Multiple sequence alignment - TraesCS4D01G166700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G166700 chr4D 100.000 7793 0 0 478 8270 282195617 282203409 0.000000e+00 14392.0
1 TraesCS4D01G166700 chr4D 100.000 137 0 0 1 137 282195140 282195276 3.830000e-63 254.0
2 TraesCS4D01G166700 chr4D 90.476 105 9 1 23 126 483945059 483945163 4.030000e-28 137.0
3 TraesCS4D01G166700 chr4A 96.753 5543 141 18 1845 7374 400760205 400754689 0.000000e+00 9202.0
4 TraesCS4D01G166700 chr4A 96.970 990 24 4 816 1805 400761192 400760209 0.000000e+00 1657.0
5 TraesCS4D01G166700 chr4A 87.264 636 57 9 7636 8270 400734696 400734084 0.000000e+00 704.0
6 TraesCS4D01G166700 chr4B 96.781 3541 79 12 4095 7614 346135651 346132125 0.000000e+00 5875.0
7 TraesCS4D01G166700 chr4B 96.725 3328 67 8 778 4099 346139053 346135762 0.000000e+00 5504.0
8 TraesCS4D01G166700 chr4B 93.750 608 36 2 7665 8270 346130736 346130129 0.000000e+00 911.0
9 TraesCS4D01G166700 chr4B 88.321 137 16 0 1 137 346148063 346147927 1.850000e-36 165.0
10 TraesCS4D01G166700 chr1B 81.349 697 77 17 2573 3267 644546269 644545624 1.230000e-142 518.0
11 TraesCS4D01G166700 chr1B 85.600 125 17 1 7 130 322424557 322424681 6.740000e-26 130.0
12 TraesCS4D01G166700 chr1A 83.130 409 32 8 2823 3230 477052109 477051737 1.030000e-88 339.0
13 TraesCS4D01G166700 chr1A 76.877 506 93 21 7723 8213 462418455 462418951 1.770000e-66 265.0
14 TraesCS4D01G166700 chr1A 76.877 506 93 21 7723 8213 462430557 462431053 1.770000e-66 265.0
15 TraesCS4D01G166700 chr1A 76.877 506 93 21 7723 8213 462432778 462433274 1.770000e-66 265.0
16 TraesCS4D01G166700 chr1A 76.482 506 95 21 7723 8213 462413452 462413948 3.830000e-63 254.0
17 TraesCS4D01G166700 chr1A 76.482 506 94 22 7723 8213 462431668 462432163 1.380000e-62 252.0
18 TraesCS4D01G166700 chr2D 84.118 340 48 6 7919 8256 94420097 94420432 2.880000e-84 324.0
19 TraesCS4D01G166700 chr5B 80.488 410 65 13 7788 8185 552844903 552845309 4.850000e-77 300.0
20 TraesCS4D01G166700 chr5B 93.846 65 1 1 1785 1849 583738387 583738326 2.460000e-15 95.3
21 TraesCS4D01G166700 chr7A 89.247 186 20 0 3082 3267 690975962 690975777 4.990000e-57 233.0
22 TraesCS4D01G166700 chr7A 91.304 69 3 3 1784 1852 98789290 98789225 3.180000e-14 91.6
23 TraesCS4D01G166700 chr7B 89.051 137 12 1 1 137 712850980 712850847 5.130000e-37 167.0
24 TraesCS4D01G166700 chr7B 90.164 122 11 1 5 125 417787243 417787122 3.090000e-34 158.0
25 TraesCS4D01G166700 chr7B 92.647 68 4 1 1785 1852 165708227 165708293 6.830000e-16 97.1
26 TraesCS4D01G166700 chr7D 88.618 123 12 2 9 130 149179452 149179331 1.860000e-31 148.0
27 TraesCS4D01G166700 chr5D 89.908 109 10 1 6 114 472747991 472748098 1.120000e-28 139.0
28 TraesCS4D01G166700 chr5D 94.118 68 4 0 1784 1851 412311780 412311713 4.080000e-18 104.0
29 TraesCS4D01G166700 chr5D 91.667 72 3 1 1785 1856 476275254 476275186 6.830000e-16 97.1
30 TraesCS4D01G166700 chr3B 84.672 137 21 0 1 137 626307197 626307061 4.030000e-28 137.0
31 TraesCS4D01G166700 chr2B 89.000 100 11 0 7 106 108248979 108248880 3.130000e-24 124.0
32 TraesCS4D01G166700 chr2B 81.159 138 20 4 534 665 108248797 108248660 1.140000e-18 106.0
33 TraesCS4D01G166700 chr2B 84.783 92 10 4 557 647 204866613 204866701 1.140000e-13 89.8
34 TraesCS4D01G166700 chr6D 95.652 69 3 0 1784 1852 24933497 24933429 2.440000e-20 111.0
35 TraesCS4D01G166700 chr1D 92.537 67 5 0 1784 1850 309094098 309094032 6.830000e-16 97.1
36 TraesCS4D01G166700 chr5A 92.424 66 4 1 1785 1850 381757768 381757704 8.840000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G166700 chr4D 282195140 282203409 8269 False 7323.000000 14392 100.000000 1 8270 2 chr4D.!!$F2 8269
1 TraesCS4D01G166700 chr4A 400754689 400761192 6503 True 5429.500000 9202 96.861500 816 7374 2 chr4A.!!$R2 6558
2 TraesCS4D01G166700 chr4A 400734084 400734696 612 True 704.000000 704 87.264000 7636 8270 1 chr4A.!!$R1 634
3 TraesCS4D01G166700 chr4B 346130129 346139053 8924 True 4096.666667 5875 95.752000 778 8270 3 chr4B.!!$R2 7492
4 TraesCS4D01G166700 chr1B 644545624 644546269 645 True 518.000000 518 81.349000 2573 3267 1 chr1B.!!$R1 694
5 TraesCS4D01G166700 chr1A 462430557 462433274 2717 False 260.666667 265 76.745333 7723 8213 3 chr1A.!!$F3 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 775 0.032952 CGTTGGAGTTGGTCTCGGAA 59.967 55.000 0.00 0.00 43.60 4.30 F
793 794 0.885596 ACGGGAATTTGGCGTCGAAA 60.886 50.000 0.00 0.00 0.00 3.46 F
1948 1951 1.834822 GACGCCATCTCTAGCCCCT 60.835 63.158 0.00 0.00 0.00 4.79 F
3012 3024 2.931325 GCTTCTGACTGCTCTGAATGAG 59.069 50.000 0.00 0.00 45.33 2.90 F
3806 3818 3.025262 CCCTCTGGTTACTCTACTGTCC 58.975 54.545 0.00 0.00 0.00 4.02 F
4642 4769 2.871263 GAGCTCTTCTTTTGTGCTCG 57.129 50.000 6.43 0.00 40.25 5.03 F
6513 6653 0.032952 ACAAAGGCTTGCTGCATGTG 59.967 50.000 15.71 9.19 45.39 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 2214 0.394080 AAGCCTCAGATGCCAGAAGC 60.394 55.000 0.00 0.0 44.14 3.86 R
2781 2793 1.725641 CTGCTGTCTTCCGCACATAA 58.274 50.000 0.00 0.0 31.95 1.90 R
3806 3818 1.591059 CTGAATCTCGGGCTCTGCG 60.591 63.158 0.00 0.0 0.00 5.18 R
4378 4505 1.142667 TCAACATCAACCTCTGTGGCA 59.857 47.619 0.00 0.0 40.22 4.92 R
5536 5676 1.985159 ACACACATACCCAGTGGTCAT 59.015 47.619 8.74 0.0 43.06 3.06 R
6635 6775 0.032615 AGGCCAACAGACCAAAACCA 60.033 50.000 5.01 0.0 0.00 3.67 R
8063 9569 0.036010 CAACAATGCGTCCTCCCTCT 60.036 55.000 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.249189 AGCCGGGGTGAGCTCAAA 61.249 61.111 20.19 0.00 32.71 2.69
18 19 2.044946 GCCGGGGTGAGCTCAAAT 60.045 61.111 20.19 0.00 0.00 2.32
19 20 2.115291 GCCGGGGTGAGCTCAAATC 61.115 63.158 20.19 11.03 0.00 2.17
20 21 1.452108 CCGGGGTGAGCTCAAATCC 60.452 63.158 20.19 19.13 0.00 3.01
21 22 1.815421 CGGGGTGAGCTCAAATCCG 60.815 63.158 27.48 27.48 0.00 4.18
22 23 1.452108 GGGGTGAGCTCAAATCCGG 60.452 63.158 20.19 0.00 0.00 5.14
23 24 2.115291 GGGTGAGCTCAAATCCGGC 61.115 63.158 20.19 3.59 0.00 6.13
24 25 2.115291 GGTGAGCTCAAATCCGGCC 61.115 63.158 20.19 9.89 0.00 6.13
25 26 2.125147 TGAGCTCAAATCCGGCCG 60.125 61.111 21.04 21.04 0.00 6.13
26 27 2.897350 GAGCTCAAATCCGGCCGG 60.897 66.667 39.13 39.13 0.00 6.13
38 39 4.483243 GGCCGGATCCGCTCCAAA 62.483 66.667 29.12 0.00 45.24 3.28
39 40 2.203209 GCCGGATCCGCTCCAAAT 60.203 61.111 29.12 0.00 45.24 2.32
40 41 2.254464 GCCGGATCCGCTCCAAATC 61.254 63.158 29.12 5.52 45.24 2.17
41 42 1.447643 CCGGATCCGCTCCAAATCT 59.552 57.895 29.12 0.00 45.24 2.40
42 43 0.882042 CCGGATCCGCTCCAAATCTG 60.882 60.000 29.12 6.98 45.24 2.90
43 44 0.179073 CGGATCCGCTCCAAATCTGT 60.179 55.000 23.37 0.00 45.24 3.41
44 45 1.587547 GGATCCGCTCCAAATCTGTC 58.412 55.000 0.00 0.00 44.26 3.51
45 46 1.587547 GATCCGCTCCAAATCTGTCC 58.412 55.000 0.00 0.00 0.00 4.02
46 47 0.179073 ATCCGCTCCAAATCTGTCCG 60.179 55.000 0.00 0.00 0.00 4.79
47 48 2.464459 CCGCTCCAAATCTGTCCGC 61.464 63.158 0.00 0.00 0.00 5.54
48 49 2.464459 CGCTCCAAATCTGTCCGCC 61.464 63.158 0.00 0.00 0.00 6.13
49 50 2.464459 GCTCCAAATCTGTCCGCCG 61.464 63.158 0.00 0.00 0.00 6.46
50 51 1.815421 CTCCAAATCTGTCCGCCGG 60.815 63.158 0.00 0.00 0.00 6.13
51 52 2.238847 CTCCAAATCTGTCCGCCGGA 62.239 60.000 5.05 0.00 0.00 5.14
52 53 1.153168 CCAAATCTGTCCGCCGGAT 60.153 57.895 10.04 0.00 41.10 4.18
53 54 1.439353 CCAAATCTGTCCGCCGGATG 61.439 60.000 10.04 5.89 39.21 3.51
54 55 1.819632 AAATCTGTCCGCCGGATGC 60.820 57.895 10.04 0.00 39.21 3.91
63 64 2.329339 GCCGGATGCGCTGAAATC 59.671 61.111 5.05 2.42 0.00 2.17
64 65 2.472059 GCCGGATGCGCTGAAATCA 61.472 57.895 5.05 0.00 0.00 2.57
65 66 1.645455 CCGGATGCGCTGAAATCAG 59.355 57.895 9.73 6.05 46.40 2.90
66 67 1.645455 CGGATGCGCTGAAATCAGG 59.355 57.895 9.73 4.01 43.94 3.86
67 68 1.091771 CGGATGCGCTGAAATCAGGT 61.092 55.000 9.73 0.00 43.94 4.00
68 69 0.379669 GGATGCGCTGAAATCAGGTG 59.620 55.000 9.73 1.76 43.94 4.00
69 70 0.379669 GATGCGCTGAAATCAGGTGG 59.620 55.000 9.73 0.00 43.94 4.61
70 71 1.660560 ATGCGCTGAAATCAGGTGGC 61.661 55.000 9.73 0.00 43.94 5.01
71 72 3.056313 GCGCTGAAATCAGGTGGCC 62.056 63.158 12.09 0.00 43.94 5.36
72 73 2.753966 CGCTGAAATCAGGTGGCCG 61.754 63.158 12.09 3.26 43.94 6.13
73 74 2.409870 GCTGAAATCAGGTGGCCGG 61.410 63.158 12.09 0.00 43.94 6.13
74 75 1.750399 CTGAAATCAGGTGGCCGGG 60.750 63.158 2.18 0.00 40.20 5.73
75 76 2.440247 GAAATCAGGTGGCCGGGG 60.440 66.667 2.18 0.00 0.00 5.73
76 77 3.264845 AAATCAGGTGGCCGGGGT 61.265 61.111 2.18 0.00 0.00 4.95
77 78 2.781431 GAAATCAGGTGGCCGGGGTT 62.781 60.000 2.18 0.00 0.00 4.11
78 79 3.583882 AATCAGGTGGCCGGGGTTG 62.584 63.158 2.18 0.00 0.00 3.77
87 88 4.410400 CCGGGGTTGGACAGCTCC 62.410 72.222 0.00 0.00 37.04 4.70
88 89 4.760047 CGGGGTTGGACAGCTCCG 62.760 72.222 12.94 12.94 39.88 4.63
89 90 4.410400 GGGGTTGGACAGCTCCGG 62.410 72.222 0.00 0.00 39.88 5.14
90 91 4.410400 GGGTTGGACAGCTCCGGG 62.410 72.222 0.00 0.00 39.88 5.73
101 102 3.755628 CTCCGGGCGTCGAGGAAA 61.756 66.667 9.75 0.00 42.43 3.13
102 103 3.984200 CTCCGGGCGTCGAGGAAAC 62.984 68.421 9.75 0.00 42.43 2.78
106 107 4.060038 GGCGTCGAGGAAACGGGA 62.060 66.667 9.75 0.00 40.41 5.14
107 108 2.506438 GCGTCGAGGAAACGGGAG 60.506 66.667 9.75 0.00 40.41 4.30
108 109 2.506438 CGTCGAGGAAACGGGAGC 60.506 66.667 0.00 0.00 36.51 4.70
109 110 2.971452 GTCGAGGAAACGGGAGCT 59.029 61.111 0.00 0.00 0.00 4.09
110 111 1.446272 GTCGAGGAAACGGGAGCTG 60.446 63.158 0.00 0.00 0.00 4.24
111 112 2.815647 CGAGGAAACGGGAGCTGC 60.816 66.667 0.00 0.00 0.00 5.25
112 113 2.815647 GAGGAAACGGGAGCTGCG 60.816 66.667 0.00 0.00 0.00 5.18
113 114 3.296709 GAGGAAACGGGAGCTGCGA 62.297 63.158 0.00 0.00 0.00 5.10
114 115 2.358247 GGAAACGGGAGCTGCGAA 60.358 61.111 0.00 0.00 0.00 4.70
115 116 1.964373 GGAAACGGGAGCTGCGAAA 60.964 57.895 0.00 0.00 0.00 3.46
116 117 1.497722 GAAACGGGAGCTGCGAAAG 59.502 57.895 0.00 0.00 0.00 2.62
117 118 1.912371 GAAACGGGAGCTGCGAAAGG 61.912 60.000 0.00 0.00 0.00 3.11
118 119 3.901797 AACGGGAGCTGCGAAAGGG 62.902 63.158 0.00 0.00 0.00 3.95
120 121 3.717294 GGGAGCTGCGAAAGGGGA 61.717 66.667 0.00 0.00 0.00 4.81
121 122 2.124942 GGAGCTGCGAAAGGGGAG 60.125 66.667 0.00 0.00 0.00 4.30
122 123 2.124942 GAGCTGCGAAAGGGGAGG 60.125 66.667 0.00 0.00 0.00 4.30
123 124 3.689002 GAGCTGCGAAAGGGGAGGG 62.689 68.421 0.00 0.00 0.00 4.30
124 125 4.803908 GCTGCGAAAGGGGAGGGG 62.804 72.222 0.00 0.00 0.00 4.79
125 126 4.803908 CTGCGAAAGGGGAGGGGC 62.804 72.222 0.00 0.00 0.00 5.80
496 497 2.962253 GCTGGATAGCGCACGACC 60.962 66.667 11.47 8.12 40.67 4.79
497 498 2.655364 CTGGATAGCGCACGACCG 60.655 66.667 11.47 0.80 0.00 4.79
498 499 3.120979 CTGGATAGCGCACGACCGA 62.121 63.158 11.47 0.00 0.00 4.69
499 500 2.353607 GGATAGCGCACGACCGAG 60.354 66.667 11.47 0.00 0.00 4.63
500 501 2.713770 GATAGCGCACGACCGAGA 59.286 61.111 11.47 0.00 0.00 4.04
501 502 1.063649 GATAGCGCACGACCGAGAA 59.936 57.895 11.47 0.00 0.00 2.87
502 503 0.524816 GATAGCGCACGACCGAGAAA 60.525 55.000 11.47 0.00 0.00 2.52
503 504 0.108992 ATAGCGCACGACCGAGAAAA 60.109 50.000 11.47 0.00 0.00 2.29
504 505 0.318869 TAGCGCACGACCGAGAAAAA 60.319 50.000 11.47 0.00 0.00 1.94
505 506 0.949105 AGCGCACGACCGAGAAAAAT 60.949 50.000 11.47 0.00 0.00 1.82
506 507 0.789383 GCGCACGACCGAGAAAAATG 60.789 55.000 0.30 0.00 0.00 2.32
507 508 0.787787 CGCACGACCGAGAAAAATGA 59.212 50.000 0.00 0.00 0.00 2.57
508 509 1.461888 CGCACGACCGAGAAAAATGAC 60.462 52.381 0.00 0.00 0.00 3.06
509 510 1.461888 GCACGACCGAGAAAAATGACG 60.462 52.381 0.00 0.00 0.00 4.35
513 514 2.451693 CCGAGAAAAATGACGGCGA 58.548 52.632 16.62 0.00 38.98 5.54
514 515 1.006832 CCGAGAAAAATGACGGCGAT 58.993 50.000 16.62 0.00 38.98 4.58
515 516 1.267532 CCGAGAAAAATGACGGCGATG 60.268 52.381 16.62 0.00 38.98 3.84
516 517 1.267532 CGAGAAAAATGACGGCGATGG 60.268 52.381 16.62 0.00 0.00 3.51
517 518 1.064060 GAGAAAAATGACGGCGATGGG 59.936 52.381 16.62 0.00 0.00 4.00
518 519 0.100503 GAAAAATGACGGCGATGGGG 59.899 55.000 16.62 0.00 0.00 4.96
519 520 1.319614 AAAAATGACGGCGATGGGGG 61.320 55.000 16.62 0.00 0.00 5.40
559 560 4.095400 GCTGGAGAGGGGAGGGGA 62.095 72.222 0.00 0.00 0.00 4.81
560 561 2.787866 CTGGAGAGGGGAGGGGAA 59.212 66.667 0.00 0.00 0.00 3.97
561 562 1.319799 CTGGAGAGGGGAGGGGAAT 59.680 63.158 0.00 0.00 0.00 3.01
562 563 0.568192 CTGGAGAGGGGAGGGGAATA 59.432 60.000 0.00 0.00 0.00 1.75
563 564 0.568192 TGGAGAGGGGAGGGGAATAG 59.432 60.000 0.00 0.00 0.00 1.73
564 565 0.868186 GGAGAGGGGAGGGGAATAGA 59.132 60.000 0.00 0.00 0.00 1.98
565 566 1.223337 GGAGAGGGGAGGGGAATAGAA 59.777 57.143 0.00 0.00 0.00 2.10
566 567 2.361504 GGAGAGGGGAGGGGAATAGAAA 60.362 54.545 0.00 0.00 0.00 2.52
567 568 3.394645 GAGAGGGGAGGGGAATAGAAAA 58.605 50.000 0.00 0.00 0.00 2.29
568 569 3.786450 GAGAGGGGAGGGGAATAGAAAAA 59.214 47.826 0.00 0.00 0.00 1.94
569 570 3.788708 AGAGGGGAGGGGAATAGAAAAAG 59.211 47.826 0.00 0.00 0.00 2.27
570 571 2.859404 AGGGGAGGGGAATAGAAAAAGG 59.141 50.000 0.00 0.00 0.00 3.11
571 572 2.091278 GGGGAGGGGAATAGAAAAAGGG 60.091 54.545 0.00 0.00 0.00 3.95
572 573 2.091278 GGGAGGGGAATAGAAAAAGGGG 60.091 54.545 0.00 0.00 0.00 4.79
573 574 2.667470 GAGGGGAATAGAAAAAGGGGC 58.333 52.381 0.00 0.00 0.00 5.80
574 575 1.063942 AGGGGAATAGAAAAAGGGGCG 60.064 52.381 0.00 0.00 0.00 6.13
575 576 0.744874 GGGAATAGAAAAAGGGGCGC 59.255 55.000 0.00 0.00 0.00 6.53
576 577 1.470051 GGAATAGAAAAAGGGGCGCA 58.530 50.000 10.83 0.00 0.00 6.09
577 578 2.031870 GGAATAGAAAAAGGGGCGCAT 58.968 47.619 10.83 0.00 0.00 4.73
578 579 2.223805 GGAATAGAAAAAGGGGCGCATG 60.224 50.000 10.83 0.00 0.00 4.06
579 580 2.143876 ATAGAAAAAGGGGCGCATGT 57.856 45.000 10.83 0.00 0.00 3.21
580 581 1.173043 TAGAAAAAGGGGCGCATGTG 58.827 50.000 10.83 0.66 0.00 3.21
581 582 0.827507 AGAAAAAGGGGCGCATGTGT 60.828 50.000 10.83 0.00 0.00 3.72
582 583 0.388520 GAAAAAGGGGCGCATGTGTC 60.389 55.000 10.83 4.97 0.00 3.67
583 584 1.815817 AAAAAGGGGCGCATGTGTCC 61.816 55.000 21.94 21.94 0.00 4.02
584 585 2.713531 AAAAGGGGCGCATGTGTCCT 62.714 55.000 27.96 20.62 0.00 3.85
585 586 3.628646 AAGGGGCGCATGTGTCCTC 62.629 63.158 27.96 18.69 0.00 3.71
587 588 4.451150 GGGCGCATGTGTCCTCGA 62.451 66.667 22.70 0.00 0.00 4.04
588 589 3.188786 GGCGCATGTGTCCTCGAC 61.189 66.667 10.83 0.00 0.00 4.20
589 590 3.545481 GCGCATGTGTCCTCGACG 61.545 66.667 0.30 0.00 34.95 5.12
590 591 2.880879 CGCATGTGTCCTCGACGG 60.881 66.667 0.00 0.00 34.95 4.79
591 592 2.509336 GCATGTGTCCTCGACGGG 60.509 66.667 0.00 0.00 34.95 5.28
592 593 2.509336 CATGTGTCCTCGACGGGC 60.509 66.667 0.00 0.00 38.12 6.13
593 594 4.129737 ATGTGTCCTCGACGGGCG 62.130 66.667 0.00 0.00 41.63 6.13
609 610 2.203998 CGGGCCAGGGGAGGATAT 60.204 66.667 4.39 0.00 0.00 1.63
610 611 2.596851 CGGGCCAGGGGAGGATATG 61.597 68.421 4.39 0.00 0.00 1.78
611 612 2.234296 GGGCCAGGGGAGGATATGG 61.234 68.421 4.39 0.00 35.84 2.74
612 613 2.234296 GGCCAGGGGAGGATATGGG 61.234 68.421 0.00 0.00 33.23 4.00
613 614 2.911926 GCCAGGGGAGGATATGGGC 61.912 68.421 0.00 0.00 33.23 5.36
614 615 1.464001 CCAGGGGAGGATATGGGCA 60.464 63.158 0.00 0.00 0.00 5.36
615 616 1.763770 CAGGGGAGGATATGGGCAC 59.236 63.158 0.00 0.00 0.00 5.01
616 617 1.843376 AGGGGAGGATATGGGCACG 60.843 63.158 0.00 0.00 0.00 5.34
617 618 2.032681 GGGAGGATATGGGCACGC 59.967 66.667 0.00 0.00 0.00 5.34
618 619 2.357517 GGAGGATATGGGCACGCG 60.358 66.667 3.53 3.53 0.00 6.01
619 620 3.044305 GAGGATATGGGCACGCGC 61.044 66.667 5.73 0.00 37.44 6.86
620 621 3.521529 GAGGATATGGGCACGCGCT 62.522 63.158 5.73 0.00 38.60 5.92
621 622 2.154798 GAGGATATGGGCACGCGCTA 62.155 60.000 5.73 0.00 38.60 4.26
622 623 1.738099 GGATATGGGCACGCGCTAG 60.738 63.158 5.73 0.00 38.60 3.42
623 624 1.738099 GATATGGGCACGCGCTAGG 60.738 63.158 5.73 0.00 38.60 3.02
624 625 3.883744 ATATGGGCACGCGCTAGGC 62.884 63.158 5.73 9.14 38.60 3.93
645 646 2.963320 GTCCACGCGTGTCCGTTT 60.963 61.111 34.81 0.00 39.83 3.60
646 647 2.962786 TCCACGCGTGTCCGTTTG 60.963 61.111 34.81 19.25 39.83 2.93
647 648 2.962786 CCACGCGTGTCCGTTTGA 60.963 61.111 34.81 0.00 39.83 2.69
648 649 2.314647 CCACGCGTGTCCGTTTGAT 61.315 57.895 34.81 0.00 39.83 2.57
649 650 1.129809 CACGCGTGTCCGTTTGATC 59.870 57.895 30.50 0.00 39.83 2.92
650 651 2.369629 ACGCGTGTCCGTTTGATCG 61.370 57.895 12.93 0.00 38.47 3.69
651 652 2.084101 CGCGTGTCCGTTTGATCGA 61.084 57.895 0.00 0.00 36.15 3.59
652 653 1.610715 CGCGTGTCCGTTTGATCGAA 61.611 55.000 0.00 0.00 36.15 3.71
653 654 0.509499 GCGTGTCCGTTTGATCGAAA 59.491 50.000 0.00 0.00 36.15 3.46
654 655 1.070443 GCGTGTCCGTTTGATCGAAAA 60.070 47.619 0.00 0.00 36.15 2.29
655 656 2.556806 CGTGTCCGTTTGATCGAAAAC 58.443 47.619 0.00 3.14 36.81 2.43
660 661 2.336129 GTTTGATCGAAAACGCGGC 58.664 52.632 12.47 0.00 30.90 6.53
661 662 1.063412 GTTTGATCGAAAACGCGGCC 61.063 55.000 12.47 0.00 30.90 6.13
662 663 2.190101 TTTGATCGAAAACGCGGCCC 62.190 55.000 12.47 0.00 0.00 5.80
663 664 3.122323 GATCGAAAACGCGGCCCA 61.122 61.111 12.47 0.00 0.00 5.36
664 665 2.670251 ATCGAAAACGCGGCCCAA 60.670 55.556 12.47 0.00 0.00 4.12
665 666 2.844224 GATCGAAAACGCGGCCCAAC 62.844 60.000 12.47 0.00 0.00 3.77
666 667 3.656045 CGAAAACGCGGCCCAACT 61.656 61.111 12.47 0.00 0.00 3.16
667 668 2.725641 GAAAACGCGGCCCAACTT 59.274 55.556 12.47 0.00 0.00 2.66
668 669 1.066752 GAAAACGCGGCCCAACTTT 59.933 52.632 12.47 0.00 0.00 2.66
669 670 0.528901 GAAAACGCGGCCCAACTTTT 60.529 50.000 12.47 6.01 0.00 2.27
670 671 0.808060 AAAACGCGGCCCAACTTTTG 60.808 50.000 12.47 0.00 0.00 2.44
683 684 3.793797 AACTTTTGGTTGGGTCGAAAG 57.206 42.857 0.00 0.00 39.98 2.62
684 685 1.407618 ACTTTTGGTTGGGTCGAAAGC 59.592 47.619 0.00 0.00 38.52 3.51
685 686 0.382515 TTTTGGTTGGGTCGAAAGCG 59.617 50.000 0.00 0.00 39.35 4.68
686 687 0.464013 TTTGGTTGGGTCGAAAGCGA 60.464 50.000 0.00 0.00 45.71 4.93
694 695 4.307258 TCGAAAGCGAACGACGTT 57.693 50.000 14.11 14.11 44.78 3.99
695 696 2.127342 TCGAAAGCGAACGACGTTC 58.873 52.632 26.94 26.94 44.78 3.95
705 706 2.851104 CGACGTTCGTTTGCTCCC 59.149 61.111 0.00 0.00 34.72 4.30
706 707 2.851104 GACGTTCGTTTGCTCCCG 59.149 61.111 0.00 0.00 0.00 5.14
707 708 3.291167 GACGTTCGTTTGCTCCCGC 62.291 63.158 0.00 0.00 0.00 6.13
708 709 4.424430 CGTTCGTTTGCTCCCGCG 62.424 66.667 0.00 0.00 39.65 6.46
709 710 4.736631 GTTCGTTTGCTCCCGCGC 62.737 66.667 0.00 0.00 39.65 6.86
712 713 4.101790 CGTTTGCTCCCGCGCATT 62.102 61.111 8.75 0.00 40.04 3.56
713 714 2.504681 GTTTGCTCCCGCGCATTG 60.505 61.111 8.75 0.00 40.04 2.82
714 715 3.746889 TTTGCTCCCGCGCATTGG 61.747 61.111 8.75 4.49 40.04 3.16
715 716 4.713735 TTGCTCCCGCGCATTGGA 62.714 61.111 8.75 9.29 40.04 3.53
716 717 4.713735 TGCTCCCGCGCATTGGAA 62.714 61.111 8.75 0.00 39.65 3.53
717 718 3.880846 GCTCCCGCGCATTGGAAG 61.881 66.667 8.75 0.00 0.00 3.46
718 719 3.204827 CTCCCGCGCATTGGAAGG 61.205 66.667 8.75 0.00 0.00 3.46
721 722 3.520862 CCGCGCATTGGAAGGCAT 61.521 61.111 8.75 0.00 34.99 4.40
722 723 2.278336 CGCGCATTGGAAGGCATG 60.278 61.111 8.75 0.00 34.99 4.06
723 724 2.887360 GCGCATTGGAAGGCATGT 59.113 55.556 0.30 0.00 34.99 3.21
724 725 1.216178 GCGCATTGGAAGGCATGTT 59.784 52.632 0.30 0.00 34.99 2.71
725 726 1.079875 GCGCATTGGAAGGCATGTTG 61.080 55.000 0.30 0.00 34.99 3.33
726 727 0.244450 CGCATTGGAAGGCATGTTGT 59.756 50.000 0.00 0.00 34.99 3.32
727 728 1.717194 GCATTGGAAGGCATGTTGTG 58.283 50.000 0.00 0.00 35.46 3.33
728 729 1.001181 GCATTGGAAGGCATGTTGTGT 59.999 47.619 0.00 0.00 35.46 3.72
729 730 2.927871 GCATTGGAAGGCATGTTGTGTC 60.928 50.000 0.00 0.00 35.46 3.67
730 731 0.950836 TTGGAAGGCATGTTGTGTCG 59.049 50.000 0.00 0.00 37.56 4.35
731 732 0.888736 TGGAAGGCATGTTGTGTCGG 60.889 55.000 0.00 0.00 37.56 4.79
732 733 1.210155 GAAGGCATGTTGTGTCGGC 59.790 57.895 0.00 0.00 37.56 5.54
733 734 2.513065 GAAGGCATGTTGTGTCGGCG 62.513 60.000 0.00 0.00 37.56 6.46
734 735 3.353836 GGCATGTTGTGTCGGCGT 61.354 61.111 6.85 0.00 0.00 5.68
735 736 2.173382 GCATGTTGTGTCGGCGTC 59.827 61.111 6.85 0.72 0.00 5.19
736 737 2.860293 CATGTTGTGTCGGCGTCC 59.140 61.111 6.85 0.00 0.00 4.79
746 747 3.496131 CGGCGTCCGGACCATTTG 61.496 66.667 28.52 15.13 44.15 2.32
747 748 3.131478 GGCGTCCGGACCATTTGG 61.131 66.667 28.52 14.39 42.17 3.28
748 749 3.131478 GCGTCCGGACCATTTGGG 61.131 66.667 28.52 13.65 44.81 4.12
749 750 2.437716 CGTCCGGACCATTTGGGG 60.438 66.667 28.52 8.24 42.91 4.96
750 751 2.761160 GTCCGGACCATTTGGGGT 59.239 61.111 24.75 0.00 46.02 4.95
751 752 1.076014 GTCCGGACCATTTGGGGTT 59.924 57.895 24.75 0.00 42.53 4.11
752 753 1.075836 TCCGGACCATTTGGGGTTG 59.924 57.895 0.00 0.00 42.53 3.77
753 754 2.645192 CCGGACCATTTGGGGTTGC 61.645 63.158 0.00 0.00 42.53 4.17
754 755 2.969827 GGACCATTTGGGGTTGCG 59.030 61.111 0.96 0.00 42.53 4.85
755 756 2.261361 GACCATTTGGGGTTGCGC 59.739 61.111 0.00 0.00 42.53 6.09
756 757 3.625082 GACCATTTGGGGTTGCGCG 62.625 63.158 0.00 0.00 42.53 6.86
757 758 3.679738 CCATTTGGGGTTGCGCGT 61.680 61.111 8.43 0.00 0.00 6.01
758 759 2.338257 CATTTGGGGTTGCGCGTT 59.662 55.556 8.43 0.00 0.00 4.84
759 760 2.021039 CATTTGGGGTTGCGCGTTG 61.021 57.895 8.43 0.00 0.00 4.10
760 761 3.219645 ATTTGGGGTTGCGCGTTGG 62.220 57.895 8.43 0.00 0.00 3.77
761 762 4.877619 TTGGGGTTGCGCGTTGGA 62.878 61.111 8.43 0.00 0.00 3.53
764 765 3.284449 GGGTTGCGCGTTGGAGTT 61.284 61.111 8.43 0.00 0.00 3.01
765 766 2.051345 GGTTGCGCGTTGGAGTTG 60.051 61.111 8.43 0.00 0.00 3.16
766 767 2.051345 GTTGCGCGTTGGAGTTGG 60.051 61.111 8.43 0.00 0.00 3.77
767 768 2.515057 TTGCGCGTTGGAGTTGGT 60.515 55.556 8.43 0.00 0.00 3.67
768 769 2.539338 TTGCGCGTTGGAGTTGGTC 61.539 57.895 8.43 0.00 0.00 4.02
769 770 2.665185 GCGCGTTGGAGTTGGTCT 60.665 61.111 8.43 0.00 0.00 3.85
770 771 2.668280 GCGCGTTGGAGTTGGTCTC 61.668 63.158 8.43 0.00 42.07 3.36
771 772 2.372690 CGCGTTGGAGTTGGTCTCG 61.373 63.158 0.00 0.00 43.60 4.04
772 773 2.027625 GCGTTGGAGTTGGTCTCGG 61.028 63.158 0.00 0.00 43.60 4.63
773 774 1.663739 CGTTGGAGTTGGTCTCGGA 59.336 57.895 0.00 0.00 43.60 4.55
774 775 0.032952 CGTTGGAGTTGGTCTCGGAA 59.967 55.000 0.00 0.00 43.60 4.30
775 776 1.509703 GTTGGAGTTGGTCTCGGAAC 58.490 55.000 0.00 0.00 43.60 3.62
793 794 0.885596 ACGGGAATTTGGCGTCGAAA 60.886 50.000 0.00 0.00 0.00 3.46
1571 1574 5.871396 AGCTCTCGAGGGTAAATGAATAA 57.129 39.130 15.13 0.00 0.00 1.40
1702 1705 4.455877 GTGTAGCTGTAGAAATGGCACTTT 59.544 41.667 0.00 0.00 0.00 2.66
1725 1728 5.768317 TGCTGCTGATAAAAAGGTGTTTAC 58.232 37.500 0.00 0.00 0.00 2.01
1759 1762 8.815565 TTTATCTATGCCATCTTTGTGGTTTA 57.184 30.769 0.00 0.00 41.47 2.01
1824 1827 6.663944 AATACTTTAGTGATCCAAACGCTC 57.336 37.500 0.00 0.00 0.00 5.03
1825 1828 4.273148 ACTTTAGTGATCCAAACGCTCT 57.727 40.909 0.00 0.00 0.00 4.09
1826 1829 4.642429 ACTTTAGTGATCCAAACGCTCTT 58.358 39.130 0.00 0.00 0.00 2.85
1827 1830 5.790593 ACTTTAGTGATCCAAACGCTCTTA 58.209 37.500 0.00 0.00 0.00 2.10
1828 1831 6.407202 ACTTTAGTGATCCAAACGCTCTTAT 58.593 36.000 0.00 0.00 0.00 1.73
1829 1832 7.553334 ACTTTAGTGATCCAAACGCTCTTATA 58.447 34.615 0.00 0.00 0.00 0.98
1830 1833 8.204836 ACTTTAGTGATCCAAACGCTCTTATAT 58.795 33.333 0.00 0.00 0.00 0.86
1831 1834 8.958119 TTTAGTGATCCAAACGCTCTTATATT 57.042 30.769 0.00 0.00 0.00 1.28
1832 1835 8.958119 TTAGTGATCCAAACGCTCTTATATTT 57.042 30.769 0.00 0.00 0.00 1.40
1833 1836 7.484035 AGTGATCCAAACGCTCTTATATTTC 57.516 36.000 0.00 0.00 0.00 2.17
1834 1837 7.275920 AGTGATCCAAACGCTCTTATATTTCT 58.724 34.615 0.00 0.00 0.00 2.52
1835 1838 7.770897 AGTGATCCAAACGCTCTTATATTTCTT 59.229 33.333 0.00 0.00 0.00 2.52
1836 1839 8.398665 GTGATCCAAACGCTCTTATATTTCTTT 58.601 33.333 0.00 0.00 0.00 2.52
1837 1840 9.607988 TGATCCAAACGCTCTTATATTTCTTTA 57.392 29.630 0.00 0.00 0.00 1.85
1838 1841 9.865484 GATCCAAACGCTCTTATATTTCTTTAC 57.135 33.333 0.00 0.00 0.00 2.01
1839 1842 7.902032 TCCAAACGCTCTTATATTTCTTTACG 58.098 34.615 0.00 0.00 0.00 3.18
1840 1843 7.010738 TCCAAACGCTCTTATATTTCTTTACGG 59.989 37.037 0.00 0.00 0.00 4.02
1841 1844 7.010738 CCAAACGCTCTTATATTTCTTTACGGA 59.989 37.037 0.00 0.00 0.00 4.69
1842 1845 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
1843 1846 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
1844 1847 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
1845 1848 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
1846 1849 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
1847 1850 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
1948 1951 1.834822 GACGCCATCTCTAGCCCCT 60.835 63.158 0.00 0.00 0.00 4.79
2146 2150 3.008923 TGTCAGTCATTCACCAGCCATAA 59.991 43.478 0.00 0.00 0.00 1.90
2210 2214 8.587952 TGATGTAAGACCATATTATGTGTTCG 57.412 34.615 3.10 0.00 0.00 3.95
2460 2464 9.744468 AACACATTTGTTAAGGTGAGAAATTAC 57.256 29.630 9.33 0.00 46.18 1.89
2461 2465 8.357402 ACACATTTGTTAAGGTGAGAAATTACC 58.643 33.333 9.33 0.00 46.18 2.85
2463 2467 9.088987 ACATTTGTTAAGGTGAGAAATTACCAT 57.911 29.630 0.00 0.00 39.46 3.55
3012 3024 2.931325 GCTTCTGACTGCTCTGAATGAG 59.069 50.000 0.00 0.00 45.33 2.90
3434 3446 5.125578 GCAGGGTAAGGAAAAACTTATCTGG 59.874 44.000 14.74 3.94 37.44 3.86
3498 3510 6.404403 GGGCTCATTTAACTAGGTAACAAAGC 60.404 42.308 14.55 14.55 41.41 3.51
3629 3641 3.482436 TCCATTTAAGTTGGAACGCTGT 58.518 40.909 6.73 0.00 40.29 4.40
3806 3818 3.025262 CCCTCTGGTTACTCTACTGTCC 58.975 54.545 0.00 0.00 0.00 4.02
3936 3948 8.754230 TCGAGCTATTCTTATTCATCAATCAG 57.246 34.615 0.00 0.00 0.00 2.90
3943 3955 8.693120 ATTCTTATTCATCAATCAGTCATGCT 57.307 30.769 0.00 0.00 0.00 3.79
4378 4505 8.611051 AGGTACTATTGGAGTTCAAAGAGTAT 57.389 34.615 10.84 0.00 38.73 2.12
4642 4769 2.871263 GAGCTCTTCTTTTGTGCTCG 57.129 50.000 6.43 0.00 40.25 5.03
5240 5370 4.893424 TTTTTGGGTTGAGAACGAGAAG 57.107 40.909 0.00 0.00 0.00 2.85
5406 5546 4.199310 TGTAGGCTGTTCTCAATAATGCC 58.801 43.478 0.00 0.00 39.19 4.40
5536 5676 6.884472 TCCTTTGTTTGTCAGATATCCCTA 57.116 37.500 0.00 0.00 0.00 3.53
5974 6114 0.179062 GCATCTTCAGGGTCAGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
6051 6191 2.631160 TCGAGCCAGTTTTTCTCCAA 57.369 45.000 0.00 0.00 0.00 3.53
6090 6230 1.194781 TTCCCTGCAGACCTCCACTC 61.195 60.000 17.39 0.00 0.00 3.51
6442 6582 1.071471 CCTGGAGCACCAAACTCGT 59.929 57.895 3.90 0.00 46.32 4.18
6501 6641 1.810151 TGGTATTTCAGCGACAAAGGC 59.190 47.619 0.00 0.00 0.00 4.35
6503 6643 2.488153 GGTATTTCAGCGACAAAGGCTT 59.512 45.455 0.00 0.00 39.08 4.35
6513 6653 0.032952 ACAAAGGCTTGCTGCATGTG 59.967 50.000 15.71 9.19 45.39 3.21
6543 6683 0.819582 AAGATGGCAAAATGGAGCGG 59.180 50.000 0.00 0.00 0.00 5.52
6634 6774 6.340522 AGTTGTTTTGATTTGCTTAGCTGTT 58.659 32.000 5.60 0.00 0.00 3.16
6635 6775 6.818142 AGTTGTTTTGATTTGCTTAGCTGTTT 59.182 30.769 5.60 0.00 0.00 2.83
6636 6776 6.586868 TGTTTTGATTTGCTTAGCTGTTTG 57.413 33.333 5.60 0.00 0.00 2.93
6637 6777 5.523188 TGTTTTGATTTGCTTAGCTGTTTGG 59.477 36.000 5.60 0.00 0.00 3.28
6672 6816 3.118702 GGCCTTAGGACTTGTAGAGAACC 60.119 52.174 0.69 0.00 0.00 3.62
6686 6830 3.901797 GAACCCCTGTGGCGAGTGG 62.902 68.421 0.00 0.00 37.83 4.00
6914 7058 1.134995 TGCTGTATCTGTCTGCGAAGG 60.135 52.381 0.00 0.00 33.56 3.46
7110 7254 1.867233 CGGTTATGAGCATACACAGGC 59.133 52.381 0.00 0.00 0.00 4.85
7342 7486 6.313658 TCTGATTTGATGAGTAAACATGACGG 59.686 38.462 0.00 0.00 0.00 4.79
7358 7502 0.179067 ACGGTTTTTGACGGCAGAGA 60.179 50.000 0.00 0.00 32.21 3.10
7499 7657 4.447138 AAACTGGTAGGTTTCATGACCA 57.553 40.909 6.37 4.19 42.35 4.02
7513 7671 5.327616 TCATGACCAATCGATGCAAAAAT 57.672 34.783 0.00 0.00 0.00 1.82
7514 7672 6.448207 TCATGACCAATCGATGCAAAAATA 57.552 33.333 0.00 0.00 0.00 1.40
7550 7708 5.709966 ACAAGAGTTTTCCAACTTGTTGTC 58.290 37.500 11.82 2.93 46.69 3.18
7555 7713 6.868339 AGAGTTTTCCAACTTGTTGTCAAAAG 59.132 34.615 11.82 0.00 43.79 2.27
7579 7739 3.685836 ACAAAAGAGTGCCAACGTTAC 57.314 42.857 0.00 0.00 0.00 2.50
7608 7805 2.495084 GATTTCCGACCTAAGGGCATC 58.505 52.381 0.00 0.00 35.63 3.91
7611 7808 0.759436 TCCGACCTAAGGGCATCTCC 60.759 60.000 0.00 0.00 35.63 3.71
7612 7809 1.048724 CCGACCTAAGGGCATCTCCA 61.049 60.000 0.00 0.00 36.21 3.86
7621 7818 5.474876 CCTAAGGGCATCTCCAAATACATTC 59.525 44.000 0.00 0.00 36.21 2.67
7631 7828 6.899089 TCTCCAAATACATTCTGCTATCCAA 58.101 36.000 0.00 0.00 0.00 3.53
7690 7908 5.064452 TCGCCTAAACGAAAACAAACTTGTA 59.936 36.000 0.00 0.00 38.77 2.41
7694 7912 7.645402 CCTAAACGAAAACAAACTTGTAGGAT 58.355 34.615 0.00 0.00 41.31 3.24
7808 9307 3.107601 CCTTCCTCCTTGGTCTGTATCA 58.892 50.000 0.00 0.00 37.07 2.15
7876 9380 0.472471 TTCTTGTTGGACCTCCGCTT 59.528 50.000 0.00 0.00 39.43 4.68
7976 9482 2.563798 CCATGGCAAACACCACGCT 61.564 57.895 0.00 0.00 44.17 5.07
8063 9569 2.125326 CGATGGCAGGGTACTCGGA 61.125 63.158 0.00 0.00 0.00 4.55
8110 9616 1.527854 TGGTTGGCCACAAGTACGT 59.472 52.632 3.88 0.00 40.46 3.57
8242 10859 4.559300 GCAATGTGAAGTTGCTACACCATT 60.559 41.667 0.13 0.85 46.34 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.543067 GATTTGAGCTCACCCCGGCT 62.543 60.000 18.03 0.00 41.88 5.52
1 2 2.044946 ATTTGAGCTCACCCCGGC 60.045 61.111 18.03 0.00 0.00 6.13
2 3 1.452108 GGATTTGAGCTCACCCCGG 60.452 63.158 18.03 0.00 0.00 5.73
3 4 1.815421 CGGATTTGAGCTCACCCCG 60.815 63.158 26.05 26.05 0.00 5.73
4 5 1.452108 CCGGATTTGAGCTCACCCC 60.452 63.158 18.03 16.07 0.00 4.95
5 6 2.115291 GCCGGATTTGAGCTCACCC 61.115 63.158 18.03 16.43 0.00 4.61
6 7 2.115291 GGCCGGATTTGAGCTCACC 61.115 63.158 18.03 13.92 0.00 4.02
7 8 2.464459 CGGCCGGATTTGAGCTCAC 61.464 63.158 20.10 4.92 0.00 3.51
8 9 2.125147 CGGCCGGATTTGAGCTCA 60.125 61.111 20.10 13.74 0.00 4.26
9 10 2.897350 CCGGCCGGATTTGAGCTC 60.897 66.667 41.82 6.82 37.50 4.09
10 11 3.399181 TCCGGCCGGATTTGAGCT 61.399 61.111 42.66 0.00 39.76 4.09
26 27 1.587547 GGACAGATTTGGAGCGGATC 58.412 55.000 0.00 0.00 0.00 3.36
27 28 0.179073 CGGACAGATTTGGAGCGGAT 60.179 55.000 0.00 0.00 0.00 4.18
28 29 1.218047 CGGACAGATTTGGAGCGGA 59.782 57.895 0.00 0.00 0.00 5.54
29 30 2.464459 GCGGACAGATTTGGAGCGG 61.464 63.158 0.00 0.00 0.00 5.52
30 31 2.464459 GGCGGACAGATTTGGAGCG 61.464 63.158 0.00 0.00 0.00 5.03
31 32 2.464459 CGGCGGACAGATTTGGAGC 61.464 63.158 0.00 0.00 0.00 4.70
32 33 1.815421 CCGGCGGACAGATTTGGAG 60.815 63.158 24.41 0.00 0.00 3.86
33 34 1.622607 ATCCGGCGGACAGATTTGGA 61.623 55.000 33.71 4.63 32.98 3.53
34 35 1.153168 ATCCGGCGGACAGATTTGG 60.153 57.895 33.71 0.00 32.98 3.28
35 36 2.016961 CATCCGGCGGACAGATTTG 58.983 57.895 33.71 20.73 32.98 2.32
36 37 1.819632 GCATCCGGCGGACAGATTT 60.820 57.895 33.71 11.91 32.98 2.17
37 38 2.203070 GCATCCGGCGGACAGATT 60.203 61.111 33.71 12.81 32.98 2.40
46 47 2.329339 GATTTCAGCGCATCCGGC 59.671 61.111 11.47 0.00 39.90 6.13
47 48 1.645455 CTGATTTCAGCGCATCCGG 59.355 57.895 11.47 0.00 37.15 5.14
48 49 1.091771 ACCTGATTTCAGCGCATCCG 61.092 55.000 11.47 0.00 42.47 4.18
49 50 0.379669 CACCTGATTTCAGCGCATCC 59.620 55.000 11.47 0.00 42.47 3.51
50 51 0.379669 CCACCTGATTTCAGCGCATC 59.620 55.000 11.47 4.03 42.47 3.91
51 52 1.660560 GCCACCTGATTTCAGCGCAT 61.661 55.000 11.47 0.00 42.47 4.73
52 53 2.334946 GCCACCTGATTTCAGCGCA 61.335 57.895 11.47 0.00 42.47 6.09
53 54 2.486966 GCCACCTGATTTCAGCGC 59.513 61.111 0.00 0.00 42.47 5.92
54 55 2.753966 CGGCCACCTGATTTCAGCG 61.754 63.158 2.24 0.00 42.47 5.18
55 56 2.409870 CCGGCCACCTGATTTCAGC 61.410 63.158 2.24 0.00 42.47 4.26
56 57 1.750399 CCCGGCCACCTGATTTCAG 60.750 63.158 2.24 0.39 43.40 3.02
57 58 2.354729 CCCGGCCACCTGATTTCA 59.645 61.111 2.24 0.00 0.00 2.69
58 59 2.440247 CCCCGGCCACCTGATTTC 60.440 66.667 2.24 0.00 0.00 2.17
59 60 2.852281 AACCCCGGCCACCTGATTT 61.852 57.895 2.24 0.00 0.00 2.17
60 61 3.264845 AACCCCGGCCACCTGATT 61.265 61.111 2.24 0.00 0.00 2.57
61 62 4.047125 CAACCCCGGCCACCTGAT 62.047 66.667 2.24 0.00 0.00 2.90
70 71 4.410400 GGAGCTGTCCAACCCCGG 62.410 72.222 0.00 0.00 43.31 5.73
71 72 4.760047 CGGAGCTGTCCAACCCCG 62.760 72.222 0.00 0.00 44.18 5.73
72 73 4.410400 CCGGAGCTGTCCAACCCC 62.410 72.222 0.00 0.00 44.18 4.95
73 74 4.410400 CCCGGAGCTGTCCAACCC 62.410 72.222 0.73 0.00 44.18 4.11
84 85 3.755628 TTTCCTCGACGCCCGGAG 61.756 66.667 0.73 0.00 39.14 4.63
85 86 4.060038 GTTTCCTCGACGCCCGGA 62.060 66.667 0.73 0.00 39.14 5.14
89 90 3.984200 CTCCCGTTTCCTCGACGCC 62.984 68.421 0.00 0.00 39.09 5.68
90 91 2.506438 CTCCCGTTTCCTCGACGC 60.506 66.667 0.00 0.00 39.09 5.19
91 92 2.506438 GCTCCCGTTTCCTCGACG 60.506 66.667 0.00 0.00 40.05 5.12
92 93 1.446272 CAGCTCCCGTTTCCTCGAC 60.446 63.158 0.00 0.00 0.00 4.20
93 94 2.970639 CAGCTCCCGTTTCCTCGA 59.029 61.111 0.00 0.00 0.00 4.04
94 95 2.815647 GCAGCTCCCGTTTCCTCG 60.816 66.667 0.00 0.00 0.00 4.63
95 96 2.781595 TTCGCAGCTCCCGTTTCCTC 62.782 60.000 3.53 0.00 0.00 3.71
96 97 2.391724 TTTCGCAGCTCCCGTTTCCT 62.392 55.000 3.53 0.00 0.00 3.36
97 98 1.912371 CTTTCGCAGCTCCCGTTTCC 61.912 60.000 3.53 0.00 0.00 3.13
98 99 1.497722 CTTTCGCAGCTCCCGTTTC 59.502 57.895 3.53 0.00 0.00 2.78
99 100 1.966451 CCTTTCGCAGCTCCCGTTT 60.966 57.895 3.53 0.00 0.00 3.60
100 101 2.358737 CCTTTCGCAGCTCCCGTT 60.359 61.111 3.53 0.00 0.00 4.44
101 102 4.394712 CCCTTTCGCAGCTCCCGT 62.395 66.667 3.53 0.00 0.00 5.28
103 104 3.689002 CTCCCCTTTCGCAGCTCCC 62.689 68.421 0.00 0.00 0.00 4.30
104 105 2.124942 CTCCCCTTTCGCAGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
105 106 2.124942 CCTCCCCTTTCGCAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
106 107 3.721706 CCCTCCCCTTTCGCAGCT 61.722 66.667 0.00 0.00 0.00 4.24
107 108 4.803908 CCCCTCCCCTTTCGCAGC 62.804 72.222 0.00 0.00 0.00 5.25
108 109 4.803908 GCCCCTCCCCTTTCGCAG 62.804 72.222 0.00 0.00 0.00 5.18
479 480 2.962253 GGTCGTGCGCTATCCAGC 60.962 66.667 9.73 0.00 44.90 4.85
480 481 2.655364 CGGTCGTGCGCTATCCAG 60.655 66.667 9.73 0.00 0.00 3.86
481 482 3.120979 CTCGGTCGTGCGCTATCCA 62.121 63.158 9.73 0.00 0.00 3.41
482 483 2.332362 TTCTCGGTCGTGCGCTATCC 62.332 60.000 9.73 5.18 0.00 2.59
483 484 0.524816 TTTCTCGGTCGTGCGCTATC 60.525 55.000 9.73 0.00 0.00 2.08
484 485 0.108992 TTTTCTCGGTCGTGCGCTAT 60.109 50.000 9.73 0.00 0.00 2.97
485 486 0.318869 TTTTTCTCGGTCGTGCGCTA 60.319 50.000 9.73 0.00 0.00 4.26
486 487 0.949105 ATTTTTCTCGGTCGTGCGCT 60.949 50.000 9.73 0.00 0.00 5.92
487 488 0.789383 CATTTTTCTCGGTCGTGCGC 60.789 55.000 0.00 0.00 0.00 6.09
488 489 0.787787 TCATTTTTCTCGGTCGTGCG 59.212 50.000 0.00 0.00 0.00 5.34
489 490 1.461888 CGTCATTTTTCTCGGTCGTGC 60.462 52.381 0.00 0.00 0.00 5.34
490 491 1.126113 CCGTCATTTTTCTCGGTCGTG 59.874 52.381 0.00 0.00 38.45 4.35
491 492 1.425412 CCGTCATTTTTCTCGGTCGT 58.575 50.000 0.00 0.00 38.45 4.34
492 493 0.094730 GCCGTCATTTTTCTCGGTCG 59.905 55.000 0.00 0.00 44.07 4.79
493 494 0.094730 CGCCGTCATTTTTCTCGGTC 59.905 55.000 0.00 0.00 44.07 4.79
494 495 0.320073 TCGCCGTCATTTTTCTCGGT 60.320 50.000 0.00 0.00 44.07 4.69
495 496 1.006832 ATCGCCGTCATTTTTCTCGG 58.993 50.000 0.00 0.00 44.86 4.63
496 497 1.267532 CCATCGCCGTCATTTTTCTCG 60.268 52.381 0.00 0.00 0.00 4.04
497 498 1.064060 CCCATCGCCGTCATTTTTCTC 59.936 52.381 0.00 0.00 0.00 2.87
498 499 1.094785 CCCATCGCCGTCATTTTTCT 58.905 50.000 0.00 0.00 0.00 2.52
499 500 0.100503 CCCCATCGCCGTCATTTTTC 59.899 55.000 0.00 0.00 0.00 2.29
500 501 1.319614 CCCCCATCGCCGTCATTTTT 61.320 55.000 0.00 0.00 0.00 1.94
501 502 1.752694 CCCCCATCGCCGTCATTTT 60.753 57.895 0.00 0.00 0.00 1.82
502 503 2.124320 CCCCCATCGCCGTCATTT 60.124 61.111 0.00 0.00 0.00 2.32
542 543 2.923852 ATTCCCCTCCCCTCTCCAGC 62.924 65.000 0.00 0.00 0.00 4.85
543 544 0.568192 TATTCCCCTCCCCTCTCCAG 59.432 60.000 0.00 0.00 0.00 3.86
544 545 0.568192 CTATTCCCCTCCCCTCTCCA 59.432 60.000 0.00 0.00 0.00 3.86
545 546 0.868186 TCTATTCCCCTCCCCTCTCC 59.132 60.000 0.00 0.00 0.00 3.71
546 547 2.797285 TTCTATTCCCCTCCCCTCTC 57.203 55.000 0.00 0.00 0.00 3.20
547 548 3.526360 TTTTCTATTCCCCTCCCCTCT 57.474 47.619 0.00 0.00 0.00 3.69
548 549 3.117474 CCTTTTTCTATTCCCCTCCCCTC 60.117 52.174 0.00 0.00 0.00 4.30
549 550 2.859404 CCTTTTTCTATTCCCCTCCCCT 59.141 50.000 0.00 0.00 0.00 4.79
550 551 2.091278 CCCTTTTTCTATTCCCCTCCCC 60.091 54.545 0.00 0.00 0.00 4.81
551 552 2.091278 CCCCTTTTTCTATTCCCCTCCC 60.091 54.545 0.00 0.00 0.00 4.30
552 553 2.690026 GCCCCTTTTTCTATTCCCCTCC 60.690 54.545 0.00 0.00 0.00 4.30
553 554 2.667470 GCCCCTTTTTCTATTCCCCTC 58.333 52.381 0.00 0.00 0.00 4.30
554 555 1.063942 CGCCCCTTTTTCTATTCCCCT 60.064 52.381 0.00 0.00 0.00 4.79
555 556 1.399714 CGCCCCTTTTTCTATTCCCC 58.600 55.000 0.00 0.00 0.00 4.81
556 557 0.744874 GCGCCCCTTTTTCTATTCCC 59.255 55.000 0.00 0.00 0.00 3.97
557 558 1.470051 TGCGCCCCTTTTTCTATTCC 58.530 50.000 4.18 0.00 0.00 3.01
558 559 2.427095 ACATGCGCCCCTTTTTCTATTC 59.573 45.455 4.18 0.00 0.00 1.75
559 560 2.166254 CACATGCGCCCCTTTTTCTATT 59.834 45.455 4.18 0.00 0.00 1.73
560 561 1.750778 CACATGCGCCCCTTTTTCTAT 59.249 47.619 4.18 0.00 0.00 1.98
561 562 1.173043 CACATGCGCCCCTTTTTCTA 58.827 50.000 4.18 0.00 0.00 2.10
562 563 0.827507 ACACATGCGCCCCTTTTTCT 60.828 50.000 4.18 0.00 0.00 2.52
563 564 0.388520 GACACATGCGCCCCTTTTTC 60.389 55.000 4.18 0.00 0.00 2.29
564 565 1.665442 GACACATGCGCCCCTTTTT 59.335 52.632 4.18 0.00 0.00 1.94
565 566 2.275380 GGACACATGCGCCCCTTTT 61.275 57.895 4.18 0.00 0.00 2.27
566 567 2.676471 GGACACATGCGCCCCTTT 60.676 61.111 4.18 0.00 0.00 3.11
567 568 3.628646 GAGGACACATGCGCCCCTT 62.629 63.158 4.18 0.00 0.00 3.95
568 569 4.101448 GAGGACACATGCGCCCCT 62.101 66.667 4.18 1.24 0.00 4.79
570 571 4.451150 TCGAGGACACATGCGCCC 62.451 66.667 4.18 0.00 0.00 6.13
571 572 3.188786 GTCGAGGACACATGCGCC 61.189 66.667 4.18 0.00 32.09 6.53
572 573 3.545481 CGTCGAGGACACATGCGC 61.545 66.667 0.00 0.00 32.09 6.09
573 574 2.880879 CCGTCGAGGACACATGCG 60.881 66.667 6.70 0.00 45.00 4.73
574 575 2.509336 CCCGTCGAGGACACATGC 60.509 66.667 6.70 0.00 45.00 4.06
575 576 2.509336 GCCCGTCGAGGACACATG 60.509 66.667 6.70 0.00 45.00 3.21
576 577 4.129737 CGCCCGTCGAGGACACAT 62.130 66.667 6.70 0.00 45.00 3.21
592 593 2.203998 ATATCCTCCCCTGGCCCG 60.204 66.667 0.00 0.00 0.00 6.13
593 594 2.234296 CCATATCCTCCCCTGGCCC 61.234 68.421 0.00 0.00 0.00 5.80
594 595 2.234296 CCCATATCCTCCCCTGGCC 61.234 68.421 0.00 0.00 0.00 5.36
595 596 2.911926 GCCCATATCCTCCCCTGGC 61.912 68.421 0.00 0.00 0.00 4.85
596 597 1.464001 TGCCCATATCCTCCCCTGG 60.464 63.158 0.00 0.00 0.00 4.45
597 598 1.763770 GTGCCCATATCCTCCCCTG 59.236 63.158 0.00 0.00 0.00 4.45
598 599 1.843376 CGTGCCCATATCCTCCCCT 60.843 63.158 0.00 0.00 0.00 4.79
599 600 2.750350 CGTGCCCATATCCTCCCC 59.250 66.667 0.00 0.00 0.00 4.81
600 601 2.032681 GCGTGCCCATATCCTCCC 59.967 66.667 0.00 0.00 0.00 4.30
601 602 2.357517 CGCGTGCCCATATCCTCC 60.358 66.667 0.00 0.00 0.00 4.30
602 603 2.154798 TAGCGCGTGCCCATATCCTC 62.155 60.000 19.02 0.00 44.31 3.71
603 604 2.159819 CTAGCGCGTGCCCATATCCT 62.160 60.000 19.02 0.00 44.31 3.24
604 605 1.738099 CTAGCGCGTGCCCATATCC 60.738 63.158 19.02 0.00 44.31 2.59
605 606 1.738099 CCTAGCGCGTGCCCATATC 60.738 63.158 19.02 0.00 44.31 1.63
606 607 2.343758 CCTAGCGCGTGCCCATAT 59.656 61.111 19.02 0.25 44.31 1.78
607 608 4.602259 GCCTAGCGCGTGCCCATA 62.602 66.667 19.02 2.48 44.31 2.74
628 629 2.963320 AAACGGACACGCGTGGAC 60.963 61.111 39.21 30.61 46.04 4.02
629 630 2.702751 ATCAAACGGACACGCGTGGA 62.703 55.000 39.21 25.81 46.04 4.02
630 631 2.222953 GATCAAACGGACACGCGTGG 62.223 60.000 39.21 25.48 46.04 4.94
631 632 1.129809 GATCAAACGGACACGCGTG 59.870 57.895 35.99 35.99 46.04 5.34
632 633 2.369629 CGATCAAACGGACACGCGT 61.370 57.895 5.58 5.58 46.04 6.01
633 634 1.610715 TTCGATCAAACGGACACGCG 61.611 55.000 3.53 3.53 46.04 6.01
634 635 0.509499 TTTCGATCAAACGGACACGC 59.491 50.000 0.00 0.00 46.04 5.34
650 651 0.528901 AAAAGTTGGGCCGCGTTTTC 60.529 50.000 4.92 0.00 0.00 2.29
651 652 0.808060 CAAAAGTTGGGCCGCGTTTT 60.808 50.000 4.92 0.00 0.00 2.43
652 653 1.227118 CAAAAGTTGGGCCGCGTTT 60.227 52.632 4.92 2.45 0.00 3.60
653 654 2.415426 CAAAAGTTGGGCCGCGTT 59.585 55.556 4.92 0.00 0.00 4.84
663 664 2.159156 GCTTTCGACCCAACCAAAAGTT 60.159 45.455 0.00 0.00 40.16 2.66
664 665 1.407618 GCTTTCGACCCAACCAAAAGT 59.592 47.619 0.00 0.00 31.24 2.66
665 666 1.599419 CGCTTTCGACCCAACCAAAAG 60.599 52.381 0.00 0.00 38.10 2.27
666 667 0.382515 CGCTTTCGACCCAACCAAAA 59.617 50.000 0.00 0.00 38.10 2.44
667 668 0.464013 TCGCTTTCGACCCAACCAAA 60.464 50.000 0.00 0.00 40.21 3.28
668 669 0.464013 TTCGCTTTCGACCCAACCAA 60.464 50.000 0.00 0.00 45.43 3.67
669 670 1.146485 TTCGCTTTCGACCCAACCA 59.854 52.632 0.00 0.00 45.43 3.67
670 671 1.572941 GTTCGCTTTCGACCCAACC 59.427 57.895 0.00 0.00 45.43 3.77
671 672 1.203313 CGTTCGCTTTCGACCCAAC 59.797 57.895 0.00 0.00 45.43 3.77
672 673 1.067749 TCGTTCGCTTTCGACCCAA 59.932 52.632 0.00 0.00 45.43 4.12
673 674 1.662446 GTCGTTCGCTTTCGACCCA 60.662 57.895 11.40 0.00 46.83 4.51
674 675 3.153609 GTCGTTCGCTTTCGACCC 58.846 61.111 11.40 0.00 46.83 4.46
677 678 2.127342 GAACGTCGTTCGCTTTCGA 58.873 52.632 21.32 0.00 44.19 3.71
678 679 4.673635 GAACGTCGTTCGCTTTCG 57.326 55.556 21.32 0.00 44.19 3.46
688 689 2.851104 GGGAGCAAACGAACGTCG 59.149 61.111 0.00 5.97 46.93 5.12
689 690 2.851104 CGGGAGCAAACGAACGTC 59.149 61.111 0.00 0.00 0.00 4.34
701 702 3.204827 CCTTCCAATGCGCGGGAG 61.205 66.667 8.83 8.08 34.02 4.30
704 705 3.520862 ATGCCTTCCAATGCGCGG 61.521 61.111 8.83 0.00 0.00 6.46
705 706 2.278336 CATGCCTTCCAATGCGCG 60.278 61.111 0.00 0.00 0.00 6.86
706 707 1.079875 CAACATGCCTTCCAATGCGC 61.080 55.000 0.00 0.00 0.00 6.09
707 708 0.244450 ACAACATGCCTTCCAATGCG 59.756 50.000 0.00 0.00 0.00 4.73
708 709 1.001181 ACACAACATGCCTTCCAATGC 59.999 47.619 0.00 0.00 0.00 3.56
709 710 2.669113 CGACACAACATGCCTTCCAATG 60.669 50.000 0.00 0.00 0.00 2.82
710 711 1.541147 CGACACAACATGCCTTCCAAT 59.459 47.619 0.00 0.00 0.00 3.16
711 712 0.950836 CGACACAACATGCCTTCCAA 59.049 50.000 0.00 0.00 0.00 3.53
712 713 0.888736 CCGACACAACATGCCTTCCA 60.889 55.000 0.00 0.00 0.00 3.53
713 714 1.875963 CCGACACAACATGCCTTCC 59.124 57.895 0.00 0.00 0.00 3.46
714 715 1.210155 GCCGACACAACATGCCTTC 59.790 57.895 0.00 0.00 0.00 3.46
715 716 2.616330 CGCCGACACAACATGCCTT 61.616 57.895 0.00 0.00 0.00 4.35
716 717 3.049674 CGCCGACACAACATGCCT 61.050 61.111 0.00 0.00 0.00 4.75
717 718 3.308878 GACGCCGACACAACATGCC 62.309 63.158 0.00 0.00 0.00 4.40
718 719 2.173382 GACGCCGACACAACATGC 59.827 61.111 0.00 0.00 0.00 4.06
719 720 2.860293 GGACGCCGACACAACATG 59.140 61.111 0.00 0.00 0.00 3.21
730 731 3.131478 CCAAATGGTCCGGACGCC 61.131 66.667 27.68 16.23 0.00 5.68
731 732 3.131478 CCCAAATGGTCCGGACGC 61.131 66.667 27.68 20.28 0.00 5.19
732 733 2.437716 CCCCAAATGGTCCGGACG 60.438 66.667 27.68 13.63 0.00 4.79
733 734 1.076014 AACCCCAAATGGTCCGGAC 59.924 57.895 27.04 27.04 37.76 4.79
734 735 1.075836 CAACCCCAAATGGTCCGGA 59.924 57.895 0.00 0.00 37.76 5.14
735 736 2.645192 GCAACCCCAAATGGTCCGG 61.645 63.158 0.00 0.00 37.76 5.14
736 737 2.969827 GCAACCCCAAATGGTCCG 59.030 61.111 0.00 0.00 37.76 4.79
737 738 2.969827 CGCAACCCCAAATGGTCC 59.030 61.111 0.00 0.00 37.76 4.46
738 739 2.261361 GCGCAACCCCAAATGGTC 59.739 61.111 0.30 0.00 37.76 4.02
739 740 3.679738 CGCGCAACCCCAAATGGT 61.680 61.111 8.75 0.00 41.55 3.55
740 741 3.219645 AACGCGCAACCCCAAATGG 62.220 57.895 5.73 0.00 0.00 3.16
741 742 2.021039 CAACGCGCAACCCCAAATG 61.021 57.895 5.73 0.00 0.00 2.32
742 743 2.338257 CAACGCGCAACCCCAAAT 59.662 55.556 5.73 0.00 0.00 2.32
743 744 3.905678 CCAACGCGCAACCCCAAA 61.906 61.111 5.73 0.00 0.00 3.28
744 745 4.877619 TCCAACGCGCAACCCCAA 62.878 61.111 5.73 0.00 0.00 4.12
747 748 3.284449 AACTCCAACGCGCAACCC 61.284 61.111 5.73 0.00 0.00 4.11
748 749 2.051345 CAACTCCAACGCGCAACC 60.051 61.111 5.73 0.00 0.00 3.77
749 750 2.051345 CCAACTCCAACGCGCAAC 60.051 61.111 5.73 0.00 0.00 4.17
750 751 2.515057 ACCAACTCCAACGCGCAA 60.515 55.556 5.73 0.00 0.00 4.85
751 752 2.970324 GACCAACTCCAACGCGCA 60.970 61.111 5.73 0.00 0.00 6.09
752 753 2.665185 AGACCAACTCCAACGCGC 60.665 61.111 5.73 0.00 0.00 6.86
753 754 2.372690 CGAGACCAACTCCAACGCG 61.373 63.158 3.53 3.53 42.18 6.01
754 755 2.027625 CCGAGACCAACTCCAACGC 61.028 63.158 0.00 0.00 42.18 4.84
755 756 0.032952 TTCCGAGACCAACTCCAACG 59.967 55.000 0.00 0.00 42.18 4.10
756 757 1.509703 GTTCCGAGACCAACTCCAAC 58.490 55.000 0.00 0.00 42.18 3.77
757 758 0.032952 CGTTCCGAGACCAACTCCAA 59.967 55.000 0.00 0.00 42.18 3.53
758 759 1.663739 CGTTCCGAGACCAACTCCA 59.336 57.895 0.00 0.00 42.18 3.86
759 760 1.080025 CCGTTCCGAGACCAACTCC 60.080 63.158 0.00 0.00 42.18 3.85
760 761 1.080025 CCCGTTCCGAGACCAACTC 60.080 63.158 0.00 0.00 41.79 3.01
761 762 1.117142 TTCCCGTTCCGAGACCAACT 61.117 55.000 0.00 0.00 0.00 3.16
762 763 0.036671 ATTCCCGTTCCGAGACCAAC 60.037 55.000 0.00 0.00 0.00 3.77
763 764 0.688487 AATTCCCGTTCCGAGACCAA 59.312 50.000 0.00 0.00 0.00 3.67
764 765 0.688487 AAATTCCCGTTCCGAGACCA 59.312 50.000 0.00 0.00 0.00 4.02
765 766 1.084289 CAAATTCCCGTTCCGAGACC 58.916 55.000 0.00 0.00 0.00 3.85
766 767 1.084289 CCAAATTCCCGTTCCGAGAC 58.916 55.000 0.00 0.00 0.00 3.36
767 768 0.675522 GCCAAATTCCCGTTCCGAGA 60.676 55.000 0.00 0.00 0.00 4.04
768 769 1.800681 GCCAAATTCCCGTTCCGAG 59.199 57.895 0.00 0.00 0.00 4.63
769 770 2.036006 CGCCAAATTCCCGTTCCGA 61.036 57.895 0.00 0.00 0.00 4.55
770 771 2.248274 GACGCCAAATTCCCGTTCCG 62.248 60.000 0.58 0.00 35.06 4.30
771 772 1.504900 GACGCCAAATTCCCGTTCC 59.495 57.895 0.58 0.00 35.06 3.62
772 773 1.133869 CGACGCCAAATTCCCGTTC 59.866 57.895 0.58 0.00 35.06 3.95
773 774 0.885596 TTCGACGCCAAATTCCCGTT 60.886 50.000 0.00 0.00 35.06 4.44
774 775 0.885596 TTTCGACGCCAAATTCCCGT 60.886 50.000 0.00 0.00 37.99 5.28
775 776 0.179200 CTTTCGACGCCAAATTCCCG 60.179 55.000 0.00 0.00 0.00 5.14
776 777 1.135774 GTCTTTCGACGCCAAATTCCC 60.136 52.381 0.00 0.00 0.00 3.97
781 782 1.067974 TCTCTGTCTTTCGACGCCAAA 59.932 47.619 0.00 0.00 43.21 3.28
793 794 8.472007 TTCTAGTCTCTTTTCTTTCTCTGTCT 57.528 34.615 0.00 0.00 0.00 3.41
796 797 9.139174 GTCATTCTAGTCTCTTTTCTTTCTCTG 57.861 37.037 0.00 0.00 0.00 3.35
798 799 9.705290 AAGTCATTCTAGTCTCTTTTCTTTCTC 57.295 33.333 0.00 0.00 0.00 2.87
804 805 5.864474 TCGCAAGTCATTCTAGTCTCTTTTC 59.136 40.000 0.00 0.00 39.48 2.29
806 807 5.392767 TCGCAAGTCATTCTAGTCTCTTT 57.607 39.130 0.00 0.00 39.48 2.52
1178 1181 2.676822 AGAGACGGCGAGGCAAGA 60.677 61.111 16.62 0.00 0.00 3.02
1375 1378 6.888105 ACATTTTGTTGAAGAAAATGACCCT 58.112 32.000 33.27 17.02 46.75 4.34
1404 1407 5.557136 CGTCTGAACTGAATTCGGCATATTC 60.557 44.000 14.40 10.62 42.68 1.75
1702 1705 4.935352 AAACACCTTTTTATCAGCAGCA 57.065 36.364 0.00 0.00 0.00 4.41
1816 1819 7.902032 TCCGTAAAGAAATATAAGAGCGTTTG 58.098 34.615 0.00 0.00 0.00 2.93
1821 1824 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
1824 1827 8.636213 TGTACTCCCTCCGTAAAGAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
1825 1828 8.537728 TGTACTCCCTCCGTAAAGAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
1826 1829 8.716674 ATGTACTCCCTCCGTAAAGAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
1827 1830 7.509659 AGATGTACTCCCTCCGTAAAGAAATAT 59.490 37.037 0.00 0.00 0.00 1.28
1828 1831 6.837568 AGATGTACTCCCTCCGTAAAGAAATA 59.162 38.462 0.00 0.00 0.00 1.40
1829 1832 5.661759 AGATGTACTCCCTCCGTAAAGAAAT 59.338 40.000 0.00 0.00 0.00 2.17
1830 1833 5.021458 AGATGTACTCCCTCCGTAAAGAAA 58.979 41.667 0.00 0.00 0.00 2.52
1831 1834 4.607239 AGATGTACTCCCTCCGTAAAGAA 58.393 43.478 0.00 0.00 0.00 2.52
1832 1835 4.246712 AGATGTACTCCCTCCGTAAAGA 57.753 45.455 0.00 0.00 0.00 2.52
1833 1836 5.009811 CCTAAGATGTACTCCCTCCGTAAAG 59.990 48.000 0.00 0.00 0.00 1.85
1834 1837 4.891756 CCTAAGATGTACTCCCTCCGTAAA 59.108 45.833 0.00 0.00 0.00 2.01
1835 1838 4.467769 CCTAAGATGTACTCCCTCCGTAA 58.532 47.826 0.00 0.00 0.00 3.18
1836 1839 3.749954 GCCTAAGATGTACTCCCTCCGTA 60.750 52.174 0.00 0.00 0.00 4.02
1837 1840 2.946785 CCTAAGATGTACTCCCTCCGT 58.053 52.381 0.00 0.00 0.00 4.69
1838 1841 1.614413 GCCTAAGATGTACTCCCTCCG 59.386 57.143 0.00 0.00 0.00 4.63
1839 1842 2.894765 GAGCCTAAGATGTACTCCCTCC 59.105 54.545 0.00 0.00 0.00 4.30
1840 1843 3.839778 AGAGCCTAAGATGTACTCCCTC 58.160 50.000 0.00 0.00 0.00 4.30
1841 1844 3.983533 AGAGCCTAAGATGTACTCCCT 57.016 47.619 0.00 0.00 0.00 4.20
1842 1845 5.184287 GTGATAGAGCCTAAGATGTACTCCC 59.816 48.000 0.00 0.00 0.00 4.30
1843 1846 6.007703 AGTGATAGAGCCTAAGATGTACTCC 58.992 44.000 0.00 0.00 0.00 3.85
1844 1847 7.447238 AGAAGTGATAGAGCCTAAGATGTACTC 59.553 40.741 0.00 0.00 0.00 2.59
1845 1848 7.294584 AGAAGTGATAGAGCCTAAGATGTACT 58.705 38.462 0.00 0.00 0.00 2.73
1846 1849 7.308951 GGAGAAGTGATAGAGCCTAAGATGTAC 60.309 44.444 0.00 0.00 0.00 2.90
1847 1850 6.717540 GGAGAAGTGATAGAGCCTAAGATGTA 59.282 42.308 0.00 0.00 0.00 2.29
1948 1951 4.083003 GGCGACAGAATATTTTTGTGACCA 60.083 41.667 10.26 0.00 0.00 4.02
2210 2214 0.394080 AAGCCTCAGATGCCAGAAGC 60.394 55.000 0.00 0.00 44.14 3.86
2499 2506 6.000840 TGGTTTGCTTCACACATGTTATAGA 58.999 36.000 0.00 0.00 0.00 1.98
2781 2793 1.725641 CTGCTGTCTTCCGCACATAA 58.274 50.000 0.00 0.00 31.95 1.90
3012 3024 2.625737 ACTGCATCATACTCTGTGCAC 58.374 47.619 10.75 10.75 42.13 4.57
3629 3641 6.109156 TGCTGTCTTGAATAGTACCAGAAA 57.891 37.500 0.00 0.00 0.00 2.52
3806 3818 1.591059 CTGAATCTCGGGCTCTGCG 60.591 63.158 0.00 0.00 0.00 5.18
3936 3948 5.926542 TGAGTTACAGAAACACTAGCATGAC 59.073 40.000 0.00 0.00 40.83 3.06
4099 4111 7.500892 TCAACATCATAACCACAACAGTAAACT 59.499 33.333 0.00 0.00 0.00 2.66
4100 4112 7.589954 GTCAACATCATAACCACAACAGTAAAC 59.410 37.037 0.00 0.00 0.00 2.01
4378 4505 1.142667 TCAACATCAACCTCTGTGGCA 59.857 47.619 0.00 0.00 40.22 4.92
5069 5196 7.015195 ACTCTTACACCATGCCAAAAGTTATTT 59.985 33.333 0.00 0.00 0.00 1.40
5235 5365 7.065923 GTGTACCCTTATGAACCAAATCTTCTC 59.934 40.741 0.00 0.00 0.00 2.87
5274 5405 7.013942 CCATTATTCATTCATTCAGCCAAGAGA 59.986 37.037 0.00 0.00 0.00 3.10
5406 5546 4.576053 TCAGGATTGTCTGTTTCAACTGTG 59.424 41.667 0.00 0.00 36.25 3.66
5536 5676 1.985159 ACACACATACCCAGTGGTCAT 59.015 47.619 8.74 0.00 43.06 3.06
5953 6093 0.392193 CGCTGACCCTGAAGATGCTT 60.392 55.000 0.00 0.00 0.00 3.91
5974 6114 9.660180 AACTTGGAGCAAAAACAATAAAAAGTA 57.340 25.926 0.00 0.00 0.00 2.24
6051 6191 9.059260 CAGGGAAAACAATCAGAAAAATCAAAT 57.941 29.630 0.00 0.00 0.00 2.32
6090 6230 2.231235 GGTTGAAGGCAATACAACAGGG 59.769 50.000 0.00 0.00 43.51 4.45
6492 6632 0.731514 CATGCAGCAAGCCTTTGTCG 60.732 55.000 0.00 0.00 44.83 4.35
6501 6641 2.223876 ACCAAAGAACACATGCAGCAAG 60.224 45.455 0.00 0.00 0.00 4.01
6503 6643 1.067364 CACCAAAGAACACATGCAGCA 59.933 47.619 0.00 0.00 0.00 4.41
6513 6653 4.320608 TTTGCCATCTTCACCAAAGAAC 57.679 40.909 0.00 0.00 46.85 3.01
6543 6683 7.422878 AGATTTTACCTCAAGAAAACTCGTC 57.577 36.000 0.00 0.00 0.00 4.20
6573 6713 7.454260 ACCGCAGAGAAGAAAAGATTTATTT 57.546 32.000 0.00 0.00 0.00 1.40
6575 6715 7.331791 ACTACCGCAGAGAAGAAAAGATTTAT 58.668 34.615 0.00 0.00 0.00 1.40
6634 6774 0.827368 GGCCAACAGACCAAAACCAA 59.173 50.000 0.00 0.00 0.00 3.67
6635 6775 0.032615 AGGCCAACAGACCAAAACCA 60.033 50.000 5.01 0.00 0.00 3.67
6636 6776 1.119684 AAGGCCAACAGACCAAAACC 58.880 50.000 5.01 0.00 0.00 3.27
6637 6777 2.296190 CCTAAGGCCAACAGACCAAAAC 59.704 50.000 5.01 0.00 0.00 2.43
6672 6816 3.000819 TACCCACTCGCCACAGGG 61.001 66.667 0.00 0.00 46.96 4.45
6686 6830 7.339976 AGAAGGATATAATAGCGGAAGAGTACC 59.660 40.741 0.00 0.00 0.00 3.34
7282 7426 9.836864 AGAAGTATTTTCATGTGCTATGACATA 57.163 29.630 4.08 0.00 34.69 2.29
7305 7449 8.906867 ACTCATCAAATCAGAAAGAAACAAGAA 58.093 29.630 0.00 0.00 0.00 2.52
7318 7462 6.092670 ACCGTCATGTTTACTCATCAAATCAG 59.907 38.462 0.00 0.00 0.00 2.90
7327 7471 5.502706 CGTCAAAAACCGTCATGTTTACTCA 60.503 40.000 0.00 0.00 37.46 3.41
7342 7486 3.626028 ATTGTCTCTGCCGTCAAAAAC 57.374 42.857 0.00 0.00 0.00 2.43
7385 7529 9.378551 CAATTAGTGTACCTTAGCTCATGTAAA 57.621 33.333 0.00 0.00 0.00 2.01
7398 7542 4.622220 CGCACCTTACCAATTAGTGTACCT 60.622 45.833 0.00 0.00 0.00 3.08
7403 7547 1.400494 GCCGCACCTTACCAATTAGTG 59.600 52.381 0.00 0.00 0.00 2.74
7436 7580 8.700722 TTGTTATATAAGTTTGCTTTGCATGG 57.299 30.769 0.00 0.00 38.76 3.66
7468 7626 7.787725 GAAACCTACCAGTTTCGATCATATT 57.212 36.000 1.78 0.00 44.35 1.28
7494 7652 9.645059 TTATTTTATTTTTGCATCGATTGGTCA 57.355 25.926 0.00 0.00 0.00 4.02
7522 7680 7.881775 ACAAGTTGGAAAACTCTTGTCTAAT 57.118 32.000 7.96 0.00 44.36 1.73
7523 7681 7.175990 ACAACAAGTTGGAAAACTCTTGTCTAA 59.824 33.333 16.45 0.00 46.06 2.10
7524 7682 6.657541 ACAACAAGTTGGAAAACTCTTGTCTA 59.342 34.615 16.45 0.00 46.06 2.59
7525 7683 5.476945 ACAACAAGTTGGAAAACTCTTGTCT 59.523 36.000 16.45 0.01 46.06 3.41
7526 7684 5.709966 ACAACAAGTTGGAAAACTCTTGTC 58.290 37.500 16.45 0.00 46.06 3.18
7550 7708 6.306397 GTTGGCACTCTTTTGTTTTCTTTTG 58.694 36.000 0.00 0.00 0.00 2.44
7555 7713 3.507786 ACGTTGGCACTCTTTTGTTTTC 58.492 40.909 0.00 0.00 0.00 2.29
7579 7739 0.814010 GGTCGGAAATCCCCATCGTG 60.814 60.000 0.00 0.00 0.00 4.35
7608 7805 7.230108 ACATTGGATAGCAGAATGTATTTGGAG 59.770 37.037 5.96 0.00 38.29 3.86
7611 7808 9.836076 CATACATTGGATAGCAGAATGTATTTG 57.164 33.333 18.09 10.65 44.94 2.32
7612 7809 9.578576 ACATACATTGGATAGCAGAATGTATTT 57.421 29.630 18.09 12.79 44.94 1.40
7621 7818 6.870965 GTCCTCTTACATACATTGGATAGCAG 59.129 42.308 0.00 0.00 0.00 4.24
7631 7828 2.963782 GGACCGGTCCTCTTACATACAT 59.036 50.000 40.89 0.00 46.16 2.29
7690 7908 0.905357 CGGACTCCTCCAAACATCCT 59.095 55.000 0.00 0.00 36.12 3.24
7694 7912 0.613260 CATCCGGACTCCTCCAAACA 59.387 55.000 6.12 0.00 36.12 2.83
7721 9219 0.464036 AGCTGTGTCAAAGTCCGACA 59.536 50.000 0.40 0.00 41.00 4.35
7876 9380 2.925706 TACAAGGCGCCTGGGTGA 60.926 61.111 33.93 16.55 0.00 4.02
7946 9450 1.153647 GCCATGGATGACGTCGACA 60.154 57.895 18.40 9.96 0.00 4.35
7948 9452 0.036858 TTTGCCATGGATGACGTCGA 60.037 50.000 18.40 0.26 0.00 4.20
7976 9482 0.462225 TTTGGCCGAACACTTGTCGA 60.462 50.000 0.00 0.00 0.00 4.20
8063 9569 0.036010 CAACAATGCGTCCTCCCTCT 60.036 55.000 0.00 0.00 0.00 3.69
8108 9614 2.292016 TGTTTCATGCCTACAAACCACG 59.708 45.455 4.94 0.00 30.32 4.94
8110 9616 5.127845 TCTTTTGTTTCATGCCTACAAACCA 59.872 36.000 15.02 6.37 40.36 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.