 60.322 55.000 0.00 0.00 0.00 6.13
107 108 1.199097 GTTATGTTGTGGAAGGTGCCG 59.801 52.381 0.00 0.00 0.00 5.69
108 109 1.544246 GGTTATGTTGTGGAAGGTGCC 59.456 52.381 0.00 0.00 0.00 5.01
109 110 1.544246 GGGTTATGTTGTGGAAGGTGC 59.456 52.381 0.00 0.00 0.00 5.01
110 111 2.870175 TGGGTTATGTTGTGGAAGGTG 58.130 47.619 0.00 0.00 0.00 4.00
111 112 3.075283 TCATGGGTTATGTTGTGGAAGGT 59.925 43.478 0.00 0.00 38.01 3.50
112 113 3.696045 TCATGGGTTATGTTGTGGAAGG 58.304 45.455 0.00 0.00 38.01 3.46
113 114 5.920193 AATCATGGGTTATGTTGTGGAAG 57.080 39.130 0.00 0.00 38.01 3.46
114 115 6.153680 GGTAAATCATGGGTTATGTTGTGGAA 59.846 38.462 0.00 0.00 38.01 3.53
115 116 5.654650 GGTAAATCATGGGTTATGTTGTGGA 59.345 40.000 0.00 0.00 38.01 4.02
116 117 5.656416 AGGTAAATCATGGGTTATGTTGTGG 59.344 40.000 0.00 0.00 38.01 4.17
117 118 6.773976 AGGTAAATCATGGGTTATGTTGTG 57.226 37.500 0.00 0.00 38.01 3.33
118 119 8.745590 GTTTAGGTAAATCATGGGTTATGTTGT 58.254 33.333 0.00 0.00 38.01 3.32
119 120 8.966868 AGTTTAGGTAAATCATGGGTTATGTTG 58.033 33.333 0.00 0.00 38.01 3.33
120 121 9.541884 AAGTTTAGGTAAATCATGGGTTATGTT 57.458 29.630 0.00 0.00 38.01 2.71
121 122 9.541884 AAAGTTTAGGTAAATCATGGGTTATGT 57.458 29.630 0.00 0.00 38.01 2.29
122 123 9.801873 CAAAGTTTAGGTAAATCATGGGTTATG 57.198 33.333 0.00 0.00 38.17 1.90
123 124 8.474831 GCAAAGTTTAGGTAAATCATGGGTTAT 58.525 33.333 0.00 0.00 0.00 1.89
124 125 7.451877 TGCAAAGTTTAGGTAAATCATGGGTTA 59.548 33.333 0.00 0.00 0.00 2.85
125 126 6.268847 TGCAAAGTTTAGGTAAATCATGGGTT 59.731 34.615 0.00 0.00 0.00 4.11
126 127 5.777732 TGCAAAGTTTAGGTAAATCATGGGT 59.222 36.000 0.00 0.00 0.00 4.51
127 128 6.279513 TGCAAAGTTTAGGTAAATCATGGG 57.720 37.500 0.00 0.00 0.00 4.00
128 129 6.332630 CCTGCAAAGTTTAGGTAAATCATGG 58.667 40.000 0.00 0.00 0.00 3.66
129 130 5.807011 GCCTGCAAAGTTTAGGTAAATCATG 59.193 40.000 6.34 0.00 34.06 3.07
130 131 5.480073 TGCCTGCAAAGTTTAGGTAAATCAT 59.520 36.000 6.34 0.00 34.06 2.45
131 132 4.830046 TGCCTGCAAAGTTTAGGTAAATCA 59.170 37.500 6.34 0.00 34.06 2.57
132 133 5.161358 GTGCCTGCAAAGTTTAGGTAAATC 58.839 41.667 6.34 0.00 34.06 2.17
133 134 4.021456 GGTGCCTGCAAAGTTTAGGTAAAT 60.021 41.667 6.34 0.00 34.06 1.40
134 135 3.319689 GGTGCCTGCAAAGTTTAGGTAAA 59.680 43.478 6.34 0.00 34.06 2.01
135 136 2.888414 GGTGCCTGCAAAGTTTAGGTAA 59.112 45.455 6.34 0.00 34.06 2.85
136 137 2.510613 GGTGCCTGCAAAGTTTAGGTA 58.489 47.619 6.34 0.00 34.06 3.08
137 138 1.328279 GGTGCCTGCAAAGTTTAGGT 58.672 50.000 6.34 0.00 34.06 3.08
223 273 3.277416 AAGGAGGGAAGACTAGTTGGT 57.723 47.619 0.00 0.00 0.00 3.67
256 306 6.017605 GTCAGGTCTGCATACAAAATGATAGG 60.018 42.308 4.48 0.00 0.00 2.57
302 353 1.128809 TTTCGGGTAGTGGGGCTTCA 61.129 55.000 0.00 0.00 0.00 3.02
312 363 4.310769 GAGACATGGATGATTTCGGGTAG 58.689 47.826 0.00 0.00 0.00 3.18
313 364 3.243737 CGAGACATGGATGATTTCGGGTA 60.244 47.826 0.00 0.00 0.00 3.69
317 368 3.711086 ACTCGAGACATGGATGATTTCG 58.289 45.455 21.68 0.00 33.43 3.46
344 395 5.070001 CCACAACAATTCTTCAAGTCCCTA 58.930 41.667 0.00 0.00 0.00 3.53
345 396 3.891366 CCACAACAATTCTTCAAGTCCCT 59.109 43.478 0.00 0.00 0.00 4.20
351 402 4.933505 TGATGCCACAACAATTCTTCAA 57.066 36.364 0.00 0.00 0.00 2.69
391 442 2.671396 CGCTGGAACATACAGTTGGTAC 59.329 50.000 0.00 0.00 41.51 3.34
548 2077 9.841295 ACACACTCAAGTAAGGACTTATAAAAA 57.159 29.630 0.00 0.00 44.39 1.94
603 2132 0.322366 TTGATGCGCACCCATCTCAA 60.322 50.000 14.90 15.46 41.65 3.02
662 2618 0.253044 TGAGAAGTACCTGGGCATGC 59.747 55.000 9.90 9.90 0.00 4.06
731 2690 9.739276 TCATCTAAAAAGGCTTCTATTTCTCAA 57.261 29.630 0.00 0.00 0.00 3.02
732 2691 9.388506 CTCATCTAAAAAGGCTTCTATTTCTCA 57.611 33.333 0.00 0.00 0.00 3.27
733 2692 9.389755 ACTCATCTAAAAAGGCTTCTATTTCTC 57.610 33.333 0.00 0.00 0.00 2.87
738 2697 9.207868 ACTCTACTCATCTAAAAAGGCTTCTAT 57.792 33.333 0.00 0.00 0.00 1.98
739 2698 8.470805 CACTCTACTCATCTAAAAAGGCTTCTA 58.529 37.037 0.00 0.00 0.00 2.10
745 2704 9.141400 GTAACACACTCTACTCATCTAAAAAGG 57.859 37.037 0.00 0.00 0.00 3.11
746 2705 9.915629 AGTAACACACTCTACTCATCTAAAAAG 57.084 33.333 0.00 0.00 28.33 2.27
769 2728 4.019858 CTCCTCTCCTGATGACACAAGTA 58.980 47.826 0.00 0.00 0.00 2.24
813 2832 2.845317 ACAGCCCACGTGTACCCA 60.845 61.111 15.65 0.00 0.00 4.51
821 2840 2.244117 ATCACTAGCCACAGCCCACG 62.244 60.000 0.00 0.00 41.25 4.94
864 2883 1.679153 GTCGGAAGAAAACAAAGGCCA 59.321 47.619 5.01 0.00 45.01 5.36
868 2887 1.334689 GCCCGTCGGAAGAAAACAAAG 60.335 52.381 14.39 0.00 45.01 2.77
1430 3449 8.755977 TCAGCATAAGAGAGCAATATCATATCA 58.244 33.333 0.00 0.00 0.00 2.15
1538 3557 6.831868 ACATTCATCCATTCATCATCAACAGA 59.168 34.615 0.00 0.00 0.00 3.41
1728 3953 7.408756 AAATGTAGAAATAAGCCAAGCATGA 57.591 32.000 0.00 0.00 0.00 3.07
1771 3996 1.304464 CCCCAAAACCAGCTCTCCC 60.304 63.158 0.00 0.00 0.00 4.30
1817 4050 1.049289 ACGGAGGTAGGATGCCCTTC 61.049 60.000 0.00 0.00 44.75 3.46
1826 4296 1.856629 TAAACCAGGACGGAGGTAGG 58.143 55.000 0.00 0.00 37.07 3.18
1827 4297 4.648307 ACTAATAAACCAGGACGGAGGTAG 59.352 45.833 0.00 0.00 37.07 3.18
1828 4298 4.613437 ACTAATAAACCAGGACGGAGGTA 58.387 43.478 0.00 0.00 37.07 3.08
1829 4299 3.447950 ACTAATAAACCAGGACGGAGGT 58.552 45.455 0.00 0.00 40.61 3.85
1830 4300 4.202192 GGTACTAATAAACCAGGACGGAGG 60.202 50.000 0.00 0.00 38.63 4.30
1831 4301 4.202192 GGGTACTAATAAACCAGGACGGAG 60.202 50.000 0.00 0.00 37.51 4.63
1832 4302 3.706086 GGGTACTAATAAACCAGGACGGA 59.294 47.826 0.00 0.00 37.51 4.69
1833 4303 3.708121 AGGGTACTAATAAACCAGGACGG 59.292 47.826 0.00 0.00 37.51 4.79
1834 4304 5.349061 AAGGGTACTAATAAACCAGGACG 57.651 43.478 0.00 0.00 37.51 4.79
1835 4305 6.479006 ACAAAGGGTACTAATAAACCAGGAC 58.521 40.000 0.00 0.00 37.51 3.85
1836 4306 6.707273 ACAAAGGGTACTAATAAACCAGGA 57.293 37.500 0.00 0.00 37.51 3.86
1837 4307 9.117183 GAATACAAAGGGTACTAATAAACCAGG 57.883 37.037 0.00 0.00 37.51 4.45
1838 4308 9.901172 AGAATACAAAGGGTACTAATAAACCAG 57.099 33.333 0.00 0.00 37.51 4.00
1839 4309 9.675464 CAGAATACAAAGGGTACTAATAAACCA 57.325 33.333 0.00 0.00 37.51 3.67
1840 4310 9.676861 ACAGAATACAAAGGGTACTAATAAACC 57.323 33.333 0.00 0.00 34.07 3.27
1842 4312 9.169592 GCACAGAATACAAAGGGTACTAATAAA 57.830 33.333 0.00 0.00 34.07 1.40
1843 4313 7.771826 GGCACAGAATACAAAGGGTACTAATAA 59.228 37.037 0.00 0.00 34.07 1.40
1844 4314 7.092802 TGGCACAGAATACAAAGGGTACTAATA 60.093 37.037 0.00 0.00 34.07 0.98
1845 4315 6.120220 GGCACAGAATACAAAGGGTACTAAT 58.880 40.000 0.00 0.00 34.07 1.73
1846 4316 5.013287 TGGCACAGAATACAAAGGGTACTAA 59.987 40.000 0.00 0.00 34.07 2.24
1847 4317 4.532916 TGGCACAGAATACAAAGGGTACTA 59.467 41.667 0.00 0.00 34.07 1.82
1848 4318 3.329520 TGGCACAGAATACAAAGGGTACT 59.670 43.478 0.00 0.00 34.07 2.73
1849 4319 3.681593 TGGCACAGAATACAAAGGGTAC 58.318 45.455 0.00 0.00 34.07 3.34
1850 4320 4.374689 TTGGCACAGAATACAAAGGGTA 57.625 40.909 0.00 0.00 42.39 3.69
1851 4321 2.969821 TGGCACAGAATACAAAGGGT 57.030 45.000 0.00 0.00 0.00 4.34
1852 4322 4.806640 ATTTGGCACAGAATACAAAGGG 57.193 40.909 0.00 0.00 42.39 3.95
1853 4323 6.705381 TCAAAATTTGGCACAGAATACAAAGG 59.295 34.615 5.83 0.00 42.39 3.11
1854 4324 7.712264 TCAAAATTTGGCACAGAATACAAAG 57.288 32.000 5.83 0.00 42.39 2.77
1855 4325 8.149647 AGATCAAAATTTGGCACAGAATACAAA 58.850 29.630 5.83 0.00 42.39 2.83
1856 4326 7.669427 AGATCAAAATTTGGCACAGAATACAA 58.331 30.769 5.83 0.00 42.39 2.41
1857 4327 7.230849 AGATCAAAATTTGGCACAGAATACA 57.769 32.000 5.83 0.00 42.39 2.29
1858 4328 9.638239 TTAAGATCAAAATTTGGCACAGAATAC 57.362 29.630 5.83 0.00 42.39 1.89
1860 4330 9.729281 ATTTAAGATCAAAATTTGGCACAGAAT 57.271 25.926 5.83 0.00 42.39 2.40
1861 4331 9.558396 AATTTAAGATCAAAATTTGGCACAGAA 57.442 25.926 5.83 0.00 42.39 3.02
1862 4332 9.558396 AAATTTAAGATCAAAATTTGGCACAGA 57.442 25.926 21.39 0.00 42.19 3.41
1889 4359 9.762933 ATGACAAGCATTAACATTTTGTTAGTT 57.237 25.926 0.91 0.00 42.93 2.24
1949 4419 8.849168 TCAGCAAAATTATATCATTGGATTCGT 58.151 29.630 0.00 0.00 34.89 3.85
1950 4420 9.121517 GTCAGCAAAATTATATCATTGGATTCG 57.878 33.333 0.00 0.00 34.89 3.34
1951 4421 9.970395 TGTCAGCAAAATTATATCATTGGATTC 57.030 29.630 0.00 0.00 34.89 2.52
1953 4423 9.923143 CATGTCAGCAAAATTATATCATTGGAT 57.077 29.630 0.00 0.00 37.55 3.41
1954 4424 7.868922 GCATGTCAGCAAAATTATATCATTGGA 59.131 33.333 0.00 0.00 0.00 3.53
1955 4425 7.654116 TGCATGTCAGCAAAATTATATCATTGG 59.346 33.333 0.00 0.00 42.46 3.16
1956 4426 8.582433 TGCATGTCAGCAAAATTATATCATTG 57.418 30.769 0.00 0.00 42.46 2.82
1971 4441 9.520204 ACTTACAAAATATTAATGCATGTCAGC 57.480 29.630 0.00 0.00 0.00 4.26
1994 4464 9.914131 GCCAAATTTTGACTAGAGATTTAACTT 57.086 29.630 10.72 0.00 0.00 2.66
1995 4465 9.077885 TGCCAAATTTTGACTAGAGATTTAACT 57.922 29.630 10.72 0.00 0.00 2.24
1996 4466 9.129209 GTGCCAAATTTTGACTAGAGATTTAAC 57.871 33.333 10.72 0.00 0.00 2.01
1997 4467 8.855110 TGTGCCAAATTTTGACTAGAGATTTAA 58.145 29.630 10.72 0.00 0.00 1.52
1998 4468 8.402798 TGTGCCAAATTTTGACTAGAGATTTA 57.597 30.769 10.72 0.00 0.00 1.40
1999 4469 7.288810 TGTGCCAAATTTTGACTAGAGATTT 57.711 32.000 10.72 0.00 0.00 2.17
2000 4470 6.899393 TGTGCCAAATTTTGACTAGAGATT 57.101 33.333 10.72 0.00 0.00 2.40
2001 4471 6.899393 TTGTGCCAAATTTTGACTAGAGAT 57.101 33.333 10.72 0.00 0.00 2.75
2002 4472 6.707440 TTTGTGCCAAATTTTGACTAGAGA 57.293 33.333 10.72 0.00 0.00 3.10
2003 4473 7.951530 ATTTTGTGCCAAATTTTGACTAGAG 57.048 32.000 10.72 0.00 0.00 2.43
2004 4474 8.417106 TGTATTTTGTGCCAAATTTTGACTAGA 58.583 29.630 10.72 0.00 0.00 2.43
2005 4475 8.586570 TGTATTTTGTGCCAAATTTTGACTAG 57.413 30.769 10.72 0.00 0.00 2.57
2006 4476 8.948631 TTGTATTTTGTGCCAAATTTTGACTA 57.051 26.923 10.72 0.00 0.00 2.59
2007 4477 7.856145 TTGTATTTTGTGCCAAATTTTGACT 57.144 28.000 10.72 0.00 0.00 3.41
2008 4478 7.643371 CCTTTGTATTTTGTGCCAAATTTTGAC 59.357 33.333 10.72 0.00 0.00 3.18
2009 4479 7.201767 CCCTTTGTATTTTGTGCCAAATTTTGA 60.202 33.333 10.72 0.00 0.00 2.69
2010 4480 6.916932 CCCTTTGTATTTTGTGCCAAATTTTG 59.083 34.615 1.99 1.99 0.00 2.44
2011 4481 6.040278 CCCCTTTGTATTTTGTGCCAAATTTT 59.960 34.615 1.89 0.00 0.00 1.82
2012 4482 5.534278 CCCCTTTGTATTTTGTGCCAAATTT 59.466 36.000 1.89 0.00 0.00 1.82
2013 4483 5.069318 CCCCTTTGTATTTTGTGCCAAATT 58.931 37.500 1.89 2.10 0.00 1.82
2014 4484 4.349342 TCCCCTTTGTATTTTGTGCCAAAT 59.651 37.500 1.89 0.00 0.00 2.32
2015 4485 3.711704 TCCCCTTTGTATTTTGTGCCAAA 59.288 39.130 0.00 0.00 0.00 3.28
2016 4486 3.070302 GTCCCCTTTGTATTTTGTGCCAA 59.930 43.478 0.00 0.00 0.00 4.52
2017 4487 2.630580 GTCCCCTTTGTATTTTGTGCCA 59.369 45.455 0.00 0.00 0.00 4.92
2018 4488 2.897326 AGTCCCCTTTGTATTTTGTGCC 59.103 45.455 0.00 0.00 0.00 5.01
2019 4489 4.600692 AAGTCCCCTTTGTATTTTGTGC 57.399 40.909 0.00 0.00 0.00 4.57
2020 4490 9.634163 GTTTATAAGTCCCCTTTGTATTTTGTG 57.366 33.333 0.00 0.00 31.89 3.33
2021 4491 8.809066 GGTTTATAAGTCCCCTTTGTATTTTGT 58.191 33.333 0.00 0.00 31.89 2.83
2022 4492 8.808092 TGGTTTATAAGTCCCCTTTGTATTTTG 58.192 33.333 6.39 0.00 31.89 2.44
2023 4493 8.959676 TGGTTTATAAGTCCCCTTTGTATTTT 57.040 30.769 6.39 0.00 31.89 1.82
2024 4494 7.618117 CCTGGTTTATAAGTCCCCTTTGTATTT 59.382 37.037 6.39 0.00 31.89 1.40
2025 4495 7.036425 TCCTGGTTTATAAGTCCCCTTTGTATT 60.036 37.037 0.00 0.00 31.89 1.89
2026 4496 6.449041 TCCTGGTTTATAAGTCCCCTTTGTAT 59.551 38.462 0.00 0.00 31.89 2.29
2027 4497 5.791664 TCCTGGTTTATAAGTCCCCTTTGTA 59.208 40.000 0.00 0.00 31.89 2.41
2028 4498 4.604490 TCCTGGTTTATAAGTCCCCTTTGT 59.396 41.667 0.00 0.00 31.89 2.83
2029 4499 5.187621 TCCTGGTTTATAAGTCCCCTTTG 57.812 43.478 0.00 0.00 31.89 2.77
2030 4500 5.340863 CCATCCTGGTTTATAAGTCCCCTTT 60.341 44.000 0.00 0.00 31.35 3.11
2031 4501 4.168088 CCATCCTGGTTTATAAGTCCCCTT 59.832 45.833 0.00 0.00 31.35 3.95
2032 4502 3.722101 CCATCCTGGTTTATAAGTCCCCT 59.278 47.826 0.00 0.00 31.35 4.79
2033 4503 3.720002 TCCATCCTGGTTTATAAGTCCCC 59.280 47.826 0.00 0.00 39.03 4.81
2034 4504 4.202472 CCTCCATCCTGGTTTATAAGTCCC 60.202 50.000 0.00 0.36 39.03 4.46
2035 4505 4.412528 ACCTCCATCCTGGTTTATAAGTCC 59.587 45.833 0.00 2.91 39.03 3.85
2036 4506 5.632034 ACCTCCATCCTGGTTTATAAGTC 57.368 43.478 0.00 0.00 39.03 3.01
2037 4507 7.707467 AATACCTCCATCCTGGTTTATAAGT 57.293 36.000 0.00 0.00 39.03 2.24
2038 4508 8.881262 AGTAATACCTCCATCCTGGTTTATAAG 58.119 37.037 0.00 0.00 39.03 1.73
2039 4509 8.808240 AGTAATACCTCCATCCTGGTTTATAA 57.192 34.615 0.00 0.00 39.03 0.98
2040 4510 8.656806 CAAGTAATACCTCCATCCTGGTTTATA 58.343 37.037 0.00 0.00 39.03 0.98
2041 4511 7.128883 ACAAGTAATACCTCCATCCTGGTTTAT 59.871 37.037 0.00 0.00 39.03 1.40
2042 4512 6.445786 ACAAGTAATACCTCCATCCTGGTTTA 59.554 38.462 0.00 0.00 39.03 2.01
2043 4513 5.253096 ACAAGTAATACCTCCATCCTGGTTT 59.747 40.000 0.00 0.00 39.03 3.27
2044 4514 4.788617 ACAAGTAATACCTCCATCCTGGTT 59.211 41.667 0.00 0.00 39.03 3.67
2045 4515 4.371681 ACAAGTAATACCTCCATCCTGGT 58.628 43.478 0.00 0.00 39.03 4.00
2046 4516 5.373812 AACAAGTAATACCTCCATCCTGG 57.626 43.478 0.00 0.00 39.43 4.45
2047 4517 5.590259 CCAAACAAGTAATACCTCCATCCTG 59.410 44.000 0.00 0.00 0.00 3.86
2048 4518 5.340027 CCCAAACAAGTAATACCTCCATCCT 60.340 44.000 0.00 0.00 0.00 3.24
2049 4519 4.887655 CCCAAACAAGTAATACCTCCATCC 59.112 45.833 0.00 0.00 0.00 3.51
2050 4520 5.751586 TCCCAAACAAGTAATACCTCCATC 58.248 41.667 0.00 0.00 0.00 3.51
2051 4521 5.755849 CTCCCAAACAAGTAATACCTCCAT 58.244 41.667 0.00 0.00 0.00 3.41
2052 4522 4.566907 GCTCCCAAACAAGTAATACCTCCA 60.567 45.833 0.00 0.00 0.00 3.86
2053 4523 3.945921 GCTCCCAAACAAGTAATACCTCC 59.054 47.826 0.00 0.00 0.00 4.30
2054 4524 3.945921 GGCTCCCAAACAAGTAATACCTC 59.054 47.826 0.00 0.00 0.00 3.85
2055 4525 3.621461 CGGCTCCCAAACAAGTAATACCT 60.621 47.826 0.00 0.00 0.00 3.08
2056 4526 2.681344 CGGCTCCCAAACAAGTAATACC 59.319 50.000 0.00 0.00 0.00 2.73
2057 4527 2.681344 CCGGCTCCCAAACAAGTAATAC 59.319 50.000 0.00 0.00 0.00 1.89
2058 4528 2.306512 ACCGGCTCCCAAACAAGTAATA 59.693 45.455 0.00 0.00 0.00 0.98
2059 4529 1.074889 ACCGGCTCCCAAACAAGTAAT 59.925 47.619 0.00 0.00 0.00 1.89
2060 4530 0.475044 ACCGGCTCCCAAACAAGTAA 59.525 50.000 0.00 0.00 0.00 2.24
2061 4531 0.475044 AACCGGCTCCCAAACAAGTA 59.525 50.000 0.00 0.00 0.00 2.24
2076 4546 3.871006 TGTAGCTTAGATGCATCAAACCG 59.129 43.478 27.81 12.22 34.99 4.44
2235 4705 6.211584 AGCTCATCTTTGTCTAGTTCCACTTA 59.788 38.462 0.00 0.00 0.00 2.24
2457 4948 2.897350 TCCAGGCCAAGTAGTGACTTA 58.103 47.619 5.01 0.00 44.39 2.24
2489 8020 3.118531 AGGCTCCATATTTGACCAGAGT 58.881 45.455 0.00 0.00 0.00 3.24
2491 8022 4.298626 AGTAGGCTCCATATTTGACCAGA 58.701 43.478 0.00 0.00 0.00 3.86
2669 8203 7.010923 GTGTAAATCAGTTGCAGAGATAAGGAG 59.989 40.741 0.00 0.00 31.90 3.69
2769 8304 6.314018 TGCATAAGTAAGCAATTTTCTGACG 58.686 36.000 0.00 0.00 37.90 4.35
3166 8701 8.376270 ACTAGAAAATAGCATACCTGGTAATCC 58.624 37.037 11.17 2.40 38.73 3.01
3346 8898 5.352284 TGAGATAATTGCCTCTCGAGAAAC 58.648 41.667 17.36 11.72 40.65 2.78
3533 9085 8.621532 TTCTACTGAATGCAAGTACAAAAGAT 57.378 30.769 0.00 0.00 0.00 2.40
3571 9123 4.700213 ACAGTTACCAGCATACCATCAAAC 59.300 41.667 0.00 0.00 0.00 2.93
3642 9194 8.500753 AATAGTTTATCGGTTGCACTTATGAA 57.499 30.769 0.00 0.00 0.00 2.57
3777 9329 9.520204 CAATGAACCATTATTAGGATGTCAAAC 57.480 33.333 0.00 0.00 32.35 2.93
3843 9395 4.769688 TCAAATCGAGCCACACATCTATT 58.230 39.130 0.00 0.00 0.00 1.73
3909 9461 5.391312 AAACAAGCCAAAGATACCATCAC 57.609 39.130 0.00 0.00 0.00 3.06
3951 9505 5.345702 CCCAATGCAATTATTCTGTGTCAG 58.654 41.667 0.00 0.00 32.46 3.51
3955 9509 4.646040 TCTCCCCAATGCAATTATTCTGTG 59.354 41.667 0.00 0.00 32.46 3.66
4707 10262 2.452491 AAGGGCCTCAAGGGGTGT 60.452 61.111 6.46 0.00 35.18 4.16
4708 10263 2.203549 GAGAAGGGCCTCAAGGGGTG 62.204 65.000 6.46 0.00 35.18 4.61
4709 10264 1.925972 GAGAAGGGCCTCAAGGGGT 60.926 63.158 6.46 0.00 35.18 4.95
4710 10265 1.617839 AGAGAAGGGCCTCAAGGGG 60.618 63.158 6.46 0.00 35.68 4.79
4711 10266 1.631071 GGAGAGAAGGGCCTCAAGGG 61.631 65.000 6.46 0.00 35.68 3.95
4712 10267 0.620121 AGGAGAGAAGGGCCTCAAGG 60.620 60.000 6.46 0.00 35.68 3.61
4713 10268 1.284313 AAGGAGAGAAGGGCCTCAAG 58.716 55.000 6.46 0.00 35.68 3.02
4714 10269 1.630878 GAAAGGAGAGAAGGGCCTCAA 59.369 52.381 6.46 0.00 35.68 3.02
4715 10270 1.280457 GAAAGGAGAGAAGGGCCTCA 58.720 55.000 6.46 0.00 35.68 3.86
4716 10271 0.544223 GGAAAGGAGAGAAGGGCCTC 59.456 60.000 6.46 0.00 0.00 4.70
4717 10272 0.916845 GGGAAAGGAGAGAAGGGCCT 60.917 60.000 0.00 0.00 0.00 5.19
4718 10273 1.610327 GGGAAAGGAGAGAAGGGCC 59.390 63.158 0.00 0.00 0.00 5.80
4719 10274 1.222113 CGGGAAAGGAGAGAAGGGC 59.778 63.158 0.00 0.00 0.00 5.19
4720 10275 1.861982 TACGGGAAAGGAGAGAAGGG 58.138 55.000 0.00 0.00 0.00 3.95
4721 10276 2.103263 CCATACGGGAAAGGAGAGAAGG 59.897 54.545 0.00 0.00 40.01 3.46
4722 10277 2.483889 GCCATACGGGAAAGGAGAGAAG 60.484 54.545 0.00 0.00 40.01 2.85
4723 10278 1.485066 GCCATACGGGAAAGGAGAGAA 59.515 52.381 0.00 0.00 40.01 2.87
4724 10279 1.120530 GCCATACGGGAAAGGAGAGA 58.879 55.000 0.00 0.00 40.01 3.10
4725 10280 0.106894 GGCCATACGGGAAAGGAGAG 59.893 60.000 0.00 0.00 40.01 3.20
4726 10281 1.342672 GGGCCATACGGGAAAGGAGA 61.343 60.000 4.39 0.00 40.01 3.71
4727 10282 1.148498 GGGCCATACGGGAAAGGAG 59.852 63.158 4.39 0.00 40.01 3.69
4728 10283 0.991355 ATGGGCCATACGGGAAAGGA 60.991 55.000 19.68 0.00 40.01 3.36
4729 10284 0.106217 AATGGGCCATACGGGAAAGG 60.106 55.000 21.54 0.00 40.01 3.11
4730 10285 2.649531 TAATGGGCCATACGGGAAAG 57.350 50.000 21.54 0.00 40.01 2.62
4731 10286 2.423660 CCTTAATGGGCCATACGGGAAA 60.424 50.000 21.54 6.78 40.01 3.13
4732 10287 1.144093 CCTTAATGGGCCATACGGGAA 59.856 52.381 21.54 8.31 40.01 3.97
4733 10288 0.768622 CCTTAATGGGCCATACGGGA 59.231 55.000 21.54 3.35 40.01 5.14
4734 10289 0.893727 GCCTTAATGGGCCATACGGG 60.894 60.000 21.54 20.81 45.92 5.28
4735 10290 2.641197 GCCTTAATGGGCCATACGG 58.359 57.895 21.54 19.97 45.92 4.02
4743 10298 2.422945 GGAAGTAGTGGGCCTTAATGGG 60.423 54.545 4.53 0.00 36.00 4.00
4744 10299 2.509964 AGGAAGTAGTGGGCCTTAATGG 59.490 50.000 4.53 0.00 39.35 3.16
4745 10300 3.456277 AGAGGAAGTAGTGGGCCTTAATG 59.544 47.826 4.53 0.00 0.00 1.90
4746 10301 3.456277 CAGAGGAAGTAGTGGGCCTTAAT 59.544 47.826 4.53 0.00 0.00 1.40
4747 10302 2.838202 CAGAGGAAGTAGTGGGCCTTAA 59.162 50.000 4.53 0.00 0.00 1.85
4748 10303 2.467880 CAGAGGAAGTAGTGGGCCTTA 58.532 52.381 4.53 0.00 0.00 2.69
4749 10304 1.280457 CAGAGGAAGTAGTGGGCCTT 58.720 55.000 4.53 0.00 0.00 4.35
4750 10305 0.618968 CCAGAGGAAGTAGTGGGCCT 60.619 60.000 4.53 0.00 0.00 5.19
4751 10306 1.908483 CCAGAGGAAGTAGTGGGCC 59.092 63.158 0.00 0.00 0.00 5.80
4752 10307 1.222113 GCCAGAGGAAGTAGTGGGC 59.778 63.158 0.00 0.00 0.00 5.36
4753 10308 0.970937 TCGCCAGAGGAAGTAGTGGG 60.971 60.000 0.00 0.00 0.00 4.61
4754 10309 0.895530 TTCGCCAGAGGAAGTAGTGG 59.104 55.000 0.00 0.00 0.00 4.00
4755 10310 2.969628 ATTCGCCAGAGGAAGTAGTG 57.030 50.000 0.00 0.00 0.00 2.74
4756 10311 2.168728 GGAATTCGCCAGAGGAAGTAGT 59.831 50.000 0.00 0.00 0.00 2.73
4757 10312 2.483889 GGGAATTCGCCAGAGGAAGTAG 60.484 54.545 11.31 0.00 0.00 2.57
4758 10313 1.485066 GGGAATTCGCCAGAGGAAGTA 59.515 52.381 11.31 0.00 0.00 2.24
4759 10314 0.253327 GGGAATTCGCCAGAGGAAGT 59.747 55.000 11.31 0.00 0.00 3.01
4760 10315 0.811616 CGGGAATTCGCCAGAGGAAG 60.812 60.000 16.10 0.00 0.00 3.46
4761 10316 1.220749 CGGGAATTCGCCAGAGGAA 59.779 57.895 16.10 0.00 0.00 3.36
4762 10317 0.685131 TACGGGAATTCGCCAGAGGA 60.685 55.000 16.10 0.00 0.00 3.71
4763 10318 0.177141 TTACGGGAATTCGCCAGAGG 59.823 55.000 16.10 5.06 0.00 3.69
4764 10319 1.134788 AGTTACGGGAATTCGCCAGAG 60.135 52.381 16.10 5.41 0.00 3.35
4765 10320 0.899720 AGTTACGGGAATTCGCCAGA 59.100 50.000 16.10 0.00 0.00 3.86
4766 10321 1.134788 AGAGTTACGGGAATTCGCCAG 60.135 52.381 16.10 6.42 0.00 4.85
4767 10322 0.899720 AGAGTTACGGGAATTCGCCA 59.100 50.000 16.10 2.45 0.00 5.69
4768 10323 1.568606 GAGAGTTACGGGAATTCGCC 58.431 55.000 16.10 9.48 0.00 5.54
4769 10324 1.568606 GGAGAGTTACGGGAATTCGC 58.431 55.000 12.30 12.30 0.00 4.70
4770 10325 1.535437 CCGGAGAGTTACGGGAATTCG 60.535 57.143 0.00 0.00 46.08 3.34
4771 10326 2.220479 CCGGAGAGTTACGGGAATTC 57.780 55.000 0.00 0.00 46.08 2.17
4789 10344 6.036844 GTGATTCAGGTATTTTTCGGAGTACC 59.963 42.308 0.00 0.00 37.45 3.34
4790 10345 6.817140 AGTGATTCAGGTATTTTTCGGAGTAC 59.183 38.462 0.00 0.00 0.00 2.73
4791 10346 6.942976 AGTGATTCAGGTATTTTTCGGAGTA 58.057 36.000 0.00 0.00 0.00 2.59
4792 10347 5.805728 AGTGATTCAGGTATTTTTCGGAGT 58.194 37.500 0.00 0.00 0.00 3.85
4793 10348 5.005779 CGAGTGATTCAGGTATTTTTCGGAG 59.994 44.000 0.00 0.00 0.00 4.63
4794 10349 4.868171 CGAGTGATTCAGGTATTTTTCGGA 59.132 41.667 0.00 0.00 0.00 4.55
4795 10350 4.034048 CCGAGTGATTCAGGTATTTTTCGG 59.966 45.833 0.00 0.00 38.02 4.30
4796 10351 4.868171 TCCGAGTGATTCAGGTATTTTTCG 59.132 41.667 0.00 0.00 0.00 3.46
4797 10352 6.403309 GGTTCCGAGTGATTCAGGTATTTTTC 60.403 42.308 0.00 0.00 0.00 2.29
4798 10353 5.414765 GGTTCCGAGTGATTCAGGTATTTTT 59.585 40.000 0.00 0.00 0.00 1.94
4799 10354 4.941873 GGTTCCGAGTGATTCAGGTATTTT 59.058 41.667 0.00 0.00 0.00 1.82
4800 10355 4.225267 AGGTTCCGAGTGATTCAGGTATTT 59.775 41.667 0.00 0.00 0.00 1.40
4801 10356 3.775316 AGGTTCCGAGTGATTCAGGTATT 59.225 43.478 0.00 0.00 0.00 1.89
4802 10357 3.375699 AGGTTCCGAGTGATTCAGGTAT 58.624 45.455 0.00 0.00 0.00 2.73
4803 10358 2.816411 AGGTTCCGAGTGATTCAGGTA 58.184 47.619 0.00 0.00 0.00 3.08
4804 10359 1.645710 AGGTTCCGAGTGATTCAGGT 58.354 50.000 0.00 0.00 0.00 4.00
4805 10360 2.770164 AAGGTTCCGAGTGATTCAGG 57.230 50.000 0.00 0.00 0.00 3.86
4806 10361 3.003480 GGAAAGGTTCCGAGTGATTCAG 58.997 50.000 0.00 0.00 40.59 3.02
4807 10362 3.053831 GGAAAGGTTCCGAGTGATTCA 57.946 47.619 0.00 0.00 40.59 2.57
4817 10372 2.327200 ATTCGGATCGGAAAGGTTCC 57.673 50.000 18.30 0.00 46.62 3.62
4818 10373 4.626172 GCTATATTCGGATCGGAAAGGTTC 59.374 45.833 18.30 6.13 0.00 3.62
4819 10374 4.562963 GGCTATATTCGGATCGGAAAGGTT 60.563 45.833 18.30 6.03 0.00 3.50
4820 10375 3.056035 GGCTATATTCGGATCGGAAAGGT 60.056 47.826 18.30 10.42 0.00 3.50
4821 10376 3.195825 AGGCTATATTCGGATCGGAAAGG 59.804 47.826 18.30 10.31 0.00 3.11
4822 10377 4.457834 AGGCTATATTCGGATCGGAAAG 57.542 45.455 18.30 12.73 0.00 2.62
4823 10378 4.322499 GGAAGGCTATATTCGGATCGGAAA 60.322 45.833 18.30 9.33 0.00 3.13
4824 10379 3.194968 GGAAGGCTATATTCGGATCGGAA 59.805 47.826 16.94 16.94 0.00 4.30
4825 10380 2.758979 GGAAGGCTATATTCGGATCGGA 59.241 50.000 0.00 0.00 0.00 4.55
4826 10381 2.496070 TGGAAGGCTATATTCGGATCGG 59.504 50.000 0.00 0.00 0.00 4.18
4827 10382 3.868757 TGGAAGGCTATATTCGGATCG 57.131 47.619 0.00 0.00 0.00 3.69
4828 10383 9.646427 GATATATTGGAAGGCTATATTCGGATC 57.354 37.037 0.00 0.00 0.00 3.36
4829 10384 8.307483 CGATATATTGGAAGGCTATATTCGGAT 58.693 37.037 0.00 0.00 0.00 4.18
4830 10385 7.504574 TCGATATATTGGAAGGCTATATTCGGA 59.495 37.037 0.00 0.00 0.00 4.55
4831 10386 7.658261 TCGATATATTGGAAGGCTATATTCGG 58.342 38.462 0.00 0.48 0.00 4.30
4832 10387 9.347934 GATCGATATATTGGAAGGCTATATTCG 57.652 37.037 0.00 1.24 0.00 3.34
4838 10393 8.188799 CGTAAAGATCGATATATTGGAAGGCTA 58.811 37.037 0.00 0.00 0.00 3.93
4839 10394 7.036220 CGTAAAGATCGATATATTGGAAGGCT 58.964 38.462 0.00 0.00 0.00 4.58
4840 10395 6.812160 ACGTAAAGATCGATATATTGGAAGGC 59.188 38.462 0.00 0.00 0.00 4.35
4841 10396 8.244802 AGACGTAAAGATCGATATATTGGAAGG 58.755 37.037 0.00 0.00 0.00 3.46
4842 10397 9.279904 GAGACGTAAAGATCGATATATTGGAAG 57.720 37.037 0.00 0.00 0.00 3.46
4843 10398 7.961283 CGAGACGTAAAGATCGATATATTGGAA 59.039 37.037 0.00 0.00 35.65 3.53
4844 10399 7.332678 TCGAGACGTAAAGATCGATATATTGGA 59.667 37.037 0.00 0.00 36.96 3.53
4845 10400 7.425882 GTCGAGACGTAAAGATCGATATATTGG 59.574 40.741 0.00 0.00 41.06 3.16
4846 10401 7.425882 GGTCGAGACGTAAAGATCGATATATTG 59.574 40.741 0.00 0.00 41.06 1.90
4847 10402 7.118825 TGGTCGAGACGTAAAGATCGATATATT 59.881 37.037 0.00 0.00 41.06 1.28
4848 10403 6.592994 TGGTCGAGACGTAAAGATCGATATAT 59.407 38.462 0.00 0.00 41.06 0.86
4849 10404 5.928264 TGGTCGAGACGTAAAGATCGATATA 59.072 40.000 0.00 0.00 41.06 0.86
4850 10405 4.753610 TGGTCGAGACGTAAAGATCGATAT 59.246 41.667 0.00 0.00 41.06 1.63
4851 10406 4.122046 TGGTCGAGACGTAAAGATCGATA 58.878 43.478 0.00 3.83 41.06 2.92
4852 10407 2.941064 TGGTCGAGACGTAAAGATCGAT 59.059 45.455 0.00 0.00 41.06 3.59
4853 10408 2.349590 TGGTCGAGACGTAAAGATCGA 58.650 47.619 0.00 0.00 38.51 3.59
4854 10409 2.819422 TGGTCGAGACGTAAAGATCG 57.181 50.000 0.00 0.00 35.21 3.69
4855 10410 5.623174 GAAATGGTCGAGACGTAAAGATC 57.377 43.478 0.00 0.00 0.00 2.75
4881 10436 1.080501 CACGCACATGACGAGGAGT 60.081 57.895 17.41 0.00 0.00 3.85
4882 10437 0.179127 ATCACGCACATGACGAGGAG 60.179 55.000 17.41 6.52 0.00 3.69
4883 10438 0.179137 GATCACGCACATGACGAGGA 60.179 55.000 17.41 14.02 0.00 3.71
4884 10439 0.179127 AGATCACGCACATGACGAGG 60.179 55.000 17.41 10.13 0.00 4.63
4885 10440 1.195347 GAGATCACGCACATGACGAG 58.805 55.000 17.41 10.88 0.00 4.18
4886 10441 0.525761 TGAGATCACGCACATGACGA 59.474 50.000 17.41 0.00 0.00 4.20
4887 10442 1.520174 GATGAGATCACGCACATGACG 59.480 52.381 0.00 5.44 0.00 4.35
4888 10443 1.863454 GGATGAGATCACGCACATGAC 59.137 52.381 0.00 0.00 0.00 3.06
4889 10444 1.536709 CGGATGAGATCACGCACATGA 60.537 52.381 0.00 0.00 0.00 3.07
4890 10445 0.857287 CGGATGAGATCACGCACATG 59.143 55.000 0.00 0.00 0.00 3.21
4891 10446 0.249615 CCGGATGAGATCACGCACAT 60.250 55.000 0.00 0.00 0.00 3.21
4892 10447 1.141665 CCGGATGAGATCACGCACA 59.858 57.895 0.00 0.00 0.00 4.57
4893 10448 1.592669 CCCGGATGAGATCACGCAC 60.593 63.158 0.73 0.00 0.00 5.34
4894 10449 1.756561 TCCCGGATGAGATCACGCA 60.757 57.895 0.73 0.00 0.00 5.24
4895 10450 1.300233 GTCCCGGATGAGATCACGC 60.300 63.158 0.73 0.00 0.00 5.34
4896 10451 0.312416 GAGTCCCGGATGAGATCACG 59.688 60.000 0.73 0.00 0.00 4.35
4897 10452 0.676736 GGAGTCCCGGATGAGATCAC 59.323 60.000 0.73 0.00 0.00 3.06
4898 10453 0.261696 TGGAGTCCCGGATGAGATCA 59.738 55.000 0.73 0.00 34.29 2.92
4899 10454 1.414158 TTGGAGTCCCGGATGAGATC 58.586 55.000 0.73 0.00 34.29 2.75
4900 10455 1.486726 GTTTGGAGTCCCGGATGAGAT 59.513 52.381 0.73 0.00 34.29 2.75
4901 10456 0.902531 GTTTGGAGTCCCGGATGAGA 59.097 55.000 0.73 0.00 34.29 3.27
4902 10457 0.613260 TGTTTGGAGTCCCGGATGAG 59.387 55.000 0.73 0.00 34.29 2.90
4903 10458 1.060729 TTGTTTGGAGTCCCGGATGA 58.939 50.000 0.73 0.00 34.29 2.92
4904 10459 2.017049 GATTGTTTGGAGTCCCGGATG 58.983 52.381 0.73 0.00 34.29 3.51
4905 10460 1.916181 AGATTGTTTGGAGTCCCGGAT 59.084 47.619 0.73 0.00 34.29 4.18
4906 10461 1.358152 AGATTGTTTGGAGTCCCGGA 58.642 50.000 0.73 0.00 34.29 5.14
4907 10462 2.084546 GAAGATTGTTTGGAGTCCCGG 58.915 52.381 6.74 0.00 34.29 5.73
4908 10463 1.732259 CGAAGATTGTTTGGAGTCCCG 59.268 52.381 6.74 0.00 34.29 5.14
4909 10464 2.084546 CCGAAGATTGTTTGGAGTCCC 58.915 52.381 6.74 0.00 0.00 4.46
4910 10465 2.779506 ACCGAAGATTGTTTGGAGTCC 58.220 47.619 0.73 0.73 0.00 3.85
4911 10466 4.312443 TGTACCGAAGATTGTTTGGAGTC 58.688 43.478 6.82 0.00 0.00 3.36
4912 10467 4.345859 TGTACCGAAGATTGTTTGGAGT 57.654 40.909 6.82 0.00 0.00 3.85
4913 10468 4.935205 TGATGTACCGAAGATTGTTTGGAG 59.065 41.667 6.82 0.00 0.00 3.86
4914 10469 4.900684 TGATGTACCGAAGATTGTTTGGA 58.099 39.130 6.82 0.00 0.00 3.53
4915 10470 5.621197 TTGATGTACCGAAGATTGTTTGG 57.379 39.130 0.00 0.00 0.00 3.28
4916 10471 7.271223 GTGATTTGATGTACCGAAGATTGTTTG 59.729 37.037 0.00 0.00 0.00 2.93
4917 10472 7.040755 TGTGATTTGATGTACCGAAGATTGTTT 60.041 33.333 0.00 0.00 0.00 2.83
4918 10473 6.429692 TGTGATTTGATGTACCGAAGATTGTT 59.570 34.615 0.00 0.00 0.00 2.83
4919 10474 5.937540 TGTGATTTGATGTACCGAAGATTGT 59.062 36.000 0.00 0.00 0.00 2.71
4920 10475 6.421377 TGTGATTTGATGTACCGAAGATTG 57.579 37.500 0.00 0.00 0.00 2.67
4921 10476 8.612619 GTTATGTGATTTGATGTACCGAAGATT 58.387 33.333 0.00 0.00 0.00 2.40
4922 10477 7.987458 AGTTATGTGATTTGATGTACCGAAGAT 59.013 33.333 0.00 0.00 0.00 2.40
4923 10478 7.327975 AGTTATGTGATTTGATGTACCGAAGA 58.672 34.615 0.00 0.00 0.00 2.87
4924 10479 7.277760 TGAGTTATGTGATTTGATGTACCGAAG 59.722 37.037 0.00 0.00 0.00 3.79
4925 10480 7.100409 TGAGTTATGTGATTTGATGTACCGAA 58.900 34.615 0.00 0.00 0.00 4.30
4926 10481 6.635755 TGAGTTATGTGATTTGATGTACCGA 58.364 36.000 0.00 0.00 0.00 4.69
4927 10482 6.902224 TGAGTTATGTGATTTGATGTACCG 57.098 37.500 0.00 0.00 0.00 4.02
4939 10494 9.810545 TGACGATTTGTATTATGAGTTATGTGA 57.189 29.630 0.00 0.00 0.00 3.58
4942 10497 9.943465 CGATGACGATTTGTATTATGAGTTATG 57.057 33.333 0.00 0.00 42.66 1.90
4943 10498 9.908152 TCGATGACGATTTGTATTATGAGTTAT 57.092 29.630 0.00 0.00 43.81 1.89
4960 10515 1.253116 CGCTTAACGTTCGATGACGA 58.747 50.000 16.02 0.00 45.47 4.20
4971 10526 2.546645 TAGGGTCCGCACGCTTAACG 62.547 60.000 0.00 0.00 43.11 3.18
4972 10527 1.080435 GTAGGGTCCGCACGCTTAAC 61.080 60.000 0.00 0.00 43.11 2.01
4973 10528 1.216178 GTAGGGTCCGCACGCTTAA 59.784 57.895 0.00 0.00 43.11 1.85
4974 10529 2.887360 GTAGGGTCCGCACGCTTA 59.113 61.111 0.00 0.00 43.11 3.09
4975 10530 4.430765 CGTAGGGTCCGCACGCTT 62.431 66.667 0.00 0.00 43.11 4.68
4988 10543 4.813161 TCTACATAGTTCTCGAACCCGTAG 59.187 45.833 16.66 16.66 42.06 3.51
4989 10544 4.572389 GTCTACATAGTTCTCGAACCCGTA 59.428 45.833 6.20 5.21 42.06 4.02
4990 10545 3.376546 GTCTACATAGTTCTCGAACCCGT 59.623 47.826 6.20 4.41 42.06 5.28
4991 10546 3.376234 TGTCTACATAGTTCTCGAACCCG 59.624 47.826 6.20 0.00 42.06 5.28
4992 10547 4.978083 TGTCTACATAGTTCTCGAACCC 57.022 45.455 6.20 0.00 42.06 4.11
4993 10548 6.132791 TCATGTCTACATAGTTCTCGAACC 57.867 41.667 6.20 0.00 36.90 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.