Multiple sequence alignment - TraesCS4D01G164700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G164700 chr4D 100.000 3907 0 0 1 3907 266786782 266782876 0.000000e+00 7215.0
1 TraesCS4D01G164700 chr4D 93.023 43 1 1 3460 3502 49245751 49245711 1.170000e-05 62.1
2 TraesCS4D01G164700 chr4A 96.296 2241 52 11 163 2382 279468161 279470391 0.000000e+00 3650.0
3 TraesCS4D01G164700 chr4A 98.551 552 8 0 2520 3071 279470387 279470938 0.000000e+00 976.0
4 TraesCS4D01G164700 chr4A 91.560 391 16 7 3096 3469 279470936 279471326 1.240000e-144 523.0
5 TraesCS4D01G164700 chr4A 90.959 365 13 8 3499 3863 279471413 279471757 1.270000e-129 473.0
6 TraesCS4D01G164700 chr4A 93.007 143 9 1 54 196 477881748 477881889 1.420000e-49 207.0
7 TraesCS4D01G164700 chr4A 87.952 83 5 1 1 83 279468034 279468111 4.160000e-15 93.5
8 TraesCS4D01G164700 chr7A 94.245 139 8 0 58 196 166489304 166489442 3.060000e-51 213.0
9 TraesCS4D01G164700 chr7A 86.525 141 19 0 2381 2521 727721307 727721447 5.230000e-34 156.0
10 TraesCS4D01G164700 chr6A 96.850 127 4 0 63 189 457399355 457399481 3.060000e-51 213.0
11 TraesCS4D01G164700 chr6A 93.182 44 1 1 3460 3503 108251274 108251315 3.260000e-06 63.9
12 TraesCS4D01G164700 chr3B 93.662 142 8 1 54 195 40625387 40625527 1.100000e-50 211.0
13 TraesCS4D01G164700 chr1B 93.056 144 10 0 57 200 56890711 56890854 1.100000e-50 211.0
14 TraesCS4D01G164700 chr1B 94.161 137 7 1 61 196 167585699 167585563 1.420000e-49 207.0
15 TraesCS4D01G164700 chr1B 95.349 43 0 1 3460 3502 531203009 531203049 2.520000e-07 67.6
16 TraesCS4D01G164700 chr5A 94.815 135 6 1 55 189 136511824 136511691 3.960000e-50 209.0
17 TraesCS4D01G164700 chr5A 93.617 47 0 2 3460 3506 410510034 410509991 2.520000e-07 67.6
18 TraesCS4D01G164700 chr5B 93.571 140 8 1 59 197 482199757 482199618 1.420000e-49 207.0
19 TraesCS4D01G164700 chr5B 89.809 157 12 3 59 211 275027453 275027297 8.560000e-47 198.0
20 TraesCS4D01G164700 chr5B 90.698 43 3 1 2369 2410 57704984 57705026 5.450000e-04 56.5
21 TraesCS4D01G164700 chr2B 89.726 146 12 3 2381 2525 154722640 154722497 2.400000e-42 183.0
22 TraesCS4D01G164700 chr2B 90.141 142 13 1 2381 2521 429251293 429251434 2.400000e-42 183.0
23 TraesCS4D01G164700 chr2B 93.333 45 0 2 3460 3503 546204129 546204087 3.260000e-06 63.9
24 TraesCS4D01G164700 chr7D 88.591 149 17 0 2378 2526 38730166 38730018 8.620000e-42 182.0
25 TraesCS4D01G164700 chr7D 95.506 89 4 0 285 373 141292084 141292172 4.070000e-30 143.0
26 TraesCS4D01G164700 chr6B 88.235 153 11 2 2379 2525 539539449 539539298 4.010000e-40 176.0
27 TraesCS4D01G164700 chr6B 88.800 125 8 1 2379 2497 539539618 539539494 8.750000e-32 148.0
28 TraesCS4D01G164700 chr6B 93.333 45 1 1 3459 3503 6167220 6167262 9.060000e-07 65.8
29 TraesCS4D01G164700 chr2D 87.324 142 16 2 2381 2521 636425160 636425020 1.120000e-35 161.0
30 TraesCS4D01G164700 chr2D 94.565 92 5 0 289 380 449513661 449513570 4.070000e-30 143.0
31 TraesCS4D01G164700 chr2D 95.506 89 4 0 289 377 619321093 619321005 4.070000e-30 143.0
32 TraesCS4D01G164700 chr2D 91.304 92 8 0 2429 2520 107918501 107918410 4.100000e-25 126.0
33 TraesCS4D01G164700 chr2D 95.455 44 0 1 3460 3503 165479205 165479164 7.000000e-08 69.4
34 TraesCS4D01G164700 chr2D 93.023 43 1 1 3460 3502 2738062 2738022 1.170000e-05 62.1
35 TraesCS4D01G164700 chr1D 86.207 145 20 0 2381 2525 241230778 241230922 1.450000e-34 158.0
36 TraesCS4D01G164700 chr1D 96.591 88 2 1 287 374 97862658 97862744 1.130000e-30 145.0
37 TraesCS4D01G164700 chr1D 93.023 43 1 1 3460 3502 481696688 481696728 1.170000e-05 62.1
38 TraesCS4D01G164700 chr5D 96.552 87 3 0 289 375 62715158 62715244 1.130000e-30 145.0
39 TraesCS4D01G164700 chr5D 93.684 95 5 1 279 373 111788737 111788644 1.460000e-29 141.0
40 TraesCS4D01G164700 chr5D 95.455 88 4 0 286 373 411995029 411995116 1.460000e-29 141.0
41 TraesCS4D01G164700 chr5D 100.000 29 0 0 3458 3486 465372779 465372751 2.000000e-03 54.7
42 TraesCS4D01G164700 chr6D 94.624 93 4 1 282 374 433443729 433443820 4.070000e-30 143.0
43 TraesCS4D01G164700 chr6D 95.349 43 0 1 3460 3502 114156790 114156750 2.520000e-07 67.6
44 TraesCS4D01G164700 chr2A 84.028 144 23 0 2378 2521 394659145 394659288 5.260000e-29 139.0
45 TraesCS4D01G164700 chr2A 88.679 53 2 3 3460 3511 416012156 416012107 1.170000e-05 62.1
46 TraesCS4D01G164700 chr1A 84.028 144 23 0 2381 2524 558148108 558147965 5.260000e-29 139.0
47 TraesCS4D01G164700 chr1A 95.349 43 0 1 3461 3503 58275921 58275881 2.520000e-07 67.6
48 TraesCS4D01G164700 chr1A 96.970 33 1 0 3460 3492 516456698 516456730 5.450000e-04 56.5
49 TraesCS4D01G164700 chr4B 93.671 79 5 0 2447 2525 171652031 171651953 6.860000e-23 119.0
50 TraesCS4D01G164700 chr3D 95.349 43 0 1 3460 3502 611532905 611532945 2.520000e-07 67.6
51 TraesCS4D01G164700 chr3D 93.023 43 1 1 3460 3502 97920896 97920856 1.170000e-05 62.1
52 TraesCS4D01G164700 chr7B 97.297 37 1 0 3456 3492 34675443 34675479 3.260000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G164700 chr4D 266782876 266786782 3906 True 7215.0 7215 100.0000 1 3907 1 chr4D.!!$R2 3906
1 TraesCS4D01G164700 chr4A 279468034 279471757 3723 False 1143.1 3650 93.0636 1 3863 5 chr4A.!!$F2 3862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 241 0.850100 TTCTCCCCTTTCAACCTGCA 59.150 50.0 0.0 0.0 0.00 4.41 F
1225 1231 0.107752 TTGTGCTGCTCCATCGCATA 60.108 50.0 0.0 0.0 39.52 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1810 0.040425 GTCGACATGTTGGTGTTGGC 60.040 55.0 11.55 0.0 34.81 4.52 R
3089 3111 0.175760 TGCTACAGAATGGCGACTCC 59.824 55.0 0.00 0.0 43.62 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.619177 GCTCAGCTCATGATTTGCTCAT 59.381 45.455 5.03 0.00 45.78 2.90
40 41 3.304123 GCTCAGCTCATGATTTGCTCATC 60.304 47.826 5.03 0.00 42.91 2.92
41 42 4.130857 CTCAGCTCATGATTTGCTCATCT 58.869 43.478 5.03 0.00 42.91 2.90
42 43 4.524053 TCAGCTCATGATTTGCTCATCTT 58.476 39.130 5.03 0.00 42.91 2.40
43 44 5.677567 TCAGCTCATGATTTGCTCATCTTA 58.322 37.500 5.03 0.00 42.91 2.10
55 56 9.766277 GATTTGCTCATCTTAAGAGTAAAGTTG 57.234 33.333 11.53 2.64 45.96 3.16
70 71 7.289549 AGAGTAAAGTTGTGTTACTACTCCCTT 59.710 37.037 5.43 0.00 40.93 3.95
71 72 7.440198 AGTAAAGTTGTGTTACTACTCCCTTC 58.560 38.462 0.00 0.00 39.47 3.46
76 77 2.086869 TGTTACTACTCCCTTCGTCCG 58.913 52.381 0.00 0.00 0.00 4.79
83 84 3.242549 ACTCCCTTCGTCCGAAAATAC 57.757 47.619 3.52 0.00 33.34 1.89
84 85 2.830321 ACTCCCTTCGTCCGAAAATACT 59.170 45.455 3.52 0.00 33.34 2.12
89 90 3.991773 CCTTCGTCCGAAAATACTTGTCA 59.008 43.478 3.52 0.00 33.34 3.58
91 92 5.220416 CCTTCGTCCGAAAATACTTGTCATC 60.220 44.000 3.52 0.00 33.34 2.92
93 94 5.231702 TCGTCCGAAAATACTTGTCATCAA 58.768 37.500 0.00 0.00 0.00 2.57
94 95 5.697178 TCGTCCGAAAATACTTGTCATCAAA 59.303 36.000 0.00 0.00 32.87 2.69
95 96 6.203145 TCGTCCGAAAATACTTGTCATCAAAA 59.797 34.615 0.00 0.00 32.87 2.44
97 98 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
99 100 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
100 101 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
101 102 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
104 105 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
105 106 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
106 107 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
107 108 7.555087 ACTTGTCATCAAAATGGACAAAAAGA 58.445 30.769 7.70 0.00 34.98 2.52
109 110 7.345422 TGTCATCAAAATGGACAAAAAGAGA 57.655 32.000 0.00 0.00 33.42 3.10
110 111 7.954835 TGTCATCAAAATGGACAAAAAGAGAT 58.045 30.769 0.00 0.00 33.42 2.75
111 112 7.868922 TGTCATCAAAATGGACAAAAAGAGATG 59.131 33.333 0.00 0.00 33.42 2.90
114 115 9.865321 CATCAAAATGGACAAAAAGAGATGTAT 57.135 29.630 0.00 0.00 0.00 2.29
116 117 9.300681 TCAAAATGGACAAAAAGAGATGTATCT 57.699 29.630 0.00 0.00 40.50 1.98
145 146 9.717942 AACTAAAATACATCTAGATGCATCTCC 57.282 33.333 31.92 3.85 42.39 3.71
146 147 9.099071 ACTAAAATACATCTAGATGCATCTCCT 57.901 33.333 31.92 15.14 42.39 3.69
147 148 9.941325 CTAAAATACATCTAGATGCATCTCCTT 57.059 33.333 31.92 14.95 42.39 3.36
149 150 9.638176 AAAATACATCTAGATGCATCTCCTTTT 57.362 29.630 31.92 20.97 42.39 2.27
153 154 7.393216 ACATCTAGATGCATCTCCTTTTATCC 58.607 38.462 31.92 0.00 42.39 2.59
154 155 7.016957 ACATCTAGATGCATCTCCTTTTATCCA 59.983 37.037 31.92 10.19 42.39 3.41
155 156 7.565190 TCTAGATGCATCTCCTTTTATCCAT 57.435 36.000 31.92 6.97 38.32 3.41
156 157 7.982252 TCTAGATGCATCTCCTTTTATCCATT 58.018 34.615 31.92 6.52 38.32 3.16
157 158 8.443176 TCTAGATGCATCTCCTTTTATCCATTT 58.557 33.333 31.92 5.86 38.32 2.32
158 159 7.909485 AGATGCATCTCCTTTTATCCATTTT 57.091 32.000 23.75 0.00 29.30 1.82
160 161 9.425248 AGATGCATCTCCTTTTATCCATTTTAA 57.575 29.630 23.75 0.00 29.30 1.52
178 179 7.700656 CCATTTTAATGACAAGTATTTCCGGAC 59.299 37.037 1.83 0.00 38.70 4.79
230 231 1.280421 GCAGTGTCAGATTCTCCCCTT 59.720 52.381 0.00 0.00 0.00 3.95
240 241 0.850100 TTCTCCCCTTTCAACCTGCA 59.150 50.000 0.00 0.00 0.00 4.41
247 248 1.268539 CCTTTCAACCTGCACGTGTTC 60.269 52.381 18.38 1.32 0.00 3.18
283 284 2.021457 ACCATTTGCGCCTATGTTACC 58.979 47.619 4.18 0.00 0.00 2.85
311 312 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
510 512 1.202879 AGACCATGCTTCCCAAAACGA 60.203 47.619 0.00 0.00 0.00 3.85
584 586 3.691118 TGCACTCCAAATAGCACTCATTC 59.309 43.478 0.00 0.00 31.05 2.67
642 644 5.239525 ACCTAACATCAGCAAGTTCTTTGAC 59.760 40.000 0.00 0.00 39.21 3.18
664 666 1.948834 CTTGTGATGTGTTGGTGCAGA 59.051 47.619 0.00 0.00 0.00 4.26
687 689 8.261522 CAGATCTAGTAAGAACTAAAAAGGCCT 58.738 37.037 0.00 0.00 37.75 5.19
753 755 6.051717 GCTCTTATAATTTCTGCTCCACTCA 58.948 40.000 0.00 0.00 0.00 3.41
765 767 2.304056 CCACTCACCATCAGGGCCT 61.304 63.158 0.00 0.00 42.05 5.19
816 818 8.665685 GTTTCCAATCATGTAACGAGACTAATT 58.334 33.333 0.00 0.00 0.00 1.40
1017 1023 2.182842 CATGGCCTCGGCTGCTTAC 61.183 63.158 3.32 0.00 41.60 2.34
1097 1103 2.535984 CTGAACTTGTCGGCGATCATAC 59.464 50.000 14.79 0.00 0.00 2.39
1098 1104 2.094442 TGAACTTGTCGGCGATCATACA 60.094 45.455 14.79 3.01 0.00 2.29
1125 1131 6.479660 AGCTTACACAAAAATCAAATGTGGTG 59.520 34.615 9.61 0.00 46.67 4.17
1161 1167 0.389817 GCGAACTTTTGGAATGCCCC 60.390 55.000 0.00 0.00 0.00 5.80
1219 1225 0.245539 GTGCATTTGTGCTGCTCCAT 59.754 50.000 0.00 0.00 40.34 3.41
1225 1231 0.107752 TTGTGCTGCTCCATCGCATA 60.108 50.000 0.00 0.00 39.52 3.14
1458 1464 0.249447 GCAAGCCAAGGGTTCACAAC 60.249 55.000 0.00 0.00 33.16 3.32
1485 1491 3.872240 GCCCAACTTGTAGGCATGAACTA 60.872 47.826 0.00 0.00 46.34 2.24
1614 1620 0.327259 AGCATGAGTCACAGTGCCAT 59.673 50.000 12.50 0.00 35.35 4.40
1713 1719 9.419297 CATTTGAAAGATGATCACAAAGTTGAT 57.581 29.630 12.31 0.00 39.02 2.57
1719 1725 7.024340 AGATGATCACAAAGTTGATATGCAC 57.976 36.000 0.00 0.00 36.30 4.57
1722 1728 5.706833 TGATCACAAAGTTGATATGCACAGT 59.293 36.000 0.00 0.00 36.30 3.55
1804 1810 4.625742 CCTGGATGCTTACGGTATTAATCG 59.374 45.833 0.00 0.00 0.00 3.34
1805 1811 3.991773 TGGATGCTTACGGTATTAATCGC 59.008 43.478 0.00 0.00 0.00 4.58
1820 1826 0.881118 ATCGCCAACACCAACATGTC 59.119 50.000 0.00 0.00 30.55 3.06
1848 1854 8.680903 ACTAAGAATTTCCATGTAGCATCTTTG 58.319 33.333 5.86 6.64 0.00 2.77
1851 1857 8.757982 AGAATTTCCATGTAGCATCTTTGTAT 57.242 30.769 0.00 0.00 0.00 2.29
1957 1963 2.606449 CCTGTGTGGTGGGGGTTT 59.394 61.111 0.00 0.00 0.00 3.27
2019 2025 5.473504 TGATTAGTTCCCTTTCTGCAAAGAC 59.526 40.000 0.00 0.00 41.60 3.01
2158 2164 6.589523 TGTCATGCAGTATAAAACAAAATGGC 59.410 34.615 0.00 0.00 0.00 4.40
2200 2206 5.894298 TGGACCATAATAGTTGCTCATCT 57.106 39.130 0.00 0.00 0.00 2.90
2238 2260 1.427809 CCCAGATCCACCTGCATCTA 58.572 55.000 0.00 0.00 32.97 1.98
2331 2353 9.533253 CTTTACATTTCCTCAATTCACTGTTTT 57.467 29.630 0.00 0.00 0.00 2.43
2393 2415 3.178539 GCTAAGGCTGTGTTCGGC 58.821 61.111 0.00 0.00 44.51 5.54
2394 2416 1.671054 GCTAAGGCTGTGTTCGGCA 60.671 57.895 0.00 0.00 46.81 5.69
2395 2417 1.234615 GCTAAGGCTGTGTTCGGCAA 61.235 55.000 0.00 0.00 46.81 4.52
2396 2418 1.453155 CTAAGGCTGTGTTCGGCAAT 58.547 50.000 0.00 0.00 46.81 3.56
2397 2419 1.398390 CTAAGGCTGTGTTCGGCAATC 59.602 52.381 0.00 0.00 46.81 2.67
2398 2420 1.244019 AAGGCTGTGTTCGGCAATCC 61.244 55.000 0.00 0.00 46.81 3.01
2399 2421 1.675641 GGCTGTGTTCGGCAATCCT 60.676 57.895 1.58 0.00 46.81 3.24
2400 2422 1.648467 GGCTGTGTTCGGCAATCCTC 61.648 60.000 1.58 0.00 46.81 3.71
2401 2423 0.674895 GCTGTGTTCGGCAATCCTCT 60.675 55.000 0.00 0.00 44.61 3.69
2402 2424 1.081892 CTGTGTTCGGCAATCCTCTG 58.918 55.000 0.00 0.00 0.00 3.35
2403 2425 0.955428 TGTGTTCGGCAATCCTCTGC 60.955 55.000 0.00 0.00 41.85 4.26
2404 2426 0.674895 GTGTTCGGCAATCCTCTGCT 60.675 55.000 0.00 0.00 42.25 4.24
2405 2427 0.391661 TGTTCGGCAATCCTCTGCTC 60.392 55.000 0.00 0.00 42.25 4.26
2406 2428 1.092345 GTTCGGCAATCCTCTGCTCC 61.092 60.000 0.00 0.00 42.25 4.70
2407 2429 1.267574 TTCGGCAATCCTCTGCTCCT 61.268 55.000 0.00 0.00 42.25 3.69
2408 2430 1.222936 CGGCAATCCTCTGCTCCTT 59.777 57.895 0.00 0.00 42.25 3.36
2409 2431 0.813210 CGGCAATCCTCTGCTCCTTC 60.813 60.000 0.00 0.00 42.25 3.46
2410 2432 0.254178 GGCAATCCTCTGCTCCTTCA 59.746 55.000 0.00 0.00 42.25 3.02
2411 2433 1.377536 GCAATCCTCTGCTCCTTCAC 58.622 55.000 0.00 0.00 39.34 3.18
2412 2434 2.016096 GCAATCCTCTGCTCCTTCACC 61.016 57.143 0.00 0.00 39.34 4.02
2413 2435 1.280133 CAATCCTCTGCTCCTTCACCA 59.720 52.381 0.00 0.00 0.00 4.17
2414 2436 1.202330 ATCCTCTGCTCCTTCACCAG 58.798 55.000 0.00 0.00 0.00 4.00
2415 2437 0.906756 TCCTCTGCTCCTTCACCAGG 60.907 60.000 0.00 0.00 45.64 4.45
2416 2438 1.601171 CTCTGCTCCTTCACCAGGG 59.399 63.158 0.00 0.00 44.12 4.45
2417 2439 0.906756 CTCTGCTCCTTCACCAGGGA 60.907 60.000 0.00 0.00 44.12 4.20
2420 2442 2.581354 CTCCTTCACCAGGGAGCG 59.419 66.667 0.00 0.00 44.12 5.03
2421 2443 3.003173 TCCTTCACCAGGGAGCGG 61.003 66.667 0.00 0.00 44.12 5.52
2422 2444 3.003173 CCTTCACCAGGGAGCGGA 61.003 66.667 0.00 0.00 39.39 5.54
2423 2445 2.581354 CTTCACCAGGGAGCGGAG 59.419 66.667 0.00 0.00 0.00 4.63
2443 2465 4.722700 CCCGGAGCACCCTGTTGG 62.723 72.222 0.73 0.00 41.37 3.77
2452 2474 4.785453 CCCTGTTGGCCGCTCCTC 62.785 72.222 0.00 0.00 35.26 3.71
2453 2475 4.020617 CCTGTTGGCCGCTCCTCA 62.021 66.667 0.00 0.00 35.26 3.86
2454 2476 2.032528 CTGTTGGCCGCTCCTCAA 59.967 61.111 0.00 0.00 35.26 3.02
2455 2477 1.600636 CTGTTGGCCGCTCCTCAAA 60.601 57.895 0.00 0.00 35.26 2.69
2456 2478 0.962356 CTGTTGGCCGCTCCTCAAAT 60.962 55.000 0.00 0.00 35.26 2.32
2457 2479 0.539438 TGTTGGCCGCTCCTCAAATT 60.539 50.000 0.00 0.00 35.26 1.82
2458 2480 0.603065 GTTGGCCGCTCCTCAAATTT 59.397 50.000 0.00 0.00 35.26 1.82
2459 2481 1.816224 GTTGGCCGCTCCTCAAATTTA 59.184 47.619 0.00 0.00 35.26 1.40
2460 2482 2.427095 GTTGGCCGCTCCTCAAATTTAT 59.573 45.455 0.00 0.00 35.26 1.40
2461 2483 3.569194 TGGCCGCTCCTCAAATTTATA 57.431 42.857 0.00 0.00 35.26 0.98
2462 2484 3.211045 TGGCCGCTCCTCAAATTTATAC 58.789 45.455 0.00 0.00 35.26 1.47
2463 2485 3.118038 TGGCCGCTCCTCAAATTTATACT 60.118 43.478 0.00 0.00 35.26 2.12
2464 2486 3.251004 GGCCGCTCCTCAAATTTATACTG 59.749 47.826 0.00 0.00 0.00 2.74
2465 2487 3.877508 GCCGCTCCTCAAATTTATACTGT 59.122 43.478 0.00 0.00 0.00 3.55
2466 2488 5.054477 GCCGCTCCTCAAATTTATACTGTA 58.946 41.667 0.00 0.00 0.00 2.74
2467 2489 5.701290 GCCGCTCCTCAAATTTATACTGTAT 59.299 40.000 5.53 5.53 0.00 2.29
2468 2490 6.347725 GCCGCTCCTCAAATTTATACTGTATG 60.348 42.308 10.51 0.00 0.00 2.39
2469 2491 6.347725 CCGCTCCTCAAATTTATACTGTATGC 60.348 42.308 10.51 0.28 0.00 3.14
2470 2492 6.347725 CGCTCCTCAAATTTATACTGTATGCC 60.348 42.308 10.51 0.00 0.00 4.40
2471 2493 6.347725 GCTCCTCAAATTTATACTGTATGCCG 60.348 42.308 10.51 0.00 0.00 5.69
2472 2494 5.468746 TCCTCAAATTTATACTGTATGCCGC 59.531 40.000 10.51 0.00 0.00 6.53
2473 2495 5.470098 CCTCAAATTTATACTGTATGCCGCT 59.530 40.000 10.51 0.00 0.00 5.52
2474 2496 6.347725 CCTCAAATTTATACTGTATGCCGCTC 60.348 42.308 10.51 0.00 0.00 5.03
2475 2497 5.468746 TCAAATTTATACTGTATGCCGCTCC 59.531 40.000 10.51 0.00 0.00 4.70
2476 2498 2.717580 TTATACTGTATGCCGCTCCG 57.282 50.000 10.51 0.00 0.00 4.63
2477 2499 0.242825 TATACTGTATGCCGCTCCGC 59.757 55.000 10.51 0.00 0.00 5.54
2478 2500 1.464376 ATACTGTATGCCGCTCCGCT 61.464 55.000 0.00 0.00 0.00 5.52
2479 2501 2.071844 TACTGTATGCCGCTCCGCTC 62.072 60.000 0.00 0.00 0.00 5.03
2480 2502 4.221422 TGTATGCCGCTCCGCTCC 62.221 66.667 0.00 0.00 0.00 4.70
2497 2519 2.494918 CGCAGGGGAGTTACGGAG 59.505 66.667 0.00 0.00 0.00 4.63
2498 2520 2.187163 GCAGGGGAGTTACGGAGC 59.813 66.667 0.00 0.00 0.00 4.70
2499 2521 2.494918 CAGGGGAGTTACGGAGCG 59.505 66.667 0.00 0.00 0.00 5.03
2500 2522 2.758737 AGGGGAGTTACGGAGCGG 60.759 66.667 0.00 0.00 0.00 5.52
2501 2523 2.757099 GGGGAGTTACGGAGCGGA 60.757 66.667 0.00 0.00 0.00 5.54
2502 2524 2.783288 GGGGAGTTACGGAGCGGAG 61.783 68.421 0.00 0.00 0.00 4.63
2503 2525 2.783288 GGGAGTTACGGAGCGGAGG 61.783 68.421 0.00 0.00 0.00 4.30
2504 2526 2.783288 GGAGTTACGGAGCGGAGGG 61.783 68.421 0.00 0.00 0.00 4.30
2505 2527 1.751927 GAGTTACGGAGCGGAGGGA 60.752 63.158 0.00 0.00 0.00 4.20
2506 2528 1.076192 AGTTACGGAGCGGAGGGAT 60.076 57.895 0.00 0.00 0.00 3.85
2507 2529 0.686769 AGTTACGGAGCGGAGGGATT 60.687 55.000 0.00 0.00 0.00 3.01
2508 2530 0.249363 GTTACGGAGCGGAGGGATTC 60.249 60.000 0.00 0.00 0.00 2.52
2509 2531 1.397390 TTACGGAGCGGAGGGATTCC 61.397 60.000 0.00 0.00 43.04 3.01
2516 2538 2.582436 GGAGGGATTCCGAACGCA 59.418 61.111 0.00 0.00 35.91 5.24
2517 2539 1.521681 GGAGGGATTCCGAACGCAG 60.522 63.158 0.00 0.00 35.91 5.18
2518 2540 2.125106 AGGGATTCCGAACGCAGC 60.125 61.111 0.00 0.00 38.33 5.25
2534 2556 5.080969 ACGCAGCCTAAGTAAACAGATAA 57.919 39.130 0.00 0.00 0.00 1.75
2536 2558 5.935789 ACGCAGCCTAAGTAAACAGATAAAA 59.064 36.000 0.00 0.00 0.00 1.52
2588 2610 2.821969 CCAGTACTTCTGCCTGCATTTT 59.178 45.455 0.00 0.00 42.38 1.82
2735 2757 3.739613 GGGGTTCCCCGGAGCATT 61.740 66.667 11.50 0.00 46.66 3.56
2913 2935 4.723309 GATTTCCCTGGTATGAATGAGCT 58.277 43.478 0.00 0.00 0.00 4.09
2944 2966 5.036737 CGCATCATGAAAACTGTATTTCCC 58.963 41.667 0.00 0.00 38.30 3.97
3004 3026 2.500098 AGCCTGTTTTAGCCATCGTCTA 59.500 45.455 0.00 0.00 0.00 2.59
3068 3090 5.799213 ACTGTTGTAGGAATCTCCTCTTTG 58.201 41.667 0.00 0.00 45.66 2.77
3069 3091 4.579869 TGTTGTAGGAATCTCCTCTTTGC 58.420 43.478 0.00 0.00 45.66 3.68
3070 3092 3.914426 TGTAGGAATCTCCTCTTTGCC 57.086 47.619 0.00 0.00 45.66 4.52
3071 3093 3.454858 TGTAGGAATCTCCTCTTTGCCT 58.545 45.455 0.00 0.00 45.66 4.75
3072 3094 3.846588 TGTAGGAATCTCCTCTTTGCCTT 59.153 43.478 0.00 0.00 45.66 4.35
3073 3095 3.362870 AGGAATCTCCTCTTTGCCTTG 57.637 47.619 0.00 0.00 45.66 3.61
3074 3096 2.915604 AGGAATCTCCTCTTTGCCTTGA 59.084 45.455 0.00 0.00 45.66 3.02
3075 3097 3.331889 AGGAATCTCCTCTTTGCCTTGAA 59.668 43.478 0.00 0.00 45.66 2.69
3076 3098 3.441922 GGAATCTCCTCTTTGCCTTGAAC 59.558 47.826 0.00 0.00 32.53 3.18
3077 3099 2.568623 TCTCCTCTTTGCCTTGAACC 57.431 50.000 0.00 0.00 0.00 3.62
3078 3100 1.774254 TCTCCTCTTTGCCTTGAACCA 59.226 47.619 0.00 0.00 0.00 3.67
3079 3101 2.157738 CTCCTCTTTGCCTTGAACCAG 58.842 52.381 0.00 0.00 0.00 4.00
3080 3102 1.494721 TCCTCTTTGCCTTGAACCAGT 59.505 47.619 0.00 0.00 0.00 4.00
3081 3103 2.708861 TCCTCTTTGCCTTGAACCAGTA 59.291 45.455 0.00 0.00 0.00 2.74
3082 3104 2.814336 CCTCTTTGCCTTGAACCAGTAC 59.186 50.000 0.00 0.00 0.00 2.73
3083 3105 2.814336 CTCTTTGCCTTGAACCAGTACC 59.186 50.000 0.00 0.00 0.00 3.34
3084 3106 2.173782 TCTTTGCCTTGAACCAGTACCA 59.826 45.455 0.00 0.00 0.00 3.25
3085 3107 2.270352 TTGCCTTGAACCAGTACCAG 57.730 50.000 0.00 0.00 0.00 4.00
3086 3108 1.136828 TGCCTTGAACCAGTACCAGT 58.863 50.000 0.00 0.00 0.00 4.00
3087 3109 1.493022 TGCCTTGAACCAGTACCAGTT 59.507 47.619 0.00 0.00 0.00 3.16
3088 3110 2.706723 TGCCTTGAACCAGTACCAGTTA 59.293 45.455 0.00 0.00 0.00 2.24
3089 3111 3.244422 TGCCTTGAACCAGTACCAGTTAG 60.244 47.826 0.00 0.00 0.00 2.34
3090 3112 3.868754 GCCTTGAACCAGTACCAGTTAGG 60.869 52.174 8.91 8.91 45.67 2.69
3091 3113 3.581332 CCTTGAACCAGTACCAGTTAGGA 59.419 47.826 8.00 0.00 41.22 2.94
3092 3114 4.322801 CCTTGAACCAGTACCAGTTAGGAG 60.323 50.000 8.00 3.54 41.22 3.69
3093 3115 3.853207 TGAACCAGTACCAGTTAGGAGT 58.147 45.455 0.00 0.00 41.22 3.85
3094 3116 3.830755 TGAACCAGTACCAGTTAGGAGTC 59.169 47.826 0.00 0.00 41.22 3.36
3170 3192 6.688578 TCTATGTAGCTTTCGTTCTCTGTTT 58.311 36.000 0.00 0.00 0.00 2.83
3188 3210 3.067461 TGTTTCAAACTCCGTTTCCATGG 59.933 43.478 4.97 4.97 33.10 3.66
3236 3258 7.064609 CAGCTTGAGAATTAGAACGTGGATTTA 59.935 37.037 0.00 0.00 0.00 1.40
3295 3317 7.081349 CGTTGCAAACTAATTTCAGGAATGTA 58.919 34.615 0.00 0.00 46.99 2.29
3298 3320 8.579850 TGCAAACTAATTTCAGGAATGTATCT 57.420 30.769 0.00 0.00 0.00 1.98
3321 3343 0.103208 GGAGCGTGAATCGAGATGGT 59.897 55.000 0.00 0.00 42.86 3.55
3335 3372 3.614616 CGAGATGGTTCTTACTGTTCTGC 59.385 47.826 0.00 0.00 30.30 4.26
3336 3373 4.619394 CGAGATGGTTCTTACTGTTCTGCT 60.619 45.833 0.00 0.00 30.30 4.24
3354 3391 2.618241 TGCTGCTAATAAAATGGCTCGG 59.382 45.455 0.00 0.00 0.00 4.63
3355 3392 2.605580 GCTGCTAATAAAATGGCTCGGC 60.606 50.000 0.00 0.00 0.00 5.54
3400 3437 0.464036 CTCCTACCCACGCATTAGCA 59.536 55.000 0.00 0.00 42.27 3.49
3401 3438 0.464036 TCCTACCCACGCATTAGCAG 59.536 55.000 0.00 0.00 42.27 4.24
3411 3448 1.399440 CGCATTAGCAGACACAGCAAT 59.601 47.619 0.00 0.00 42.27 3.56
3469 3508 7.230747 TGAGAAGAGAGATAATACTCCCTCTG 58.769 42.308 0.00 0.00 36.25 3.35
3470 3509 7.147213 TGAGAAGAGAGATAATACTCCCTCTGT 60.147 40.741 0.00 0.00 36.25 3.41
3471 3510 8.282801 AGAAGAGAGATAATACTCCCTCTGTA 57.717 38.462 0.00 0.00 36.25 2.74
3472 3511 8.729047 AGAAGAGAGATAATACTCCCTCTGTAA 58.271 37.037 0.00 0.00 36.25 2.41
3474 3513 8.934023 AGAGAGATAATACTCCCTCTGTAAAG 57.066 38.462 0.00 0.00 36.25 1.85
3475 3514 8.729047 AGAGAGATAATACTCCCTCTGTAAAGA 58.271 37.037 0.00 0.00 36.25 2.52
3476 3515 9.357161 GAGAGATAATACTCCCTCTGTAAAGAA 57.643 37.037 0.00 0.00 36.25 2.52
3483 3522 9.892130 AATACTCCCTCTGTAAAGAAATACAAG 57.108 33.333 0.00 0.00 35.48 3.16
3484 3523 7.554959 ACTCCCTCTGTAAAGAAATACAAGA 57.445 36.000 0.00 0.00 35.48 3.02
3485 3524 7.616313 ACTCCCTCTGTAAAGAAATACAAGAG 58.384 38.462 0.00 0.00 35.48 2.85
3486 3525 6.407202 TCCCTCTGTAAAGAAATACAAGAGC 58.593 40.000 0.00 0.00 35.48 4.09
3487 3526 5.292101 CCCTCTGTAAAGAAATACAAGAGCG 59.708 44.000 0.00 0.00 35.48 5.03
3489 3528 6.369065 CCTCTGTAAAGAAATACAAGAGCGTT 59.631 38.462 0.00 0.00 35.48 4.84
3491 3530 8.821147 TCTGTAAAGAAATACAAGAGCGTTTA 57.179 30.769 0.00 0.00 35.48 2.01
3498 3537 9.817809 AAGAAATACAAGAGCGTTTATAGATCA 57.182 29.630 0.00 0.00 0.00 2.92
3499 3538 9.250624 AGAAATACAAGAGCGTTTATAGATCAC 57.749 33.333 0.00 0.00 0.00 3.06
3500 3539 9.250624 GAAATACAAGAGCGTTTATAGATCACT 57.749 33.333 0.00 0.00 0.00 3.41
3547 3643 9.859427 TTCTTGATGGTGTTAAATGAAATCATC 57.141 29.630 0.00 0.00 35.10 2.92
3553 3649 9.754382 ATGGTGTTAAATGAAATCATCTAATGC 57.246 29.630 0.00 0.00 35.10 3.56
3635 3731 5.065731 CCATTGTGCTAAAGATGGAGAGAAC 59.934 44.000 0.00 0.00 41.20 3.01
3636 3732 4.207891 TGTGCTAAAGATGGAGAGAACC 57.792 45.455 0.00 0.00 0.00 3.62
3637 3733 3.582647 TGTGCTAAAGATGGAGAGAACCA 59.417 43.478 0.00 0.00 44.41 3.67
3638 3734 4.187694 GTGCTAAAGATGGAGAGAACCAG 58.812 47.826 0.00 0.00 43.49 4.00
3639 3735 3.840666 TGCTAAAGATGGAGAGAACCAGT 59.159 43.478 0.00 0.00 43.49 4.00
3766 3862 4.953269 TCAAATCACAGATCGTTAAACGC 58.047 39.130 0.00 0.00 42.21 4.84
3767 3863 3.634730 AATCACAGATCGTTAAACGCG 57.365 42.857 3.53 3.53 42.21 6.01
3768 3864 2.334971 TCACAGATCGTTAAACGCGA 57.665 45.000 15.93 0.00 42.21 5.87
3770 3866 3.051327 TCACAGATCGTTAAACGCGAAA 58.949 40.909 15.93 0.26 42.21 3.46
3771 3867 3.490155 TCACAGATCGTTAAACGCGAAAA 59.510 39.130 15.93 0.00 42.21 2.29
3772 3868 3.833061 CACAGATCGTTAAACGCGAAAAG 59.167 43.478 15.93 6.66 42.21 2.27
3773 3869 2.832745 CAGATCGTTAAACGCGAAAAGC 59.167 45.455 15.93 0.00 42.21 3.51
3805 3901 8.951787 TTTTGGCTTCACAACTACGTATATAT 57.048 30.769 0.00 0.00 0.00 0.86
3808 3904 9.634163 TTGGCTTCACAACTACGTATATATATG 57.366 33.333 9.95 9.95 0.00 1.78
3836 3932 2.087646 GAACTCCATTGTTCTCCCAGC 58.912 52.381 0.00 0.00 42.03 4.85
3863 3959 1.227321 GCCAAGCACAAGCAGCAAA 60.227 52.632 0.00 0.00 45.49 3.68
3864 3960 1.493134 GCCAAGCACAAGCAGCAAAC 61.493 55.000 0.00 0.00 45.49 2.93
3865 3961 0.877213 CCAAGCACAAGCAGCAAACC 60.877 55.000 0.00 0.00 45.49 3.27
3866 3962 0.877213 CAAGCACAAGCAGCAAACCC 60.877 55.000 0.00 0.00 45.49 4.11
3867 3963 2.354074 AAGCACAAGCAGCAAACCCG 62.354 55.000 0.00 0.00 45.49 5.28
3868 3964 2.844451 GCACAAGCAGCAAACCCGA 61.844 57.895 0.00 0.00 41.58 5.14
3869 3965 1.283793 CACAAGCAGCAAACCCGAG 59.716 57.895 0.00 0.00 0.00 4.63
3870 3966 2.256461 CAAGCAGCAAACCCGAGC 59.744 61.111 0.00 0.00 0.00 5.03
3871 3967 2.985847 AAGCAGCAAACCCGAGCC 60.986 61.111 0.00 0.00 0.00 4.70
3872 3968 3.790416 AAGCAGCAAACCCGAGCCA 62.790 57.895 0.00 0.00 0.00 4.75
3873 3969 4.043200 GCAGCAAACCCGAGCCAC 62.043 66.667 0.00 0.00 0.00 5.01
3874 3970 2.594303 CAGCAAACCCGAGCCACA 60.594 61.111 0.00 0.00 0.00 4.17
3875 3971 2.192861 CAGCAAACCCGAGCCACAA 61.193 57.895 0.00 0.00 0.00 3.33
3876 3972 1.454847 AGCAAACCCGAGCCACAAA 60.455 52.632 0.00 0.00 0.00 2.83
3877 3973 0.827507 AGCAAACCCGAGCCACAAAT 60.828 50.000 0.00 0.00 0.00 2.32
3878 3974 0.667184 GCAAACCCGAGCCACAAATG 60.667 55.000 0.00 0.00 0.00 2.32
3879 3975 0.958091 CAAACCCGAGCCACAAATGA 59.042 50.000 0.00 0.00 0.00 2.57
3880 3976 1.068333 CAAACCCGAGCCACAAATGAG 60.068 52.381 0.00 0.00 0.00 2.90
3881 3977 0.110486 AACCCGAGCCACAAATGAGT 59.890 50.000 0.00 0.00 0.00 3.41
3882 3978 0.606401 ACCCGAGCCACAAATGAGTG 60.606 55.000 0.00 0.00 39.21 3.51
3883 3979 0.606401 CCCGAGCCACAAATGAGTGT 60.606 55.000 0.00 0.00 37.82 3.55
3884 3980 0.518636 CCGAGCCACAAATGAGTGTG 59.481 55.000 0.00 0.00 46.98 3.82
3885 3981 0.110056 CGAGCCACAAATGAGTGTGC 60.110 55.000 0.00 0.00 46.24 4.57
3886 3982 0.953727 GAGCCACAAATGAGTGTGCA 59.046 50.000 0.00 0.00 46.24 4.57
3887 3983 1.542915 GAGCCACAAATGAGTGTGCAT 59.457 47.619 0.00 0.00 46.24 3.96
3888 3984 1.271379 AGCCACAAATGAGTGTGCATG 59.729 47.619 0.00 0.00 46.24 4.06
3889 3985 1.270274 GCCACAAATGAGTGTGCATGA 59.730 47.619 0.00 0.00 46.24 3.07
3890 3986 2.923605 GCCACAAATGAGTGTGCATGAC 60.924 50.000 0.00 0.00 46.24 3.06
3891 3987 2.352030 CCACAAATGAGTGTGCATGACC 60.352 50.000 0.00 0.00 46.24 4.02
3892 3988 2.293955 CACAAATGAGTGTGCATGACCA 59.706 45.455 0.00 0.00 42.26 4.02
3893 3989 2.294233 ACAAATGAGTGTGCATGACCAC 59.706 45.455 0.00 1.53 36.28 4.16
3894 3990 1.159285 AATGAGTGTGCATGACCACG 58.841 50.000 0.00 0.00 38.55 4.94
3895 3991 0.321346 ATGAGTGTGCATGACCACGA 59.679 50.000 0.00 0.00 38.55 4.35
3896 3992 0.319813 TGAGTGTGCATGACCACGAG 60.320 55.000 0.00 0.00 38.55 4.18
3897 3993 0.038251 GAGTGTGCATGACCACGAGA 60.038 55.000 0.00 0.00 38.55 4.04
3898 3994 0.392706 AGTGTGCATGACCACGAGAA 59.607 50.000 0.00 0.00 38.55 2.87
3899 3995 1.002430 AGTGTGCATGACCACGAGAAT 59.998 47.619 0.00 0.00 38.55 2.40
3900 3996 1.806542 GTGTGCATGACCACGAGAATT 59.193 47.619 0.00 0.00 38.55 2.17
3901 3997 2.076100 TGTGCATGACCACGAGAATTC 58.924 47.619 0.00 0.00 38.55 2.17
3902 3998 2.076100 GTGCATGACCACGAGAATTCA 58.924 47.619 8.44 0.00 0.00 2.57
3903 3999 2.094894 GTGCATGACCACGAGAATTCAG 59.905 50.000 8.44 3.81 0.00 3.02
3904 4000 2.028203 TGCATGACCACGAGAATTCAGA 60.028 45.455 8.44 0.00 0.00 3.27
3905 4001 3.002791 GCATGACCACGAGAATTCAGAA 58.997 45.455 8.44 0.00 0.00 3.02
3906 4002 3.436704 GCATGACCACGAGAATTCAGAAA 59.563 43.478 8.44 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.971922 GGAGTAGTAACACAACTTTACTCTTAA 57.028 33.333 8.75 0.00 39.82 1.85
42 43 8.579863 GGGAGTAGTAACACAACTTTACTCTTA 58.420 37.037 8.75 0.00 39.82 2.10
43 44 7.289549 AGGGAGTAGTAACACAACTTTACTCTT 59.710 37.037 8.75 0.00 39.82 2.85
55 56 2.159462 CGGACGAAGGGAGTAGTAACAC 60.159 54.545 0.00 0.00 0.00 3.32
66 67 3.332034 ACAAGTATTTTCGGACGAAGGG 58.668 45.455 7.25 0.00 35.38 3.95
70 71 4.811908 TGATGACAAGTATTTTCGGACGA 58.188 39.130 0.00 0.00 0.00 4.20
71 72 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
76 77 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
83 84 7.922278 TCTCTTTTTGTCCATTTTGATGACAAG 59.078 33.333 0.00 0.00 37.13 3.16
84 85 7.780064 TCTCTTTTTGTCCATTTTGATGACAA 58.220 30.769 0.00 0.00 34.47 3.18
120 121 9.099071 AGGAGATGCATCTAGATGTATTTTAGT 57.901 33.333 29.66 13.41 42.77 2.24
121 122 9.941325 AAGGAGATGCATCTAGATGTATTTTAG 57.059 33.333 29.66 7.72 42.77 1.85
123 124 9.638176 AAAAGGAGATGCATCTAGATGTATTTT 57.362 29.630 29.66 23.53 42.77 1.82
127 128 8.535335 GGATAAAAGGAGATGCATCTAGATGTA 58.465 37.037 28.78 26.27 40.80 2.29
128 129 7.016957 TGGATAAAAGGAGATGCATCTAGATGT 59.983 37.037 28.78 16.21 40.80 3.06
129 130 7.392418 TGGATAAAAGGAGATGCATCTAGATG 58.608 38.462 28.78 25.64 41.60 2.90
130 131 7.565190 TGGATAAAAGGAGATGCATCTAGAT 57.435 36.000 28.78 14.73 37.25 1.98
131 132 7.565190 ATGGATAAAAGGAGATGCATCTAGA 57.435 36.000 28.78 10.98 37.25 2.43
132 133 8.632906 AAATGGATAAAAGGAGATGCATCTAG 57.367 34.615 28.78 0.00 37.25 2.43
134 135 7.909485 AAAATGGATAAAAGGAGATGCATCT 57.091 32.000 29.09 29.09 40.50 2.90
136 137 9.991906 CATTAAAATGGATAAAAGGAGATGCAT 57.008 29.630 0.00 0.00 35.84 3.96
137 138 9.199645 TCATTAAAATGGATAAAAGGAGATGCA 57.800 29.630 3.00 0.00 37.03 3.96
138 139 9.468532 GTCATTAAAATGGATAAAAGGAGATGC 57.531 33.333 3.00 0.00 37.03 3.91
150 151 8.413229 CCGGAAATACTTGTCATTAAAATGGAT 58.587 33.333 0.00 0.00 37.03 3.41
151 152 7.612244 TCCGGAAATACTTGTCATTAAAATGGA 59.388 33.333 0.00 0.00 37.03 3.41
152 153 7.700656 GTCCGGAAATACTTGTCATTAAAATGG 59.299 37.037 5.23 0.00 37.03 3.16
153 154 7.428183 CGTCCGGAAATACTTGTCATTAAAATG 59.572 37.037 5.23 0.00 37.75 2.32
154 155 7.414762 CCGTCCGGAAATACTTGTCATTAAAAT 60.415 37.037 5.23 0.00 37.50 1.82
155 156 6.128227 CCGTCCGGAAATACTTGTCATTAAAA 60.128 38.462 5.23 0.00 37.50 1.52
156 157 5.352016 CCGTCCGGAAATACTTGTCATTAAA 59.648 40.000 5.23 0.00 37.50 1.52
157 158 4.871557 CCGTCCGGAAATACTTGTCATTAA 59.128 41.667 5.23 0.00 37.50 1.40
158 159 4.160065 TCCGTCCGGAAATACTTGTCATTA 59.840 41.667 5.23 0.00 42.05 1.90
159 160 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
160 161 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
161 162 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
166 167 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
167 168 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
173 174 0.110104 ATAGTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
174 175 1.978454 AATAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
230 231 0.741574 ACGAACACGTGCAGGTTGAA 60.742 50.000 17.22 0.00 38.85 2.69
240 241 3.679025 TCGCCAATAATAAACGAACACGT 59.321 39.130 0.00 0.00 42.17 4.49
260 261 0.732571 ACATAGGCGCAAATGGTTCG 59.267 50.000 20.96 1.30 0.00 3.95
283 284 0.468648 GGGACGGAGGGAGTAATTGG 59.531 60.000 0.00 0.00 0.00 3.16
311 312 7.568199 ACTACACTAGTGTCAAAAATGCTTT 57.432 32.000 31.11 5.44 43.74 3.51
344 345 5.104941 CCATCCGTCCCATAATATAAGAGCA 60.105 44.000 0.00 0.00 0.00 4.26
480 482 0.040204 AGCATGGTCTCTTTTGGGGG 59.960 55.000 0.00 0.00 0.00 5.40
584 586 8.579682 AAGCTTTTAAGTTGCAACATTCTAAG 57.420 30.769 30.11 23.27 0.00 2.18
642 644 1.404748 TGCACCAACACATCACAAGTG 59.595 47.619 0.00 0.00 42.56 3.16
664 666 7.037514 ACCAGGCCTTTTTAGTTCTTACTAGAT 60.038 37.037 0.00 0.00 38.09 1.98
687 689 5.762179 AAGATCCAATCAAGTGTAGACCA 57.238 39.130 0.00 0.00 0.00 4.02
729 731 6.018343 GTGAGTGGAGCAGAAATTATAAGAGC 60.018 42.308 0.00 0.00 0.00 4.09
753 755 0.548682 AGAGACAAGGCCCTGATGGT 60.549 55.000 8.77 0.00 36.04 3.55
923 929 9.288576 TGCCTTATTAACATGAGGATTATCAAG 57.711 33.333 0.00 0.00 38.27 3.02
966 972 3.633065 GGAGGTTGTACTAGACCTGCTAG 59.367 52.174 19.91 0.00 46.99 3.42
1017 1023 3.193263 CTCGGAACCAGAATCATCAGTG 58.807 50.000 0.00 0.00 0.00 3.66
1097 1103 7.339207 CACATTTGATTTTTGTGTAAGCTGTG 58.661 34.615 0.00 0.00 36.77 3.66
1098 1104 6.479660 CCACATTTGATTTTTGTGTAAGCTGT 59.520 34.615 0.00 0.00 39.23 4.40
1125 1131 2.803713 GCGAACGCTGCTAGAAGCC 61.804 63.158 17.52 2.16 41.51 4.35
1161 1167 0.952497 ACATGGCACTCAAGCAGACG 60.952 55.000 0.00 0.00 35.83 4.18
1219 1225 8.487313 ACAGAACATAAACTAAATGTATGCGA 57.513 30.769 0.00 0.00 36.56 5.10
1336 1342 6.201226 TGCAAAATGTGTTTAGTCAACTCA 57.799 33.333 0.00 0.00 41.83 3.41
1349 1355 2.306341 TGTGTGGGTTGCAAAATGTG 57.694 45.000 0.00 0.00 0.00 3.21
1355 1361 3.902881 AAAAGAATGTGTGGGTTGCAA 57.097 38.095 0.00 0.00 0.00 4.08
1458 1464 2.040544 CCTACAAGTTGGGCAGCGG 61.041 63.158 7.96 0.00 0.00 5.52
1464 1470 2.795329 AGTTCATGCCTACAAGTTGGG 58.205 47.619 7.96 0.57 0.00 4.12
1485 1491 4.164988 AGAGCAAGGCATCTTATGTTACCT 59.835 41.667 0.00 0.00 0.00 3.08
1614 1620 7.578189 GCGTATGGACAACTATAAGGCCTATAA 60.578 40.741 5.16 0.00 0.00 0.98
1722 1728 1.879380 CGATGGTTGAAAGTGCTTCCA 59.121 47.619 0.00 0.00 32.53 3.53
1804 1810 0.040425 GTCGACATGTTGGTGTTGGC 60.040 55.000 11.55 0.00 34.81 4.52
1805 1811 1.593196 AGTCGACATGTTGGTGTTGG 58.407 50.000 19.50 0.00 34.81 3.77
1820 1826 6.703607 AGATGCTACATGGAAATTCTTAGTCG 59.296 38.462 0.00 0.00 0.00 4.18
1848 1854 7.377766 TCTTCACAAGATGTAAAGGCAATAC 57.622 36.000 0.00 0.00 31.20 1.89
1953 1959 6.210796 GGAAGTATTGGTGTACAACAAAACC 58.789 40.000 28.89 21.14 41.89 3.27
1956 1962 5.299782 GTGGGAAGTATTGGTGTACAACAAA 59.700 40.000 28.89 15.75 41.89 2.83
1957 1963 4.822896 GTGGGAAGTATTGGTGTACAACAA 59.177 41.667 27.55 27.55 42.94 2.83
2036 2042 8.523915 AAAATGTCTCCATATGTTTCTATGCA 57.476 30.769 1.24 0.00 0.00 3.96
2158 2164 4.094739 TCCAACAAGTATGCAACATGATCG 59.905 41.667 0.00 0.00 31.22 3.69
2200 2206 2.358957 GGCATGTGCAGTGTCTTCATA 58.641 47.619 7.36 0.00 44.36 2.15
2238 2260 4.526650 AGGCAGACCGTTAAAATTGGAAAT 59.473 37.500 0.00 0.00 42.76 2.17
2331 2353 9.202273 GTAACAAAATTGGATTGCACTTCAATA 57.798 29.630 10.73 0.00 44.95 1.90
2333 2355 6.199908 CGTAACAAAATTGGATTGCACTTCAA 59.800 34.615 0.00 0.00 39.32 2.69
2334 2356 5.689514 CGTAACAAAATTGGATTGCACTTCA 59.310 36.000 0.00 0.00 0.00 3.02
2377 2399 1.398390 GATTGCCGAACACAGCCTTAG 59.602 52.381 0.00 0.00 0.00 2.18
2378 2400 1.448985 GATTGCCGAACACAGCCTTA 58.551 50.000 0.00 0.00 0.00 2.69
2379 2401 1.244019 GGATTGCCGAACACAGCCTT 61.244 55.000 0.00 0.00 0.00 4.35
2380 2402 1.675641 GGATTGCCGAACACAGCCT 60.676 57.895 0.00 0.00 0.00 4.58
2381 2403 1.648467 GAGGATTGCCGAACACAGCC 61.648 60.000 0.00 0.00 39.96 4.85
2382 2404 0.674895 AGAGGATTGCCGAACACAGC 60.675 55.000 0.00 0.00 39.96 4.40
2383 2405 1.081892 CAGAGGATTGCCGAACACAG 58.918 55.000 0.00 0.00 39.96 3.66
2384 2406 0.955428 GCAGAGGATTGCCGAACACA 60.955 55.000 0.00 0.00 38.13 3.72
2385 2407 0.674895 AGCAGAGGATTGCCGAACAC 60.675 55.000 0.00 0.00 45.18 3.32
2386 2408 0.391661 GAGCAGAGGATTGCCGAACA 60.392 55.000 0.00 0.00 45.18 3.18
2387 2409 1.092345 GGAGCAGAGGATTGCCGAAC 61.092 60.000 0.00 0.00 45.18 3.95
2388 2410 1.221840 GGAGCAGAGGATTGCCGAA 59.778 57.895 0.00 0.00 45.18 4.30
2389 2411 1.267574 AAGGAGCAGAGGATTGCCGA 61.268 55.000 0.00 0.00 45.18 5.54
2390 2412 0.813210 GAAGGAGCAGAGGATTGCCG 60.813 60.000 0.00 0.00 45.18 5.69
2391 2413 0.254178 TGAAGGAGCAGAGGATTGCC 59.746 55.000 0.00 0.00 45.18 4.52
2392 2414 1.377536 GTGAAGGAGCAGAGGATTGC 58.622 55.000 0.00 0.00 44.41 3.56
2393 2415 1.280133 TGGTGAAGGAGCAGAGGATTG 59.720 52.381 0.00 0.00 0.00 2.67
2394 2416 1.661463 TGGTGAAGGAGCAGAGGATT 58.339 50.000 0.00 0.00 0.00 3.01
2395 2417 3.406442 TGGTGAAGGAGCAGAGGAT 57.594 52.632 0.00 0.00 0.00 3.24
2396 2418 4.975490 TGGTGAAGGAGCAGAGGA 57.025 55.556 0.00 0.00 0.00 3.71
2405 2427 3.003173 TCCGCTCCCTGGTGAAGG 61.003 66.667 0.00 0.00 46.94 3.46
2406 2428 2.581354 CTCCGCTCCCTGGTGAAG 59.419 66.667 0.00 0.00 0.00 3.02
2407 2429 3.706373 GCTCCGCTCCCTGGTGAA 61.706 66.667 0.00 0.00 0.00 3.18
2426 2448 4.722700 CCAACAGGGTGCTCCGGG 62.723 72.222 0.00 0.00 41.52 5.73
2435 2457 4.785453 GAGGAGCGGCCAACAGGG 62.785 72.222 2.24 0.00 40.02 4.45
2436 2458 3.551496 TTGAGGAGCGGCCAACAGG 62.551 63.158 2.24 0.00 40.02 4.00
2437 2459 0.962356 ATTTGAGGAGCGGCCAACAG 60.962 55.000 2.24 0.00 40.02 3.16
2438 2460 0.539438 AATTTGAGGAGCGGCCAACA 60.539 50.000 2.24 0.00 40.02 3.33
2439 2461 0.603065 AAATTTGAGGAGCGGCCAAC 59.397 50.000 2.24 0.00 40.02 3.77
2440 2462 2.208132 TAAATTTGAGGAGCGGCCAA 57.792 45.000 2.24 0.00 40.02 4.52
2441 2463 2.435372 ATAAATTTGAGGAGCGGCCA 57.565 45.000 2.24 0.00 40.02 5.36
2442 2464 3.251004 CAGTATAAATTTGAGGAGCGGCC 59.749 47.826 0.00 0.00 0.00 6.13
2443 2465 3.877508 ACAGTATAAATTTGAGGAGCGGC 59.122 43.478 0.00 0.00 0.00 6.53
2444 2466 6.347725 GCATACAGTATAAATTTGAGGAGCGG 60.348 42.308 0.00 0.00 0.00 5.52
2445 2467 6.347725 GGCATACAGTATAAATTTGAGGAGCG 60.348 42.308 0.00 0.00 0.00 5.03
2446 2468 6.347725 CGGCATACAGTATAAATTTGAGGAGC 60.348 42.308 0.00 0.00 0.00 4.70
2447 2469 6.347725 GCGGCATACAGTATAAATTTGAGGAG 60.348 42.308 0.00 0.00 0.00 3.69
2448 2470 5.468746 GCGGCATACAGTATAAATTTGAGGA 59.531 40.000 0.00 0.00 0.00 3.71
2449 2471 5.470098 AGCGGCATACAGTATAAATTTGAGG 59.530 40.000 1.45 0.00 0.00 3.86
2450 2472 6.347725 GGAGCGGCATACAGTATAAATTTGAG 60.348 42.308 1.45 0.00 0.00 3.02
2451 2473 5.468746 GGAGCGGCATACAGTATAAATTTGA 59.531 40.000 1.45 0.00 0.00 2.69
2452 2474 5.614668 CGGAGCGGCATACAGTATAAATTTG 60.615 44.000 1.45 0.00 0.00 2.32
2453 2475 4.451096 CGGAGCGGCATACAGTATAAATTT 59.549 41.667 1.45 0.00 0.00 1.82
2454 2476 3.994392 CGGAGCGGCATACAGTATAAATT 59.006 43.478 1.45 0.00 0.00 1.82
2455 2477 3.585862 CGGAGCGGCATACAGTATAAAT 58.414 45.455 1.45 0.00 0.00 1.40
2456 2478 3.021269 CGGAGCGGCATACAGTATAAA 57.979 47.619 1.45 0.00 0.00 1.40
2457 2479 2.717580 CGGAGCGGCATACAGTATAA 57.282 50.000 1.45 0.00 0.00 0.98
2478 2500 3.072468 CCGTAACTCCCCTGCGGA 61.072 66.667 0.00 0.00 43.87 5.54
2479 2501 3.072468 TCCGTAACTCCCCTGCGG 61.072 66.667 0.00 0.00 42.68 5.69
2480 2502 2.494918 CTCCGTAACTCCCCTGCG 59.505 66.667 0.00 0.00 0.00 5.18
2481 2503 2.187163 GCTCCGTAACTCCCCTGC 59.813 66.667 0.00 0.00 0.00 4.85
2482 2504 2.494918 CGCTCCGTAACTCCCCTG 59.505 66.667 0.00 0.00 0.00 4.45
2483 2505 2.758737 CCGCTCCGTAACTCCCCT 60.759 66.667 0.00 0.00 0.00 4.79
2484 2506 2.757099 TCCGCTCCGTAACTCCCC 60.757 66.667 0.00 0.00 0.00 4.81
2485 2507 2.783288 CCTCCGCTCCGTAACTCCC 61.783 68.421 0.00 0.00 0.00 4.30
2486 2508 2.783288 CCCTCCGCTCCGTAACTCC 61.783 68.421 0.00 0.00 0.00 3.85
2487 2509 1.108132 ATCCCTCCGCTCCGTAACTC 61.108 60.000 0.00 0.00 0.00 3.01
2488 2510 0.686769 AATCCCTCCGCTCCGTAACT 60.687 55.000 0.00 0.00 0.00 2.24
2489 2511 0.249363 GAATCCCTCCGCTCCGTAAC 60.249 60.000 0.00 0.00 0.00 2.50
2490 2512 1.397390 GGAATCCCTCCGCTCCGTAA 61.397 60.000 0.00 0.00 33.37 3.18
2491 2513 1.831286 GGAATCCCTCCGCTCCGTA 60.831 63.158 0.00 0.00 33.37 4.02
2492 2514 3.155167 GGAATCCCTCCGCTCCGT 61.155 66.667 0.00 0.00 33.37 4.69
2499 2521 1.521681 CTGCGTTCGGAATCCCTCC 60.522 63.158 0.00 0.00 41.40 4.30
2500 2522 2.174319 GCTGCGTTCGGAATCCCTC 61.174 63.158 0.00 0.00 0.00 4.30
2501 2523 2.125106 GCTGCGTTCGGAATCCCT 60.125 61.111 0.00 0.00 0.00 4.20
2502 2524 2.306255 TAGGCTGCGTTCGGAATCCC 62.306 60.000 0.00 0.00 0.00 3.85
2503 2525 0.461339 TTAGGCTGCGTTCGGAATCC 60.461 55.000 0.00 0.00 0.00 3.01
2504 2526 0.931005 CTTAGGCTGCGTTCGGAATC 59.069 55.000 0.00 0.00 0.00 2.52
2505 2527 0.249398 ACTTAGGCTGCGTTCGGAAT 59.751 50.000 0.00 0.00 0.00 3.01
2506 2528 0.889994 TACTTAGGCTGCGTTCGGAA 59.110 50.000 0.00 0.00 0.00 4.30
2507 2529 0.889994 TTACTTAGGCTGCGTTCGGA 59.110 50.000 0.00 0.00 0.00 4.55
2508 2530 1.392510 GTTTACTTAGGCTGCGTTCGG 59.607 52.381 0.00 0.00 0.00 4.30
2509 2531 2.063266 TGTTTACTTAGGCTGCGTTCG 58.937 47.619 0.00 0.00 0.00 3.95
2510 2532 3.323243 TCTGTTTACTTAGGCTGCGTTC 58.677 45.455 0.00 0.00 0.00 3.95
2511 2533 3.396260 TCTGTTTACTTAGGCTGCGTT 57.604 42.857 0.00 0.00 0.00 4.84
2512 2534 3.611766 ATCTGTTTACTTAGGCTGCGT 57.388 42.857 0.00 0.00 0.00 5.24
2513 2535 6.417191 TTTTATCTGTTTACTTAGGCTGCG 57.583 37.500 0.00 0.00 0.00 5.18
2514 2536 9.290483 GAAATTTTATCTGTTTACTTAGGCTGC 57.710 33.333 0.00 0.00 0.00 5.25
2534 2556 6.494835 AGCTGAAAACCTACATGGAGAAATTT 59.505 34.615 6.48 4.42 39.71 1.82
2536 2558 5.416952 CAGCTGAAAACCTACATGGAGAAAT 59.583 40.000 8.42 0.00 39.71 2.17
2588 2610 0.178967 TGCCCAACTGAAATGCCTCA 60.179 50.000 0.00 0.00 0.00 3.86
2735 2757 2.752640 TTCCGATGGCCGTCTCGA 60.753 61.111 22.53 14.47 37.05 4.04
2891 2913 4.723309 AGCTCATTCATACCAGGGAAATC 58.277 43.478 0.00 0.00 0.00 2.17
2913 2935 2.416680 TTTCATGATGCGACCCATGA 57.583 45.000 0.00 9.10 45.03 3.07
2944 2966 1.094073 CGCTTCAGAATCAGCCCCTG 61.094 60.000 0.00 0.00 31.82 4.45
3004 3026 0.969149 TGAGCAGACACCAATCGAGT 59.031 50.000 0.00 0.00 0.00 4.18
3068 3090 2.271944 AACTGGTACTGGTTCAAGGC 57.728 50.000 0.00 0.00 0.00 4.35
3069 3091 3.581332 TCCTAACTGGTACTGGTTCAAGG 59.419 47.826 7.14 9.33 37.07 3.61
3070 3092 4.283722 ACTCCTAACTGGTACTGGTTCAAG 59.716 45.833 7.14 6.68 37.07 3.02
3071 3093 4.228824 ACTCCTAACTGGTACTGGTTCAA 58.771 43.478 7.14 0.00 37.07 2.69
3072 3094 3.830755 GACTCCTAACTGGTACTGGTTCA 59.169 47.826 7.14 0.00 37.07 3.18
3073 3095 3.119566 CGACTCCTAACTGGTACTGGTTC 60.120 52.174 7.14 0.00 37.07 3.62
3074 3096 2.824341 CGACTCCTAACTGGTACTGGTT 59.176 50.000 8.50 8.50 37.07 3.67
3075 3097 2.444421 CGACTCCTAACTGGTACTGGT 58.556 52.381 0.00 0.00 37.07 4.00
3076 3098 1.134560 GCGACTCCTAACTGGTACTGG 59.865 57.143 0.00 0.00 37.07 4.00
3077 3099 1.134560 GGCGACTCCTAACTGGTACTG 59.865 57.143 0.00 0.00 37.07 2.74
3078 3100 1.272313 TGGCGACTCCTAACTGGTACT 60.272 52.381 0.00 0.00 37.07 2.73
3079 3101 1.180029 TGGCGACTCCTAACTGGTAC 58.820 55.000 0.00 0.00 37.07 3.34
3080 3102 2.154567 ATGGCGACTCCTAACTGGTA 57.845 50.000 0.00 0.00 37.07 3.25
3081 3103 1.207329 GAATGGCGACTCCTAACTGGT 59.793 52.381 0.00 0.00 37.07 4.00
3082 3104 1.482593 AGAATGGCGACTCCTAACTGG 59.517 52.381 0.00 0.00 35.26 4.00
3083 3105 2.093973 ACAGAATGGCGACTCCTAACTG 60.094 50.000 0.00 0.00 43.62 3.16
3084 3106 2.180276 ACAGAATGGCGACTCCTAACT 58.820 47.619 0.00 0.00 43.62 2.24
3085 3107 2.674796 ACAGAATGGCGACTCCTAAC 57.325 50.000 0.00 0.00 43.62 2.34
3086 3108 2.100916 GCTACAGAATGGCGACTCCTAA 59.899 50.000 0.00 0.00 43.62 2.69
3087 3109 1.681793 GCTACAGAATGGCGACTCCTA 59.318 52.381 0.00 0.00 43.62 2.94
3088 3110 0.461961 GCTACAGAATGGCGACTCCT 59.538 55.000 0.00 0.00 43.62 3.69
3089 3111 0.175760 TGCTACAGAATGGCGACTCC 59.824 55.000 0.00 0.00 43.62 3.85
3090 3112 2.231215 ATGCTACAGAATGGCGACTC 57.769 50.000 0.00 0.00 43.62 3.36
3091 3113 2.036475 CCTATGCTACAGAATGGCGACT 59.964 50.000 0.00 0.00 43.62 4.18
3092 3114 2.408050 CCTATGCTACAGAATGGCGAC 58.592 52.381 0.00 0.00 43.62 5.19
3093 3115 1.344438 CCCTATGCTACAGAATGGCGA 59.656 52.381 0.00 0.00 43.62 5.54
3094 3116 1.609061 CCCCTATGCTACAGAATGGCG 60.609 57.143 0.00 0.00 43.62 5.69
3129 3151 7.386299 GCTACATAGAACCTTTACATCTCATGG 59.614 40.741 0.00 0.00 33.60 3.66
3188 3210 7.119846 AGCTGTTACACATCCTCTTAAATGAAC 59.880 37.037 0.00 0.00 0.00 3.18
3236 3258 8.664798 CAATGTTTCTTGCATTTCATCATGATT 58.335 29.630 5.16 0.00 34.68 2.57
3295 3317 2.932614 CTCGATTCACGCTCCAAAAGAT 59.067 45.455 0.00 0.00 42.26 2.40
3298 3320 2.448926 TCTCGATTCACGCTCCAAAA 57.551 45.000 0.00 0.00 42.26 2.44
3302 3324 0.103208 ACCATCTCGATTCACGCTCC 59.897 55.000 0.00 0.00 42.26 4.70
3321 3343 8.615878 TTTTATTAGCAGCAGAACAGTAAGAA 57.384 30.769 0.00 0.00 0.00 2.52
3335 3372 3.273919 GCCGAGCCATTTTATTAGCAG 57.726 47.619 0.00 0.00 0.00 4.24
3354 3391 1.474077 CATTGGTTCTGTAAGCTGGGC 59.526 52.381 0.00 0.00 34.13 5.36
3355 3392 2.795329 ACATTGGTTCTGTAAGCTGGG 58.205 47.619 0.00 0.00 34.13 4.45
3392 3429 2.163010 ACATTGCTGTGTCTGCTAATGC 59.837 45.455 15.47 0.00 34.22 3.56
3400 3437 1.181098 GCCCCAACATTGCTGTGTCT 61.181 55.000 0.00 0.00 35.22 3.41
3401 3438 1.181098 AGCCCCAACATTGCTGTGTC 61.181 55.000 0.00 0.00 35.22 3.67
3411 3448 8.753497 AAAAATAAAAATAAACAGCCCCAACA 57.247 26.923 0.00 0.00 0.00 3.33
3472 3511 9.817809 TGATCTATAAACGCTCTTGTATTTCTT 57.182 29.630 0.00 0.00 0.00 2.52
3474 3513 9.250624 AGTGATCTATAAACGCTCTTGTATTTC 57.749 33.333 0.00 0.00 0.00 2.17
3478 3517 9.117183 TCTTAGTGATCTATAAACGCTCTTGTA 57.883 33.333 0.00 0.00 0.00 2.41
3481 3520 8.851145 TCATCTTAGTGATCTATAAACGCTCTT 58.149 33.333 0.00 0.00 32.05 2.85
3482 3521 8.397575 TCATCTTAGTGATCTATAAACGCTCT 57.602 34.615 0.00 0.00 32.05 4.09
3483 3522 7.753132 CCTCATCTTAGTGATCTATAAACGCTC 59.247 40.741 0.00 0.00 32.05 5.03
3484 3523 7.309499 CCCTCATCTTAGTGATCTATAAACGCT 60.309 40.741 0.00 0.00 32.05 5.07
3485 3524 6.809196 CCCTCATCTTAGTGATCTATAAACGC 59.191 42.308 0.00 0.00 32.05 4.84
3486 3525 8.024285 GTCCCTCATCTTAGTGATCTATAAACG 58.976 40.741 0.00 0.00 32.05 3.60
3487 3526 8.024285 CGTCCCTCATCTTAGTGATCTATAAAC 58.976 40.741 0.00 0.00 32.05 2.01
3489 3528 7.175119 CACGTCCCTCATCTTAGTGATCTATAA 59.825 40.741 0.00 0.00 32.05 0.98
3491 3530 5.475220 CACGTCCCTCATCTTAGTGATCTAT 59.525 44.000 0.00 0.00 32.05 1.98
3493 3532 3.634448 CACGTCCCTCATCTTAGTGATCT 59.366 47.826 0.00 0.00 32.05 2.75
3494 3533 3.381908 ACACGTCCCTCATCTTAGTGATC 59.618 47.826 0.00 0.00 32.05 2.92
3495 3534 3.366396 ACACGTCCCTCATCTTAGTGAT 58.634 45.455 0.00 0.00 35.40 3.06
3497 3536 3.066900 CCTACACGTCCCTCATCTTAGTG 59.933 52.174 0.00 0.00 0.00 2.74
3498 3537 3.053842 TCCTACACGTCCCTCATCTTAGT 60.054 47.826 0.00 0.00 0.00 2.24
3499 3538 3.552875 TCCTACACGTCCCTCATCTTAG 58.447 50.000 0.00 0.00 0.00 2.18
3500 3539 3.657398 TCCTACACGTCCCTCATCTTA 57.343 47.619 0.00 0.00 0.00 2.10
3553 3649 7.493743 AGATAGATATGTTGCTGCTTTGAAG 57.506 36.000 0.00 0.00 0.00 3.02
3594 3690 1.178276 TGGTTGGTTTGCGTTGACTT 58.822 45.000 0.00 0.00 0.00 3.01
3636 3732 9.946165 CTTTGCATGCATATTATCCATATACTG 57.054 33.333 23.37 0.00 0.00 2.74
3637 3733 9.910267 TCTTTGCATGCATATTATCCATATACT 57.090 29.630 23.37 0.00 0.00 2.12
3661 3757 4.192317 GGGTTTCTGCTAATCATCGTTCT 58.808 43.478 0.00 0.00 0.00 3.01
3708 3804 7.817478 TGTATGTAACAAATGTACTCCAGTGAG 59.183 37.037 0.00 0.00 38.80 3.51
3746 3842 3.676172 TCGCGTTTAACGATCTGTGATTT 59.324 39.130 22.15 0.00 46.05 2.17
3779 3875 7.675962 ATATACGTAGTTGTGAAGCCAAAAA 57.324 32.000 0.08 0.00 37.78 1.94
3805 3901 3.591527 ACAATGGAGTTCTTGTCCCCATA 59.408 43.478 0.00 0.00 36.67 2.74
3806 3902 2.379907 ACAATGGAGTTCTTGTCCCCAT 59.620 45.455 0.00 0.00 39.12 4.00
3807 3903 1.780309 ACAATGGAGTTCTTGTCCCCA 59.220 47.619 0.00 0.00 29.85 4.96
3808 3904 2.586648 ACAATGGAGTTCTTGTCCCC 57.413 50.000 0.00 0.00 29.85 4.81
3836 3932 3.741476 GTGCTTGGCTTGGCGGAG 61.741 66.667 0.00 0.00 0.00 4.63
3863 3959 0.606401 CACTCATTTGTGGCTCGGGT 60.606 55.000 0.00 0.00 34.56 5.28
3864 3960 0.606401 ACACTCATTTGTGGCTCGGG 60.606 55.000 0.00 0.00 41.84 5.14
3865 3961 0.518636 CACACTCATTTGTGGCTCGG 59.481 55.000 0.00 0.00 42.79 4.63
3866 3962 0.110056 GCACACTCATTTGTGGCTCG 60.110 55.000 5.46 0.00 46.00 5.03
3867 3963 0.953727 TGCACACTCATTTGTGGCTC 59.046 50.000 5.46 0.00 46.00 4.70
3868 3964 1.271379 CATGCACACTCATTTGTGGCT 59.729 47.619 5.46 0.00 46.00 4.75
3869 3965 1.270274 TCATGCACACTCATTTGTGGC 59.730 47.619 5.46 0.00 46.00 5.01
3870 3966 2.352030 GGTCATGCACACTCATTTGTGG 60.352 50.000 5.46 0.00 46.00 4.17
3872 3968 2.294233 GTGGTCATGCACACTCATTTGT 59.706 45.455 11.03 0.00 34.84 2.83
3873 3969 2.666344 CGTGGTCATGCACACTCATTTG 60.666 50.000 14.77 0.00 35.51 2.32
3874 3970 1.536766 CGTGGTCATGCACACTCATTT 59.463 47.619 14.77 0.00 35.51 2.32
3875 3971 1.159285 CGTGGTCATGCACACTCATT 58.841 50.000 14.77 0.00 35.51 2.57
3876 3972 0.321346 TCGTGGTCATGCACACTCAT 59.679 50.000 14.77 0.00 35.51 2.90
3877 3973 0.319813 CTCGTGGTCATGCACACTCA 60.320 55.000 14.77 4.05 35.51 3.41
3878 3974 0.038251 TCTCGTGGTCATGCACACTC 60.038 55.000 14.77 0.00 35.51 3.51
3879 3975 0.392706 TTCTCGTGGTCATGCACACT 59.607 50.000 14.77 0.00 35.51 3.55
3880 3976 1.442769 ATTCTCGTGGTCATGCACAC 58.557 50.000 8.90 8.90 0.00 3.82
3881 3977 2.076100 GAATTCTCGTGGTCATGCACA 58.924 47.619 0.00 0.00 0.00 4.57
3882 3978 2.076100 TGAATTCTCGTGGTCATGCAC 58.924 47.619 7.05 0.00 0.00 4.57
3883 3979 2.028203 TCTGAATTCTCGTGGTCATGCA 60.028 45.455 7.05 0.00 0.00 3.96
3884 3980 2.621338 TCTGAATTCTCGTGGTCATGC 58.379 47.619 7.05 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.