Multiple sequence alignment - TraesCS4D01G166600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G166600 chr4D 100.000 3409 0 0 1 3409 282073725 282077133 0.000000e+00 6296
1 TraesCS4D01G166600 chr4D 93.308 3168 101 42 300 3409 442428616 442425502 0.000000e+00 4573
2 TraesCS4D01G166600 chr4D 96.620 2574 62 14 836 3409 472678050 472675502 0.000000e+00 4248
3 TraesCS4D01G166600 chr4D 97.353 2493 51 9 917 3409 17337637 17335160 0.000000e+00 4224
4 TraesCS4D01G166600 chr4D 99.349 307 1 1 3 308 245479549 245479243 3.840000e-154 555
5 TraesCS4D01G166600 chr4D 88.630 343 19 12 304 642 208393826 208393500 1.910000e-107 399
6 TraesCS4D01G166600 chr4D 82.061 262 29 12 591 842 282074244 282074497 1.240000e-49 207
7 TraesCS4D01G166600 chr4D 84.153 183 21 6 662 842 282074249 282074425 1.630000e-38 171
8 TraesCS4D01G166600 chr4D 84.153 183 21 6 525 701 282074386 282074566 1.630000e-38 171
9 TraesCS4D01G166600 chr2D 94.846 3124 82 39 305 3409 421811825 421808762 0.000000e+00 4804
10 TraesCS4D01G166600 chr2D 86.341 410 28 20 305 704 260026431 260026040 4.070000e-114 422
11 TraesCS4D01G166600 chr2D 91.216 296 17 7 305 599 62399568 62399281 8.870000e-106 394
12 TraesCS4D01G166600 chr2D 90.909 286 20 5 289 574 157119197 157119476 2.480000e-101 379
13 TraesCS4D01G166600 chr1D 94.547 3136 82 52 304 3409 103259343 103256267 0.000000e+00 4761
14 TraesCS4D01G166600 chr1D 95.377 2574 91 13 836 3409 44620737 44618192 0.000000e+00 4069
15 TraesCS4D01G166600 chr1D 92.419 277 15 5 298 574 485036648 485036378 1.150000e-104 390
16 TraesCS4D01G166600 chr1D 85.049 408 29 17 305 712 292665710 292665335 1.480000e-103 387
17 TraesCS4D01G166600 chr3D 94.302 2931 74 52 506 3409 330285265 330282401 0.000000e+00 4401
18 TraesCS4D01G166600 chr3D 97.551 2491 43 10 919 3409 199108298 199105826 0.000000e+00 4246
19 TraesCS4D01G166600 chr3D 94.007 267 10 3 305 571 239610678 239610418 1.910000e-107 399
20 TraesCS4D01G166600 chr3D 83.333 450 43 23 305 743 196968646 196968218 1.480000e-103 387
21 TraesCS4D01G166600 chr7D 94.546 2842 91 35 591 3409 312561386 312558586 0.000000e+00 4331
22 TraesCS4D01G166600 chr7D 89.736 341 16 11 305 642 378163856 378164180 5.260000e-113 418
23 TraesCS4D01G166600 chr7D 83.478 115 14 3 665 779 312561378 312561269 6.020000e-18 102
24 TraesCS4D01G166600 chr6D 94.174 2832 98 39 591 3409 24400452 24397675 0.000000e+00 4253
25 TraesCS4D01G166600 chr6D 96.881 1571 34 1 1839 3409 24340097 24341652 0.000000e+00 2615
26 TraesCS4D01G166600 chr5D 96.157 2602 60 15 830 3409 876986 874403 0.000000e+00 4215
27 TraesCS4D01G166600 chr4B 96.764 309 8 2 1 308 345264541 345264848 6.520000e-142 514
28 TraesCS4D01G166600 chr4A 94.498 309 14 2 1 308 274735044 274735350 1.110000e-129 473


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G166600 chr4D 282073725 282077133 3408 False 1711.25 6296 87.59175 1 3409 4 chr4D.!!$F1 3408
1 TraesCS4D01G166600 chr4D 442425502 442428616 3114 True 4573.00 4573 93.30800 300 3409 1 chr4D.!!$R4 3109
2 TraesCS4D01G166600 chr4D 472675502 472678050 2548 True 4248.00 4248 96.62000 836 3409 1 chr4D.!!$R5 2573
3 TraesCS4D01G166600 chr4D 17335160 17337637 2477 True 4224.00 4224 97.35300 917 3409 1 chr4D.!!$R1 2492
4 TraesCS4D01G166600 chr2D 421808762 421811825 3063 True 4804.00 4804 94.84600 305 3409 1 chr2D.!!$R3 3104
5 TraesCS4D01G166600 chr1D 103256267 103259343 3076 True 4761.00 4761 94.54700 304 3409 1 chr1D.!!$R2 3105
6 TraesCS4D01G166600 chr1D 44618192 44620737 2545 True 4069.00 4069 95.37700 836 3409 1 chr1D.!!$R1 2573
7 TraesCS4D01G166600 chr3D 330282401 330285265 2864 True 4401.00 4401 94.30200 506 3409 1 chr3D.!!$R4 2903
8 TraesCS4D01G166600 chr3D 199105826 199108298 2472 True 4246.00 4246 97.55100 919 3409 1 chr3D.!!$R2 2490
9 TraesCS4D01G166600 chr7D 312558586 312561386 2800 True 2216.50 4331 89.01200 591 3409 2 chr7D.!!$R1 2818
10 TraesCS4D01G166600 chr6D 24397675 24400452 2777 True 4253.00 4253 94.17400 591 3409 1 chr6D.!!$R1 2818
11 TraesCS4D01G166600 chr6D 24340097 24341652 1555 False 2615.00 2615 96.88100 1839 3409 1 chr6D.!!$F1 1570
12 TraesCS4D01G166600 chr5D 874403 876986 2583 True 4215.00 4215 96.15700 830 3409 1 chr5D.!!$R1 2579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.251916 TGCACCCCCAGAACTTATCG 59.748 55.0 0.0 0.0 0.0 2.92 F
1525 2013 0.105964 TGCTGGTTGTCGTACTTGCT 59.894 50.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 2182 0.825010 AACCTCCAGCAAACCAGCAG 60.825 55.0 0.0 0.0 36.85 4.24 R
3016 3507 0.035317 AGAAGGTGACGATGCTTGCA 59.965 50.0 0.0 0.0 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.473643 CGGAAACCACCTTCTGCA 57.526 55.556 0.00 0.00 0.00 4.41
18 19 2.714259 CGGAAACCACCTTCTGCAA 58.286 52.632 0.00 0.00 0.00 4.08
19 20 1.247567 CGGAAACCACCTTCTGCAAT 58.752 50.000 0.00 0.00 0.00 3.56
20 21 1.613437 CGGAAACCACCTTCTGCAATT 59.387 47.619 0.00 0.00 0.00 2.32
21 22 2.351738 CGGAAACCACCTTCTGCAATTC 60.352 50.000 0.00 0.00 0.00 2.17
22 23 2.627699 GGAAACCACCTTCTGCAATTCA 59.372 45.455 0.00 0.00 0.00 2.57
23 24 3.069443 GGAAACCACCTTCTGCAATTCAA 59.931 43.478 0.00 0.00 0.00 2.69
24 25 3.733443 AACCACCTTCTGCAATTCAAC 57.267 42.857 0.00 0.00 0.00 3.18
25 26 2.949447 ACCACCTTCTGCAATTCAACT 58.051 42.857 0.00 0.00 0.00 3.16
26 27 3.299503 ACCACCTTCTGCAATTCAACTT 58.700 40.909 0.00 0.00 0.00 2.66
27 28 3.706086 ACCACCTTCTGCAATTCAACTTT 59.294 39.130 0.00 0.00 0.00 2.66
28 29 4.162131 ACCACCTTCTGCAATTCAACTTTT 59.838 37.500 0.00 0.00 0.00 2.27
29 30 4.508861 CCACCTTCTGCAATTCAACTTTTG 59.491 41.667 0.00 0.00 0.00 2.44
30 31 4.025480 CACCTTCTGCAATTCAACTTTTGC 60.025 41.667 0.88 0.88 46.53 3.68
31 32 3.495753 CCTTCTGCAATTCAACTTTTGCC 59.504 43.478 5.30 0.00 45.94 4.52
32 33 4.374399 CTTCTGCAATTCAACTTTTGCCT 58.626 39.130 5.30 0.00 45.94 4.75
33 34 3.981211 TCTGCAATTCAACTTTTGCCTC 58.019 40.909 5.30 0.00 45.94 4.70
34 35 3.638160 TCTGCAATTCAACTTTTGCCTCT 59.362 39.130 5.30 0.00 45.94 3.69
35 36 4.826733 TCTGCAATTCAACTTTTGCCTCTA 59.173 37.500 5.30 0.00 45.94 2.43
36 37 5.301551 TCTGCAATTCAACTTTTGCCTCTAA 59.698 36.000 5.30 0.00 45.94 2.10
37 38 6.015180 TCTGCAATTCAACTTTTGCCTCTAAT 60.015 34.615 5.30 0.00 45.94 1.73
38 39 7.176515 TCTGCAATTCAACTTTTGCCTCTAATA 59.823 33.333 5.30 0.00 45.94 0.98
39 40 7.090173 TGCAATTCAACTTTTGCCTCTAATAC 58.910 34.615 5.30 0.00 45.94 1.89
40 41 7.039784 TGCAATTCAACTTTTGCCTCTAATACT 60.040 33.333 5.30 0.00 45.94 2.12
41 42 7.814587 GCAATTCAACTTTTGCCTCTAATACTT 59.185 33.333 0.00 0.00 41.82 2.24
42 43 9.696917 CAATTCAACTTTTGCCTCTAATACTTT 57.303 29.630 0.00 0.00 0.00 2.66
43 44 9.696917 AATTCAACTTTTGCCTCTAATACTTTG 57.303 29.630 0.00 0.00 0.00 2.77
44 45 6.677913 TCAACTTTTGCCTCTAATACTTTGC 58.322 36.000 0.00 0.00 0.00 3.68
45 46 5.296813 ACTTTTGCCTCTAATACTTTGCG 57.703 39.130 0.00 0.00 0.00 4.85
46 47 4.156008 ACTTTTGCCTCTAATACTTTGCGG 59.844 41.667 0.00 0.00 0.00 5.69
47 48 3.343941 TTGCCTCTAATACTTTGCGGT 57.656 42.857 0.00 0.00 0.00 5.68
48 49 2.627945 TGCCTCTAATACTTTGCGGTG 58.372 47.619 0.00 0.00 0.00 4.94
49 50 1.940613 GCCTCTAATACTTTGCGGTGG 59.059 52.381 0.00 0.00 0.00 4.61
50 51 2.419574 GCCTCTAATACTTTGCGGTGGA 60.420 50.000 0.00 0.00 0.00 4.02
51 52 3.744530 GCCTCTAATACTTTGCGGTGGAT 60.745 47.826 0.00 0.00 0.00 3.41
52 53 4.502604 GCCTCTAATACTTTGCGGTGGATA 60.503 45.833 0.00 0.00 0.00 2.59
53 54 5.607477 CCTCTAATACTTTGCGGTGGATAA 58.393 41.667 0.00 0.00 0.00 1.75
54 55 5.696724 CCTCTAATACTTTGCGGTGGATAAG 59.303 44.000 0.00 0.00 0.00 1.73
55 56 5.607477 TCTAATACTTTGCGGTGGATAAGG 58.393 41.667 0.00 0.00 0.00 2.69
56 57 2.032680 TACTTTGCGGTGGATAAGGC 57.967 50.000 0.00 0.00 0.00 4.35
57 58 1.024579 ACTTTGCGGTGGATAAGGCG 61.025 55.000 0.00 0.00 0.00 5.52
58 59 1.714899 CTTTGCGGTGGATAAGGCGG 61.715 60.000 0.00 0.00 0.00 6.13
59 60 2.472414 TTTGCGGTGGATAAGGCGGT 62.472 55.000 0.00 0.00 0.00 5.68
60 61 2.124860 GCGGTGGATAAGGCGGTT 60.125 61.111 0.00 0.00 0.00 4.44
61 62 1.747745 GCGGTGGATAAGGCGGTTT 60.748 57.895 0.00 0.00 0.00 3.27
62 63 1.310216 GCGGTGGATAAGGCGGTTTT 61.310 55.000 0.00 0.00 0.00 2.43
63 64 2.013058 GCGGTGGATAAGGCGGTTTTA 61.013 52.381 0.00 0.00 0.00 1.52
64 65 2.567985 CGGTGGATAAGGCGGTTTTAT 58.432 47.619 0.00 0.00 0.00 1.40
65 66 2.546789 CGGTGGATAAGGCGGTTTTATC 59.453 50.000 5.57 5.57 36.99 1.75
66 67 3.743269 CGGTGGATAAGGCGGTTTTATCT 60.743 47.826 10.98 0.00 37.56 1.98
67 68 4.501915 CGGTGGATAAGGCGGTTTTATCTA 60.502 45.833 10.98 5.26 37.56 1.98
68 69 5.557866 GGTGGATAAGGCGGTTTTATCTAT 58.442 41.667 10.98 0.00 37.56 1.98
69 70 5.642491 GGTGGATAAGGCGGTTTTATCTATC 59.358 44.000 10.98 4.92 37.56 2.08
70 71 5.642491 GTGGATAAGGCGGTTTTATCTATCC 59.358 44.000 10.98 0.00 37.56 2.59
71 72 5.308497 TGGATAAGGCGGTTTTATCTATCCA 59.692 40.000 4.22 4.22 38.71 3.41
72 73 6.012858 TGGATAAGGCGGTTTTATCTATCCAT 60.013 38.462 4.22 0.00 36.86 3.41
73 74 7.181305 TGGATAAGGCGGTTTTATCTATCCATA 59.819 37.037 4.22 0.00 36.86 2.74
74 75 8.044908 GGATAAGGCGGTTTTATCTATCCATAA 58.955 37.037 10.98 0.00 37.56 1.90
75 76 9.099454 GATAAGGCGGTTTTATCTATCCATAAG 57.901 37.037 6.46 0.00 35.57 1.73
76 77 6.435292 AGGCGGTTTTATCTATCCATAAGT 57.565 37.500 0.00 0.00 0.00 2.24
77 78 6.838382 AGGCGGTTTTATCTATCCATAAGTT 58.162 36.000 0.00 0.00 0.00 2.66
78 79 7.970102 AGGCGGTTTTATCTATCCATAAGTTA 58.030 34.615 0.00 0.00 0.00 2.24
79 80 7.876582 AGGCGGTTTTATCTATCCATAAGTTAC 59.123 37.037 0.00 0.00 0.00 2.50
80 81 7.876582 GGCGGTTTTATCTATCCATAAGTTACT 59.123 37.037 0.00 0.00 0.00 2.24
81 82 9.269453 GCGGTTTTATCTATCCATAAGTTACTT 57.731 33.333 2.32 2.32 0.00 2.24
86 87 9.998106 TTTATCTATCCATAAGTTACTTCCTGC 57.002 33.333 0.00 0.00 0.00 4.85
87 88 7.618019 ATCTATCCATAAGTTACTTCCTGCA 57.382 36.000 0.00 0.00 0.00 4.41
88 89 6.817184 TCTATCCATAAGTTACTTCCTGCAC 58.183 40.000 0.00 0.00 0.00 4.57
89 90 4.216411 TCCATAAGTTACTTCCTGCACC 57.784 45.455 0.00 0.00 0.00 5.01
90 91 3.054655 TCCATAAGTTACTTCCTGCACCC 60.055 47.826 0.00 0.00 0.00 4.61
91 92 3.279434 CATAAGTTACTTCCTGCACCCC 58.721 50.000 0.00 0.00 0.00 4.95
92 93 0.404426 AAGTTACTTCCTGCACCCCC 59.596 55.000 0.00 0.00 0.00 5.40
93 94 0.770557 AGTTACTTCCTGCACCCCCA 60.771 55.000 0.00 0.00 0.00 4.96
94 95 0.322546 GTTACTTCCTGCACCCCCAG 60.323 60.000 0.00 0.00 0.00 4.45
95 96 0.474854 TTACTTCCTGCACCCCCAGA 60.475 55.000 0.00 0.00 34.77 3.86
96 97 0.474854 TACTTCCTGCACCCCCAGAA 60.475 55.000 0.00 0.00 34.77 3.02
97 98 1.303643 CTTCCTGCACCCCCAGAAC 60.304 63.158 0.00 0.00 34.77 3.01
98 99 1.774217 TTCCTGCACCCCCAGAACT 60.774 57.895 0.00 0.00 34.77 3.01
99 100 1.360393 TTCCTGCACCCCCAGAACTT 61.360 55.000 0.00 0.00 34.77 2.66
100 101 0.474854 TCCTGCACCCCCAGAACTTA 60.475 55.000 0.00 0.00 34.77 2.24
101 102 0.625849 CCTGCACCCCCAGAACTTAT 59.374 55.000 0.00 0.00 34.77 1.73
102 103 1.408822 CCTGCACCCCCAGAACTTATC 60.409 57.143 0.00 0.00 34.77 1.75
103 104 0.251916 TGCACCCCCAGAACTTATCG 59.748 55.000 0.00 0.00 0.00 2.92
104 105 0.539986 GCACCCCCAGAACTTATCGA 59.460 55.000 0.00 0.00 0.00 3.59
105 106 1.141053 GCACCCCCAGAACTTATCGAT 59.859 52.381 2.16 2.16 0.00 3.59
106 107 2.367567 GCACCCCCAGAACTTATCGATA 59.632 50.000 0.00 0.00 0.00 2.92
107 108 3.181458 GCACCCCCAGAACTTATCGATAA 60.181 47.826 16.69 16.69 0.00 1.75
108 109 4.632153 CACCCCCAGAACTTATCGATAAG 58.368 47.826 33.51 33.51 44.07 1.73
109 110 3.071167 ACCCCCAGAACTTATCGATAAGC 59.929 47.826 34.56 23.37 42.66 3.09
110 111 3.557264 CCCCCAGAACTTATCGATAAGCC 60.557 52.174 34.56 27.45 42.66 4.35
111 112 3.325135 CCCCAGAACTTATCGATAAGCCT 59.675 47.826 34.56 28.77 42.66 4.58
112 113 4.561105 CCCAGAACTTATCGATAAGCCTC 58.439 47.826 34.56 29.85 42.66 4.70
113 114 4.039245 CCCAGAACTTATCGATAAGCCTCA 59.961 45.833 34.56 8.35 42.66 3.86
114 115 5.453339 CCCAGAACTTATCGATAAGCCTCAA 60.453 44.000 34.56 9.34 42.66 3.02
115 116 6.049149 CCAGAACTTATCGATAAGCCTCAAA 58.951 40.000 34.56 8.66 42.66 2.69
116 117 6.201806 CCAGAACTTATCGATAAGCCTCAAAG 59.798 42.308 34.56 24.19 42.66 2.77
117 118 6.980978 CAGAACTTATCGATAAGCCTCAAAGA 59.019 38.462 34.56 5.66 42.66 2.52
118 119 7.492669 CAGAACTTATCGATAAGCCTCAAAGAA 59.507 37.037 34.56 6.84 42.66 2.52
119 120 8.041323 AGAACTTATCGATAAGCCTCAAAGAAA 58.959 33.333 34.56 6.65 42.66 2.52
120 121 8.561738 AACTTATCGATAAGCCTCAAAGAAAA 57.438 30.769 34.56 6.25 42.66 2.29
121 122 8.738645 ACTTATCGATAAGCCTCAAAGAAAAT 57.261 30.769 34.56 15.06 42.66 1.82
122 123 8.616076 ACTTATCGATAAGCCTCAAAGAAAATG 58.384 33.333 34.56 14.25 42.66 2.32
123 124 8.506168 TTATCGATAAGCCTCAAAGAAAATGT 57.494 30.769 13.85 0.00 0.00 2.71
124 125 6.182039 TCGATAAGCCTCAAAGAAAATGTG 57.818 37.500 0.00 0.00 0.00 3.21
125 126 4.795278 CGATAAGCCTCAAAGAAAATGTGC 59.205 41.667 0.00 0.00 0.00 4.57
126 127 5.619757 CGATAAGCCTCAAAGAAAATGTGCA 60.620 40.000 0.00 0.00 0.00 4.57
127 128 4.612264 AAGCCTCAAAGAAAATGTGCAT 57.388 36.364 0.00 0.00 0.00 3.96
128 129 4.612264 AGCCTCAAAGAAAATGTGCATT 57.388 36.364 0.00 0.00 0.00 3.56
129 130 4.964593 AGCCTCAAAGAAAATGTGCATTT 58.035 34.783 4.48 4.48 42.35 2.32
142 143 8.947055 AAAATGTGCATTTTCAGTCTACTTTT 57.053 26.923 14.88 0.00 44.98 2.27
143 144 7.935338 AATGTGCATTTTCAGTCTACTTTTG 57.065 32.000 0.00 0.00 0.00 2.44
144 145 6.449635 TGTGCATTTTCAGTCTACTTTTGT 57.550 33.333 0.00 0.00 0.00 2.83
145 146 6.862209 TGTGCATTTTCAGTCTACTTTTGTT 58.138 32.000 0.00 0.00 0.00 2.83
146 147 6.972328 TGTGCATTTTCAGTCTACTTTTGTTC 59.028 34.615 0.00 0.00 0.00 3.18
147 148 6.972328 GTGCATTTTCAGTCTACTTTTGTTCA 59.028 34.615 0.00 0.00 0.00 3.18
148 149 7.487829 GTGCATTTTCAGTCTACTTTTGTTCAA 59.512 33.333 0.00 0.00 0.00 2.69
149 150 8.196771 TGCATTTTCAGTCTACTTTTGTTCAAT 58.803 29.630 0.00 0.00 0.00 2.57
150 151 8.482429 GCATTTTCAGTCTACTTTTGTTCAATG 58.518 33.333 0.00 0.00 0.00 2.82
151 152 9.734620 CATTTTCAGTCTACTTTTGTTCAATGA 57.265 29.630 0.00 0.00 0.00 2.57
153 154 9.787532 TTTTCAGTCTACTTTTGTTCAATGAAG 57.212 29.630 0.00 0.00 32.44 3.02
154 155 8.506168 TTCAGTCTACTTTTGTTCAATGAAGT 57.494 30.769 0.00 7.47 36.42 3.01
155 156 8.506168 TCAGTCTACTTTTGTTCAATGAAGTT 57.494 30.769 0.00 0.00 34.46 2.66
156 157 8.612619 TCAGTCTACTTTTGTTCAATGAAGTTC 58.387 33.333 0.00 0.00 34.46 3.01
157 158 8.397906 CAGTCTACTTTTGTTCAATGAAGTTCA 58.602 33.333 8.27 8.27 34.46 3.18
158 159 8.616076 AGTCTACTTTTGTTCAATGAAGTTCAG 58.384 33.333 11.91 0.00 34.46 3.02
159 160 7.857885 GTCTACTTTTGTTCAATGAAGTTCAGG 59.142 37.037 11.91 6.37 34.46 3.86
160 161 6.773976 ACTTTTGTTCAATGAAGTTCAGGA 57.226 33.333 11.91 8.64 0.00 3.86
161 162 7.352079 ACTTTTGTTCAATGAAGTTCAGGAT 57.648 32.000 11.91 0.00 0.00 3.24
162 163 8.463930 ACTTTTGTTCAATGAAGTTCAGGATA 57.536 30.769 11.91 2.15 0.00 2.59
163 164 8.912988 ACTTTTGTTCAATGAAGTTCAGGATAA 58.087 29.630 11.91 7.35 0.00 1.75
164 165 9.918630 CTTTTGTTCAATGAAGTTCAGGATAAT 57.081 29.630 11.91 0.00 0.00 1.28
165 166 9.912634 TTTTGTTCAATGAAGTTCAGGATAATC 57.087 29.630 11.91 4.36 0.00 1.75
166 167 8.634335 TTGTTCAATGAAGTTCAGGATAATCA 57.366 30.769 11.91 6.40 0.00 2.57
167 168 8.634335 TGTTCAATGAAGTTCAGGATAATCAA 57.366 30.769 11.91 0.00 0.00 2.57
168 169 9.246670 TGTTCAATGAAGTTCAGGATAATCAAT 57.753 29.630 11.91 0.00 0.00 2.57
184 185 8.635765 GATAATCAATTATCCCAAGGCTAACA 57.364 34.615 10.41 0.00 41.62 2.41
185 186 9.077885 GATAATCAATTATCCCAAGGCTAACAA 57.922 33.333 10.41 0.00 41.62 2.83
186 187 7.919385 AATCAATTATCCCAAGGCTAACAAT 57.081 32.000 0.00 0.00 0.00 2.71
187 188 6.959639 TCAATTATCCCAAGGCTAACAATC 57.040 37.500 0.00 0.00 0.00 2.67
188 189 6.430864 TCAATTATCCCAAGGCTAACAATCA 58.569 36.000 0.00 0.00 0.00 2.57
189 190 6.547141 TCAATTATCCCAAGGCTAACAATCAG 59.453 38.462 0.00 0.00 0.00 2.90
190 191 2.806945 TCCCAAGGCTAACAATCAGG 57.193 50.000 0.00 0.00 0.00 3.86
191 192 1.284785 TCCCAAGGCTAACAATCAGGG 59.715 52.381 0.00 0.00 36.38 4.45
192 193 1.005924 CCCAAGGCTAACAATCAGGGT 59.994 52.381 0.00 0.00 0.00 4.34
193 194 2.369394 CCAAGGCTAACAATCAGGGTC 58.631 52.381 0.00 0.00 0.00 4.46
194 195 2.290896 CCAAGGCTAACAATCAGGGTCA 60.291 50.000 0.00 0.00 0.00 4.02
195 196 3.624777 CAAGGCTAACAATCAGGGTCAT 58.375 45.455 0.00 0.00 0.00 3.06
196 197 4.385199 CCAAGGCTAACAATCAGGGTCATA 60.385 45.833 0.00 0.00 0.00 2.15
197 198 5.380043 CAAGGCTAACAATCAGGGTCATAT 58.620 41.667 0.00 0.00 0.00 1.78
198 199 6.465751 CCAAGGCTAACAATCAGGGTCATATA 60.466 42.308 0.00 0.00 0.00 0.86
199 200 6.763715 AGGCTAACAATCAGGGTCATATAA 57.236 37.500 0.00 0.00 0.00 0.98
200 201 6.534634 AGGCTAACAATCAGGGTCATATAAC 58.465 40.000 0.00 0.00 0.00 1.89
201 202 6.101150 AGGCTAACAATCAGGGTCATATAACA 59.899 38.462 0.00 0.00 0.00 2.41
202 203 6.770785 GGCTAACAATCAGGGTCATATAACAA 59.229 38.462 0.00 0.00 0.00 2.83
203 204 7.448469 GGCTAACAATCAGGGTCATATAACAAT 59.552 37.037 0.00 0.00 0.00 2.71
204 205 8.850156 GCTAACAATCAGGGTCATATAACAATT 58.150 33.333 0.00 0.00 0.00 2.32
206 207 8.593945 AACAATCAGGGTCATATAACAATTGT 57.406 30.769 4.92 4.92 36.63 2.71
207 208 8.593945 ACAATCAGGGTCATATAACAATTGTT 57.406 30.769 25.99 25.99 41.73 2.83
208 209 8.686334 ACAATCAGGGTCATATAACAATTGTTC 58.314 33.333 26.46 11.47 39.31 3.18
209 210 7.823745 ATCAGGGTCATATAACAATTGTTCC 57.176 36.000 26.46 19.09 39.31 3.62
210 211 6.726379 TCAGGGTCATATAACAATTGTTCCA 58.274 36.000 26.46 15.82 39.31 3.53
211 212 7.353525 TCAGGGTCATATAACAATTGTTCCAT 58.646 34.615 26.46 17.60 39.31 3.41
212 213 7.285172 TCAGGGTCATATAACAATTGTTCCATG 59.715 37.037 26.46 25.70 39.31 3.66
213 214 6.040842 AGGGTCATATAACAATTGTTCCATGC 59.959 38.462 26.46 21.17 39.31 4.06
214 215 6.215845 GGTCATATAACAATTGTTCCATGCC 58.784 40.000 26.46 24.54 39.31 4.40
215 216 6.040842 GGTCATATAACAATTGTTCCATGCCT 59.959 38.462 26.46 3.73 39.31 4.75
216 217 7.230510 GGTCATATAACAATTGTTCCATGCCTA 59.769 37.037 26.46 12.19 39.31 3.93
217 218 8.796475 GTCATATAACAATTGTTCCATGCCTAT 58.204 33.333 26.46 14.25 39.31 2.57
218 219 8.795513 TCATATAACAATTGTTCCATGCCTATG 58.204 33.333 26.46 19.05 39.31 2.23
219 220 8.579006 CATATAACAATTGTTCCATGCCTATGT 58.421 33.333 26.46 8.25 39.31 2.29
220 221 4.724074 ACAATTGTTCCATGCCTATGTG 57.276 40.909 4.92 0.00 32.21 3.21
221 222 4.343231 ACAATTGTTCCATGCCTATGTGA 58.657 39.130 4.92 0.00 32.21 3.58
222 223 4.771577 ACAATTGTTCCATGCCTATGTGAA 59.228 37.500 4.92 0.00 32.21 3.18
223 224 5.105635 ACAATTGTTCCATGCCTATGTGAAG 60.106 40.000 4.92 0.00 32.21 3.02
224 225 3.998913 TGTTCCATGCCTATGTGAAGA 57.001 42.857 0.00 0.00 32.21 2.87
225 226 4.508551 TGTTCCATGCCTATGTGAAGAT 57.491 40.909 0.00 0.00 32.21 2.40
226 227 4.858850 TGTTCCATGCCTATGTGAAGATT 58.141 39.130 0.00 0.00 32.21 2.40
227 228 6.000246 TGTTCCATGCCTATGTGAAGATTA 58.000 37.500 0.00 0.00 32.21 1.75
228 229 6.422333 TGTTCCATGCCTATGTGAAGATTAA 58.578 36.000 0.00 0.00 32.21 1.40
229 230 6.889177 TGTTCCATGCCTATGTGAAGATTAAA 59.111 34.615 0.00 0.00 32.21 1.52
230 231 7.560991 TGTTCCATGCCTATGTGAAGATTAAAT 59.439 33.333 0.00 0.00 32.21 1.40
231 232 8.416329 GTTCCATGCCTATGTGAAGATTAAATT 58.584 33.333 0.00 0.00 32.21 1.82
232 233 7.944061 TCCATGCCTATGTGAAGATTAAATTG 58.056 34.615 0.00 0.00 32.21 2.32
233 234 6.643770 CCATGCCTATGTGAAGATTAAATTGC 59.356 38.462 0.00 0.00 32.21 3.56
234 235 6.147864 TGCCTATGTGAAGATTAAATTGCC 57.852 37.500 0.00 0.00 0.00 4.52
235 236 5.655974 TGCCTATGTGAAGATTAAATTGCCA 59.344 36.000 0.00 0.00 0.00 4.92
236 237 5.979517 GCCTATGTGAAGATTAAATTGCCAC 59.020 40.000 0.00 0.00 0.00 5.01
237 238 6.507023 CCTATGTGAAGATTAAATTGCCACC 58.493 40.000 0.00 0.00 0.00 4.61
238 239 4.799564 TGTGAAGATTAAATTGCCACCC 57.200 40.909 0.00 0.00 0.00 4.61
239 240 4.415596 TGTGAAGATTAAATTGCCACCCT 58.584 39.130 0.00 0.00 0.00 4.34
240 241 5.575157 TGTGAAGATTAAATTGCCACCCTA 58.425 37.500 0.00 0.00 0.00 3.53
241 242 5.652014 TGTGAAGATTAAATTGCCACCCTAG 59.348 40.000 0.00 0.00 0.00 3.02
242 243 4.644685 TGAAGATTAAATTGCCACCCTAGC 59.355 41.667 0.00 0.00 0.00 3.42
243 244 4.526438 AGATTAAATTGCCACCCTAGCT 57.474 40.909 0.00 0.00 0.00 3.32
244 245 4.210331 AGATTAAATTGCCACCCTAGCTG 58.790 43.478 0.00 0.00 0.00 4.24
245 246 3.449746 TTAAATTGCCACCCTAGCTGT 57.550 42.857 0.00 0.00 0.00 4.40
246 247 2.309136 AAATTGCCACCCTAGCTGTT 57.691 45.000 0.00 0.00 0.00 3.16
247 248 2.309136 AATTGCCACCCTAGCTGTTT 57.691 45.000 0.00 0.00 0.00 2.83
248 249 2.309136 ATTGCCACCCTAGCTGTTTT 57.691 45.000 0.00 0.00 0.00 2.43
249 250 1.327303 TTGCCACCCTAGCTGTTTTG 58.673 50.000 0.00 0.00 0.00 2.44
250 251 0.476338 TGCCACCCTAGCTGTTTTGA 59.524 50.000 0.00 0.00 0.00 2.69
251 252 1.075374 TGCCACCCTAGCTGTTTTGAT 59.925 47.619 0.00 0.00 0.00 2.57
252 253 1.745653 GCCACCCTAGCTGTTTTGATC 59.254 52.381 0.00 0.00 0.00 2.92
253 254 2.009774 CCACCCTAGCTGTTTTGATCG 58.990 52.381 0.00 0.00 0.00 3.69
254 255 2.615493 CCACCCTAGCTGTTTTGATCGT 60.615 50.000 0.00 0.00 0.00 3.73
255 256 3.369052 CCACCCTAGCTGTTTTGATCGTA 60.369 47.826 0.00 0.00 0.00 3.43
256 257 4.442706 CACCCTAGCTGTTTTGATCGTAT 58.557 43.478 0.00 0.00 0.00 3.06
257 258 4.876107 CACCCTAGCTGTTTTGATCGTATT 59.124 41.667 0.00 0.00 0.00 1.89
258 259 5.006746 CACCCTAGCTGTTTTGATCGTATTC 59.993 44.000 0.00 0.00 0.00 1.75
259 260 4.209288 CCCTAGCTGTTTTGATCGTATTCG 59.791 45.833 0.00 0.00 38.55 3.34
260 261 4.209288 CCTAGCTGTTTTGATCGTATTCGG 59.791 45.833 0.00 0.00 37.69 4.30
261 262 2.936498 AGCTGTTTTGATCGTATTCGGG 59.064 45.455 0.00 0.00 37.69 5.14
262 263 2.031683 GCTGTTTTGATCGTATTCGGGG 59.968 50.000 0.00 0.00 37.69 5.73
263 264 3.527533 CTGTTTTGATCGTATTCGGGGA 58.472 45.455 0.00 0.00 37.69 4.81
264 265 3.936453 CTGTTTTGATCGTATTCGGGGAA 59.064 43.478 0.00 0.00 37.69 3.97
265 266 3.685756 TGTTTTGATCGTATTCGGGGAAC 59.314 43.478 0.00 0.00 37.69 3.62
283 284 5.231265 GGAACCCATTCGATTACAGAAAC 57.769 43.478 0.00 0.00 35.48 2.78
284 285 4.941873 GGAACCCATTCGATTACAGAAACT 59.058 41.667 0.00 0.00 35.48 2.66
285 286 5.163754 GGAACCCATTCGATTACAGAAACTG 60.164 44.000 0.00 0.00 35.48 3.16
286 287 3.689649 ACCCATTCGATTACAGAAACTGC 59.310 43.478 0.00 0.00 34.37 4.40
287 288 3.689161 CCCATTCGATTACAGAAACTGCA 59.311 43.478 0.00 0.00 34.37 4.41
288 289 4.336433 CCCATTCGATTACAGAAACTGCAT 59.664 41.667 0.00 0.00 34.37 3.96
289 290 5.268544 CCATTCGATTACAGAAACTGCATG 58.731 41.667 0.00 0.00 34.37 4.06
290 291 5.163723 CCATTCGATTACAGAAACTGCATGT 60.164 40.000 0.00 0.00 34.37 3.21
291 292 4.926860 TCGATTACAGAAACTGCATGTG 57.073 40.909 0.12 0.00 34.37 3.21
292 293 4.314961 TCGATTACAGAAACTGCATGTGT 58.685 39.130 0.12 0.00 34.37 3.72
293 294 4.754618 TCGATTACAGAAACTGCATGTGTT 59.245 37.500 0.12 0.00 34.37 3.32
294 295 4.847757 CGATTACAGAAACTGCATGTGTTG 59.152 41.667 0.12 0.00 34.37 3.33
388 389 3.111484 TCCTGCATATGTTCCACACCTA 58.889 45.455 4.29 0.00 0.00 3.08
706 1112 4.214327 CGAAGCTCCCTCCCGCTC 62.214 72.222 0.00 0.00 34.96 5.03
707 1113 4.214327 GAAGCTCCCTCCCGCTCG 62.214 72.222 0.00 0.00 34.96 5.03
708 1114 4.761058 AAGCTCCCTCCCGCTCGA 62.761 66.667 0.00 0.00 34.96 4.04
710 1116 4.214327 GCTCCCTCCCGCTCGAAG 62.214 72.222 0.00 0.00 0.00 3.79
711 1117 4.214327 CTCCCTCCCGCTCGAAGC 62.214 72.222 0.00 0.00 38.02 3.86
745 1151 4.214327 CGAAGCTCCCTCCCGCTC 62.214 72.222 0.00 0.00 34.96 5.03
746 1152 4.214327 GAAGCTCCCTCCCGCTCG 62.214 72.222 0.00 0.00 34.96 5.03
753 1159 4.504916 CCTCCCGCTCGCAGTCAG 62.505 72.222 0.00 0.00 0.00 3.51
764 1170 4.680237 CAGTCAGCCACCGCCGAA 62.680 66.667 0.00 0.00 34.57 4.30
765 1171 4.379243 AGTCAGCCACCGCCGAAG 62.379 66.667 0.00 0.00 34.57 3.79
772 1178 4.821589 CACCGCCGAAGCTCCCTC 62.822 72.222 0.00 0.00 36.60 4.30
778 1184 4.214327 CGAAGCTCCCTCCCGCTC 62.214 72.222 0.00 0.00 34.96 5.03
779 1185 4.214327 GAAGCTCCCTCCCGCTCG 62.214 72.222 0.00 0.00 34.96 5.03
780 1186 4.761058 AAGCTCCCTCCCGCTCGA 62.761 66.667 0.00 0.00 34.96 4.04
781 1187 4.761058 AGCTCCCTCCCGCTCGAA 62.761 66.667 0.00 0.00 0.00 3.71
782 1188 4.214327 GCTCCCTCCCGCTCGAAG 62.214 72.222 0.00 0.00 0.00 3.79
1525 2013 0.105964 TGCTGGTTGTCGTACTTGCT 59.894 50.000 0.00 0.00 0.00 3.91
1610 2098 0.323629 CGTAAGGAGTTTGAGCCCCA 59.676 55.000 0.00 0.00 0.00 4.96
1694 2182 1.507174 AGGAGACTCGCTTACGTGC 59.493 57.895 0.00 0.00 41.18 5.34
1759 2247 1.782201 TTCCACTCCACCTGCTGCAT 61.782 55.000 1.31 0.00 0.00 3.96
2159 2647 1.338107 TCCGCTTTGTCCTCTCTTCA 58.662 50.000 0.00 0.00 0.00 3.02
2240 2728 2.797177 AGAGGCAATCTTTCCACTCC 57.203 50.000 0.00 0.00 32.99 3.85
2241 2729 2.273619 AGAGGCAATCTTTCCACTCCT 58.726 47.619 0.00 0.00 32.99 3.69
2242 2730 2.238395 AGAGGCAATCTTTCCACTCCTC 59.762 50.000 0.00 0.00 39.02 3.71
2249 2740 6.357367 GCAATCTTTCCACTCCTCCTTATTA 58.643 40.000 0.00 0.00 0.00 0.98
2292 2783 8.568794 CATGTTCCTCGACTTACTATGAATCTA 58.431 37.037 0.00 0.00 0.00 1.98
2475 2966 1.302431 CACCACCATCGCCAGTTCA 60.302 57.895 0.00 0.00 0.00 3.18
2481 2972 2.203070 ATCGCCAGTTCATCCGCC 60.203 61.111 0.00 0.00 0.00 6.13
2482 2973 4.812476 TCGCCAGTTCATCCGCCG 62.812 66.667 0.00 0.00 0.00 6.46
2485 2976 4.776322 CCAGTTCATCCGCCGCCA 62.776 66.667 0.00 0.00 0.00 5.69
2486 2977 3.197790 CAGTTCATCCGCCGCCAG 61.198 66.667 0.00 0.00 0.00 4.85
2487 2978 3.706373 AGTTCATCCGCCGCCAGT 61.706 61.111 0.00 0.00 0.00 4.00
2488 2979 2.746277 GTTCATCCGCCGCCAGTT 60.746 61.111 0.00 0.00 0.00 3.16
2489 2980 2.435938 TTCATCCGCCGCCAGTTC 60.436 61.111 0.00 0.00 0.00 3.01
2490 2981 3.969250 TTCATCCGCCGCCAGTTCC 62.969 63.158 0.00 0.00 0.00 3.62
2491 2982 4.473520 CATCCGCCGCCAGTTCCT 62.474 66.667 0.00 0.00 0.00 3.36
2492 2983 4.162690 ATCCGCCGCCAGTTCCTC 62.163 66.667 0.00 0.00 0.00 3.71
2505 2996 2.276116 TTCCTCCGCTTCTGTCGCT 61.276 57.895 0.00 0.00 0.00 4.93
2514 3005 1.387084 GCTTCTGTCGCTTCTGTTACG 59.613 52.381 0.00 0.00 0.00 3.18
2636 3127 5.391256 TGTCTCTTTAGAGTGTCAGGGTTA 58.609 41.667 6.65 0.00 42.60 2.85
2638 3129 6.497259 TGTCTCTTTAGAGTGTCAGGGTTATT 59.503 38.462 6.65 0.00 42.60 1.40
2703 3194 1.984297 GTGTCTAAGCGTCCTTTCGAC 59.016 52.381 0.00 0.00 38.21 4.20
2841 3332 4.634883 TCTCGTAGTGAGGTGTTGTCTATC 59.365 45.833 0.00 0.00 45.32 2.08
3016 3507 0.969149 TCAGAATGGCGTGTCTGAGT 59.031 50.000 13.86 0.00 44.12 3.41
3060 3551 1.217585 CGGCTCGTGCGATGATGATT 61.218 55.000 3.02 0.00 40.82 2.57
3288 3779 4.269603 CAGTCTGTTGAGTGTGTCTTCTTG 59.730 45.833 0.00 0.00 38.48 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.627699 TGAATTGCAGAAGGTGGTTTCC 59.372 45.455 0.00 0.00 0.00 3.13
4 5 3.299503 AGTTGAATTGCAGAAGGTGGTT 58.700 40.909 0.00 0.00 0.00 3.67
5 6 2.949447 AGTTGAATTGCAGAAGGTGGT 58.051 42.857 0.00 0.00 0.00 4.16
6 7 4.326504 AAAGTTGAATTGCAGAAGGTGG 57.673 40.909 0.00 0.00 0.00 4.61
7 8 5.646467 CAAAAGTTGAATTGCAGAAGGTG 57.354 39.130 0.00 0.00 0.00 4.00
16 17 9.696917 AAAGTATTAGAGGCAAAAGTTGAATTG 57.303 29.630 0.00 0.00 0.00 2.32
17 18 9.696917 CAAAGTATTAGAGGCAAAAGTTGAATT 57.303 29.630 0.00 0.00 0.00 2.17
18 19 7.814587 GCAAAGTATTAGAGGCAAAAGTTGAAT 59.185 33.333 0.00 0.00 0.00 2.57
19 20 7.145323 GCAAAGTATTAGAGGCAAAAGTTGAA 58.855 34.615 0.00 0.00 0.00 2.69
20 21 6.567701 CGCAAAGTATTAGAGGCAAAAGTTGA 60.568 38.462 0.00 0.00 0.00 3.18
21 22 5.569059 CGCAAAGTATTAGAGGCAAAAGTTG 59.431 40.000 0.00 0.00 0.00 3.16
22 23 5.335661 CCGCAAAGTATTAGAGGCAAAAGTT 60.336 40.000 0.00 0.00 0.00 2.66
23 24 4.156008 CCGCAAAGTATTAGAGGCAAAAGT 59.844 41.667 0.00 0.00 0.00 2.66
24 25 4.156008 ACCGCAAAGTATTAGAGGCAAAAG 59.844 41.667 0.00 0.00 0.00 2.27
25 26 4.076394 ACCGCAAAGTATTAGAGGCAAAA 58.924 39.130 0.00 0.00 0.00 2.44
26 27 3.438781 CACCGCAAAGTATTAGAGGCAAA 59.561 43.478 0.00 0.00 0.00 3.68
27 28 3.006940 CACCGCAAAGTATTAGAGGCAA 58.993 45.455 0.00 0.00 0.00 4.52
28 29 2.627945 CACCGCAAAGTATTAGAGGCA 58.372 47.619 0.00 0.00 0.00 4.75
29 30 1.940613 CCACCGCAAAGTATTAGAGGC 59.059 52.381 0.00 0.00 0.00 4.70
30 31 3.536956 TCCACCGCAAAGTATTAGAGG 57.463 47.619 0.00 0.00 0.00 3.69
31 32 5.696724 CCTTATCCACCGCAAAGTATTAGAG 59.303 44.000 0.00 0.00 0.00 2.43
32 33 5.607477 CCTTATCCACCGCAAAGTATTAGA 58.393 41.667 0.00 0.00 0.00 2.10
33 34 4.213482 GCCTTATCCACCGCAAAGTATTAG 59.787 45.833 0.00 0.00 0.00 1.73
34 35 4.131596 GCCTTATCCACCGCAAAGTATTA 58.868 43.478 0.00 0.00 0.00 0.98
35 36 2.949644 GCCTTATCCACCGCAAAGTATT 59.050 45.455 0.00 0.00 0.00 1.89
36 37 2.572290 GCCTTATCCACCGCAAAGTAT 58.428 47.619 0.00 0.00 0.00 2.12
37 38 1.741055 CGCCTTATCCACCGCAAAGTA 60.741 52.381 0.00 0.00 0.00 2.24
38 39 1.024579 CGCCTTATCCACCGCAAAGT 61.025 55.000 0.00 0.00 0.00 2.66
39 40 1.714899 CCGCCTTATCCACCGCAAAG 61.715 60.000 0.00 0.00 0.00 2.77
40 41 1.747367 CCGCCTTATCCACCGCAAA 60.747 57.895 0.00 0.00 0.00 3.68
41 42 2.124901 CCGCCTTATCCACCGCAA 60.125 61.111 0.00 0.00 0.00 4.85
42 43 2.472414 AAACCGCCTTATCCACCGCA 62.472 55.000 0.00 0.00 0.00 5.69
43 44 1.310216 AAAACCGCCTTATCCACCGC 61.310 55.000 0.00 0.00 0.00 5.68
44 45 2.027003 TAAAACCGCCTTATCCACCG 57.973 50.000 0.00 0.00 0.00 4.94
45 46 3.816994 AGATAAAACCGCCTTATCCACC 58.183 45.455 6.02 0.00 36.73 4.61
46 47 5.642491 GGATAGATAAAACCGCCTTATCCAC 59.358 44.000 3.43 0.00 36.73 4.02
47 48 5.308497 TGGATAGATAAAACCGCCTTATCCA 59.692 40.000 6.29 6.29 38.71 3.41
48 49 5.801380 TGGATAGATAAAACCGCCTTATCC 58.199 41.667 0.00 0.00 36.73 2.59
49 50 9.099454 CTTATGGATAGATAAAACCGCCTTATC 57.901 37.037 0.00 0.00 36.44 1.75
50 51 8.603304 ACTTATGGATAGATAAAACCGCCTTAT 58.397 33.333 0.00 0.00 0.00 1.73
51 52 7.970102 ACTTATGGATAGATAAAACCGCCTTA 58.030 34.615 0.00 0.00 0.00 2.69
52 53 6.838382 ACTTATGGATAGATAAAACCGCCTT 58.162 36.000 0.00 0.00 0.00 4.35
53 54 6.435292 ACTTATGGATAGATAAAACCGCCT 57.565 37.500 0.00 0.00 0.00 5.52
54 55 7.876582 AGTAACTTATGGATAGATAAAACCGCC 59.123 37.037 0.00 0.00 0.00 6.13
55 56 8.828688 AGTAACTTATGGATAGATAAAACCGC 57.171 34.615 0.00 0.00 0.00 5.68
60 61 9.998106 GCAGGAAGTAACTTATGGATAGATAAA 57.002 33.333 0.00 0.00 0.00 1.40
61 62 9.154632 TGCAGGAAGTAACTTATGGATAGATAA 57.845 33.333 0.00 0.00 0.00 1.75
62 63 8.585881 GTGCAGGAAGTAACTTATGGATAGATA 58.414 37.037 0.00 0.00 0.00 1.98
63 64 7.445945 GTGCAGGAAGTAACTTATGGATAGAT 58.554 38.462 0.00 0.00 0.00 1.98
64 65 6.183360 GGTGCAGGAAGTAACTTATGGATAGA 60.183 42.308 0.00 0.00 0.00 1.98
65 66 5.992217 GGTGCAGGAAGTAACTTATGGATAG 59.008 44.000 0.00 0.00 0.00 2.08
66 67 5.163237 GGGTGCAGGAAGTAACTTATGGATA 60.163 44.000 0.00 0.00 0.00 2.59
67 68 4.385310 GGGTGCAGGAAGTAACTTATGGAT 60.385 45.833 0.00 0.00 0.00 3.41
68 69 3.054655 GGGTGCAGGAAGTAACTTATGGA 60.055 47.826 0.00 0.00 0.00 3.41
69 70 3.279434 GGGTGCAGGAAGTAACTTATGG 58.721 50.000 0.00 0.00 0.00 2.74
70 71 3.279434 GGGGTGCAGGAAGTAACTTATG 58.721 50.000 0.00 0.00 0.00 1.90
71 72 2.241430 GGGGGTGCAGGAAGTAACTTAT 59.759 50.000 0.00 0.00 0.00 1.73
72 73 1.631898 GGGGGTGCAGGAAGTAACTTA 59.368 52.381 0.00 0.00 0.00 2.24
73 74 0.404426 GGGGGTGCAGGAAGTAACTT 59.596 55.000 0.00 0.00 0.00 2.66
74 75 0.770557 TGGGGGTGCAGGAAGTAACT 60.771 55.000 0.00 0.00 0.00 2.24
75 76 0.322546 CTGGGGGTGCAGGAAGTAAC 60.323 60.000 0.00 0.00 0.00 2.50
76 77 0.474854 TCTGGGGGTGCAGGAAGTAA 60.475 55.000 0.00 0.00 0.00 2.24
77 78 0.474854 TTCTGGGGGTGCAGGAAGTA 60.475 55.000 0.00 0.00 0.00 2.24
78 79 1.774217 TTCTGGGGGTGCAGGAAGT 60.774 57.895 0.00 0.00 0.00 3.01
79 80 1.303643 GTTCTGGGGGTGCAGGAAG 60.304 63.158 0.00 0.00 0.00 3.46
80 81 1.360393 AAGTTCTGGGGGTGCAGGAA 61.360 55.000 0.00 0.00 0.00 3.36
81 82 0.474854 TAAGTTCTGGGGGTGCAGGA 60.475 55.000 0.00 0.00 0.00 3.86
82 83 0.625849 ATAAGTTCTGGGGGTGCAGG 59.374 55.000 0.00 0.00 0.00 4.85
83 84 1.743772 CGATAAGTTCTGGGGGTGCAG 60.744 57.143 0.00 0.00 0.00 4.41
84 85 0.251916 CGATAAGTTCTGGGGGTGCA 59.748 55.000 0.00 0.00 0.00 4.57
85 86 0.539986 TCGATAAGTTCTGGGGGTGC 59.460 55.000 0.00 0.00 0.00 5.01
86 87 4.632153 CTTATCGATAAGTTCTGGGGGTG 58.368 47.826 29.26 7.44 36.01 4.61
87 88 3.071167 GCTTATCGATAAGTTCTGGGGGT 59.929 47.826 34.29 0.00 41.34 4.95
88 89 3.557264 GGCTTATCGATAAGTTCTGGGGG 60.557 52.174 34.29 15.81 41.34 5.40
89 90 3.325135 AGGCTTATCGATAAGTTCTGGGG 59.675 47.826 34.29 16.40 41.34 4.96
90 91 4.039245 TGAGGCTTATCGATAAGTTCTGGG 59.961 45.833 34.29 16.99 41.34 4.45
91 92 5.201713 TGAGGCTTATCGATAAGTTCTGG 57.798 43.478 34.29 17.58 41.34 3.86
92 93 6.980978 TCTTTGAGGCTTATCGATAAGTTCTG 59.019 38.462 34.29 24.88 41.34 3.02
93 94 7.113658 TCTTTGAGGCTTATCGATAAGTTCT 57.886 36.000 34.29 30.56 41.34 3.01
94 95 7.772332 TTCTTTGAGGCTTATCGATAAGTTC 57.228 36.000 34.29 30.36 41.34 3.01
95 96 8.561738 TTTTCTTTGAGGCTTATCGATAAGTT 57.438 30.769 34.29 26.17 41.34 2.66
96 97 8.616076 CATTTTCTTTGAGGCTTATCGATAAGT 58.384 33.333 34.29 22.25 41.34 2.24
97 98 8.616076 ACATTTTCTTTGAGGCTTATCGATAAG 58.384 33.333 31.95 31.95 42.00 1.73
98 99 8.397906 CACATTTTCTTTGAGGCTTATCGATAA 58.602 33.333 16.69 16.69 0.00 1.75
99 100 7.467267 GCACATTTTCTTTGAGGCTTATCGATA 60.467 37.037 0.00 0.00 0.00 2.92
100 101 6.678900 GCACATTTTCTTTGAGGCTTATCGAT 60.679 38.462 2.16 2.16 0.00 3.59
101 102 5.391950 GCACATTTTCTTTGAGGCTTATCGA 60.392 40.000 0.00 0.00 0.00 3.59
102 103 4.795278 GCACATTTTCTTTGAGGCTTATCG 59.205 41.667 0.00 0.00 0.00 2.92
103 104 5.713025 TGCACATTTTCTTTGAGGCTTATC 58.287 37.500 0.00 0.00 0.00 1.75
104 105 5.726980 TGCACATTTTCTTTGAGGCTTAT 57.273 34.783 0.00 0.00 0.00 1.73
105 106 5.726980 ATGCACATTTTCTTTGAGGCTTA 57.273 34.783 0.00 0.00 0.00 3.09
106 107 4.612264 ATGCACATTTTCTTTGAGGCTT 57.388 36.364 0.00 0.00 0.00 4.35
107 108 4.612264 AATGCACATTTTCTTTGAGGCT 57.388 36.364 0.00 0.00 0.00 4.58
108 109 5.678132 AAAATGCACATTTTCTTTGAGGC 57.322 34.783 14.11 0.00 44.98 4.70
118 119 7.981225 ACAAAAGTAGACTGAAAATGCACATTT 59.019 29.630 2.77 2.77 42.35 2.32
119 120 7.491682 ACAAAAGTAGACTGAAAATGCACATT 58.508 30.769 0.00 0.00 0.00 2.71
120 121 7.042797 ACAAAAGTAGACTGAAAATGCACAT 57.957 32.000 0.00 0.00 0.00 3.21
121 122 6.449635 ACAAAAGTAGACTGAAAATGCACA 57.550 33.333 0.00 0.00 0.00 4.57
122 123 6.972328 TGAACAAAAGTAGACTGAAAATGCAC 59.028 34.615 0.00 0.00 0.00 4.57
123 124 7.094508 TGAACAAAAGTAGACTGAAAATGCA 57.905 32.000 0.00 0.00 0.00 3.96
124 125 7.985634 TTGAACAAAAGTAGACTGAAAATGC 57.014 32.000 0.00 0.00 0.00 3.56
125 126 9.734620 TCATTGAACAAAAGTAGACTGAAAATG 57.265 29.630 0.00 0.00 0.00 2.32
127 128 9.787532 CTTCATTGAACAAAAGTAGACTGAAAA 57.212 29.630 0.00 0.00 0.00 2.29
128 129 8.956426 ACTTCATTGAACAAAAGTAGACTGAAA 58.044 29.630 0.00 0.00 30.47 2.69
129 130 8.506168 ACTTCATTGAACAAAAGTAGACTGAA 57.494 30.769 0.00 1.29 30.47 3.02
130 131 8.506168 AACTTCATTGAACAAAAGTAGACTGA 57.494 30.769 0.00 0.00 31.94 3.41
131 132 8.397906 TGAACTTCATTGAACAAAAGTAGACTG 58.602 33.333 0.00 0.00 31.94 3.51
132 133 8.506168 TGAACTTCATTGAACAAAAGTAGACT 57.494 30.769 0.00 0.00 31.94 3.24
133 134 7.857885 CCTGAACTTCATTGAACAAAAGTAGAC 59.142 37.037 0.00 3.08 31.94 2.59
134 135 7.773224 TCCTGAACTTCATTGAACAAAAGTAGA 59.227 33.333 0.00 0.70 31.94 2.59
135 136 7.930217 TCCTGAACTTCATTGAACAAAAGTAG 58.070 34.615 0.00 2.13 31.94 2.57
136 137 7.873719 TCCTGAACTTCATTGAACAAAAGTA 57.126 32.000 0.00 0.00 31.94 2.24
137 138 6.773976 TCCTGAACTTCATTGAACAAAAGT 57.226 33.333 0.00 0.00 33.53 2.66
138 139 9.918630 ATTATCCTGAACTTCATTGAACAAAAG 57.081 29.630 0.00 0.00 0.00 2.27
139 140 9.912634 GATTATCCTGAACTTCATTGAACAAAA 57.087 29.630 0.00 0.00 0.00 2.44
140 141 9.076781 TGATTATCCTGAACTTCATTGAACAAA 57.923 29.630 0.00 0.00 0.00 2.83
141 142 8.634335 TGATTATCCTGAACTTCATTGAACAA 57.366 30.769 0.00 0.00 0.00 2.83
142 143 8.634335 TTGATTATCCTGAACTTCATTGAACA 57.366 30.769 0.00 0.00 0.00 3.18
159 160 8.635765 TGTTAGCCTTGGGATAATTGATTATC 57.364 34.615 13.03 13.03 44.91 1.75
160 161 9.605951 ATTGTTAGCCTTGGGATAATTGATTAT 57.394 29.630 0.00 0.00 35.96 1.28
161 162 9.077885 GATTGTTAGCCTTGGGATAATTGATTA 57.922 33.333 0.00 0.00 35.96 1.75
162 163 7.564660 TGATTGTTAGCCTTGGGATAATTGATT 59.435 33.333 0.00 0.00 35.96 2.57
163 164 7.068702 TGATTGTTAGCCTTGGGATAATTGAT 58.931 34.615 0.00 0.00 35.96 2.57
164 165 6.430864 TGATTGTTAGCCTTGGGATAATTGA 58.569 36.000 0.00 0.00 35.96 2.57
165 166 6.239120 CCTGATTGTTAGCCTTGGGATAATTG 60.239 42.308 0.00 0.00 35.96 2.32
166 167 5.835280 CCTGATTGTTAGCCTTGGGATAATT 59.165 40.000 0.00 0.00 35.96 1.40
167 168 5.388654 CCTGATTGTTAGCCTTGGGATAAT 58.611 41.667 0.00 0.00 35.96 1.28
168 169 4.386312 CCCTGATTGTTAGCCTTGGGATAA 60.386 45.833 0.00 0.00 35.64 1.75
169 170 3.138283 CCCTGATTGTTAGCCTTGGGATA 59.862 47.826 0.00 0.00 35.64 2.59
170 171 2.091665 CCCTGATTGTTAGCCTTGGGAT 60.092 50.000 0.00 0.00 35.64 3.85
171 172 1.284785 CCCTGATTGTTAGCCTTGGGA 59.715 52.381 0.00 0.00 35.64 4.37
172 173 1.005924 ACCCTGATTGTTAGCCTTGGG 59.994 52.381 0.00 0.00 39.26 4.12
173 174 2.290896 TGACCCTGATTGTTAGCCTTGG 60.291 50.000 0.00 0.00 0.00 3.61
174 175 3.071874 TGACCCTGATTGTTAGCCTTG 57.928 47.619 0.00 0.00 0.00 3.61
175 176 5.653255 ATATGACCCTGATTGTTAGCCTT 57.347 39.130 0.00 0.00 0.00 4.35
176 177 6.101150 TGTTATATGACCCTGATTGTTAGCCT 59.899 38.462 0.00 0.00 0.00 4.58
177 178 6.296026 TGTTATATGACCCTGATTGTTAGCC 58.704 40.000 0.00 0.00 0.00 3.93
178 179 7.801716 TTGTTATATGACCCTGATTGTTAGC 57.198 36.000 0.00 0.00 0.00 3.09
180 181 9.693739 ACAATTGTTATATGACCCTGATTGTTA 57.306 29.630 4.92 0.00 32.97 2.41
181 182 8.593945 ACAATTGTTATATGACCCTGATTGTT 57.406 30.769 4.92 1.53 32.97 2.83
182 183 8.593945 AACAATTGTTATATGACCCTGATTGT 57.406 30.769 22.10 10.32 36.94 2.71
183 184 8.137437 GGAACAATTGTTATATGACCCTGATTG 58.863 37.037 23.33 4.12 38.56 2.67
184 185 7.838696 TGGAACAATTGTTATATGACCCTGATT 59.161 33.333 23.33 0.00 38.56 2.57
185 186 7.353525 TGGAACAATTGTTATATGACCCTGAT 58.646 34.615 23.33 0.00 38.56 2.90
186 187 6.726379 TGGAACAATTGTTATATGACCCTGA 58.274 36.000 23.33 1.97 38.56 3.86
205 206 6.942532 TTAATCTTCACATAGGCATGGAAC 57.057 37.500 0.00 0.00 36.39 3.62
206 207 8.415553 CAATTTAATCTTCACATAGGCATGGAA 58.584 33.333 0.00 0.00 36.39 3.53
207 208 7.470424 GCAATTTAATCTTCACATAGGCATGGA 60.470 37.037 0.00 0.00 36.39 3.41
208 209 6.643770 GCAATTTAATCTTCACATAGGCATGG 59.356 38.462 0.00 0.00 36.39 3.66
209 210 6.643770 GGCAATTTAATCTTCACATAGGCATG 59.356 38.462 0.00 0.00 38.21 4.06
210 211 6.324512 TGGCAATTTAATCTTCACATAGGCAT 59.675 34.615 0.00 0.00 0.00 4.40
211 212 5.655974 TGGCAATTTAATCTTCACATAGGCA 59.344 36.000 0.00 0.00 0.00 4.75
212 213 5.979517 GTGGCAATTTAATCTTCACATAGGC 59.020 40.000 0.00 0.00 0.00 3.93
213 214 6.461509 GGGTGGCAATTTAATCTTCACATAGG 60.462 42.308 0.00 0.00 0.00 2.57
214 215 6.322201 AGGGTGGCAATTTAATCTTCACATAG 59.678 38.462 0.00 0.00 0.00 2.23
215 216 6.194235 AGGGTGGCAATTTAATCTTCACATA 58.806 36.000 0.00 0.00 0.00 2.29
216 217 5.025453 AGGGTGGCAATTTAATCTTCACAT 58.975 37.500 0.00 0.00 0.00 3.21
217 218 4.415596 AGGGTGGCAATTTAATCTTCACA 58.584 39.130 0.00 0.00 0.00 3.58
218 219 5.450550 GCTAGGGTGGCAATTTAATCTTCAC 60.451 44.000 0.00 0.00 0.00 3.18
219 220 4.644685 GCTAGGGTGGCAATTTAATCTTCA 59.355 41.667 0.00 0.00 0.00 3.02
220 221 4.889995 AGCTAGGGTGGCAATTTAATCTTC 59.110 41.667 0.00 0.00 0.00 2.87
221 222 4.646492 CAGCTAGGGTGGCAATTTAATCTT 59.354 41.667 0.00 0.00 0.00 2.40
222 223 4.210331 CAGCTAGGGTGGCAATTTAATCT 58.790 43.478 0.00 0.00 0.00 2.40
223 224 3.954258 ACAGCTAGGGTGGCAATTTAATC 59.046 43.478 0.00 0.00 35.13 1.75
224 225 3.981212 ACAGCTAGGGTGGCAATTTAAT 58.019 40.909 0.00 0.00 35.13 1.40
225 226 3.449746 ACAGCTAGGGTGGCAATTTAA 57.550 42.857 0.00 0.00 35.13 1.52
226 227 3.449746 AACAGCTAGGGTGGCAATTTA 57.550 42.857 0.00 0.00 35.13 1.40
227 228 2.309136 AACAGCTAGGGTGGCAATTT 57.691 45.000 0.00 0.00 35.13 1.82
228 229 2.299867 CAAAACAGCTAGGGTGGCAATT 59.700 45.455 0.00 0.00 35.13 2.32
229 230 1.895131 CAAAACAGCTAGGGTGGCAAT 59.105 47.619 0.00 0.00 35.13 3.56
230 231 1.133637 TCAAAACAGCTAGGGTGGCAA 60.134 47.619 0.00 0.00 35.13 4.52
231 232 0.476338 TCAAAACAGCTAGGGTGGCA 59.524 50.000 0.00 0.00 35.13 4.92
232 233 1.745653 GATCAAAACAGCTAGGGTGGC 59.254 52.381 0.00 0.00 35.13 5.01
233 234 2.009774 CGATCAAAACAGCTAGGGTGG 58.990 52.381 0.00 0.00 35.13 4.61
234 235 2.699954 ACGATCAAAACAGCTAGGGTG 58.300 47.619 0.00 0.00 37.06 4.61
235 236 4.755266 ATACGATCAAAACAGCTAGGGT 57.245 40.909 0.00 0.00 0.00 4.34
236 237 4.209288 CGAATACGATCAAAACAGCTAGGG 59.791 45.833 0.00 0.00 42.66 3.53
237 238 4.209288 CCGAATACGATCAAAACAGCTAGG 59.791 45.833 0.00 0.00 42.66 3.02
238 239 4.209288 CCCGAATACGATCAAAACAGCTAG 59.791 45.833 0.00 0.00 42.66 3.42
239 240 4.116961 CCCGAATACGATCAAAACAGCTA 58.883 43.478 0.00 0.00 42.66 3.32
240 241 2.936498 CCCGAATACGATCAAAACAGCT 59.064 45.455 0.00 0.00 42.66 4.24
241 242 2.031683 CCCCGAATACGATCAAAACAGC 59.968 50.000 0.00 0.00 42.66 4.40
242 243 3.527533 TCCCCGAATACGATCAAAACAG 58.472 45.455 0.00 0.00 42.66 3.16
243 244 3.613494 TCCCCGAATACGATCAAAACA 57.387 42.857 0.00 0.00 42.66 2.83
244 245 3.064408 GGTTCCCCGAATACGATCAAAAC 59.936 47.826 0.00 0.00 42.66 2.43
245 246 3.272581 GGTTCCCCGAATACGATCAAAA 58.727 45.455 0.00 0.00 42.66 2.44
246 247 2.420408 GGGTTCCCCGAATACGATCAAA 60.420 50.000 0.00 0.00 42.66 2.69
247 248 1.139455 GGGTTCCCCGAATACGATCAA 59.861 52.381 0.00 0.00 42.66 2.57
248 249 0.754472 GGGTTCCCCGAATACGATCA 59.246 55.000 0.00 0.00 42.66 2.92
249 250 3.601277 GGGTTCCCCGAATACGATC 57.399 57.895 0.00 0.00 42.66 3.69
259 260 2.171870 TCTGTAATCGAATGGGTTCCCC 59.828 50.000 5.34 0.00 45.71 4.81
260 261 3.553828 TCTGTAATCGAATGGGTTCCC 57.446 47.619 0.12 0.12 0.00 3.97
261 262 4.941873 AGTTTCTGTAATCGAATGGGTTCC 59.058 41.667 0.00 0.00 0.00 3.62
262 263 5.673818 GCAGTTTCTGTAATCGAATGGGTTC 60.674 44.000 0.00 0.00 33.43 3.62
263 264 4.156008 GCAGTTTCTGTAATCGAATGGGTT 59.844 41.667 0.00 0.00 33.43 4.11
264 265 3.689649 GCAGTTTCTGTAATCGAATGGGT 59.310 43.478 0.00 0.00 33.43 4.51
265 266 3.689161 TGCAGTTTCTGTAATCGAATGGG 59.311 43.478 0.00 0.00 33.43 4.00
266 267 4.944962 TGCAGTTTCTGTAATCGAATGG 57.055 40.909 0.00 0.00 33.43 3.16
267 268 5.735892 CACATGCAGTTTCTGTAATCGAATG 59.264 40.000 0.00 0.00 33.43 2.67
268 269 5.412594 ACACATGCAGTTTCTGTAATCGAAT 59.587 36.000 0.00 0.00 33.43 3.34
269 270 4.754618 ACACATGCAGTTTCTGTAATCGAA 59.245 37.500 0.00 0.00 33.43 3.71
270 271 4.314961 ACACATGCAGTTTCTGTAATCGA 58.685 39.130 0.00 0.00 33.43 3.59
271 272 4.668576 ACACATGCAGTTTCTGTAATCG 57.331 40.909 0.00 0.00 33.43 3.34
286 287 7.075674 TCTAACACTAATGATGCAACACATG 57.924 36.000 0.00 0.00 39.84 3.21
287 288 6.881065 ACTCTAACACTAATGATGCAACACAT 59.119 34.615 0.00 0.00 43.54 3.21
288 289 6.230472 ACTCTAACACTAATGATGCAACACA 58.770 36.000 0.00 0.00 0.00 3.72
289 290 6.727824 ACTCTAACACTAATGATGCAACAC 57.272 37.500 0.00 0.00 0.00 3.32
331 332 6.820152 ACAACGGGATAAATACAAAGGAGTAC 59.180 38.462 0.00 0.00 0.00 2.73
332 333 6.949715 ACAACGGGATAAATACAAAGGAGTA 58.050 36.000 0.00 0.00 0.00 2.59
333 334 5.812286 ACAACGGGATAAATACAAAGGAGT 58.188 37.500 0.00 0.00 0.00 3.85
728 1134 4.214327 GAGCGGGAGGGAGCTTCG 62.214 72.222 0.00 0.00 44.69 3.79
729 1135 4.214327 CGAGCGGGAGGGAGCTTC 62.214 72.222 0.00 0.00 44.69 3.86
761 1167 4.214327 GAGCGGGAGGGAGCTTCG 62.214 72.222 0.00 0.00 44.69 3.79
762 1168 4.214327 CGAGCGGGAGGGAGCTTC 62.214 72.222 0.00 0.00 44.69 3.86
763 1169 4.761058 TCGAGCGGGAGGGAGCTT 62.761 66.667 0.00 0.00 44.69 3.74
765 1171 4.214327 CTTCGAGCGGGAGGGAGC 62.214 72.222 0.00 0.00 0.00 4.70
766 1172 4.214327 GCTTCGAGCGGGAGGGAG 62.214 72.222 0.00 0.00 0.00 4.30
830 1242 2.990674 AATCGATCGAGGCAGCGTCG 62.991 60.000 27.66 27.66 42.06 5.12
832 1244 0.872021 GAAATCGATCGAGGCAGCGT 60.872 55.000 23.84 1.17 0.00 5.07
834 1246 1.135867 GAGAAATCGATCGAGGCAGC 58.864 55.000 23.84 10.50 0.00 5.25
1525 2013 4.025858 GACAGCCTGGCAGCAGGA 62.026 66.667 22.65 0.00 45.00 3.86
1610 2098 1.097547 AGCAAACAACTGAGCACGCT 61.098 50.000 0.00 0.00 0.00 5.07
1694 2182 0.825010 AACCTCCAGCAAACCAGCAG 60.825 55.000 0.00 0.00 36.85 4.24
1759 2247 1.895798 ACTGGAGCGAGAATGAGTTGA 59.104 47.619 0.00 0.00 0.00 3.18
1998 2486 1.302511 GGAAGAACCTGAAGCCGCA 60.303 57.895 0.00 0.00 35.41 5.69
2240 2728 6.769822 AGCAACATCAGGAACATAATAAGGAG 59.230 38.462 0.00 0.00 0.00 3.69
2241 2729 6.662755 AGCAACATCAGGAACATAATAAGGA 58.337 36.000 0.00 0.00 0.00 3.36
2242 2730 6.543465 TGAGCAACATCAGGAACATAATAAGG 59.457 38.462 0.00 0.00 0.00 2.69
2249 2740 3.693807 ACATGAGCAACATCAGGAACAT 58.306 40.909 0.00 0.00 37.07 2.71
2292 2783 5.376625 TCAGTAAGTTGACCAGCAGAAAAT 58.623 37.500 0.00 0.00 0.00 1.82
2475 2966 4.162690 GAGGAACTGGCGGCGGAT 62.163 66.667 26.40 13.63 41.55 4.18
2481 2972 2.815647 GAAGCGGAGGAACTGGCG 60.816 66.667 0.00 0.00 41.55 5.69
2482 2973 1.743252 CAGAAGCGGAGGAACTGGC 60.743 63.158 0.00 0.00 41.55 4.85
2483 2974 0.390472 GACAGAAGCGGAGGAACTGG 60.390 60.000 0.00 0.00 41.55 4.00
2484 2975 0.734253 CGACAGAAGCGGAGGAACTG 60.734 60.000 0.00 0.00 41.55 3.16
2486 2977 2.095252 GCGACAGAAGCGGAGGAAC 61.095 63.158 0.00 0.00 0.00 3.62
2487 2978 1.816863 AAGCGACAGAAGCGGAGGAA 61.817 55.000 0.00 0.00 40.04 3.36
2488 2979 2.214181 GAAGCGACAGAAGCGGAGGA 62.214 60.000 0.00 0.00 40.04 3.71
2489 2980 1.807573 GAAGCGACAGAAGCGGAGG 60.808 63.158 0.00 0.00 40.04 4.30
2490 2981 1.075425 CAGAAGCGACAGAAGCGGAG 61.075 60.000 0.00 0.00 40.04 4.63
2491 2982 1.080501 CAGAAGCGACAGAAGCGGA 60.081 57.895 0.00 0.00 40.04 5.54
2492 2983 0.946221 AACAGAAGCGACAGAAGCGG 60.946 55.000 0.00 0.00 40.04 5.52
2493 2984 1.387084 GTAACAGAAGCGACAGAAGCG 59.613 52.381 0.00 0.00 40.04 4.68
2494 2985 1.387084 CGTAACAGAAGCGACAGAAGC 59.613 52.381 0.00 0.00 0.00 3.86
2495 2986 1.986378 CCGTAACAGAAGCGACAGAAG 59.014 52.381 0.00 0.00 0.00 2.85
2505 2996 3.735591 CTTGAAGGAACCCGTAACAGAA 58.264 45.455 0.00 0.00 0.00 3.02
2514 3005 1.527433 GCCACTGCTTGAAGGAACCC 61.527 60.000 0.00 0.00 33.53 4.11
2636 3127 3.159472 TGAATCTGCTTGCCAAGACAAT 58.841 40.909 9.04 0.00 0.00 2.71
2638 3129 2.156917 CTGAATCTGCTTGCCAAGACA 58.843 47.619 9.04 5.08 0.00 3.41
2703 3194 5.072329 ACCCCATACATCAGAATGGACTAAG 59.928 44.000 2.92 0.00 44.62 2.18
3016 3507 0.035317 AGAAGGTGACGATGCTTGCA 59.965 50.000 0.00 0.00 0.00 4.08
3288 3779 3.397482 CTTATGCTCATCACTGTAGCCC 58.603 50.000 0.00 0.00 35.33 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.