Multiple sequence alignment - TraesCS4D01G165700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G165700 chr4D 100.000 9290 0 0 1 9290 275763724 275754435 0.000000e+00 17156.0
1 TraesCS4D01G165700 chr4D 90.345 145 14 0 7013 7157 407807581 407807437 3.420000e-44 191.0
2 TraesCS4D01G165700 chr4D 92.500 40 3 0 8978 9017 386001646 386001685 3.620000e-04 58.4
3 TraesCS4D01G165700 chr4A 96.494 6845 174 31 1811 8607 210163385 210170211 0.000000e+00 11250.0
4 TraesCS4D01G165700 chr4A 91.269 859 31 15 548 1377 210162193 210163036 0.000000e+00 1131.0
5 TraesCS4D01G165700 chr4A 91.584 606 35 11 8698 9290 210170210 210170812 0.000000e+00 822.0
6 TraesCS4D01G165700 chr4A 96.221 344 8 2 1429 1771 210163037 210163376 8.150000e-155 558.0
7 TraesCS4D01G165700 chr4A 83.673 343 36 6 1 343 210057083 210057405 1.170000e-78 305.0
8 TraesCS4D01G165700 chr4A 81.212 165 20 9 339 497 210162029 210162188 1.270000e-23 122.0
9 TraesCS4D01G165700 chr4B 97.159 5632 101 17 1453 7049 273241922 273247529 0.000000e+00 9459.0
10 TraesCS4D01G165700 chr4B 97.397 1575 32 4 7042 8607 273248337 273249911 0.000000e+00 2673.0
11 TraesCS4D01G165700 chr4B 89.969 957 36 13 405 1339 273240647 273241565 0.000000e+00 1181.0
12 TraesCS4D01G165700 chr4B 93.594 562 29 3 8731 9290 273264182 273264738 0.000000e+00 832.0
13 TraesCS4D01G165700 chr4B 90.127 395 36 3 1 394 273232789 273233181 2.310000e-140 510.0
14 TraesCS4D01G165700 chr7D 91.724 145 12 0 7013 7157 400165214 400165070 1.580000e-47 202.0
15 TraesCS4D01G165700 chr7D 91.724 145 12 0 7013 7157 585292628 585292772 1.580000e-47 202.0
16 TraesCS4D01G165700 chr5A 89.928 139 14 0 7015 7153 484814146 484814284 7.410000e-41 180.0
17 TraesCS4D01G165700 chr5A 97.778 45 1 0 2428 2472 580938200 580938244 2.780000e-10 78.7
18 TraesCS4D01G165700 chr1B 97.895 95 2 0 8605 8699 429281430 429281524 2.080000e-36 165.0
19 TraesCS4D01G165700 chr3D 97.872 94 2 0 8606 8699 272281086 272281179 7.460000e-36 163.0
20 TraesCS4D01G165700 chr3D 96.000 50 2 0 2427 2476 187214521 187214570 2.150000e-11 82.4
21 TraesCS4D01G165700 chr2D 94.393 107 3 1 8605 8708 468096943 468096837 2.680000e-35 161.0
22 TraesCS4D01G165700 chr2D 93.396 106 3 2 8606 8707 562902795 562902690 4.490000e-33 154.0
23 TraesCS4D01G165700 chr2D 91.045 67 3 2 6061 6124 49876872 49876806 4.620000e-13 87.9
24 TraesCS4D01G165700 chr5D 96.875 96 2 1 8606 8700 285550847 285550752 9.660000e-35 159.0
25 TraesCS4D01G165700 chr5D 89.855 69 3 3 6059 6124 512302105 512302172 1.660000e-12 86.1
26 TraesCS4D01G165700 chr5D 95.556 45 2 0 2428 2472 460749697 460749741 1.290000e-08 73.1
27 TraesCS4D01G165700 chr3B 95.918 98 3 1 8606 8703 16891147 16891051 3.470000e-34 158.0
28 TraesCS4D01G165700 chr2A 95.876 97 4 0 8603 8699 758293771 758293675 3.470000e-34 158.0
29 TraesCS4D01G165700 chr2B 92.661 109 5 3 8604 8711 206371182 206371288 4.490000e-33 154.0
30 TraesCS4D01G165700 chr2B 95.312 64 2 1 6061 6124 321689840 321689902 5.940000e-17 100.0
31 TraesCS4D01G165700 chr1D 91.892 111 3 5 8606 8712 174151270 174151162 5.810000e-32 150.0
32 TraesCS4D01G165700 chr1D 95.506 89 4 0 2960 3048 185779550 185779462 9.720000e-30 143.0
33 TraesCS4D01G165700 chrUn 95.506 89 4 0 2960 3048 189402638 189402550 9.720000e-30 143.0
34 TraesCS4D01G165700 chrUn 95.506 89 4 0 2960 3048 251413914 251414002 9.720000e-30 143.0
35 TraesCS4D01G165700 chrUn 95.506 89 4 0 2960 3048 266524341 266524429 9.720000e-30 143.0
36 TraesCS4D01G165700 chr6D 95.506 89 4 0 2960 3048 124527679 124527591 9.720000e-30 143.0
37 TraesCS4D01G165700 chr6D 95.506 89 4 0 2960 3048 283216233 283216145 9.720000e-30 143.0
38 TraesCS4D01G165700 chr6D 95.506 89 4 0 2960 3048 369964030 369963942 9.720000e-30 143.0
39 TraesCS4D01G165700 chr6D 91.111 45 4 0 8972 9016 125084017 125083973 2.800000e-05 62.1
40 TraesCS4D01G165700 chr7B 93.939 66 3 1 6059 6124 53250574 53250638 2.130000e-16 99.0
41 TraesCS4D01G165700 chr1A 92.424 66 2 2 6061 6124 381297342 381297406 3.570000e-14 91.6
42 TraesCS4D01G165700 chr1A 91.045 67 3 2 6061 6124 40230843 40230909 4.620000e-13 87.9
43 TraesCS4D01G165700 chr1A 92.000 50 4 0 2427 2476 261679674 261679723 4.650000e-08 71.3
44 TraesCS4D01G165700 chr6A 92.308 65 1 2 6062 6124 189545072 189545134 1.280000e-13 89.8
45 TraesCS4D01G165700 chr5B 85.333 75 10 1 211 284 691435604 691435530 1.000000e-09 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G165700 chr4D 275754435 275763724 9289 True 17156.000000 17156 100.000000 1 9290 1 chr4D.!!$R1 9289
1 TraesCS4D01G165700 chr4A 210162029 210170812 8783 False 2776.600000 11250 91.356000 339 9290 5 chr4A.!!$F2 8951
2 TraesCS4D01G165700 chr4B 273240647 273249911 9264 False 4437.666667 9459 94.841667 405 8607 3 chr4B.!!$F3 8202
3 TraesCS4D01G165700 chr4B 273264182 273264738 556 False 832.000000 832 93.594000 8731 9290 1 chr4B.!!$F2 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.037605 GTGGTACAAGGTCTCGGTGG 60.038 60.000 0.00 0.00 44.16 4.61 F
182 183 0.039437 TTCAACAGAGAGGTCGCGTC 60.039 55.000 5.77 0.00 0.00 5.19 F
254 255 0.174617 GAGCGAGAGAGAGGGTTTGG 59.825 60.000 0.00 0.00 0.00 3.28 F
268 269 0.179086 GTTTGGGTGTGCAAGGGTTG 60.179 55.000 0.00 0.00 0.00 3.77 F
334 335 0.179189 CTGATTTGCTTCCCGTTCGC 60.179 55.000 0.00 0.00 0.00 4.70 F
751 778 0.250727 CACCACCACCACCAACCTAG 60.251 60.000 0.00 0.00 0.00 3.02 F
2327 2624 0.468226 GGTGTTCAGGGTGACAGACA 59.532 55.000 0.00 0.00 0.00 3.41 F
2658 2956 1.178534 CCGTGGGGACTGTTGCATTT 61.179 55.000 0.00 0.00 34.06 2.32 F
4025 4334 1.842052 ACAATGATGGCAGCATCACA 58.158 45.000 19.71 0.00 43.42 3.58 F
5056 5368 2.202974 GCGGCTAAGTTACCCCCG 60.203 66.667 0.00 7.27 41.72 5.73 F
6500 6822 0.329261 CCAATGTCCCAGCTCTTCCA 59.671 55.000 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1464 0.028902 CACACACACACGACGAGAGA 59.971 55.000 0.00 0.00 0.00 3.10 R
1422 1470 0.094558 CACACACACACACACACGAC 59.905 55.000 0.00 0.00 0.00 4.34 R
2240 2537 0.031857 TTTTCCAATGTGCACAGCCG 59.968 50.000 25.84 14.99 0.00 5.52 R
2297 2594 2.509548 CCCTGAACACCTATTCATCCCA 59.490 50.000 0.00 0.00 37.93 4.37 R
2531 2829 7.226128 GCACTCTCATTTTCATATGATCACTCA 59.774 37.037 6.17 0.00 34.24 3.41 R
2726 3024 1.671850 CCGTACAGTGTAAGGTGCCAG 60.672 57.143 22.84 1.22 0.00 4.85 R
4046 4355 1.856265 GCTTTGAGGAGCCACAACCG 61.856 60.000 0.00 0.00 36.66 4.44 R
4657 4966 0.252284 ACCGACATCTCTCTTGGGGT 60.252 55.000 0.00 0.00 0.00 4.95 R
5422 5734 1.338020 CATTAGCAATCCTTTCCGGCC 59.662 52.381 0.00 0.00 0.00 6.13 R
7134 8289 0.545171 CCATGCAGGTCCACATCTCT 59.455 55.000 0.00 0.00 0.00 3.10 R
8682 9851 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.513806 TTGATGATGATTTGTGGTACAAGG 57.486 37.500 0.00 0.00 44.16 3.61
30 31 5.569355 TGATGATGATTTGTGGTACAAGGT 58.431 37.500 0.00 0.00 44.16 3.50
31 32 5.647658 TGATGATGATTTGTGGTACAAGGTC 59.352 40.000 0.00 0.00 44.16 3.85
32 33 5.241403 TGATGATTTGTGGTACAAGGTCT 57.759 39.130 0.00 0.00 44.16 3.85
33 34 5.245531 TGATGATTTGTGGTACAAGGTCTC 58.754 41.667 0.00 0.00 44.16 3.36
34 35 3.659786 TGATTTGTGGTACAAGGTCTCG 58.340 45.455 0.00 0.00 44.16 4.04
35 36 2.536761 TTTGTGGTACAAGGTCTCGG 57.463 50.000 0.00 0.00 44.16 4.63
36 37 1.416243 TTGTGGTACAAGGTCTCGGT 58.584 50.000 0.00 0.00 44.16 4.69
37 38 0.677288 TGTGGTACAAGGTCTCGGTG 59.323 55.000 0.00 0.00 44.16 4.94
38 39 0.037605 GTGGTACAAGGTCTCGGTGG 60.038 60.000 0.00 0.00 44.16 4.61
39 40 0.470456 TGGTACAAGGTCTCGGTGGT 60.470 55.000 0.00 0.00 31.92 4.16
40 41 0.683412 GGTACAAGGTCTCGGTGGTT 59.317 55.000 0.00 0.00 0.00 3.67
41 42 1.071228 GGTACAAGGTCTCGGTGGTTT 59.929 52.381 0.00 0.00 0.00 3.27
42 43 2.299867 GGTACAAGGTCTCGGTGGTTTA 59.700 50.000 0.00 0.00 0.00 2.01
43 44 3.244181 GGTACAAGGTCTCGGTGGTTTAA 60.244 47.826 0.00 0.00 0.00 1.52
44 45 3.564053 ACAAGGTCTCGGTGGTTTAAA 57.436 42.857 0.00 0.00 0.00 1.52
45 46 3.208594 ACAAGGTCTCGGTGGTTTAAAC 58.791 45.455 9.98 9.98 0.00 2.01
61 62 6.459670 GTTTAAACCAAACTGGAAAGGAGA 57.540 37.500 7.12 0.00 42.79 3.71
62 63 7.050970 GTTTAAACCAAACTGGAAAGGAGAT 57.949 36.000 7.12 0.00 42.79 2.75
63 64 8.173542 GTTTAAACCAAACTGGAAAGGAGATA 57.826 34.615 7.12 0.00 42.79 1.98
64 65 8.803235 GTTTAAACCAAACTGGAAAGGAGATAT 58.197 33.333 7.12 0.00 42.79 1.63
66 67 7.939784 AAACCAAACTGGAAAGGAGATATAC 57.060 36.000 0.00 0.00 40.96 1.47
67 68 5.671493 ACCAAACTGGAAAGGAGATATACG 58.329 41.667 0.00 0.00 40.96 3.06
68 69 5.424252 ACCAAACTGGAAAGGAGATATACGA 59.576 40.000 0.00 0.00 40.96 3.43
69 70 5.986135 CCAAACTGGAAAGGAGATATACGAG 59.014 44.000 0.00 0.00 40.96 4.18
70 71 5.793030 AACTGGAAAGGAGATATACGAGG 57.207 43.478 0.00 0.00 0.00 4.63
71 72 5.063017 ACTGGAAAGGAGATATACGAGGA 57.937 43.478 0.00 0.00 0.00 3.71
72 73 5.074115 ACTGGAAAGGAGATATACGAGGAG 58.926 45.833 0.00 0.00 0.00 3.69
73 74 4.408276 TGGAAAGGAGATATACGAGGAGG 58.592 47.826 0.00 0.00 0.00 4.30
74 75 4.105858 TGGAAAGGAGATATACGAGGAGGA 59.894 45.833 0.00 0.00 0.00 3.71
75 76 5.078256 GGAAAGGAGATATACGAGGAGGAA 58.922 45.833 0.00 0.00 0.00 3.36
76 77 5.184287 GGAAAGGAGATATACGAGGAGGAAG 59.816 48.000 0.00 0.00 0.00 3.46
77 78 4.310022 AGGAGATATACGAGGAGGAAGG 57.690 50.000 0.00 0.00 0.00 3.46
78 79 3.917629 AGGAGATATACGAGGAGGAAGGA 59.082 47.826 0.00 0.00 0.00 3.36
79 80 4.018779 AGGAGATATACGAGGAGGAAGGAG 60.019 50.000 0.00 0.00 0.00 3.69
80 81 4.019141 GGAGATATACGAGGAGGAAGGAGA 60.019 50.000 0.00 0.00 0.00 3.71
81 82 5.339695 GGAGATATACGAGGAGGAAGGAGAT 60.340 48.000 0.00 0.00 0.00 2.75
82 83 6.126710 GGAGATATACGAGGAGGAAGGAGATA 60.127 46.154 0.00 0.00 0.00 1.98
83 84 6.895782 AGATATACGAGGAGGAAGGAGATAG 58.104 44.000 0.00 0.00 0.00 2.08
84 85 6.674861 AGATATACGAGGAGGAAGGAGATAGA 59.325 42.308 0.00 0.00 0.00 1.98
85 86 3.502123 ACGAGGAGGAAGGAGATAGAG 57.498 52.381 0.00 0.00 0.00 2.43
86 87 3.050089 ACGAGGAGGAAGGAGATAGAGA 58.950 50.000 0.00 0.00 0.00 3.10
87 88 3.655777 ACGAGGAGGAAGGAGATAGAGAT 59.344 47.826 0.00 0.00 0.00 2.75
88 89 4.847512 ACGAGGAGGAAGGAGATAGAGATA 59.152 45.833 0.00 0.00 0.00 1.98
89 90 5.491078 ACGAGGAGGAAGGAGATAGAGATAT 59.509 44.000 0.00 0.00 0.00 1.63
90 91 5.822519 CGAGGAGGAAGGAGATAGAGATATG 59.177 48.000 0.00 0.00 0.00 1.78
91 92 6.578238 CGAGGAGGAAGGAGATAGAGATATGT 60.578 46.154 0.00 0.00 0.00 2.29
92 93 7.365206 CGAGGAGGAAGGAGATAGAGATATGTA 60.365 44.444 0.00 0.00 0.00 2.29
93 94 7.639378 AGGAGGAAGGAGATAGAGATATGTAC 58.361 42.308 0.00 0.00 0.00 2.90
94 95 7.240828 AGGAGGAAGGAGATAGAGATATGTACA 59.759 40.741 0.00 0.00 0.00 2.90
95 96 7.891183 GGAGGAAGGAGATAGAGATATGTACAA 59.109 40.741 0.00 0.00 0.00 2.41
96 97 9.474313 GAGGAAGGAGATAGAGATATGTACAAT 57.526 37.037 0.00 0.00 0.00 2.71
108 109 9.745880 AGAGATATGTACAATAGTAACAAACCG 57.254 33.333 0.00 0.00 30.67 4.44
109 110 9.740239 GAGATATGTACAATAGTAACAAACCGA 57.260 33.333 0.00 0.00 30.67 4.69
118 119 9.444600 ACAATAGTAACAAACCGAATATCTTGT 57.555 29.630 0.00 0.00 33.51 3.16
125 126 8.836268 AACAAACCGAATATCTTGTAACTACA 57.164 30.769 0.00 0.00 31.90 2.74
126 127 8.248117 ACAAACCGAATATCTTGTAACTACAC 57.752 34.615 0.00 0.00 35.64 2.90
127 128 7.874016 ACAAACCGAATATCTTGTAACTACACA 59.126 33.333 0.00 0.00 35.64 3.72
128 129 8.714179 CAAACCGAATATCTTGTAACTACACAA 58.286 33.333 0.00 0.00 35.64 3.33
139 140 2.056094 ACTACACAAGTTACGACCGC 57.944 50.000 0.00 0.00 33.35 5.68
140 141 0.979811 CTACACAAGTTACGACCGCG 59.020 55.000 0.00 0.00 44.79 6.46
141 142 5.632025 AACTACACAAGTTACGACCGCGT 62.632 47.826 4.92 0.00 46.85 6.01
142 143 6.321686 AACTACACAAGTTACGACCGCGTA 62.322 45.833 4.92 0.00 46.85 4.42
156 157 4.108902 CGTACACATGCGCCAGAT 57.891 55.556 4.18 0.00 0.00 2.90
157 158 3.266282 CGTACACATGCGCCAGATA 57.734 52.632 4.18 0.00 0.00 1.98
158 159 1.783284 CGTACACATGCGCCAGATAT 58.217 50.000 4.18 0.00 0.00 1.63
159 160 2.135139 CGTACACATGCGCCAGATATT 58.865 47.619 4.18 0.00 0.00 1.28
160 161 2.096762 CGTACACATGCGCCAGATATTG 60.097 50.000 4.18 0.00 0.00 1.90
161 162 2.042686 ACACATGCGCCAGATATTGT 57.957 45.000 4.18 0.00 0.00 2.71
162 163 1.672363 ACACATGCGCCAGATATTGTG 59.328 47.619 4.18 9.76 0.00 3.33
163 164 1.672363 CACATGCGCCAGATATTGTGT 59.328 47.619 4.18 0.00 0.00 3.72
164 165 2.097954 CACATGCGCCAGATATTGTGTT 59.902 45.455 4.18 0.00 0.00 3.32
165 166 2.355756 ACATGCGCCAGATATTGTGTTC 59.644 45.455 4.18 0.00 0.00 3.18
166 167 2.106477 TGCGCCAGATATTGTGTTCA 57.894 45.000 4.18 0.00 0.00 3.18
167 168 2.431454 TGCGCCAGATATTGTGTTCAA 58.569 42.857 4.18 0.00 37.98 2.69
168 169 2.161410 TGCGCCAGATATTGTGTTCAAC 59.839 45.455 4.18 0.00 36.33 3.18
169 170 2.161410 GCGCCAGATATTGTGTTCAACA 59.839 45.455 0.00 0.00 36.33 3.33
170 171 3.728864 GCGCCAGATATTGTGTTCAACAG 60.729 47.826 0.00 0.00 40.74 3.16
171 172 3.684305 CGCCAGATATTGTGTTCAACAGA 59.316 43.478 0.00 0.00 40.74 3.41
172 173 4.201753 CGCCAGATATTGTGTTCAACAGAG 60.202 45.833 0.00 0.00 40.74 3.35
173 174 4.937620 GCCAGATATTGTGTTCAACAGAGA 59.062 41.667 0.00 0.00 40.74 3.10
174 175 5.064452 GCCAGATATTGTGTTCAACAGAGAG 59.936 44.000 0.00 0.00 40.74 3.20
175 176 5.583854 CCAGATATTGTGTTCAACAGAGAGG 59.416 44.000 0.00 0.00 40.74 3.69
176 177 6.169094 CAGATATTGTGTTCAACAGAGAGGT 58.831 40.000 0.00 0.00 40.74 3.85
177 178 6.312426 CAGATATTGTGTTCAACAGAGAGGTC 59.688 42.308 0.00 0.00 40.74 3.85
178 179 2.509052 TGTGTTCAACAGAGAGGTCG 57.491 50.000 0.00 0.00 33.78 4.79
179 180 1.140816 GTGTTCAACAGAGAGGTCGC 58.859 55.000 0.00 0.00 0.00 5.19
180 181 0.318699 TGTTCAACAGAGAGGTCGCG 60.319 55.000 0.00 0.00 0.00 5.87
181 182 0.318784 GTTCAACAGAGAGGTCGCGT 60.319 55.000 5.77 0.00 0.00 6.01
182 183 0.039437 TTCAACAGAGAGGTCGCGTC 60.039 55.000 5.77 0.00 0.00 5.19
183 184 0.889638 TCAACAGAGAGGTCGCGTCT 60.890 55.000 5.77 0.52 0.00 4.18
184 185 0.730834 CAACAGAGAGGTCGCGTCTG 60.731 60.000 18.76 18.76 42.91 3.51
185 186 2.202544 CAGAGAGGTCGCGTCTGC 60.203 66.667 5.77 0.00 31.83 4.26
186 187 2.360600 AGAGAGGTCGCGTCTGCT 60.361 61.111 5.77 1.84 39.65 4.24
187 188 2.101380 GAGAGGTCGCGTCTGCTC 59.899 66.667 5.77 8.04 39.65 4.26
188 189 2.360600 AGAGGTCGCGTCTGCTCT 60.361 61.111 5.77 6.15 39.65 4.09
189 190 1.078356 AGAGGTCGCGTCTGCTCTA 60.078 57.895 5.77 0.00 39.65 2.43
190 191 1.092921 AGAGGTCGCGTCTGCTCTAG 61.093 60.000 5.77 0.00 39.65 2.43
191 192 1.078356 AGGTCGCGTCTGCTCTAGA 60.078 57.895 5.77 0.00 39.65 2.43
203 204 4.763073 TCTGCTCTAGACCAACATGAATG 58.237 43.478 0.00 0.00 0.00 2.67
204 205 3.273434 TGCTCTAGACCAACATGAATGC 58.727 45.455 0.00 0.00 0.00 3.56
205 206 2.286294 GCTCTAGACCAACATGAATGCG 59.714 50.000 0.00 0.00 0.00 4.73
206 207 2.868583 CTCTAGACCAACATGAATGCGG 59.131 50.000 0.00 0.00 0.00 5.69
207 208 1.331756 CTAGACCAACATGAATGCGGC 59.668 52.381 0.00 0.00 0.00 6.53
208 209 0.608856 AGACCAACATGAATGCGGCA 60.609 50.000 4.58 4.58 0.00 5.69
209 210 0.456653 GACCAACATGAATGCGGCAC 60.457 55.000 4.03 0.00 0.00 5.01
210 211 0.895100 ACCAACATGAATGCGGCACT 60.895 50.000 4.03 0.00 0.00 4.40
211 212 0.457166 CCAACATGAATGCGGCACTG 60.457 55.000 4.03 3.45 0.00 3.66
212 213 0.522626 CAACATGAATGCGGCACTGA 59.477 50.000 4.03 0.00 0.00 3.41
213 214 0.523072 AACATGAATGCGGCACTGAC 59.477 50.000 4.03 0.00 0.00 3.51
214 215 1.061411 CATGAATGCGGCACTGACG 59.939 57.895 4.03 0.00 36.98 4.35
249 250 3.947841 CGCGAGCGAGAGAGAGGG 61.948 72.222 12.58 0.00 42.83 4.30
250 251 2.826738 GCGAGCGAGAGAGAGGGT 60.827 66.667 0.00 0.00 0.00 4.34
251 252 2.411504 GCGAGCGAGAGAGAGGGTT 61.412 63.158 0.00 0.00 0.00 4.11
252 253 1.939769 GCGAGCGAGAGAGAGGGTTT 61.940 60.000 0.00 0.00 0.00 3.27
253 254 0.179150 CGAGCGAGAGAGAGGGTTTG 60.179 60.000 0.00 0.00 0.00 2.93
254 255 0.174617 GAGCGAGAGAGAGGGTTTGG 59.825 60.000 0.00 0.00 0.00 3.28
255 256 1.219393 GCGAGAGAGAGGGTTTGGG 59.781 63.158 0.00 0.00 0.00 4.12
256 257 1.545706 GCGAGAGAGAGGGTTTGGGT 61.546 60.000 0.00 0.00 0.00 4.51
257 258 0.247736 CGAGAGAGAGGGTTTGGGTG 59.752 60.000 0.00 0.00 0.00 4.61
258 259 1.353091 GAGAGAGAGGGTTTGGGTGT 58.647 55.000 0.00 0.00 0.00 4.16
259 260 1.002544 GAGAGAGAGGGTTTGGGTGTG 59.997 57.143 0.00 0.00 0.00 3.82
260 261 0.606673 GAGAGAGGGTTTGGGTGTGC 60.607 60.000 0.00 0.00 0.00 4.57
261 262 1.150536 GAGAGGGTTTGGGTGTGCA 59.849 57.895 0.00 0.00 0.00 4.57
262 263 0.467290 GAGAGGGTTTGGGTGTGCAA 60.467 55.000 0.00 0.00 0.00 4.08
263 264 0.468029 AGAGGGTTTGGGTGTGCAAG 60.468 55.000 0.00 0.00 0.00 4.01
264 265 1.457455 AGGGTTTGGGTGTGCAAGG 60.457 57.895 0.00 0.00 0.00 3.61
265 266 2.506957 GGGTTTGGGTGTGCAAGGG 61.507 63.158 0.00 0.00 0.00 3.95
266 267 1.760480 GGTTTGGGTGTGCAAGGGT 60.760 57.895 0.00 0.00 0.00 4.34
267 268 1.334384 GGTTTGGGTGTGCAAGGGTT 61.334 55.000 0.00 0.00 0.00 4.11
268 269 0.179086 GTTTGGGTGTGCAAGGGTTG 60.179 55.000 0.00 0.00 0.00 3.77
269 270 0.616111 TTTGGGTGTGCAAGGGTTGT 60.616 50.000 0.00 0.00 0.00 3.32
270 271 1.040339 TTGGGTGTGCAAGGGTTGTC 61.040 55.000 0.00 0.00 0.00 3.18
271 272 2.551912 GGGTGTGCAAGGGTTGTCG 61.552 63.158 0.00 0.00 0.00 4.35
272 273 2.551912 GGTGTGCAAGGGTTGTCGG 61.552 63.158 0.00 0.00 0.00 4.79
273 274 1.525077 GTGTGCAAGGGTTGTCGGA 60.525 57.895 0.00 0.00 0.00 4.55
274 275 1.227823 TGTGCAAGGGTTGTCGGAG 60.228 57.895 0.00 0.00 0.00 4.63
275 276 1.966451 GTGCAAGGGTTGTCGGAGG 60.966 63.158 0.00 0.00 0.00 4.30
276 277 3.056328 GCAAGGGTTGTCGGAGGC 61.056 66.667 0.00 0.00 0.00 4.70
277 278 2.742372 CAAGGGTTGTCGGAGGCG 60.742 66.667 0.00 0.00 28.88 5.52
278 279 3.239253 AAGGGTTGTCGGAGGCGT 61.239 61.111 0.00 0.00 28.88 5.68
279 280 3.530910 AAGGGTTGTCGGAGGCGTG 62.531 63.158 0.00 0.00 28.88 5.34
288 289 4.357947 GGAGGCGTGCGTGACTGA 62.358 66.667 0.00 0.00 0.00 3.41
289 290 3.106407 GAGGCGTGCGTGACTGAC 61.106 66.667 0.00 0.00 0.00 3.51
290 291 3.841379 GAGGCGTGCGTGACTGACA 62.841 63.158 0.00 0.00 0.00 3.58
291 292 3.406361 GGCGTGCGTGACTGACAG 61.406 66.667 0.00 0.00 0.00 3.51
292 293 4.064491 GCGTGCGTGACTGACAGC 62.064 66.667 1.25 0.00 0.00 4.40
293 294 3.756677 CGTGCGTGACTGACAGCG 61.757 66.667 1.25 0.00 0.00 5.18
294 295 3.406361 GTGCGTGACTGACAGCGG 61.406 66.667 1.25 0.00 0.00 5.52
295 296 3.911698 TGCGTGACTGACAGCGGT 61.912 61.111 1.25 0.00 35.98 5.68
300 301 3.371063 GACTGACAGCGGTCCGGA 61.371 66.667 14.38 0.00 43.26 5.14
301 302 3.628280 GACTGACAGCGGTCCGGAC 62.628 68.421 27.04 27.04 43.26 4.79
302 303 4.778415 CTGACAGCGGTCCGGACG 62.778 72.222 27.68 22.43 43.65 4.79
316 317 4.699522 GACGCCGACAAAGCCCCT 62.700 66.667 0.00 0.00 0.00 4.79
318 319 4.697756 CGCCGACAAAGCCCCTGA 62.698 66.667 0.00 0.00 0.00 3.86
319 320 2.044946 GCCGACAAAGCCCCTGAT 60.045 61.111 0.00 0.00 0.00 2.90
320 321 1.678970 GCCGACAAAGCCCCTGATT 60.679 57.895 0.00 0.00 0.00 2.57
321 322 1.250840 GCCGACAAAGCCCCTGATTT 61.251 55.000 0.00 0.00 0.00 2.17
326 327 2.375173 CAAAGCCCCTGATTTGCTTC 57.625 50.000 0.00 0.00 44.11 3.86
327 328 1.066645 CAAAGCCCCTGATTTGCTTCC 60.067 52.381 0.00 0.00 44.11 3.46
328 329 0.615827 AAGCCCCTGATTTGCTTCCC 60.616 55.000 0.00 0.00 41.23 3.97
329 330 2.418083 GCCCCTGATTTGCTTCCCG 61.418 63.158 0.00 0.00 0.00 5.14
330 331 1.000896 CCCCTGATTTGCTTCCCGT 60.001 57.895 0.00 0.00 0.00 5.28
331 332 0.611896 CCCCTGATTTGCTTCCCGTT 60.612 55.000 0.00 0.00 0.00 4.44
332 333 0.811281 CCCTGATTTGCTTCCCGTTC 59.189 55.000 0.00 0.00 0.00 3.95
333 334 0.447801 CCTGATTTGCTTCCCGTTCG 59.552 55.000 0.00 0.00 0.00 3.95
334 335 0.179189 CTGATTTGCTTCCCGTTCGC 60.179 55.000 0.00 0.00 0.00 4.70
335 336 1.226018 GATTTGCTTCCCGTTCGCG 60.226 57.895 0.00 0.00 40.93 5.87
336 337 1.908066 GATTTGCTTCCCGTTCGCGT 61.908 55.000 5.77 0.00 39.32 6.01
337 338 2.182614 ATTTGCTTCCCGTTCGCGTG 62.183 55.000 5.77 0.00 39.32 5.34
338 339 3.793775 TTGCTTCCCGTTCGCGTGA 62.794 57.895 5.77 0.00 39.32 4.35
339 340 3.039588 GCTTCCCGTTCGCGTGAA 61.040 61.111 7.45 7.45 39.32 3.18
340 341 2.600475 GCTTCCCGTTCGCGTGAAA 61.600 57.895 13.92 0.00 36.62 2.69
341 342 1.935925 CTTCCCGTTCGCGTGAAAA 59.064 52.632 13.92 3.15 36.62 2.29
342 343 0.305313 CTTCCCGTTCGCGTGAAAAA 59.695 50.000 13.92 5.13 36.62 1.94
366 367 4.580528 ACGTCAACACACGAATACAAAAC 58.419 39.130 0.00 0.00 42.69 2.43
369 370 4.436523 GTCAACACACGAATACAAAACTGC 59.563 41.667 0.00 0.00 0.00 4.40
373 374 4.270566 ACACACGAATACAAAACTGCGTTA 59.729 37.500 0.00 0.00 0.00 3.18
386 387 5.352643 AACTGCGTTAGATGGTAAAACAC 57.647 39.130 0.00 0.00 0.00 3.32
396 397 0.994263 GGTAAAACACGTCCGGATCG 59.006 55.000 20.16 20.16 0.00 3.69
397 398 1.669795 GGTAAAACACGTCCGGATCGT 60.670 52.381 21.26 21.26 42.33 3.73
420 422 1.750399 CAGGATGGGGCGGTTTGAG 60.750 63.158 0.00 0.00 0.00 3.02
425 427 3.961414 GGGGCGGTTTGAGGGTGA 61.961 66.667 0.00 0.00 0.00 4.02
429 431 1.595093 GGCGGTTTGAGGGTGAATGG 61.595 60.000 0.00 0.00 0.00 3.16
445 447 3.119137 TGAATGGCCGATCCTCGTATATG 60.119 47.826 0.00 0.00 38.40 1.78
446 448 2.209690 TGGCCGATCCTCGTATATGA 57.790 50.000 0.00 0.00 38.40 2.15
447 449 1.816835 TGGCCGATCCTCGTATATGAC 59.183 52.381 0.00 0.00 38.40 3.06
448 450 2.093106 GGCCGATCCTCGTATATGACT 58.907 52.381 0.00 0.00 38.40 3.41
449 451 3.276857 GGCCGATCCTCGTATATGACTA 58.723 50.000 0.00 0.00 38.40 2.59
450 452 3.884091 GGCCGATCCTCGTATATGACTAT 59.116 47.826 0.00 0.00 38.40 2.12
496 503 4.760047 CCTCCCGCCCACACGAAG 62.760 72.222 0.00 0.00 34.06 3.79
497 504 4.760047 CTCCCGCCCACACGAAGG 62.760 72.222 0.00 0.00 34.06 3.46
499 506 4.323477 CCCGCCCACACGAAGGAA 62.323 66.667 0.00 0.00 34.06 3.36
500 507 2.742372 CCGCCCACACGAAGGAAG 60.742 66.667 0.00 0.00 34.06 3.46
501 508 2.742372 CGCCCACACGAAGGAAGG 60.742 66.667 0.00 0.00 34.06 3.46
502 509 3.056328 GCCCACACGAAGGAAGGC 61.056 66.667 0.00 0.00 0.00 4.35
503 510 2.742372 CCCACACGAAGGAAGGCG 60.742 66.667 0.00 0.00 0.00 5.52
504 511 2.342279 CCACACGAAGGAAGGCGA 59.658 61.111 0.00 0.00 0.00 5.54
505 512 1.738099 CCACACGAAGGAAGGCGAG 60.738 63.158 0.00 0.00 0.00 5.03
506 513 1.738099 CACACGAAGGAAGGCGAGG 60.738 63.158 0.00 0.00 0.00 4.63
507 514 2.207924 ACACGAAGGAAGGCGAGGT 61.208 57.895 0.00 0.00 0.00 3.85
508 515 1.446272 CACGAAGGAAGGCGAGGTC 60.446 63.158 0.00 0.00 0.00 3.85
509 516 2.184579 CGAAGGAAGGCGAGGTCC 59.815 66.667 0.00 0.00 0.00 4.46
510 517 2.585153 GAAGGAAGGCGAGGTCCC 59.415 66.667 0.00 0.00 34.13 4.46
511 518 3.009714 AAGGAAGGCGAGGTCCCC 61.010 66.667 0.00 0.00 34.13 4.81
512 519 3.564347 AAGGAAGGCGAGGTCCCCT 62.564 63.158 0.00 0.00 36.03 4.79
513 520 2.042230 GGAAGGCGAGGTCCCCTA 60.042 66.667 0.00 0.00 31.76 3.53
514 521 1.688187 GGAAGGCGAGGTCCCCTAA 60.688 63.158 0.00 0.00 31.76 2.69
515 522 1.269703 GGAAGGCGAGGTCCCCTAAA 61.270 60.000 0.00 0.00 31.76 1.85
516 523 0.616891 GAAGGCGAGGTCCCCTAAAA 59.383 55.000 0.00 0.00 31.76 1.52
517 524 1.003928 GAAGGCGAGGTCCCCTAAAAA 59.996 52.381 0.00 0.00 31.76 1.94
538 545 2.435059 GGAAGGCGAGGTGAGCAC 60.435 66.667 0.00 0.00 36.08 4.40
552 560 3.064324 GCACGGCCAGCCAGAAAT 61.064 61.111 9.78 0.00 35.37 2.17
556 564 2.180204 CGGCCAGCCAGAAATACCG 61.180 63.158 9.78 0.00 35.37 4.02
671 698 2.027192 AGATGCTGCTTTTCCTTCCGTA 60.027 45.455 0.00 0.00 0.00 4.02
702 729 4.362476 GCAAGGCAAAGGCACCCG 62.362 66.667 0.00 0.00 43.71 5.28
740 767 0.763035 AGTTACTCCACCACCACCAC 59.237 55.000 0.00 0.00 0.00 4.16
743 770 1.412453 TACTCCACCACCACCACCAC 61.412 60.000 0.00 0.00 0.00 4.16
745 772 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
746 773 2.277072 CACCACCACCACCACCAA 59.723 61.111 0.00 0.00 0.00 3.67
747 774 2.124693 CACCACCACCACCACCAAC 61.125 63.158 0.00 0.00 0.00 3.77
748 775 2.520741 CCACCACCACCACCAACC 60.521 66.667 0.00 0.00 0.00 3.77
749 776 2.600731 CACCACCACCACCAACCT 59.399 61.111 0.00 0.00 0.00 3.50
750 777 1.710996 CCACCACCACCACCAACCTA 61.711 60.000 0.00 0.00 0.00 3.08
751 778 0.250727 CACCACCACCACCAACCTAG 60.251 60.000 0.00 0.00 0.00 3.02
752 779 1.303317 CCACCACCACCAACCTAGC 60.303 63.158 0.00 0.00 0.00 3.42
753 780 1.303317 CACCACCACCAACCTAGCC 60.303 63.158 0.00 0.00 0.00 3.93
754 781 1.463410 ACCACCACCAACCTAGCCT 60.463 57.895 0.00 0.00 0.00 4.58
965 1013 2.368329 CCCTAACCCCCTCCCCTG 60.368 72.222 0.00 0.00 0.00 4.45
991 1039 4.082523 CCATGGAGGCGTGACGGT 62.083 66.667 5.56 0.00 0.00 4.83
1346 1394 1.595109 CCAATGCTATCGGCTCGCA 60.595 57.895 0.00 0.00 42.39 5.10
1377 1425 3.497262 CCGTCAGTTGGTTTTACCTCTTC 59.503 47.826 0.00 0.00 39.58 2.87
1378 1426 4.377897 CGTCAGTTGGTTTTACCTCTTCT 58.622 43.478 0.00 0.00 39.58 2.85
1379 1427 4.448060 CGTCAGTTGGTTTTACCTCTTCTC 59.552 45.833 0.00 0.00 39.58 2.87
1380 1428 5.612351 GTCAGTTGGTTTTACCTCTTCTCT 58.388 41.667 0.00 0.00 39.58 3.10
1381 1429 5.697178 GTCAGTTGGTTTTACCTCTTCTCTC 59.303 44.000 0.00 0.00 39.58 3.20
1382 1430 5.602978 TCAGTTGGTTTTACCTCTTCTCTCT 59.397 40.000 0.00 0.00 39.58 3.10
1383 1431 5.929415 CAGTTGGTTTTACCTCTTCTCTCTC 59.071 44.000 0.00 0.00 39.58 3.20
1384 1432 5.841783 AGTTGGTTTTACCTCTTCTCTCTCT 59.158 40.000 0.00 0.00 39.58 3.10
1385 1433 5.986501 TGGTTTTACCTCTTCTCTCTCTC 57.013 43.478 0.00 0.00 39.58 3.20
1386 1434 5.646215 TGGTTTTACCTCTTCTCTCTCTCT 58.354 41.667 0.00 0.00 39.58 3.10
1387 1435 5.712917 TGGTTTTACCTCTTCTCTCTCTCTC 59.287 44.000 0.00 0.00 39.58 3.20
1388 1436 5.949952 GGTTTTACCTCTTCTCTCTCTCTCT 59.050 44.000 0.00 0.00 34.73 3.10
1389 1437 6.095021 GGTTTTACCTCTTCTCTCTCTCTCTC 59.905 46.154 0.00 0.00 34.73 3.20
1390 1438 6.636454 TTTACCTCTTCTCTCTCTCTCTCT 57.364 41.667 0.00 0.00 0.00 3.10
1391 1439 4.762289 ACCTCTTCTCTCTCTCTCTCTC 57.238 50.000 0.00 0.00 0.00 3.20
1392 1440 4.366267 ACCTCTTCTCTCTCTCTCTCTCT 58.634 47.826 0.00 0.00 0.00 3.10
1393 1441 4.407296 ACCTCTTCTCTCTCTCTCTCTCTC 59.593 50.000 0.00 0.00 0.00 3.20
1394 1442 4.653341 CCTCTTCTCTCTCTCTCTCTCTCT 59.347 50.000 0.00 0.00 0.00 3.10
1395 1443 5.221422 CCTCTTCTCTCTCTCTCTCTCTCTC 60.221 52.000 0.00 0.00 0.00 3.20
1396 1444 5.523588 TCTTCTCTCTCTCTCTCTCTCTCT 58.476 45.833 0.00 0.00 0.00 3.10
1397 1445 5.596361 TCTTCTCTCTCTCTCTCTCTCTCTC 59.404 48.000 0.00 0.00 0.00 3.20
1398 1446 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1399 1447 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1400 1448 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1401 1449 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1402 1450 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1403 1451 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1404 1452 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1405 1453 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1406 1454 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1407 1455 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1408 1456 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1409 1457 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1410 1458 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1411 1459 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1412 1460 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1413 1461 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1414 1462 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1415 1463 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1416 1464 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1417 1465 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1418 1466 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1419 1467 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1420 1468 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1421 1469 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1422 1470 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
1423 1471 3.632333 TCTCTCTCTCTCTCTCTCTCGT 58.368 50.000 0.00 0.00 0.00 4.18
1424 1472 3.632604 TCTCTCTCTCTCTCTCTCTCGTC 59.367 52.174 0.00 0.00 0.00 4.20
1425 1473 2.357952 TCTCTCTCTCTCTCTCTCGTCG 59.642 54.545 0.00 0.00 0.00 5.12
1426 1474 2.097036 TCTCTCTCTCTCTCTCGTCGT 58.903 52.381 0.00 0.00 0.00 4.34
1427 1475 2.159296 TCTCTCTCTCTCTCTCGTCGTG 60.159 54.545 0.00 0.00 0.00 4.35
1437 1485 0.524604 TCTCGTCGTGTGTGTGTGTG 60.525 55.000 0.00 0.00 0.00 3.82
1439 1487 1.073768 TCGTCGTGTGTGTGTGTGTG 61.074 55.000 0.00 0.00 0.00 3.82
1776 2071 5.105635 ACTGCCAAATCATAGGAACATGTTG 60.106 40.000 17.58 1.37 0.00 3.33
1777 2072 4.160065 TGCCAAATCATAGGAACATGTTGG 59.840 41.667 17.58 8.67 36.13 3.77
1778 2073 4.685924 CCAAATCATAGGAACATGTTGGC 58.314 43.478 17.58 1.83 30.08 4.52
1779 2074 4.403432 CCAAATCATAGGAACATGTTGGCT 59.597 41.667 17.58 0.00 30.08 4.75
1780 2075 5.450965 CCAAATCATAGGAACATGTTGGCTC 60.451 44.000 17.58 0.54 30.08 4.70
1781 2076 3.998913 TCATAGGAACATGTTGGCTCA 57.001 42.857 17.58 0.00 0.00 4.26
1782 2077 4.508551 TCATAGGAACATGTTGGCTCAT 57.491 40.909 17.58 1.27 0.00 2.90
1783 2078 5.628797 TCATAGGAACATGTTGGCTCATA 57.371 39.130 17.58 3.83 0.00 2.15
1784 2079 6.000246 TCATAGGAACATGTTGGCTCATAA 58.000 37.500 17.58 0.00 0.00 1.90
1785 2080 5.822519 TCATAGGAACATGTTGGCTCATAAC 59.177 40.000 17.58 0.00 0.00 1.89
1786 2081 4.032960 AGGAACATGTTGGCTCATAACA 57.967 40.909 17.58 0.00 41.72 2.41
1787 2082 4.603131 AGGAACATGTTGGCTCATAACAT 58.397 39.130 17.58 0.00 46.54 2.71
2000 2297 3.570912 TTTTTCTGACGGTCCCTTCTT 57.429 42.857 5.55 0.00 0.00 2.52
2221 2518 5.069119 TCAGTGTATGAGAAACAGTCAGTGT 59.931 40.000 0.00 0.00 37.53 3.55
2297 2594 0.951558 GGATCAGTTGCAACGGTTGT 59.048 50.000 25.60 14.88 0.00 3.32
2327 2624 0.468226 GGTGTTCAGGGTGACAGACA 59.532 55.000 0.00 0.00 0.00 3.41
2658 2956 1.178534 CCGTGGGGACTGTTGCATTT 61.179 55.000 0.00 0.00 34.06 2.32
2726 3024 5.036737 AGCATGTTAGAAATTTGCGTATGC 58.963 37.500 0.00 0.00 38.32 3.14
3028 3326 5.611374 TGATGCTAAACCATAGCTCTAACC 58.389 41.667 8.73 0.00 40.95 2.85
3791 4100 7.412853 CAAGATGTTTGTATGACTTATGCCTC 58.587 38.462 0.00 0.00 0.00 4.70
4025 4334 1.842052 ACAATGATGGCAGCATCACA 58.158 45.000 19.71 0.00 43.42 3.58
4592 4901 6.975772 GCGACTTCTGTTTATAGACTCTGAAT 59.024 38.462 0.00 0.00 0.00 2.57
4651 4960 3.189287 CGGCTTTGACTGTAAGAAGCATT 59.811 43.478 18.01 0.00 44.69 3.56
4657 4966 8.504005 GCTTTGACTGTAAGAAGCATTACTTTA 58.496 33.333 13.87 0.00 42.94 1.85
4673 4983 4.828072 ACTTTACCCCAAGAGAGATGTC 57.172 45.455 0.00 0.00 0.00 3.06
4782 5092 9.722184 AGGAAAGATAGTAGAAAACTAAACACC 57.278 33.333 0.00 0.00 43.87 4.16
5056 5368 2.202974 GCGGCTAAGTTACCCCCG 60.203 66.667 0.00 7.27 41.72 5.73
5422 5734 2.989840 CAAAGAGTCTACAACCTGAGCG 59.010 50.000 0.00 0.00 0.00 5.03
5537 5849 5.584649 TGAACACACAGTTTCTAAGTCTTGG 59.415 40.000 0.00 0.00 41.51 3.61
5569 5881 4.467795 TGTAGGCTCTTCTGCTGAACTATT 59.532 41.667 1.33 0.00 0.00 1.73
6196 6518 2.034124 AGCAACCAAATGTCTGCTTGT 58.966 42.857 1.78 0.00 37.77 3.16
6253 6575 8.910351 ATACTTCTATCTACATCCTTTTTGGC 57.090 34.615 0.00 0.00 35.26 4.52
6356 6678 6.610830 TCTTAGTTGGGACTTTGAGGATTTT 58.389 36.000 0.00 0.00 37.33 1.82
6369 6691 7.563556 ACTTTGAGGATTTTCCCTTTTTCAGTA 59.436 33.333 0.00 0.00 37.19 2.74
6467 6789 4.889409 TGTTTGACTGAAGAGGCAGAAAAT 59.111 37.500 0.00 0.00 38.94 1.82
6500 6822 0.329261 CCAATGTCCCAGCTCTTCCA 59.671 55.000 0.00 0.00 0.00 3.53
6774 7110 4.982701 GCCCTGTGCTGCCCTTGT 62.983 66.667 0.00 0.00 36.87 3.16
7257 8412 2.358898 TGAACAAACAGGAAGAGCTTGC 59.641 45.455 0.00 0.00 0.00 4.01
7626 8788 0.255890 TTATTCCAGCTGGCTGTCCC 59.744 55.000 28.91 0.00 42.15 4.46
7712 8874 6.061022 TGAACCTTACTGCTTTGGATGATA 57.939 37.500 0.00 0.00 0.00 2.15
7750 8916 8.445275 TGGTTCATCGCAAATATAGTTACATT 57.555 30.769 0.00 0.00 0.00 2.71
7870 9037 1.958579 GCTGCCTGCCAAATCATCATA 59.041 47.619 0.00 0.00 35.15 2.15
7941 9108 2.735823 GCAGTTGCTTTATGCCTATGC 58.264 47.619 0.00 0.00 42.00 3.14
7949 9116 4.137543 GCTTTATGCCTATGCCACTTACT 58.862 43.478 0.00 0.00 36.33 2.24
8012 9179 2.991250 TGCAGGTTGGAAAGATAGCTC 58.009 47.619 0.00 0.00 0.00 4.09
8087 9254 7.005296 TCCCAAGTAGGTGCACTTAATTTTTA 58.995 34.615 17.63 4.84 36.61 1.52
8198 9367 3.751175 TGTGCCTTTCTCAGGTTTAATCG 59.249 43.478 0.00 0.00 46.07 3.34
8235 9404 1.968050 ATCAGAACCTAACCCGGGCG 61.968 60.000 24.08 9.50 0.00 6.13
8299 9468 5.050091 GTGTCTTGTGGTTGACATTCTACAG 60.050 44.000 0.00 0.00 43.75 2.74
8488 9657 7.381948 TGCTCATGTCAACAAAAATAATGTGTC 59.618 33.333 0.00 0.00 0.00 3.67
8583 9752 7.827236 TCAGACAATTTTGGGTCGAGTAATATT 59.173 33.333 0.00 0.00 39.01 1.28
8594 9763 5.116882 GTCGAGTAATATTGAGTTTGGCCT 58.883 41.667 3.32 0.00 0.00 5.19
8607 9776 3.380320 AGTTTGGCCTTGTTGTGTTCTAC 59.620 43.478 3.32 0.00 0.00 2.59
8608 9777 3.290948 TTGGCCTTGTTGTGTTCTACT 57.709 42.857 3.32 0.00 0.00 2.57
8609 9778 2.846193 TGGCCTTGTTGTGTTCTACTC 58.154 47.619 3.32 0.00 0.00 2.59
8610 9779 2.152016 GGCCTTGTTGTGTTCTACTCC 58.848 52.381 0.00 0.00 0.00 3.85
8611 9780 2.152016 GCCTTGTTGTGTTCTACTCCC 58.848 52.381 0.00 0.00 0.00 4.30
8612 9781 2.224548 GCCTTGTTGTGTTCTACTCCCT 60.225 50.000 0.00 0.00 0.00 4.20
8613 9782 3.665190 CCTTGTTGTGTTCTACTCCCTC 58.335 50.000 0.00 0.00 0.00 4.30
8614 9783 3.557264 CCTTGTTGTGTTCTACTCCCTCC 60.557 52.174 0.00 0.00 0.00 4.30
8615 9784 1.616865 TGTTGTGTTCTACTCCCTCCG 59.383 52.381 0.00 0.00 0.00 4.63
8616 9785 1.617357 GTTGTGTTCTACTCCCTCCGT 59.383 52.381 0.00 0.00 0.00 4.69
8617 9786 2.005370 TGTGTTCTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
8618 9787 2.322658 TGTGTTCTACTCCCTCCGTTT 58.677 47.619 0.00 0.00 0.00 3.60
8619 9788 2.298163 TGTGTTCTACTCCCTCCGTTTC 59.702 50.000 0.00 0.00 0.00 2.78
8620 9789 2.298163 GTGTTCTACTCCCTCCGTTTCA 59.702 50.000 0.00 0.00 0.00 2.69
8621 9790 2.967201 TGTTCTACTCCCTCCGTTTCAA 59.033 45.455 0.00 0.00 0.00 2.69
8622 9791 3.388676 TGTTCTACTCCCTCCGTTTCAAA 59.611 43.478 0.00 0.00 0.00 2.69
8623 9792 4.141665 TGTTCTACTCCCTCCGTTTCAAAA 60.142 41.667 0.00 0.00 0.00 2.44
8624 9793 4.903045 TCTACTCCCTCCGTTTCAAAAT 57.097 40.909 0.00 0.00 0.00 1.82
8625 9794 6.168389 GTTCTACTCCCTCCGTTTCAAAATA 58.832 40.000 0.00 0.00 0.00 1.40
8626 9795 5.974108 TCTACTCCCTCCGTTTCAAAATAG 58.026 41.667 0.00 0.00 0.00 1.73
8627 9796 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
8628 9797 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
8629 9798 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
8630 9799 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
8631 9800 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
8632 9801 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
8633 9802 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
8634 9803 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
8635 9804 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
8636 9805 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
8637 9806 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
8638 9807 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
8639 9808 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
8640 9809 8.293867 CGTTTCAAAATAGATGACCCAACTTTA 58.706 33.333 0.00 0.00 0.00 1.85
8672 9841 8.680001 ACTTTACAAAGTTAGTACAAAGTTGGG 58.320 33.333 1.47 0.00 46.52 4.12
8673 9842 8.578448 TTTACAAAGTTAGTACAAAGTTGGGT 57.422 30.769 0.00 0.00 0.00 4.51
8674 9843 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.00 0.00 4.46
8675 9844 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.00 0.00 4.02
8676 9845 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.00 0.00 3.06
8677 9846 7.012989 ACAAAGTTAGTACAAAGTTGGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
8678 9847 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
8679 9848 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
8680 9849 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
8681 9850 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
8682 9851 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
8683 9852 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
8684 9853 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
8685 9854 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
8686 9855 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
8687 9856 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
8688 9857 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
8689 9858 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
8690 9859 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
8691 9860 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
8692 9861 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
8693 9862 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
8694 9863 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
8695 9864 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
8696 9865 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
8697 9866 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
8698 9867 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
8710 9879 3.322254 CGGAGGGAGTAGCTTACATTCAT 59.678 47.826 0.00 0.00 0.00 2.57
8712 9881 5.565045 CGGAGGGAGTAGCTTACATTCATAC 60.565 48.000 0.00 0.00 0.00 2.39
8788 9962 1.204467 CCCCCAAACACATGCATGTAC 59.796 52.381 30.92 0.00 39.39 2.90
8791 9965 3.698539 CCCCAAACACATGCATGTACATA 59.301 43.478 30.92 0.00 39.39 2.29
9020 10200 1.342474 ACATGATCCTCGACTCCCTGT 60.342 52.381 0.00 0.00 0.00 4.00
9053 10234 3.620719 GCCATGATCCTTGACTCTGTGAA 60.621 47.826 0.00 0.00 0.00 3.18
9095 10276 4.527509 TCTCAATCTCAGTTGACTCCAC 57.472 45.455 0.00 0.00 34.58 4.02
9114 10295 2.614057 CACTGTCTTCGCCTTTTCAAGT 59.386 45.455 0.00 0.00 0.00 3.16
9125 10306 8.480643 TTCGCCTTTTCAAGTTTTCATTTTTA 57.519 26.923 0.00 0.00 0.00 1.52
9155 10336 6.627087 TTTCACTTCTCCATGTCTATCCTT 57.373 37.500 0.00 0.00 0.00 3.36
9175 10356 2.189594 TGGCTCTCAATGTTCACCTG 57.810 50.000 0.00 0.00 0.00 4.00
9202 10383 2.757868 CACCCTCTCTCGATTGAACTCT 59.242 50.000 0.00 0.00 0.00 3.24
9237 10418 3.253921 TGCACATCCAAGAAGAACATGTG 59.746 43.478 0.00 6.07 44.77 3.21
9240 10421 2.655090 TCCAAGAAGAACATGTGCCA 57.345 45.000 0.00 0.00 0.00 4.92
9286 10467 8.434733 TTTCTTTTGCATTTTCATCAATGTCA 57.565 26.923 0.00 0.00 36.63 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.833682 ACCTTGTACCACAAATCATCATCAATA 59.166 33.333 0.00 0.00 37.69 1.90
6 7 6.009589 ACCTTGTACCACAAATCATCATCAA 58.990 36.000 0.00 0.00 37.69 2.57
7 8 5.569355 ACCTTGTACCACAAATCATCATCA 58.431 37.500 0.00 0.00 37.69 3.07
8 9 5.882557 AGACCTTGTACCACAAATCATCATC 59.117 40.000 0.00 0.00 37.69 2.92
9 10 5.819991 AGACCTTGTACCACAAATCATCAT 58.180 37.500 0.00 0.00 37.69 2.45
10 11 5.241403 AGACCTTGTACCACAAATCATCA 57.759 39.130 0.00 0.00 37.69 3.07
11 12 4.330074 CGAGACCTTGTACCACAAATCATC 59.670 45.833 0.00 0.00 37.69 2.92
12 13 4.253685 CGAGACCTTGTACCACAAATCAT 58.746 43.478 0.00 0.00 37.69 2.45
13 14 3.556213 CCGAGACCTTGTACCACAAATCA 60.556 47.826 0.00 0.00 37.69 2.57
14 15 3.000727 CCGAGACCTTGTACCACAAATC 58.999 50.000 0.00 0.00 37.69 2.17
15 16 2.370849 ACCGAGACCTTGTACCACAAAT 59.629 45.455 0.00 0.00 37.69 2.32
16 17 1.764134 ACCGAGACCTTGTACCACAAA 59.236 47.619 0.00 0.00 37.69 2.83
17 18 1.069513 CACCGAGACCTTGTACCACAA 59.930 52.381 0.00 0.00 36.54 3.33
18 19 0.677288 CACCGAGACCTTGTACCACA 59.323 55.000 0.00 0.00 0.00 4.17
19 20 0.037605 CCACCGAGACCTTGTACCAC 60.038 60.000 0.00 0.00 0.00 4.16
20 21 0.470456 ACCACCGAGACCTTGTACCA 60.470 55.000 0.00 0.00 0.00 3.25
21 22 0.683412 AACCACCGAGACCTTGTACC 59.317 55.000 0.00 0.00 0.00 3.34
22 23 2.538512 AAACCACCGAGACCTTGTAC 57.461 50.000 0.00 0.00 0.00 2.90
23 24 4.379652 GTTTAAACCACCGAGACCTTGTA 58.620 43.478 7.12 0.00 0.00 2.41
24 25 3.208594 GTTTAAACCACCGAGACCTTGT 58.791 45.455 7.12 0.00 0.00 3.16
25 26 3.891056 GTTTAAACCACCGAGACCTTG 57.109 47.619 7.12 0.00 0.00 3.61
39 40 8.950007 ATATCTCCTTTCCAGTTTGGTTTAAA 57.050 30.769 0.00 0.00 39.03 1.52
40 41 9.457436 GTATATCTCCTTTCCAGTTTGGTTTAA 57.543 33.333 0.00 0.00 39.03 1.52
41 42 7.767198 CGTATATCTCCTTTCCAGTTTGGTTTA 59.233 37.037 0.00 0.00 39.03 2.01
42 43 6.598064 CGTATATCTCCTTTCCAGTTTGGTTT 59.402 38.462 0.00 0.00 39.03 3.27
43 44 6.070424 TCGTATATCTCCTTTCCAGTTTGGTT 60.070 38.462 0.00 0.00 39.03 3.67
44 45 5.424252 TCGTATATCTCCTTTCCAGTTTGGT 59.576 40.000 0.00 0.00 39.03 3.67
45 46 5.914033 TCGTATATCTCCTTTCCAGTTTGG 58.086 41.667 0.00 0.00 39.43 3.28
46 47 5.986135 CCTCGTATATCTCCTTTCCAGTTTG 59.014 44.000 0.00 0.00 0.00 2.93
47 48 5.897824 TCCTCGTATATCTCCTTTCCAGTTT 59.102 40.000 0.00 0.00 0.00 2.66
48 49 5.455872 TCCTCGTATATCTCCTTTCCAGTT 58.544 41.667 0.00 0.00 0.00 3.16
49 50 5.063017 TCCTCGTATATCTCCTTTCCAGT 57.937 43.478 0.00 0.00 0.00 4.00
50 51 4.461081 CCTCCTCGTATATCTCCTTTCCAG 59.539 50.000 0.00 0.00 0.00 3.86
51 52 4.105858 TCCTCCTCGTATATCTCCTTTCCA 59.894 45.833 0.00 0.00 0.00 3.53
52 53 4.664392 TCCTCCTCGTATATCTCCTTTCC 58.336 47.826 0.00 0.00 0.00 3.13
53 54 5.184287 CCTTCCTCCTCGTATATCTCCTTTC 59.816 48.000 0.00 0.00 0.00 2.62
54 55 5.081032 CCTTCCTCCTCGTATATCTCCTTT 58.919 45.833 0.00 0.00 0.00 3.11
55 56 4.354387 TCCTTCCTCCTCGTATATCTCCTT 59.646 45.833 0.00 0.00 0.00 3.36
56 57 3.917629 TCCTTCCTCCTCGTATATCTCCT 59.082 47.826 0.00 0.00 0.00 3.69
57 58 4.019141 TCTCCTTCCTCCTCGTATATCTCC 60.019 50.000 0.00 0.00 0.00 3.71
58 59 5.168647 TCTCCTTCCTCCTCGTATATCTC 57.831 47.826 0.00 0.00 0.00 2.75
59 60 5.789574 ATCTCCTTCCTCCTCGTATATCT 57.210 43.478 0.00 0.00 0.00 1.98
60 61 6.891388 TCTATCTCCTTCCTCCTCGTATATC 58.109 44.000 0.00 0.00 0.00 1.63
61 62 6.674861 TCTCTATCTCCTTCCTCCTCGTATAT 59.325 42.308 0.00 0.00 0.00 0.86
62 63 6.024247 TCTCTATCTCCTTCCTCCTCGTATA 58.976 44.000 0.00 0.00 0.00 1.47
63 64 4.847512 TCTCTATCTCCTTCCTCCTCGTAT 59.152 45.833 0.00 0.00 0.00 3.06
64 65 4.232909 TCTCTATCTCCTTCCTCCTCGTA 58.767 47.826 0.00 0.00 0.00 3.43
65 66 3.050089 TCTCTATCTCCTTCCTCCTCGT 58.950 50.000 0.00 0.00 0.00 4.18
66 67 3.780804 TCTCTATCTCCTTCCTCCTCG 57.219 52.381 0.00 0.00 0.00 4.63
67 68 6.731467 ACATATCTCTATCTCCTTCCTCCTC 58.269 44.000 0.00 0.00 0.00 3.71
68 69 6.734918 ACATATCTCTATCTCCTTCCTCCT 57.265 41.667 0.00 0.00 0.00 3.69
69 70 7.406916 TGTACATATCTCTATCTCCTTCCTCC 58.593 42.308 0.00 0.00 0.00 4.30
70 71 8.871629 TTGTACATATCTCTATCTCCTTCCTC 57.128 38.462 0.00 0.00 0.00 3.71
82 83 9.745880 CGGTTTGTTACTATTGTACATATCTCT 57.254 33.333 0.00 0.00 0.00 3.10
83 84 9.740239 TCGGTTTGTTACTATTGTACATATCTC 57.260 33.333 0.00 0.00 0.00 2.75
92 93 9.444600 ACAAGATATTCGGTTTGTTACTATTGT 57.555 29.630 0.00 0.00 30.05 2.71
99 100 9.926158 TGTAGTTACAAGATATTCGGTTTGTTA 57.074 29.630 0.00 0.00 35.55 2.41
100 101 8.715088 GTGTAGTTACAAGATATTCGGTTTGTT 58.285 33.333 0.00 0.00 38.04 2.83
101 102 7.874016 TGTGTAGTTACAAGATATTCGGTTTGT 59.126 33.333 0.00 0.00 38.04 2.83
102 103 8.246908 TGTGTAGTTACAAGATATTCGGTTTG 57.753 34.615 0.00 0.00 38.04 2.93
103 104 8.836268 TTGTGTAGTTACAAGATATTCGGTTT 57.164 30.769 0.00 0.00 38.04 3.27
118 119 3.564511 GCGGTCGTAACTTGTGTAGTTA 58.435 45.455 0.00 0.00 45.22 2.24
120 121 1.664016 CGCGGTCGTAACTTGTGTAGT 60.664 52.381 0.00 0.00 39.32 2.73
121 122 0.979811 CGCGGTCGTAACTTGTGTAG 59.020 55.000 0.00 0.00 0.00 2.74
122 123 3.090598 CGCGGTCGTAACTTGTGTA 57.909 52.632 0.00 0.00 0.00 2.90
123 124 3.926497 CGCGGTCGTAACTTGTGT 58.074 55.556 0.00 0.00 0.00 3.72
139 140 1.783284 ATATCTGGCGCATGTGTACG 58.217 50.000 10.83 0.00 0.00 3.67
140 141 2.872245 ACAATATCTGGCGCATGTGTAC 59.128 45.455 10.83 2.20 0.00 2.90
141 142 2.871633 CACAATATCTGGCGCATGTGTA 59.128 45.455 10.83 0.00 34.85 2.90
142 143 1.672363 CACAATATCTGGCGCATGTGT 59.328 47.619 10.83 0.70 34.85 3.72
143 144 1.672363 ACACAATATCTGGCGCATGTG 59.328 47.619 10.83 13.87 42.78 3.21
144 145 2.042686 ACACAATATCTGGCGCATGT 57.957 45.000 10.83 0.00 0.00 3.21
145 146 2.355444 TGAACACAATATCTGGCGCATG 59.645 45.455 10.83 0.05 0.00 4.06
146 147 2.642427 TGAACACAATATCTGGCGCAT 58.358 42.857 10.83 0.00 0.00 4.73
147 148 2.106477 TGAACACAATATCTGGCGCA 57.894 45.000 10.83 0.00 0.00 6.09
148 149 2.161410 TGTTGAACACAATATCTGGCGC 59.839 45.455 0.00 0.00 29.87 6.53
149 150 3.684305 TCTGTTGAACACAATATCTGGCG 59.316 43.478 0.00 0.00 33.87 5.69
150 151 4.937620 TCTCTGTTGAACACAATATCTGGC 59.062 41.667 0.00 0.00 33.87 4.85
151 152 5.583854 CCTCTCTGTTGAACACAATATCTGG 59.416 44.000 0.00 0.00 33.87 3.86
152 153 6.169094 ACCTCTCTGTTGAACACAATATCTG 58.831 40.000 0.00 0.00 33.87 2.90
153 154 6.365970 ACCTCTCTGTTGAACACAATATCT 57.634 37.500 0.00 0.00 33.87 1.98
154 155 5.289675 CGACCTCTCTGTTGAACACAATATC 59.710 44.000 0.00 0.00 33.87 1.63
155 156 5.171476 CGACCTCTCTGTTGAACACAATAT 58.829 41.667 0.00 0.00 33.87 1.28
156 157 4.556233 CGACCTCTCTGTTGAACACAATA 58.444 43.478 0.00 0.00 33.87 1.90
157 158 3.393800 CGACCTCTCTGTTGAACACAAT 58.606 45.455 0.00 0.00 33.87 2.71
158 159 2.821546 CGACCTCTCTGTTGAACACAA 58.178 47.619 0.00 0.00 33.87 3.33
159 160 1.538204 GCGACCTCTCTGTTGAACACA 60.538 52.381 0.00 0.00 0.00 3.72
160 161 1.140816 GCGACCTCTCTGTTGAACAC 58.859 55.000 0.00 0.00 0.00 3.32
161 162 0.318699 CGCGACCTCTCTGTTGAACA 60.319 55.000 0.00 0.00 0.00 3.18
162 163 0.318784 ACGCGACCTCTCTGTTGAAC 60.319 55.000 15.93 0.00 0.00 3.18
163 164 0.039437 GACGCGACCTCTCTGTTGAA 60.039 55.000 15.93 0.00 0.00 2.69
164 165 0.889638 AGACGCGACCTCTCTGTTGA 60.890 55.000 15.93 0.00 0.00 3.18
165 166 0.730834 CAGACGCGACCTCTCTGTTG 60.731 60.000 15.93 0.00 0.00 3.33
166 167 1.581954 CAGACGCGACCTCTCTGTT 59.418 57.895 15.93 0.00 0.00 3.16
167 168 2.983930 GCAGACGCGACCTCTCTGT 61.984 63.158 15.93 0.00 34.94 3.41
168 169 2.202544 GCAGACGCGACCTCTCTG 60.203 66.667 15.93 16.46 35.48 3.35
169 170 2.360600 AGCAGACGCGACCTCTCT 60.361 61.111 15.93 0.42 45.49 3.10
170 171 1.090625 TAGAGCAGACGCGACCTCTC 61.091 60.000 15.93 15.79 45.49 3.20
171 172 1.078356 TAGAGCAGACGCGACCTCT 60.078 57.895 15.93 17.09 45.49 3.69
172 173 1.090625 TCTAGAGCAGACGCGACCTC 61.091 60.000 15.93 10.04 45.49 3.85
173 174 1.078356 TCTAGAGCAGACGCGACCT 60.078 57.895 15.93 6.53 45.49 3.85
174 175 1.062845 GTCTAGAGCAGACGCGACC 59.937 63.158 15.93 3.72 44.19 4.79
175 176 4.674496 GTCTAGAGCAGACGCGAC 57.326 61.111 15.93 6.86 44.19 5.19
181 182 4.763073 CATTCATGTTGGTCTAGAGCAGA 58.237 43.478 22.75 14.67 40.18 4.26
182 183 3.311871 GCATTCATGTTGGTCTAGAGCAG 59.688 47.826 22.75 12.69 40.18 4.24
183 184 3.273434 GCATTCATGTTGGTCTAGAGCA 58.727 45.455 20.43 20.43 36.99 4.26
184 185 2.286294 CGCATTCATGTTGGTCTAGAGC 59.714 50.000 15.12 15.12 0.00 4.09
185 186 2.868583 CCGCATTCATGTTGGTCTAGAG 59.131 50.000 0.00 0.00 0.00 2.43
186 187 2.905075 CCGCATTCATGTTGGTCTAGA 58.095 47.619 0.00 0.00 0.00 2.43
187 188 1.331756 GCCGCATTCATGTTGGTCTAG 59.668 52.381 0.00 0.00 0.00 2.43
188 189 1.339535 TGCCGCATTCATGTTGGTCTA 60.340 47.619 0.00 0.00 0.00 2.59
189 190 0.608856 TGCCGCATTCATGTTGGTCT 60.609 50.000 0.00 0.00 0.00 3.85
190 191 0.456653 GTGCCGCATTCATGTTGGTC 60.457 55.000 0.00 0.00 0.00 4.02
191 192 0.895100 AGTGCCGCATTCATGTTGGT 60.895 50.000 0.00 0.00 0.00 3.67
192 193 0.457166 CAGTGCCGCATTCATGTTGG 60.457 55.000 0.00 0.00 0.00 3.77
193 194 0.522626 TCAGTGCCGCATTCATGTTG 59.477 50.000 0.00 0.00 0.00 3.33
194 195 0.523072 GTCAGTGCCGCATTCATGTT 59.477 50.000 0.00 0.00 0.00 2.71
195 196 1.638388 CGTCAGTGCCGCATTCATGT 61.638 55.000 0.00 0.00 0.00 3.21
196 197 1.061411 CGTCAGTGCCGCATTCATG 59.939 57.895 0.00 0.00 0.00 3.07
197 198 3.489731 CGTCAGTGCCGCATTCAT 58.510 55.556 0.00 0.00 0.00 2.57
225 226 4.796231 TCTCGCTCGCGCCCTTTC 62.796 66.667 0.00 0.00 39.59 2.62
226 227 4.803426 CTCTCGCTCGCGCCCTTT 62.803 66.667 0.00 0.00 39.59 3.11
230 231 4.605967 CTCTCTCTCGCTCGCGCC 62.606 72.222 0.00 0.00 39.59 6.53
231 232 4.605967 CCTCTCTCTCGCTCGCGC 62.606 72.222 0.00 0.00 39.59 6.86
232 233 3.947841 CCCTCTCTCTCGCTCGCG 61.948 72.222 0.00 0.00 41.35 5.87
233 234 1.939769 AAACCCTCTCTCTCGCTCGC 61.940 60.000 0.00 0.00 0.00 5.03
234 235 0.179150 CAAACCCTCTCTCTCGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
235 236 0.174617 CCAAACCCTCTCTCTCGCTC 59.825 60.000 0.00 0.00 0.00 5.03
236 237 1.261238 CCCAAACCCTCTCTCTCGCT 61.261 60.000 0.00 0.00 0.00 4.93
237 238 1.219393 CCCAAACCCTCTCTCTCGC 59.781 63.158 0.00 0.00 0.00 5.03
238 239 0.247736 CACCCAAACCCTCTCTCTCG 59.752 60.000 0.00 0.00 0.00 4.04
239 240 1.002544 CACACCCAAACCCTCTCTCTC 59.997 57.143 0.00 0.00 0.00 3.20
240 241 1.059913 CACACCCAAACCCTCTCTCT 58.940 55.000 0.00 0.00 0.00 3.10
241 242 0.606673 GCACACCCAAACCCTCTCTC 60.607 60.000 0.00 0.00 0.00 3.20
242 243 1.352622 TGCACACCCAAACCCTCTCT 61.353 55.000 0.00 0.00 0.00 3.10
243 244 0.467290 TTGCACACCCAAACCCTCTC 60.467 55.000 0.00 0.00 0.00 3.20
244 245 0.468029 CTTGCACACCCAAACCCTCT 60.468 55.000 0.00 0.00 0.00 3.69
245 246 1.463553 CCTTGCACACCCAAACCCTC 61.464 60.000 0.00 0.00 0.00 4.30
246 247 1.457455 CCTTGCACACCCAAACCCT 60.457 57.895 0.00 0.00 0.00 4.34
247 248 2.506957 CCCTTGCACACCCAAACCC 61.507 63.158 0.00 0.00 0.00 4.11
248 249 1.334384 AACCCTTGCACACCCAAACC 61.334 55.000 0.00 0.00 0.00 3.27
249 250 0.179086 CAACCCTTGCACACCCAAAC 60.179 55.000 0.00 0.00 0.00 2.93
250 251 0.616111 ACAACCCTTGCACACCCAAA 60.616 50.000 0.00 0.00 0.00 3.28
251 252 1.000993 ACAACCCTTGCACACCCAA 59.999 52.632 0.00 0.00 0.00 4.12
252 253 1.454847 GACAACCCTTGCACACCCA 60.455 57.895 0.00 0.00 0.00 4.51
253 254 2.551912 CGACAACCCTTGCACACCC 61.552 63.158 0.00 0.00 0.00 4.61
254 255 2.551912 CCGACAACCCTTGCACACC 61.552 63.158 0.00 0.00 0.00 4.16
255 256 1.507141 CTCCGACAACCCTTGCACAC 61.507 60.000 0.00 0.00 0.00 3.82
256 257 1.227823 CTCCGACAACCCTTGCACA 60.228 57.895 0.00 0.00 0.00 4.57
257 258 1.966451 CCTCCGACAACCCTTGCAC 60.966 63.158 0.00 0.00 0.00 4.57
258 259 2.429930 CCTCCGACAACCCTTGCA 59.570 61.111 0.00 0.00 0.00 4.08
259 260 3.056328 GCCTCCGACAACCCTTGC 61.056 66.667 0.00 0.00 0.00 4.01
260 261 2.742372 CGCCTCCGACAACCCTTG 60.742 66.667 0.00 0.00 36.29 3.61
261 262 3.239253 ACGCCTCCGACAACCCTT 61.239 61.111 0.00 0.00 38.29 3.95
262 263 4.003788 CACGCCTCCGACAACCCT 62.004 66.667 0.00 0.00 38.29 4.34
271 272 4.357947 TCAGTCACGCACGCCTCC 62.358 66.667 0.00 0.00 0.00 4.30
272 273 3.106407 GTCAGTCACGCACGCCTC 61.106 66.667 0.00 0.00 0.00 4.70
273 274 3.848347 CTGTCAGTCACGCACGCCT 62.848 63.158 0.00 0.00 0.00 5.52
274 275 3.406361 CTGTCAGTCACGCACGCC 61.406 66.667 0.00 0.00 0.00 5.68
275 276 4.064491 GCTGTCAGTCACGCACGC 62.064 66.667 0.93 0.00 0.00 5.34
276 277 3.756677 CGCTGTCAGTCACGCACG 61.757 66.667 0.93 0.00 0.00 5.34
277 278 3.406361 CCGCTGTCAGTCACGCAC 61.406 66.667 0.93 0.00 0.00 5.34
278 279 3.841379 GACCGCTGTCAGTCACGCA 62.841 63.158 3.07 0.00 41.37 5.24
279 280 3.106407 GACCGCTGTCAGTCACGC 61.106 66.667 3.07 0.00 41.37 5.34
280 281 2.430921 GGACCGCTGTCAGTCACG 60.431 66.667 10.60 0.00 43.65 4.35
281 282 2.430921 CGGACCGCTGTCAGTCAC 60.431 66.667 10.60 0.00 43.65 3.67
282 283 3.680786 CCGGACCGCTGTCAGTCA 61.681 66.667 8.86 0.00 43.65 3.41
283 284 3.371063 TCCGGACCGCTGTCAGTC 61.371 66.667 8.86 0.00 43.65 3.51
284 285 3.681835 GTCCGGACCGCTGTCAGT 61.682 66.667 24.75 0.00 43.65 3.41
285 286 4.778415 CGTCCGGACCGCTGTCAG 62.778 72.222 28.52 8.24 43.65 3.51
299 300 4.699522 AGGGGCTTTGTCGGCGTC 62.700 66.667 6.85 0.72 0.00 5.19
301 302 3.976701 ATCAGGGGCTTTGTCGGCG 62.977 63.158 0.00 0.00 0.00 6.46
302 303 1.250840 AAATCAGGGGCTTTGTCGGC 61.251 55.000 0.00 0.00 0.00 5.54
303 304 0.527565 CAAATCAGGGGCTTTGTCGG 59.472 55.000 0.00 0.00 0.00 4.79
304 305 0.109132 GCAAATCAGGGGCTTTGTCG 60.109 55.000 0.00 0.00 35.33 4.35
305 306 1.260544 AGCAAATCAGGGGCTTTGTC 58.739 50.000 0.00 0.00 35.33 3.18
306 307 1.620323 GAAGCAAATCAGGGGCTTTGT 59.380 47.619 0.00 0.00 47.00 2.83
307 308 1.066645 GGAAGCAAATCAGGGGCTTTG 60.067 52.381 0.00 0.00 47.00 2.77
308 309 1.269958 GGAAGCAAATCAGGGGCTTT 58.730 50.000 0.00 0.00 47.00 3.51
310 311 1.000866 GGGAAGCAAATCAGGGGCT 59.999 57.895 0.00 0.00 40.14 5.19
311 312 2.418083 CGGGAAGCAAATCAGGGGC 61.418 63.158 0.00 0.00 0.00 5.80
312 313 0.611896 AACGGGAAGCAAATCAGGGG 60.612 55.000 0.00 0.00 0.00 4.79
313 314 0.811281 GAACGGGAAGCAAATCAGGG 59.189 55.000 0.00 0.00 0.00 4.45
314 315 0.447801 CGAACGGGAAGCAAATCAGG 59.552 55.000 0.00 0.00 0.00 3.86
315 316 0.179189 GCGAACGGGAAGCAAATCAG 60.179 55.000 0.00 0.00 0.00 2.90
316 317 1.873165 GCGAACGGGAAGCAAATCA 59.127 52.632 0.00 0.00 0.00 2.57
317 318 1.226018 CGCGAACGGGAAGCAAATC 60.226 57.895 0.00 0.00 34.97 2.17
318 319 1.964373 ACGCGAACGGGAAGCAAAT 60.964 52.632 15.93 0.00 46.04 2.32
319 320 2.589442 ACGCGAACGGGAAGCAAA 60.589 55.556 15.93 0.00 46.04 3.68
340 341 5.219226 TGTATTCGTGTGTTGACGTTTTT 57.781 34.783 0.00 0.00 40.34 1.94
341 342 4.861389 TGTATTCGTGTGTTGACGTTTT 57.139 36.364 0.00 0.00 40.34 2.43
342 343 4.861389 TTGTATTCGTGTGTTGACGTTT 57.139 36.364 0.00 0.00 40.34 3.60
343 344 4.861389 TTTGTATTCGTGTGTTGACGTT 57.139 36.364 0.00 0.00 40.34 3.99
344 345 4.330620 AGTTTTGTATTCGTGTGTTGACGT 59.669 37.500 0.00 0.00 40.34 4.34
345 346 4.664410 CAGTTTTGTATTCGTGTGTTGACG 59.336 41.667 0.00 0.00 40.83 4.35
366 367 3.430895 ACGTGTTTTACCATCTAACGCAG 59.569 43.478 0.00 0.00 33.17 5.18
369 370 3.059834 CGGACGTGTTTTACCATCTAACG 59.940 47.826 0.00 0.00 35.78 3.18
373 374 1.619827 TCCGGACGTGTTTTACCATCT 59.380 47.619 0.00 0.00 0.00 2.90
386 387 4.470170 TGTCGCACGATCCGGACG 62.470 66.667 20.16 20.16 0.00 4.79
399 400 3.622060 AAACCGCCCCATCCTGTCG 62.622 63.158 0.00 0.00 0.00 4.35
420 422 1.227973 GAGGATCGGCCATTCACCC 60.228 63.158 2.24 0.00 40.02 4.61
445 447 1.084370 GCGTGCCCAGTCACATAGTC 61.084 60.000 0.00 0.00 36.80 2.59
446 448 1.079127 GCGTGCCCAGTCACATAGT 60.079 57.895 0.00 0.00 36.80 2.12
447 449 1.079197 TGCGTGCCCAGTCACATAG 60.079 57.895 0.00 0.00 36.80 2.23
448 450 1.079197 CTGCGTGCCCAGTCACATA 60.079 57.895 0.00 0.00 36.80 2.29
449 451 2.359107 CTGCGTGCCCAGTCACAT 60.359 61.111 0.00 0.00 36.80 3.21
492 499 2.184579 GGACCTCGCCTTCCTTCG 59.815 66.667 0.00 0.00 0.00 3.79
516 523 1.897560 CTCACCTCGCCTTCCTTTTT 58.102 50.000 0.00 0.00 0.00 1.94
517 524 0.606673 GCTCACCTCGCCTTCCTTTT 60.607 55.000 0.00 0.00 0.00 2.27
520 527 2.604686 TGCTCACCTCGCCTTCCT 60.605 61.111 0.00 0.00 0.00 3.36
522 529 2.811317 CGTGCTCACCTCGCCTTC 60.811 66.667 0.00 0.00 0.00 3.46
538 545 2.180204 CGGTATTTCTGGCTGGCCG 61.180 63.158 7.14 2.52 39.42 6.13
549 557 0.392060 GGTCTGGTTCGGCGGTATTT 60.392 55.000 7.21 0.00 0.00 1.40
552 560 3.751246 CGGTCTGGTTCGGCGGTA 61.751 66.667 7.21 0.00 0.00 4.02
613 630 3.491342 GGAAGGAAGAAAGAAAGCCACT 58.509 45.455 0.00 0.00 0.00 4.00
702 729 0.629058 TCCCCTTCCTATTTGGTGGC 59.371 55.000 0.00 0.00 37.07 5.01
740 767 0.107654 GTGCTAGGCTAGGTTGGTGG 60.108 60.000 22.40 0.00 0.00 4.61
743 770 0.462759 GCTGTGCTAGGCTAGGTTGG 60.463 60.000 22.40 0.00 0.00 3.77
745 772 0.250513 GTGCTGTGCTAGGCTAGGTT 59.749 55.000 22.40 0.00 0.00 3.50
746 773 0.904865 TGTGCTGTGCTAGGCTAGGT 60.905 55.000 22.40 0.00 0.00 3.08
747 774 0.179089 CTGTGCTGTGCTAGGCTAGG 60.179 60.000 22.40 7.36 0.00 3.02
748 775 0.809241 GCTGTGCTGTGCTAGGCTAG 60.809 60.000 17.33 17.33 0.00 3.42
749 776 1.219124 GCTGTGCTGTGCTAGGCTA 59.781 57.895 0.00 0.00 0.00 3.93
750 777 2.046507 GCTGTGCTGTGCTAGGCT 60.047 61.111 0.00 0.00 0.00 4.58
751 778 2.359107 TGCTGTGCTGTGCTAGGC 60.359 61.111 0.00 0.00 0.00 3.93
752 779 1.296755 CTGTGCTGTGCTGTGCTAGG 61.297 60.000 0.00 0.00 0.00 3.02
753 780 1.909141 GCTGTGCTGTGCTGTGCTAG 61.909 60.000 0.00 0.00 0.00 3.42
754 781 1.962822 GCTGTGCTGTGCTGTGCTA 60.963 57.895 0.00 0.00 0.00 3.49
852 891 4.808364 GTGTTGTAATTTGGAGCTTTGCAA 59.192 37.500 0.00 0.00 0.00 4.08
974 1022 4.082523 ACCGTCACGCCTCCATGG 62.083 66.667 4.97 4.97 39.35 3.66
1346 1394 4.235762 AACTGACGGCTGCGGTGT 62.236 61.111 17.89 7.49 0.00 4.16
1356 1404 4.377897 AGAAGAGGTAAAACCAACTGACG 58.622 43.478 0.00 0.00 41.95 4.35
1377 1425 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1378 1426 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1379 1427 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1380 1428 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1381 1429 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1382 1430 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1383 1431 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1384 1432 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1385 1433 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1386 1434 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1387 1435 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1388 1436 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1389 1437 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1390 1438 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1391 1439 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1392 1440 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1393 1441 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1394 1442 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1395 1443 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1396 1444 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1397 1445 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1398 1446 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1399 1447 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
1400 1448 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
1401 1449 3.634448 ACGAGAGAGAGAGAGAGAGAGAG 59.366 52.174 0.00 0.00 0.00 3.20
1402 1450 3.632333 ACGAGAGAGAGAGAGAGAGAGA 58.368 50.000 0.00 0.00 0.00 3.10
1403 1451 3.549019 CGACGAGAGAGAGAGAGAGAGAG 60.549 56.522 0.00 0.00 0.00 3.20
1404 1452 2.357952 CGACGAGAGAGAGAGAGAGAGA 59.642 54.545 0.00 0.00 0.00 3.10
1405 1453 2.099263 ACGACGAGAGAGAGAGAGAGAG 59.901 54.545 0.00 0.00 0.00 3.20
1406 1454 2.097036 ACGACGAGAGAGAGAGAGAGA 58.903 52.381 0.00 0.00 0.00 3.10
1407 1455 2.193447 CACGACGAGAGAGAGAGAGAG 58.807 57.143 0.00 0.00 0.00 3.20
1408 1456 1.546923 ACACGACGAGAGAGAGAGAGA 59.453 52.381 0.00 0.00 0.00 3.10
1409 1457 1.658596 CACACGACGAGAGAGAGAGAG 59.341 57.143 0.00 0.00 0.00 3.20
1410 1458 1.001068 ACACACGACGAGAGAGAGAGA 59.999 52.381 0.00 0.00 0.00 3.10
1411 1459 1.127766 CACACACGACGAGAGAGAGAG 59.872 57.143 0.00 0.00 0.00 3.20
1412 1460 1.149148 CACACACGACGAGAGAGAGA 58.851 55.000 0.00 0.00 0.00 3.10
1413 1461 0.869068 ACACACACGACGAGAGAGAG 59.131 55.000 0.00 0.00 0.00 3.20
1414 1462 0.586802 CACACACACGACGAGAGAGA 59.413 55.000 0.00 0.00 0.00 3.10
1415 1463 0.308068 ACACACACACGACGAGAGAG 59.692 55.000 0.00 0.00 0.00 3.20
1416 1464 0.028902 CACACACACACGACGAGAGA 59.971 55.000 0.00 0.00 0.00 3.10
1417 1465 0.248498 ACACACACACACGACGAGAG 60.248 55.000 0.00 0.00 0.00 3.20
1418 1466 0.524604 CACACACACACACGACGAGA 60.525 55.000 0.00 0.00 0.00 4.04
1419 1467 0.800683 ACACACACACACACGACGAG 60.801 55.000 0.00 0.00 0.00 4.18
1420 1468 1.073768 CACACACACACACACGACGA 61.074 55.000 0.00 0.00 0.00 4.20
1421 1469 1.343484 CACACACACACACACGACG 59.657 57.895 0.00 0.00 0.00 5.12
1422 1470 0.094558 CACACACACACACACACGAC 59.905 55.000 0.00 0.00 0.00 4.34
1423 1471 0.319986 ACACACACACACACACACGA 60.320 50.000 0.00 0.00 0.00 4.35
1424 1472 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
1425 1473 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1426 1474 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1427 1475 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1437 1485 0.179166 CAAGCCACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
1439 1487 1.226660 GCAAGCCACACACACACAC 60.227 57.895 0.00 0.00 0.00 3.82
1776 2071 4.782019 TTGAACCAACATGTTATGAGCC 57.218 40.909 11.53 0.00 0.00 4.70
1777 2072 5.807011 GGATTTGAACCAACATGTTATGAGC 59.193 40.000 11.53 1.03 0.00 4.26
1778 2073 7.161773 AGGATTTGAACCAACATGTTATGAG 57.838 36.000 11.53 3.30 0.00 2.90
1779 2074 8.106462 TCTAGGATTTGAACCAACATGTTATGA 58.894 33.333 11.53 0.00 0.00 2.15
1780 2075 8.279970 TCTAGGATTTGAACCAACATGTTATG 57.720 34.615 11.53 8.20 0.00 1.90
1781 2076 7.557719 CCTCTAGGATTTGAACCAACATGTTAT 59.442 37.037 11.53 0.00 37.39 1.89
1782 2077 6.884295 CCTCTAGGATTTGAACCAACATGTTA 59.116 38.462 11.53 0.00 37.39 2.41
1783 2078 5.711976 CCTCTAGGATTTGAACCAACATGTT 59.288 40.000 4.92 4.92 37.39 2.71
1784 2079 5.014123 TCCTCTAGGATTTGAACCAACATGT 59.986 40.000 0.00 0.00 39.78 3.21
1785 2080 5.500234 TCCTCTAGGATTTGAACCAACATG 58.500 41.667 0.00 0.00 39.78 3.21
1786 2081 5.779241 TCCTCTAGGATTTGAACCAACAT 57.221 39.130 0.00 0.00 39.78 2.71
1787 2082 5.514834 CCTTCCTCTAGGATTTGAACCAACA 60.515 44.000 0.00 0.00 44.98 3.33
1788 2083 4.944317 CCTTCCTCTAGGATTTGAACCAAC 59.056 45.833 0.00 0.00 44.98 3.77
1789 2084 4.567747 GCCTTCCTCTAGGATTTGAACCAA 60.568 45.833 0.00 0.00 44.98 3.67
1790 2085 3.054361 GCCTTCCTCTAGGATTTGAACCA 60.054 47.826 0.00 0.00 44.98 3.67
2000 2297 5.116084 AGGCCATATTGAGCTTGTTCTTA 57.884 39.130 5.01 0.00 0.00 2.10
2221 2518 1.303561 GTGCATGCTCCACTTCCCA 60.304 57.895 20.33 0.00 0.00 4.37
2239 2536 1.804396 TTTCCAATGTGCACAGCCGG 61.804 55.000 25.84 22.78 0.00 6.13
2240 2537 0.031857 TTTTCCAATGTGCACAGCCG 59.968 50.000 25.84 14.99 0.00 5.52
2297 2594 2.509548 CCCTGAACACCTATTCATCCCA 59.490 50.000 0.00 0.00 37.93 4.37
2531 2829 7.226128 GCACTCTCATTTTCATATGATCACTCA 59.774 37.037 6.17 0.00 34.24 3.41
2726 3024 1.671850 CCGTACAGTGTAAGGTGCCAG 60.672 57.143 22.84 1.22 0.00 4.85
4046 4355 1.856265 GCTTTGAGGAGCCACAACCG 61.856 60.000 0.00 0.00 36.66 4.44
4437 4746 7.041107 GCTTTAACTATGGCATTTTCATCCAA 58.959 34.615 4.78 0.00 33.04 3.53
4651 4960 4.401519 CGACATCTCTCTTGGGGTAAAGTA 59.598 45.833 0.00 0.00 0.00 2.24
4657 4966 0.252284 ACCGACATCTCTCTTGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
4673 4983 8.125728 ACAAACAAAAGTAATTTTCATCACCG 57.874 30.769 0.00 0.00 0.00 4.94
5056 5368 1.834263 ACTTCAGACTGTAGGGCATCC 59.166 52.381 13.03 0.00 0.00 3.51
5422 5734 1.338020 CATTAGCAATCCTTTCCGGCC 59.662 52.381 0.00 0.00 0.00 6.13
5569 5881 4.276058 TGCTCTGAATGTGATGAACTCA 57.724 40.909 0.00 0.00 0.00 3.41
6175 6497 3.102052 CAAGCAGACATTTGGTTGCTT 57.898 42.857 14.26 14.26 45.82 3.91
6196 6518 6.243148 GGATTTCCCAGTAAACAAGACCTAA 58.757 40.000 0.00 0.00 34.14 2.69
6253 6575 2.621055 TGGCGAAAAATCATATTCCCCG 59.379 45.455 0.00 0.00 0.00 5.73
6467 6789 5.254267 TGGGACATTGGGGATTTCTACTTAA 59.746 40.000 0.00 0.00 0.00 1.85
6500 6822 1.459450 GCAGAGAGAACTCGAGAGGT 58.541 55.000 21.68 3.30 46.64 3.85
7004 7342 0.679960 AGCATGCAAGCAGCTGATCA 60.680 50.000 20.43 6.90 45.94 2.92
7134 8289 0.545171 CCATGCAGGTCCACATCTCT 59.455 55.000 0.00 0.00 0.00 3.10
7257 8412 0.523072 CGATCAACCAAGCCAACAGG 59.477 55.000 0.00 0.00 0.00 4.00
7271 8426 0.839277 ATTGCCCATGTCCTCGATCA 59.161 50.000 0.00 0.00 0.00 2.92
7333 8489 5.669164 TTGCACTTTTTAGTTGGGACTTT 57.331 34.783 0.00 0.00 37.33 2.66
7529 8691 6.457355 ACGTACAAATACAGGTGACATAACA 58.543 36.000 0.00 0.00 0.00 2.41
7712 8874 5.647658 TGCGATGAACCATTTCAAAGAGTAT 59.352 36.000 0.00 0.00 45.01 2.12
7750 8916 8.527810 AGACTGAACCATTTTTAACAAAAGACA 58.472 29.630 0.00 0.00 35.30 3.41
7870 9037 5.204409 TCAAGCATCTTCAGTTTTGCATT 57.796 34.783 0.00 0.00 37.56 3.56
7941 9108 4.886247 TTTTGTTCCGAACAGTAAGTGG 57.114 40.909 13.51 0.00 43.27 4.00
7949 9116 3.358118 AGGTTCCTTTTTGTTCCGAACA 58.642 40.909 9.99 9.99 40.21 3.18
8012 9179 2.487934 AGCGGAACTTGCTGCATATAG 58.512 47.619 1.84 0.00 42.14 1.31
8087 9254 6.062749 TCTACAGTTCTACGCTCAAGGATAT 58.937 40.000 0.00 0.00 0.00 1.63
8198 9367 6.617782 TCTGATCCTCAAATCTGATATCCC 57.382 41.667 0.00 0.00 31.17 3.85
8235 9404 4.249661 CTCTAGCCAAGTTCTCTGAAACC 58.750 47.826 0.00 0.00 0.00 3.27
8299 9468 4.247380 CCGCATCTCCTGAGGGCC 62.247 72.222 0.00 0.00 40.87 5.80
8488 9657 8.839947 TCATTGTAATGTTCATTAATTGCTCG 57.160 30.769 6.79 0.00 37.65 5.03
8583 9752 1.846007 ACACAACAAGGCCAAACTCA 58.154 45.000 5.01 0.00 0.00 3.41
8594 9763 2.036733 CGGAGGGAGTAGAACACAACAA 59.963 50.000 0.00 0.00 0.00 2.83
8607 9776 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
8608 9777 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
8609 9778 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
8610 9779 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
8611 9780 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
8612 9781 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
8613 9782 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
8614 9783 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
8647 9816 8.680001 ACCCAACTTTGTACTAACTTTGTAAAG 58.320 33.333 2.94 2.94 41.73 1.85
8648 9817 8.578448 ACCCAACTTTGTACTAACTTTGTAAA 57.422 30.769 0.00 0.00 0.00 2.01
8649 9818 7.828223 TGACCCAACTTTGTACTAACTTTGTAA 59.172 33.333 0.00 0.00 0.00 2.41
8650 9819 7.337167 TGACCCAACTTTGTACTAACTTTGTA 58.663 34.615 0.00 0.00 0.00 2.41
8651 9820 6.181908 TGACCCAACTTTGTACTAACTTTGT 58.818 36.000 0.00 0.00 0.00 2.83
8652 9821 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.00 0.00 2.77
8653 9822 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
8654 9823 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
8655 9824 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
8656 9825 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
8657 9826 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
8658 9827 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
8659 9828 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
8660 9829 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
8661 9830 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
8662 9831 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
8663 9832 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
8664 9833 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
8665 9834 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
8666 9835 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
8667 9836 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
8668 9837 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
8669 9838 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
8670 9839 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
8671 9840 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
8672 9841 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
8673 9842 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
8674 9843 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
8675 9844 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
8676 9845 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
8677 9846 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
8678 9847 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
8679 9848 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
8680 9849 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
8681 9850 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
8682 9851 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
8683 9852 0.252103 AAGCTACTCCCTCCGTTCCA 60.252 55.000 0.00 0.00 0.00 3.53
8684 9853 1.408340 GTAAGCTACTCCCTCCGTTCC 59.592 57.143 0.00 0.00 0.00 3.62
8685 9854 2.097825 TGTAAGCTACTCCCTCCGTTC 58.902 52.381 0.00 0.00 0.00 3.95
8686 9855 2.226962 TGTAAGCTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
8687 9856 2.456073 ATGTAAGCTACTCCCTCCGT 57.544 50.000 0.00 0.00 0.00 4.69
8688 9857 2.693591 TGAATGTAAGCTACTCCCTCCG 59.306 50.000 0.00 0.00 0.00 4.63
8689 9858 4.965200 ATGAATGTAAGCTACTCCCTCC 57.035 45.455 0.00 0.00 0.00 4.30
8690 9859 6.406692 TGTATGAATGTAAGCTACTCCCTC 57.593 41.667 0.00 0.00 0.00 4.30
8691 9860 6.808321 TTGTATGAATGTAAGCTACTCCCT 57.192 37.500 0.00 0.00 0.00 4.20
8692 9861 6.821665 TGTTTGTATGAATGTAAGCTACTCCC 59.178 38.462 0.00 0.00 0.00 4.30
8693 9862 7.843490 TGTTTGTATGAATGTAAGCTACTCC 57.157 36.000 0.00 0.00 0.00 3.85
8695 9864 9.893305 GTTTTGTTTGTATGAATGTAAGCTACT 57.107 29.630 0.00 0.00 0.00 2.57
8696 9865 9.672086 TGTTTTGTTTGTATGAATGTAAGCTAC 57.328 29.630 0.00 0.00 0.00 3.58
8698 9867 9.593134 TTTGTTTTGTTTGTATGAATGTAAGCT 57.407 25.926 0.00 0.00 0.00 3.74
8710 9879 9.930693 AAATCTAACCTGTTTGTTTTGTTTGTA 57.069 25.926 0.00 0.00 0.00 2.41
8791 9965 8.187480 TGCGTTGAATTAATTGTGTGCTATATT 58.813 29.630 5.17 0.00 0.00 1.28
9020 10200 7.233348 AGTCAAGGATCATGGCTTTTCTTTTAA 59.767 33.333 0.00 0.00 25.09 1.52
9125 10306 7.771927 AGACATGGAGAAGTGAAATGAAAAT 57.228 32.000 0.00 0.00 0.00 1.82
9155 10336 2.158623 ACAGGTGAACATTGAGAGCCAA 60.159 45.455 0.00 0.00 39.41 4.52
9175 10356 1.745864 TCGAGAGAGGGTGCGAGAC 60.746 63.158 0.00 0.00 34.84 3.36
9202 10383 5.178096 TGGATGTGCAAAAAGAGAGGATA 57.822 39.130 0.00 0.00 0.00 2.59
9237 10418 0.908198 AGGACAGAAGGATGAGTGGC 59.092 55.000 0.00 0.00 0.00 5.01
9240 10421 3.756082 AGAGAGGACAGAAGGATGAGT 57.244 47.619 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.