Multiple sequence alignment - TraesCS4D01G164400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G164400 chr4D 100.000 5536 0 0 1 5536 264484962 264490497 0.000000e+00 10224.0
1 TraesCS4D01G164400 chr4D 84.253 616 81 9 2111 2719 355856349 355856955 2.220000e-163 586.0
2 TraesCS4D01G164400 chr4D 92.481 266 20 0 4922 5187 151979421 151979156 1.130000e-101 381.0
3 TraesCS4D01G164400 chr4D 75.538 372 63 24 1 364 441463735 441464086 2.060000e-34 158.0
4 TraesCS4D01G164400 chr4D 79.512 205 34 7 2941 3141 355856968 355857168 7.480000e-29 139.0
5 TraesCS4D01G164400 chr4D 96.825 63 2 0 2052 2114 355856256 355856318 7.580000e-19 106.0
6 TraesCS4D01G164400 chr4B 92.558 2822 134 34 2111 4923 272070450 272067696 0.000000e+00 3978.0
7 TraesCS4D01G164400 chr4B 96.149 883 24 5 1165 2044 272071516 272070641 0.000000e+00 1434.0
8 TraesCS4D01G164400 chr4B 96.047 430 14 2 744 1170 272071974 272071545 0.000000e+00 697.0
9 TraesCS4D01G164400 chr4B 87.939 456 49 2 267 718 272072533 272072080 2.940000e-147 532.0
10 TraesCS4D01G164400 chr4B 89.259 270 29 0 1 270 272238267 272237998 6.870000e-89 339.0
11 TraesCS4D01G164400 chr4B 84.549 233 30 5 1808 2037 250725637 250725408 5.580000e-55 226.0
12 TraesCS4D01G164400 chr4B 85.581 215 11 10 5224 5437 272067261 272067066 2.020000e-49 207.0
13 TraesCS4D01G164400 chr4B 82.222 90 13 2 5450 5536 463578796 463578707 2.140000e-09 75.0
14 TraesCS4D01G164400 chr4B 100.000 28 0 0 5199 5226 272067676 272067649 1.000000e-02 52.8
15 TraesCS4D01G164400 chr4A 95.785 1115 35 6 3678 4783 201711279 201712390 0.000000e+00 1788.0
16 TraesCS4D01G164400 chr4A 94.211 881 41 4 1165 2035 201708825 201709705 0.000000e+00 1336.0
17 TraesCS4D01G164400 chr4A 88.826 707 39 17 2984 3681 201710353 201711028 0.000000e+00 832.0
18 TraesCS4D01G164400 chr4A 95.054 465 22 1 2111 2574 201709889 201710353 0.000000e+00 730.0
19 TraesCS4D01G164400 chr4A 97.354 378 10 0 793 1170 201708419 201708796 1.300000e-180 643.0
20 TraesCS4D01G164400 chr4A 89.262 149 10 1 4776 4924 201755521 201755663 1.230000e-41 182.0
21 TraesCS4D01G164400 chr4A 91.729 133 6 2 3542 3674 201711050 201711177 4.410000e-41 180.0
22 TraesCS4D01G164400 chr4A 96.825 63 2 0 2052 2114 201709796 201709858 7.580000e-19 106.0
23 TraesCS4D01G164400 chr4A 92.958 71 4 1 5314 5383 201760168 201760238 9.810000e-18 102.0
24 TraesCS4D01G164400 chr4A 97.143 35 1 0 5197 5231 201759795 201759829 5.990000e-05 60.2
25 TraesCS4D01G164400 chr2D 82.003 739 103 22 2111 2836 55750366 55749645 7.940000e-168 601.0
26 TraesCS4D01G164400 chr2D 96.491 57 2 0 2058 2114 55750453 55750397 1.640000e-15 95.3
27 TraesCS4D01G164400 chr2D 87.013 77 6 3 5438 5514 118363459 118363531 3.550000e-12 84.2
28 TraesCS4D01G164400 chr2D 86.486 74 6 3 5441 5514 118365379 118365448 1.650000e-10 78.7
29 TraesCS4D01G164400 chr2D 97.059 34 1 0 5403 5436 600413171 600413138 2.150000e-04 58.4
30 TraesCS4D01G164400 chr2D 96.970 33 1 0 5404 5436 116839793 116839761 7.750000e-04 56.5
31 TraesCS4D01G164400 chr6D 83.923 622 84 9 2111 2722 14508270 14507655 1.030000e-161 580.0
32 TraesCS4D01G164400 chr6D 91.039 279 24 1 4916 5194 434030529 434030806 5.240000e-100 375.0
33 TraesCS4D01G164400 chr6D 89.542 153 10 6 2108 2260 17268173 17268319 7.320000e-44 189.0
34 TraesCS4D01G164400 chr6D 77.736 265 47 11 2941 3200 14507645 14507388 9.610000e-33 152.0
35 TraesCS4D01G164400 chr6D 95.238 63 3 0 2052 2114 14508363 14508301 3.530000e-17 100.0
36 TraesCS4D01G164400 chr6D 91.228 57 4 1 290 346 405088949 405088894 5.950000e-10 76.8
37 TraesCS4D01G164400 chr6D 100.000 29 0 0 2272 2300 430877612 430877584 3.000000e-03 54.7
38 TraesCS4D01G164400 chr1A 83.360 619 88 8 2111 2719 544639940 544640553 4.840000e-155 558.0
39 TraesCS4D01G164400 chr1A 81.974 233 33 7 1805 2033 340009844 340009617 7.320000e-44 189.0
40 TraesCS4D01G164400 chr1A 80.769 234 35 7 1805 2033 4852313 4852541 2.050000e-39 174.0
41 TraesCS4D01G164400 chr1A 96.825 63 2 0 2052 2114 544639847 544639909 7.580000e-19 106.0
42 TraesCS4D01G164400 chr1A 81.553 103 10 4 5436 5534 131273491 131273588 5.950000e-10 76.8
43 TraesCS4D01G164400 chr7A 80.370 703 94 22 1 667 661955141 661954447 1.390000e-135 494.0
44 TraesCS4D01G164400 chr7A 91.429 280 22 2 4916 5194 380419520 380419798 3.130000e-102 383.0
45 TraesCS4D01G164400 chr7A 91.273 275 24 0 4920 5194 423097867 423098141 5.240000e-100 375.0
46 TraesCS4D01G164400 chr6A 78.661 717 104 27 1 672 550277655 550278367 1.100000e-116 431.0
47 TraesCS4D01G164400 chr6A 92.336 274 19 2 4923 5194 105506435 105506708 6.730000e-104 388.0
48 TraesCS4D01G164400 chr7D 78.810 689 84 33 1 630 38171212 38170527 1.860000e-109 407.0
49 TraesCS4D01G164400 chr7D 93.939 264 16 0 4923 5186 415928336 415928599 3.110000e-107 399.0
50 TraesCS4D01G164400 chr7D 92.419 277 18 3 4918 5192 448243110 448243385 5.200000e-105 392.0
51 TraesCS4D01G164400 chr7D 89.041 219 19 5 1 216 572728727 572728511 3.290000e-67 267.0
52 TraesCS4D01G164400 chr7D 86.154 195 23 3 2111 2305 100660613 100660423 2.020000e-49 207.0
53 TraesCS4D01G164400 chr7D 96.825 63 2 0 2052 2114 100660706 100660644 7.580000e-19 106.0
54 TraesCS4D01G164400 chr2A 91.398 279 23 1 4915 5193 600902970 600902693 1.130000e-101 381.0
55 TraesCS4D01G164400 chr2A 91.575 273 21 2 4923 5194 437870902 437870631 5.240000e-100 375.0
56 TraesCS4D01G164400 chr2A 95.050 101 5 0 5436 5536 31382841 31382741 5.740000e-35 159.0
57 TraesCS4D01G164400 chr2A 86.885 61 8 0 2054 2114 385337646 385337586 9.950000e-08 69.4
58 TraesCS4D01G164400 chr5A 91.544 272 23 0 4923 5194 568181434 568181705 5.240000e-100 375.0
59 TraesCS4D01G164400 chr5B 77.746 692 99 32 5 662 130733497 130732827 1.880000e-99 374.0
60 TraesCS4D01G164400 chr5B 76.471 612 91 32 1 571 588388018 588388617 3.260000e-72 283.0
61 TraesCS4D01G164400 chr5B 88.710 62 7 0 2053 2114 531559224 531559163 5.950000e-10 76.8
62 TraesCS4D01G164400 chr5B 94.444 36 1 1 5401 5436 494292207 494292173 3.000000e-03 54.7
63 TraesCS4D01G164400 chr3B 90.580 276 25 1 4918 5193 700775245 700774971 1.130000e-96 364.0
64 TraesCS4D01G164400 chr3B 89.474 57 5 1 5480 5535 651429735 651429679 2.770000e-08 71.3
65 TraesCS4D01G164400 chr6B 78.835 515 65 27 194 672 605548067 605548573 1.940000e-79 307.0
66 TraesCS4D01G164400 chr6B 79.668 241 30 13 1803 2035 26636161 26636390 7.430000e-34 156.0
67 TraesCS4D01G164400 chr6B 96.970 33 1 0 5404 5436 645516774 645516742 7.750000e-04 56.5
68 TraesCS4D01G164400 chr6B 100.000 29 0 0 5408 5436 654579769 654579741 3.000000e-03 54.7
69 TraesCS4D01G164400 chr5D 88.163 245 25 4 1 242 311477480 311477237 7.020000e-74 289.0
70 TraesCS4D01G164400 chr5D 77.133 586 79 34 4 549 480342021 480342591 7.020000e-74 289.0
71 TraesCS4D01G164400 chr5D 89.583 144 11 4 2111 2254 339660655 339660516 4.410000e-41 180.0
72 TraesCS4D01G164400 chr2B 83.582 268 35 8 1 262 161991469 161991733 5.540000e-60 243.0
73 TraesCS4D01G164400 chr2B 80.085 236 34 11 1804 2033 537841903 537842131 4.440000e-36 163.0
74 TraesCS4D01G164400 chr7B 89.080 174 16 3 1832 2005 28490055 28490225 4.340000e-51 213.0
75 TraesCS4D01G164400 chr7B 79.167 192 37 1 2251 2442 7722427 7722239 4.500000e-26 130.0
76 TraesCS4D01G164400 chr3D 82.278 237 31 9 1804 2036 22385919 22385690 1.570000e-45 195.0
77 TraesCS4D01G164400 chr1B 93.333 60 4 0 2055 2114 634506407 634506466 7.640000e-14 89.8
78 TraesCS4D01G164400 chr1B 97.143 35 1 0 5402 5436 397409586 397409620 5.990000e-05 60.2
79 TraesCS4D01G164400 chr1B 100.000 29 0 0 5408 5436 305301169 305301141 3.000000e-03 54.7
80 TraesCS4D01G164400 chr1B 100.000 29 0 0 5408 5436 341934890 341934918 3.000000e-03 54.7
81 TraesCS4D01G164400 chr1D 84.058 69 10 1 296 364 312668575 312668642 1.290000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G164400 chr4D 264484962 264490497 5535 False 10224.000000 10224 100.000000 1 5536 1 chr4D.!!$F1 5535
1 TraesCS4D01G164400 chr4D 355856256 355857168 912 False 277.000000 586 86.863333 2052 3141 3 chr4D.!!$F3 1089
2 TraesCS4D01G164400 chr4B 272067066 272072533 5467 True 1150.133333 3978 93.045667 267 5437 6 chr4B.!!$R4 5170
3 TraesCS4D01G164400 chr4A 201708419 201712390 3971 False 802.142857 1788 94.254857 793 4783 7 chr4A.!!$F2 3990
4 TraesCS4D01G164400 chr2D 55749645 55750453 808 True 348.150000 601 89.247000 2058 2836 2 chr2D.!!$R3 778
5 TraesCS4D01G164400 chr6D 14507388 14508363 975 True 277.333333 580 85.632333 2052 3200 3 chr6D.!!$R3 1148
6 TraesCS4D01G164400 chr1A 544639847 544640553 706 False 332.000000 558 90.092500 2052 2719 2 chr1A.!!$F3 667
7 TraesCS4D01G164400 chr7A 661954447 661955141 694 True 494.000000 494 80.370000 1 667 1 chr7A.!!$R1 666
8 TraesCS4D01G164400 chr6A 550277655 550278367 712 False 431.000000 431 78.661000 1 672 1 chr6A.!!$F2 671
9 TraesCS4D01G164400 chr7D 38170527 38171212 685 True 407.000000 407 78.810000 1 630 1 chr7D.!!$R1 629
10 TraesCS4D01G164400 chr5B 130732827 130733497 670 True 374.000000 374 77.746000 5 662 1 chr5B.!!$R1 657
11 TraesCS4D01G164400 chr5B 588388018 588388617 599 False 283.000000 283 76.471000 1 571 1 chr5B.!!$F1 570
12 TraesCS4D01G164400 chr6B 605548067 605548573 506 False 307.000000 307 78.835000 194 672 1 chr6B.!!$F2 478
13 TraesCS4D01G164400 chr5D 480342021 480342591 570 False 289.000000 289 77.133000 4 549 1 chr5D.!!$F1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 164 0.409092 AAGGATGGAATGGGCACACA 59.591 50.000 0.0 0.00 0.00 3.72 F
1454 1714 0.800012 TGACGATGATGACGACGACA 59.200 50.000 0.0 0.88 34.70 4.35 F
2049 2325 0.246635 CAGACTGTAGAACCCCACGG 59.753 60.000 0.0 0.00 0.00 4.94 F
2265 2665 0.383949 GGCAACACACCAAACGATGT 59.616 50.000 0.0 0.00 0.00 3.06 F
2939 3356 0.545171 CCAGGAGAGTGCCATGTCAT 59.455 55.000 0.0 0.00 0.00 3.06 F
3837 4522 1.281656 CGTTTTCTTGGTGCCGACC 59.718 57.895 0.0 0.00 43.48 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 2093 0.178929 AAACTCTCTCCCCGGTGACT 60.179 55.000 0.00 0.0 0.00 3.41 R
2706 3117 0.601311 GCTGCTCTTCGTCACTGGTT 60.601 55.000 0.00 0.0 0.00 3.67 R
2952 3369 1.300931 GTGGCTCTCGTGTTGCTCA 60.301 57.895 0.00 0.0 0.00 4.26 R
3743 4427 2.168936 ACATAGTGCAATGCCCATTTGG 59.831 45.455 1.53 0.0 37.09 3.28 R
4367 5058 0.608308 CATCATGCTCCATGCCCGAT 60.608 55.000 0.44 0.0 41.18 4.18 R
5508 6596 0.036952 AGTGACCTGCGTCTTCATGG 60.037 55.000 0.00 0.0 39.94 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 79 0.612174 CGGAGGAGGAAGAGGTGACA 60.612 60.000 0.00 0.00 0.00 3.58
136 139 1.305201 TTGACAACGAAGCCTGGAAC 58.695 50.000 0.00 0.00 0.00 3.62
160 164 0.409092 AAGGATGGAATGGGCACACA 59.591 50.000 0.00 0.00 0.00 3.72
187 191 4.020218 TGTGGGAAAATAGAGGTCAGACAG 60.020 45.833 2.17 0.00 0.00 3.51
192 196 5.104318 GGAAAATAGAGGTCAGACAGGGATT 60.104 44.000 2.17 0.00 0.00 3.01
252 281 3.959535 AGAAGCAACAGAAGAGGAGAG 57.040 47.619 0.00 0.00 0.00 3.20
256 285 2.175202 GCAACAGAAGAGGAGAGGAGA 58.825 52.381 0.00 0.00 0.00 3.71
257 286 2.564947 GCAACAGAAGAGGAGAGGAGAA 59.435 50.000 0.00 0.00 0.00 2.87
258 287 3.368323 GCAACAGAAGAGGAGAGGAGAAG 60.368 52.174 0.00 0.00 0.00 2.85
351 407 2.091885 TCCCCTATTGAGCCATTTGACC 60.092 50.000 0.00 0.00 0.00 4.02
384 461 7.892778 TGTATTGCTGAACTACGATTTGTTA 57.107 32.000 0.00 0.00 0.00 2.41
420 499 6.990341 TGAAACTATGTTCAGATCATGTGG 57.010 37.500 4.44 0.00 32.56 4.17
600 704 5.130311 ACTGATTTTTGGCCTGTTTTACCTT 59.870 36.000 3.32 0.00 0.00 3.50
642 747 3.953612 ACACATGCAAAGAGTGAAAGGAA 59.046 39.130 15.76 0.00 37.05 3.36
643 748 4.202050 ACACATGCAAAGAGTGAAAGGAAC 60.202 41.667 15.76 0.00 37.05 3.62
644 749 3.953612 ACATGCAAAGAGTGAAAGGAACA 59.046 39.130 0.00 0.00 0.00 3.18
676 781 3.259123 ACCAAACATGCCCAAAGAGAATC 59.741 43.478 0.00 0.00 0.00 2.52
680 785 4.422073 ACATGCCCAAAGAGAATCGATA 57.578 40.909 0.00 0.00 42.67 2.92
682 787 4.818546 ACATGCCCAAAGAGAATCGATAAG 59.181 41.667 0.00 0.00 42.67 1.73
714 823 4.832248 ACAGATAGAAATCAAGGCGTTCA 58.168 39.130 0.00 0.00 34.28 3.18
719 870 7.601886 CAGATAGAAATCAAGGCGTTCAGATAT 59.398 37.037 0.00 0.00 34.28 1.63
728 879 5.065704 AGGCGTTCAGATATGTAGCTATG 57.934 43.478 0.00 0.00 0.00 2.23
736 887 4.020751 CAGATATGTAGCTATGTGCCCACT 60.021 45.833 0.00 0.00 44.23 4.00
737 888 5.185828 CAGATATGTAGCTATGTGCCCACTA 59.814 44.000 0.00 0.00 44.23 2.74
740 891 4.336889 TGTAGCTATGTGCCCACTATTC 57.663 45.455 0.00 0.00 44.23 1.75
751 940 4.989168 GTGCCCACTATTCGGAAGTTATAG 59.011 45.833 0.00 0.00 34.94 1.31
992 1184 1.379642 CCCCTCGACTACCACCGTAC 61.380 65.000 0.00 0.00 0.00 3.67
1014 1206 4.148825 AGGATGACGGCGCAGACC 62.149 66.667 16.26 13.29 0.00 3.85
1051 1243 1.067749 CAGATCGAGCAGGAGCAGG 59.932 63.158 2.38 0.00 45.49 4.85
1435 1695 3.267812 AGGTTGTGGTTGAGGATGATGAT 59.732 43.478 0.00 0.00 0.00 2.45
1436 1696 3.379372 GGTTGTGGTTGAGGATGATGATG 59.621 47.826 0.00 0.00 0.00 3.07
1437 1697 4.264253 GTTGTGGTTGAGGATGATGATGA 58.736 43.478 0.00 0.00 0.00 2.92
1438 1698 3.877559 TGTGGTTGAGGATGATGATGAC 58.122 45.455 0.00 0.00 0.00 3.06
1439 1699 2.868583 GTGGTTGAGGATGATGATGACG 59.131 50.000 0.00 0.00 0.00 4.35
1440 1700 2.765699 TGGTTGAGGATGATGATGACGA 59.234 45.455 0.00 0.00 0.00 4.20
1447 1707 4.818642 AGGATGATGATGACGATGATGAC 58.181 43.478 0.00 0.00 0.00 3.06
1454 1714 0.800012 TGACGATGATGACGACGACA 59.200 50.000 0.00 0.88 34.70 4.35
1669 1938 1.546029 GTCTTTGCCCTTGGATGGTTC 59.454 52.381 0.00 0.00 0.00 3.62
1707 1976 7.355017 CAACATTGGTAGCATGTGTACATATC 58.645 38.462 12.16 0.00 34.97 1.63
1828 2104 0.547075 TTTTGAACAGTCACCGGGGA 59.453 50.000 0.00 0.00 31.90 4.81
1950 2226 2.156098 GCCACGTTTATGAGGGAAACA 58.844 47.619 0.00 0.00 36.74 2.83
1951 2227 2.752903 GCCACGTTTATGAGGGAAACAT 59.247 45.455 0.00 0.00 36.74 2.71
1953 2229 3.756434 CCACGTTTATGAGGGAAACATGT 59.244 43.478 0.00 0.00 36.74 3.21
2035 2311 1.047002 CATGGCCTAGCTAGCAGACT 58.953 55.000 18.83 0.00 0.00 3.24
2040 2316 2.577700 GCCTAGCTAGCAGACTGTAGA 58.422 52.381 18.83 0.00 0.00 2.59
2044 2320 2.104170 AGCTAGCAGACTGTAGAACCC 58.896 52.381 18.83 0.00 0.00 4.11
2045 2321 1.137282 GCTAGCAGACTGTAGAACCCC 59.863 57.143 10.63 0.00 0.00 4.95
2046 2322 2.457598 CTAGCAGACTGTAGAACCCCA 58.542 52.381 3.99 0.00 0.00 4.96
2047 2323 0.977395 AGCAGACTGTAGAACCCCAC 59.023 55.000 3.99 0.00 0.00 4.61
2048 2324 0.389948 GCAGACTGTAGAACCCCACG 60.390 60.000 3.99 0.00 0.00 4.94
2049 2325 0.246635 CAGACTGTAGAACCCCACGG 59.753 60.000 0.00 0.00 0.00 4.94
2050 2326 1.079336 GACTGTAGAACCCCACGGC 60.079 63.158 0.00 0.00 0.00 5.68
2265 2665 0.383949 GGCAACACACCAAACGATGT 59.616 50.000 0.00 0.00 0.00 3.06
2361 2761 3.181493 GCGATGAGTGGAATGAAGCAAAT 60.181 43.478 0.00 0.00 0.00 2.32
2371 2771 7.282675 AGTGGAATGAAGCAAATTAGAGAGATG 59.717 37.037 0.00 0.00 0.00 2.90
2435 2836 0.809636 CAGACCGCGCCATCAACATA 60.810 55.000 0.00 0.00 0.00 2.29
2725 3136 0.601311 AACCAGTGACGAAGAGCAGC 60.601 55.000 0.00 0.00 0.00 5.25
2735 3146 1.285578 GAAGAGCAGCAGATCGGAAC 58.714 55.000 0.00 0.00 34.73 3.62
2757 3174 4.514585 GGCACACACCCACCACCA 62.515 66.667 0.00 0.00 0.00 4.17
2777 3194 2.665000 CAGCACCCGTGGATGTCT 59.335 61.111 0.00 0.00 0.00 3.41
2791 3208 1.308783 ATGTCTGAGACGCAGCGAGA 61.309 55.000 24.65 11.14 44.52 4.04
2867 3284 1.462670 CAAAGCAGAGAACTTCGAGCC 59.537 52.381 0.00 0.00 33.81 4.70
2939 3356 0.545171 CCAGGAGAGTGCCATGTCAT 59.455 55.000 0.00 0.00 0.00 3.06
2952 3369 1.348008 ATGTCATGGCGGGATCTGGT 61.348 55.000 0.00 0.00 0.00 4.00
3121 3542 3.005539 AGGGTGCGTGGAGAGCAT 61.006 61.111 0.00 0.00 46.96 3.79
3371 3796 7.308891 GCTTTTAGCTTCTTAAGGCTCTCTTTT 60.309 37.037 9.21 0.00 38.45 2.27
3516 3945 3.133003 AGTCTTTGTACTGTGCTGTGACT 59.867 43.478 10.33 10.33 0.00 3.41
3556 3985 8.988064 TTTTGTGCTGTATAAACAAAAGAACA 57.012 26.923 8.43 0.00 44.54 3.18
3621 4050 3.378112 GCTGCTTCTGGTGCATATGTTTA 59.622 43.478 4.29 0.00 39.86 2.01
3622 4051 4.037208 GCTGCTTCTGGTGCATATGTTTAT 59.963 41.667 4.29 0.00 39.86 1.40
3623 4052 5.239306 GCTGCTTCTGGTGCATATGTTTATA 59.761 40.000 4.29 0.00 39.86 0.98
3656 4085 5.091261 AGTCTGCTATTCAAACCTGTAGG 57.909 43.478 0.00 0.00 42.17 3.18
3837 4522 1.281656 CGTTTTCTTGGTGCCGACC 59.718 57.895 0.00 0.00 43.48 4.79
3876 4561 7.704899 AGGTAGTGTTAAAGAAATTGTTGTTGC 59.295 33.333 0.00 0.00 0.00 4.17
4134 4825 5.911838 GTGAAGAAAAGCAAGAATGTGAGTC 59.088 40.000 0.00 0.00 0.00 3.36
4421 5112 2.725008 GATGAGGGAGTCGAGCCG 59.275 66.667 0.00 0.00 0.00 5.52
4543 5234 4.870991 GGAGGTCACAACTTAAGAGTATGC 59.129 45.833 10.09 1.79 34.21 3.14
4584 5276 3.476552 TGAACCATTTCTCTTTGAGCGT 58.523 40.909 0.00 0.00 32.36 5.07
4588 5280 5.262588 ACCATTTCTCTTTGAGCGTTTTT 57.737 34.783 0.00 0.00 0.00 1.94
4755 5451 4.646945 TGGCATGTTTTTCACCTTTGACTA 59.353 37.500 0.00 0.00 0.00 2.59
4805 5501 4.669700 ACCCCCTTGTATTCTTTGTAACC 58.330 43.478 0.00 0.00 0.00 2.85
4824 5520 9.857957 TTGTAACCGATAAAAATAAAATGGGAC 57.142 29.630 0.00 0.00 0.00 4.46
4854 5550 5.113383 TGTGAAGCAGTAAGAAAACGAAGA 58.887 37.500 0.00 0.00 0.00 2.87
4855 5551 5.583061 TGTGAAGCAGTAAGAAAACGAAGAA 59.417 36.000 0.00 0.00 0.00 2.52
4856 5552 6.130058 GTGAAGCAGTAAGAAAACGAAGAAG 58.870 40.000 0.00 0.00 0.00 2.85
4867 5563 5.815740 AGAAAACGAAGAAGCTGAAGTAACA 59.184 36.000 0.00 0.00 0.00 2.41
4886 5582 3.003478 CGGTTTGATAGCGTCCGC 58.997 61.111 2.94 2.94 42.56 5.54
4917 5614 1.247419 TGCCGGCATCGAACCAAATT 61.247 50.000 29.03 0.00 39.00 1.82
4923 5620 4.992319 CCGGCATCGAACCAAATTATAGTA 59.008 41.667 8.42 0.00 39.00 1.82
4924 5621 5.107220 CCGGCATCGAACCAAATTATAGTAC 60.107 44.000 8.42 0.00 39.00 2.73
4926 5623 6.128902 CGGCATCGAACCAAATTATAGTACTC 60.129 42.308 0.00 0.00 39.00 2.59
4927 5624 6.147328 GGCATCGAACCAAATTATAGTACTCC 59.853 42.308 0.00 0.00 0.00 3.85
4928 5625 6.147328 GCATCGAACCAAATTATAGTACTCCC 59.853 42.308 0.00 0.00 0.00 4.30
4930 5627 7.047460 TCGAACCAAATTATAGTACTCCCTC 57.953 40.000 0.00 0.00 0.00 4.30
4931 5628 6.041296 TCGAACCAAATTATAGTACTCCCTCC 59.959 42.308 0.00 0.00 0.00 4.30
4932 5629 5.803237 ACCAAATTATAGTACTCCCTCCG 57.197 43.478 0.00 0.00 0.00 4.63
4933 5630 5.214293 ACCAAATTATAGTACTCCCTCCGT 58.786 41.667 0.00 0.00 0.00 4.69
4934 5631 5.664457 ACCAAATTATAGTACTCCCTCCGTT 59.336 40.000 0.00 0.00 0.00 4.44
4935 5632 6.183360 ACCAAATTATAGTACTCCCTCCGTTC 60.183 42.308 0.00 0.00 0.00 3.95
4936 5633 6.221659 CAAATTATAGTACTCCCTCCGTTCC 58.778 44.000 0.00 0.00 0.00 3.62
4937 5634 4.803329 TTATAGTACTCCCTCCGTTCCT 57.197 45.455 0.00 0.00 0.00 3.36
4938 5635 5.912149 TTATAGTACTCCCTCCGTTCCTA 57.088 43.478 0.00 0.00 0.00 2.94
4939 5636 4.803329 ATAGTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
4940 5637 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4941 5638 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4942 5639 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4943 5640 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4944 5641 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
4945 5642 7.477008 AGTACTCCCTCCGTTCCTAAATATAT 58.523 38.462 0.00 0.00 0.00 0.86
4946 5643 6.607004 ACTCCCTCCGTTCCTAAATATATG 57.393 41.667 0.00 0.00 0.00 1.78
4947 5644 5.484290 ACTCCCTCCGTTCCTAAATATATGG 59.516 44.000 0.00 0.00 0.00 2.74
4948 5645 5.408824 TCCCTCCGTTCCTAAATATATGGT 58.591 41.667 0.00 0.00 0.00 3.55
4949 5646 5.247564 TCCCTCCGTTCCTAAATATATGGTG 59.752 44.000 0.00 0.00 0.00 4.17
4950 5647 5.012768 CCCTCCGTTCCTAAATATATGGTGT 59.987 44.000 0.00 0.00 0.00 4.16
4951 5648 6.211986 CCCTCCGTTCCTAAATATATGGTGTA 59.788 42.308 0.00 0.00 0.00 2.90
4952 5649 7.093024 CCCTCCGTTCCTAAATATATGGTGTAT 60.093 40.741 0.00 0.00 0.00 2.29
4953 5650 8.319146 CCTCCGTTCCTAAATATATGGTGTATT 58.681 37.037 0.00 0.00 0.00 1.89
4954 5651 9.151471 CTCCGTTCCTAAATATATGGTGTATTG 57.849 37.037 0.00 0.00 0.00 1.90
4955 5652 8.653191 TCCGTTCCTAAATATATGGTGTATTGT 58.347 33.333 0.00 0.00 0.00 2.71
4956 5653 9.280174 CCGTTCCTAAATATATGGTGTATTGTT 57.720 33.333 0.00 0.00 0.00 2.83
4964 5661 8.940768 AATATATGGTGTATTGTTTTTGGCAC 57.059 30.769 0.00 0.00 0.00 5.01
4965 5662 3.085443 TGGTGTATTGTTTTTGGCACG 57.915 42.857 0.00 0.00 0.00 5.34
4966 5663 2.223829 TGGTGTATTGTTTTTGGCACGG 60.224 45.455 0.00 0.00 0.00 4.94
4967 5664 2.034812 GGTGTATTGTTTTTGGCACGGA 59.965 45.455 0.00 0.00 0.00 4.69
4968 5665 3.491104 GGTGTATTGTTTTTGGCACGGAA 60.491 43.478 0.00 0.00 0.00 4.30
4969 5666 4.113354 GTGTATTGTTTTTGGCACGGAAA 58.887 39.130 0.00 0.00 0.00 3.13
4970 5667 4.747605 GTGTATTGTTTTTGGCACGGAAAT 59.252 37.500 0.00 0.00 0.00 2.17
4971 5668 5.235401 GTGTATTGTTTTTGGCACGGAAATT 59.765 36.000 0.00 0.00 0.00 1.82
4972 5669 6.421202 GTGTATTGTTTTTGGCACGGAAATTA 59.579 34.615 0.00 0.00 0.00 1.40
4973 5670 6.984474 TGTATTGTTTTTGGCACGGAAATTAA 59.016 30.769 0.00 0.00 0.00 1.40
4974 5671 6.927294 ATTGTTTTTGGCACGGAAATTAAA 57.073 29.167 0.00 0.00 0.00 1.52
4975 5672 5.975410 TGTTTTTGGCACGGAAATTAAAG 57.025 34.783 0.00 0.00 0.00 1.85
4976 5673 5.661458 TGTTTTTGGCACGGAAATTAAAGA 58.339 33.333 0.00 0.00 0.00 2.52
4977 5674 6.106673 TGTTTTTGGCACGGAAATTAAAGAA 58.893 32.000 0.00 0.00 0.00 2.52
4978 5675 6.036191 TGTTTTTGGCACGGAAATTAAAGAAC 59.964 34.615 0.00 0.00 0.00 3.01
4979 5676 3.546002 TGGCACGGAAATTAAAGAACG 57.454 42.857 0.00 0.00 0.00 3.95
4980 5677 2.247637 GGCACGGAAATTAAAGAACGC 58.752 47.619 0.00 0.00 0.00 4.84
4981 5678 2.350964 GGCACGGAAATTAAAGAACGCA 60.351 45.455 0.00 0.00 0.00 5.24
4982 5679 2.655001 GCACGGAAATTAAAGAACGCAC 59.345 45.455 0.00 0.00 0.00 5.34
4983 5680 2.900046 CACGGAAATTAAAGAACGCACG 59.100 45.455 0.00 0.00 0.00 5.34
4984 5681 2.545106 ACGGAAATTAAAGAACGCACGT 59.455 40.909 0.00 0.00 0.00 4.49
4985 5682 2.900046 CGGAAATTAAAGAACGCACGTG 59.100 45.455 12.28 12.28 0.00 4.49
4986 5683 3.231160 GGAAATTAAAGAACGCACGTGG 58.769 45.455 18.88 10.05 0.00 4.94
4987 5684 3.058777 GGAAATTAAAGAACGCACGTGGA 60.059 43.478 18.88 0.00 0.00 4.02
4988 5685 3.806316 AATTAAAGAACGCACGTGGAG 57.194 42.857 18.88 2.38 0.00 3.86
4989 5686 1.504359 TTAAAGAACGCACGTGGAGG 58.496 50.000 18.88 0.00 0.00 4.30
4990 5687 0.320073 TAAAGAACGCACGTGGAGGG 60.320 55.000 18.88 1.91 0.00 4.30
4991 5688 2.035237 AAAGAACGCACGTGGAGGGA 62.035 55.000 18.88 0.00 0.00 4.20
4992 5689 2.029964 GAACGCACGTGGAGGGAA 59.970 61.111 18.88 0.00 0.00 3.97
4993 5690 1.595929 GAACGCACGTGGAGGGAAA 60.596 57.895 18.88 0.00 0.00 3.13
4994 5691 1.153127 AACGCACGTGGAGGGAAAA 60.153 52.632 18.88 0.00 0.00 2.29
4995 5692 0.536460 AACGCACGTGGAGGGAAAAT 60.536 50.000 18.88 0.00 0.00 1.82
4996 5693 0.536460 ACGCACGTGGAGGGAAAATT 60.536 50.000 18.88 0.00 0.00 1.82
4997 5694 0.596082 CGCACGTGGAGGGAAAATTT 59.404 50.000 18.88 0.00 0.00 1.82
4998 5695 1.401018 CGCACGTGGAGGGAAAATTTC 60.401 52.381 18.88 0.00 0.00 2.17
4999 5696 1.611491 GCACGTGGAGGGAAAATTTCA 59.389 47.619 18.88 0.00 0.00 2.69
5000 5697 2.231235 GCACGTGGAGGGAAAATTTCAT 59.769 45.455 18.88 0.00 0.00 2.57
5001 5698 3.442273 GCACGTGGAGGGAAAATTTCATA 59.558 43.478 18.88 0.00 0.00 2.15
5002 5699 4.082463 GCACGTGGAGGGAAAATTTCATAA 60.082 41.667 18.88 0.00 0.00 1.90
5003 5700 5.640732 CACGTGGAGGGAAAATTTCATAAG 58.359 41.667 7.95 0.00 0.00 1.73
5004 5701 5.183140 CACGTGGAGGGAAAATTTCATAAGT 59.817 40.000 7.95 0.00 0.00 2.24
5005 5702 5.773176 ACGTGGAGGGAAAATTTCATAAGTT 59.227 36.000 8.09 0.00 0.00 2.66
5006 5703 6.266786 ACGTGGAGGGAAAATTTCATAAGTTT 59.733 34.615 8.09 0.00 34.54 2.66
5007 5704 7.151976 CGTGGAGGGAAAATTTCATAAGTTTT 58.848 34.615 8.09 0.00 32.23 2.43
5008 5705 7.116233 CGTGGAGGGAAAATTTCATAAGTTTTG 59.884 37.037 8.09 0.00 32.23 2.44
5009 5706 7.387673 GTGGAGGGAAAATTTCATAAGTTTTGG 59.612 37.037 8.09 0.00 32.23 3.28
5010 5707 6.878923 GGAGGGAAAATTTCATAAGTTTTGGG 59.121 38.462 8.09 0.00 32.23 4.12
5011 5708 7.387265 AGGGAAAATTTCATAAGTTTTGGGT 57.613 32.000 8.09 0.00 32.23 4.51
5012 5709 7.450074 AGGGAAAATTTCATAAGTTTTGGGTC 58.550 34.615 8.09 0.00 32.23 4.46
5013 5710 7.071824 AGGGAAAATTTCATAAGTTTTGGGTCA 59.928 33.333 8.09 0.00 32.23 4.02
5014 5711 7.387673 GGGAAAATTTCATAAGTTTTGGGTCAG 59.612 37.037 8.09 0.00 32.23 3.51
5015 5712 8.147704 GGAAAATTTCATAAGTTTTGGGTCAGA 58.852 33.333 8.09 0.00 32.23 3.27
5016 5713 9.710900 GAAAATTTCATAAGTTTTGGGTCAGAT 57.289 29.630 0.11 0.00 32.23 2.90
5020 5717 8.698973 TTTCATAAGTTTTGGGTCAGATTACA 57.301 30.769 0.00 0.00 0.00 2.41
5021 5718 7.681939 TCATAAGTTTTGGGTCAGATTACAC 57.318 36.000 0.00 0.00 0.00 2.90
5022 5719 6.657541 TCATAAGTTTTGGGTCAGATTACACC 59.342 38.462 0.00 0.00 0.00 4.16
5023 5720 4.724279 AGTTTTGGGTCAGATTACACCT 57.276 40.909 0.00 0.00 32.69 4.00
5024 5721 4.398319 AGTTTTGGGTCAGATTACACCTG 58.602 43.478 0.00 0.00 32.69 4.00
5025 5722 4.104102 AGTTTTGGGTCAGATTACACCTGA 59.896 41.667 0.00 0.00 38.24 3.86
5035 5732 7.239763 TCAGATTACACCTGACTAATTGACA 57.760 36.000 0.00 0.00 35.89 3.58
5036 5733 7.097192 TCAGATTACACCTGACTAATTGACAC 58.903 38.462 0.00 0.00 35.89 3.67
5037 5734 6.035005 CAGATTACACCTGACTAATTGACACG 59.965 42.308 0.00 0.00 33.65 4.49
5038 5735 5.456548 TTACACCTGACTAATTGACACGA 57.543 39.130 0.00 0.00 0.00 4.35
5039 5736 4.330944 ACACCTGACTAATTGACACGAA 57.669 40.909 0.00 0.00 0.00 3.85
5040 5737 4.699637 ACACCTGACTAATTGACACGAAA 58.300 39.130 0.00 0.00 0.00 3.46
5041 5738 5.120399 ACACCTGACTAATTGACACGAAAA 58.880 37.500 0.00 0.00 0.00 2.29
5042 5739 5.587043 ACACCTGACTAATTGACACGAAAAA 59.413 36.000 0.00 0.00 0.00 1.94
5067 5764 9.678260 AAATAGAGGAGCTTGCATAATATAAGG 57.322 33.333 0.00 0.00 0.00 2.69
5068 5765 6.942163 AGAGGAGCTTGCATAATATAAGGA 57.058 37.500 0.00 0.00 0.00 3.36
5069 5766 7.321717 AGAGGAGCTTGCATAATATAAGGAA 57.678 36.000 0.00 0.00 0.00 3.36
5070 5767 7.749666 AGAGGAGCTTGCATAATATAAGGAAA 58.250 34.615 0.00 0.00 0.00 3.13
5071 5768 7.882271 AGAGGAGCTTGCATAATATAAGGAAAG 59.118 37.037 0.00 0.00 0.00 2.62
5072 5769 6.944862 AGGAGCTTGCATAATATAAGGAAAGG 59.055 38.462 0.00 0.00 0.00 3.11
5073 5770 6.717084 GGAGCTTGCATAATATAAGGAAAGGT 59.283 38.462 0.00 0.00 0.00 3.50
5074 5771 7.883311 GGAGCTTGCATAATATAAGGAAAGGTA 59.117 37.037 0.00 0.00 0.00 3.08
5075 5772 9.284968 GAGCTTGCATAATATAAGGAAAGGTAA 57.715 33.333 0.00 0.00 0.00 2.85
5076 5773 9.813826 AGCTTGCATAATATAAGGAAAGGTAAT 57.186 29.630 0.00 0.00 0.00 1.89
5089 5786 8.966155 AAGGAAAGGTAATCAAATCCCTAAAA 57.034 30.769 0.00 0.00 0.00 1.52
5090 5787 8.966155 AGGAAAGGTAATCAAATCCCTAAAAA 57.034 30.769 0.00 0.00 0.00 1.94
5116 5813 8.905103 AATTATTCAAACAAGTGGTATAACGC 57.095 30.769 0.00 0.00 0.00 4.84
5117 5814 5.950758 ATTCAAACAAGTGGTATAACGCA 57.049 34.783 3.77 0.00 0.00 5.24
5118 5815 5.752892 TTCAAACAAGTGGTATAACGCAA 57.247 34.783 3.77 0.00 0.00 4.85
5119 5816 5.950758 TCAAACAAGTGGTATAACGCAAT 57.049 34.783 3.77 0.00 0.00 3.56
5120 5817 7.436430 TTCAAACAAGTGGTATAACGCAATA 57.564 32.000 3.77 0.00 0.00 1.90
5121 5818 6.833839 TCAAACAAGTGGTATAACGCAATAC 58.166 36.000 3.77 0.25 0.00 1.89
5122 5819 6.427242 TCAAACAAGTGGTATAACGCAATACA 59.573 34.615 3.77 0.00 34.58 2.29
5123 5820 5.789710 ACAAGTGGTATAACGCAATACAC 57.210 39.130 3.77 0.00 34.58 2.90
5124 5821 4.632688 ACAAGTGGTATAACGCAATACACC 59.367 41.667 3.77 0.00 34.58 4.16
5125 5822 4.748277 AGTGGTATAACGCAATACACCT 57.252 40.909 3.77 2.78 34.58 4.00
5126 5823 5.093849 AGTGGTATAACGCAATACACCTT 57.906 39.130 3.77 0.00 34.58 3.50
5127 5824 6.224665 AGTGGTATAACGCAATACACCTTA 57.775 37.500 3.77 0.00 34.58 2.69
5128 5825 6.823497 AGTGGTATAACGCAATACACCTTAT 58.177 36.000 3.77 0.00 34.58 1.73
5129 5826 7.954835 AGTGGTATAACGCAATACACCTTATA 58.045 34.615 3.77 0.00 34.58 0.98
5130 5827 8.591072 AGTGGTATAACGCAATACACCTTATAT 58.409 33.333 3.77 0.00 34.58 0.86
5131 5828 9.211485 GTGGTATAACGCAATACACCTTATATT 57.789 33.333 9.27 0.00 34.58 1.28
5132 5829 9.781633 TGGTATAACGCAATACACCTTATATTT 57.218 29.630 9.27 0.00 34.58 1.40
5136 5833 9.772973 ATAACGCAATACACCTTATATTTCAGA 57.227 29.630 0.00 0.00 0.00 3.27
5137 5834 8.677148 AACGCAATACACCTTATATTTCAGAT 57.323 30.769 0.00 0.00 0.00 2.90
5138 5835 8.677148 ACGCAATACACCTTATATTTCAGATT 57.323 30.769 0.00 0.00 0.00 2.40
5139 5836 9.120538 ACGCAATACACCTTATATTTCAGATTT 57.879 29.630 0.00 0.00 0.00 2.17
5140 5837 9.950680 CGCAATACACCTTATATTTCAGATTTT 57.049 29.630 0.00 0.00 0.00 1.82
5176 5873 8.118976 TCTATACACCTTATATCAAGGAACGG 57.881 38.462 9.96 0.05 39.81 4.44
5177 5874 6.989155 ATACACCTTATATCAAGGAACGGA 57.011 37.500 9.96 0.00 39.81 4.69
5178 5875 5.277857 ACACCTTATATCAAGGAACGGAG 57.722 43.478 9.96 0.00 39.81 4.63
5179 5876 4.101119 ACACCTTATATCAAGGAACGGAGG 59.899 45.833 9.96 0.00 39.81 4.30
5180 5877 4.344102 CACCTTATATCAAGGAACGGAGGA 59.656 45.833 9.96 0.00 39.81 3.71
5181 5878 4.966805 ACCTTATATCAAGGAACGGAGGAA 59.033 41.667 9.96 0.00 39.81 3.36
5182 5879 5.070580 ACCTTATATCAAGGAACGGAGGAAG 59.929 44.000 9.96 0.00 39.81 3.46
5183 5880 5.070580 CCTTATATCAAGGAACGGAGGAAGT 59.929 44.000 0.00 0.00 39.81 3.01
5184 5881 6.267014 CCTTATATCAAGGAACGGAGGAAGTA 59.733 42.308 0.00 0.00 39.81 2.24
5185 5882 7.038941 CCTTATATCAAGGAACGGAGGAAGTAT 60.039 40.741 0.00 0.00 39.81 2.12
5186 5883 6.749036 ATATCAAGGAACGGAGGAAGTATT 57.251 37.500 0.00 0.00 0.00 1.89
5187 5884 7.850935 ATATCAAGGAACGGAGGAAGTATTA 57.149 36.000 0.00 0.00 0.00 0.98
5188 5885 6.749036 ATCAAGGAACGGAGGAAGTATTAT 57.251 37.500 0.00 0.00 0.00 1.28
5189 5886 6.555463 TCAAGGAACGGAGGAAGTATTATT 57.445 37.500 0.00 0.00 0.00 1.40
5190 5887 6.954232 TCAAGGAACGGAGGAAGTATTATTT 58.046 36.000 0.00 0.00 0.00 1.40
5191 5888 7.399634 TCAAGGAACGGAGGAAGTATTATTTT 58.600 34.615 0.00 0.00 0.00 1.82
5192 5889 7.886446 TCAAGGAACGGAGGAAGTATTATTTTT 59.114 33.333 0.00 0.00 0.00 1.94
5193 5890 7.625828 AGGAACGGAGGAAGTATTATTTTTG 57.374 36.000 0.00 0.00 0.00 2.44
5194 5891 6.095021 AGGAACGGAGGAAGTATTATTTTTGC 59.905 38.462 0.00 0.00 0.00 3.68
5195 5892 6.095021 GGAACGGAGGAAGTATTATTTTTGCT 59.905 38.462 0.00 0.00 0.00 3.91
5196 5893 6.436843 ACGGAGGAAGTATTATTTTTGCTG 57.563 37.500 0.00 0.00 0.00 4.41
5197 5894 6.177610 ACGGAGGAAGTATTATTTTTGCTGA 58.822 36.000 0.00 0.00 0.00 4.26
5229 6316 4.270008 TCATTTCTCGGGGAAAGAAATCC 58.730 43.478 9.21 0.00 45.74 3.01
5248 6335 4.379339 TCCCTTACAAAGCAAACAACAC 57.621 40.909 0.00 0.00 0.00 3.32
5255 6342 4.241681 ACAAAGCAAACAACACAAATCGT 58.758 34.783 0.00 0.00 0.00 3.73
5270 6357 7.370383 ACACAAATCGTCAATAGCAAGAAATT 58.630 30.769 0.00 0.00 0.00 1.82
5319 6407 6.582437 TCATGTAGTTATACGTGCACAATG 57.418 37.500 18.64 2.84 45.03 2.82
5336 6424 7.490079 GTGCACAATGTCAATCACATCATATTT 59.510 33.333 13.17 0.00 45.77 1.40
5337 6425 8.035984 TGCACAATGTCAATCACATCATATTTT 58.964 29.630 0.00 0.00 45.77 1.82
5338 6426 8.875803 GCACAATGTCAATCACATCATATTTTT 58.124 29.630 0.00 0.00 45.77 1.94
5399 6487 7.984050 GGATTCTCTTCTCACAACATATCTCAA 59.016 37.037 0.00 0.00 0.00 3.02
5406 6494 9.775854 CTTCTCACAACATATCTCAATCCTAAT 57.224 33.333 0.00 0.00 0.00 1.73
5431 6519 4.035091 GCATCTACAACCGCATATGACAAA 59.965 41.667 6.97 0.00 0.00 2.83
5437 6525 4.278170 ACAACCGCATATGACAAATATGGG 59.722 41.667 6.97 12.84 41.63 4.00
5438 6526 4.365514 ACCGCATATGACAAATATGGGA 57.634 40.909 18.61 0.00 43.41 4.37
5439 6527 4.326826 ACCGCATATGACAAATATGGGAG 58.673 43.478 18.61 12.92 43.41 4.30
5440 6528 3.127548 CCGCATATGACAAATATGGGAGC 59.872 47.826 18.61 1.32 43.41 4.70
5441 6529 4.005650 CGCATATGACAAATATGGGAGCT 58.994 43.478 6.97 0.00 43.41 4.09
5442 6530 4.093998 CGCATATGACAAATATGGGAGCTC 59.906 45.833 6.97 4.71 43.41 4.09
5443 6531 4.397417 GCATATGACAAATATGGGAGCTCC 59.603 45.833 25.59 25.59 33.72 4.70
5444 6532 5.805751 GCATATGACAAATATGGGAGCTCCT 60.806 44.000 31.36 16.10 33.72 3.69
5445 6533 3.565764 TGACAAATATGGGAGCTCCTG 57.434 47.619 31.36 22.16 36.20 3.86
5446 6534 2.846206 TGACAAATATGGGAGCTCCTGT 59.154 45.455 31.36 25.14 36.20 4.00
5447 6535 4.037222 TGACAAATATGGGAGCTCCTGTA 58.963 43.478 31.36 22.95 36.20 2.74
5448 6536 4.101585 TGACAAATATGGGAGCTCCTGTAG 59.898 45.833 31.36 16.81 36.20 2.74
5449 6537 3.392616 ACAAATATGGGAGCTCCTGTAGG 59.607 47.826 31.36 17.00 36.20 3.18
5450 6538 2.334006 ATATGGGAGCTCCTGTAGGG 57.666 55.000 31.36 0.00 36.20 3.53
5451 6539 0.471971 TATGGGAGCTCCTGTAGGGC 60.472 60.000 31.36 13.93 36.20 5.19
5452 6540 3.541713 GGGAGCTCCTGTAGGGCG 61.542 72.222 31.36 0.00 36.77 6.13
5453 6541 4.228567 GGAGCTCCTGTAGGGCGC 62.229 72.222 26.25 0.00 36.77 6.53
5454 6542 4.228567 GAGCTCCTGTAGGGCGCC 62.229 72.222 21.18 21.18 36.77 6.53
5455 6543 4.787280 AGCTCCTGTAGGGCGCCT 62.787 66.667 28.56 15.07 36.77 5.52
5456 6544 3.787001 GCTCCTGTAGGGCGCCTT 61.787 66.667 28.56 23.35 34.61 4.35
5457 6545 2.432300 GCTCCTGTAGGGCGCCTTA 61.432 63.158 28.56 22.00 34.61 2.69
5458 6546 1.442148 CTCCTGTAGGGCGCCTTAC 59.558 63.158 34.82 34.82 34.61 2.34
5469 6557 2.822255 GCCTTACGCGCCCATTGA 60.822 61.111 5.73 0.00 0.00 2.57
5470 6558 3.098555 CCTTACGCGCCCATTGAC 58.901 61.111 5.73 0.00 0.00 3.18
5471 6559 2.701006 CTTACGCGCCCATTGACG 59.299 61.111 5.73 0.00 0.00 4.35
5472 6560 1.807981 CTTACGCGCCCATTGACGA 60.808 57.895 5.73 0.00 0.00 4.20
5473 6561 1.151777 CTTACGCGCCCATTGACGAT 61.152 55.000 5.73 0.00 0.00 3.73
5474 6562 0.741574 TTACGCGCCCATTGACGATT 60.742 50.000 5.73 0.00 0.00 3.34
5475 6563 1.149361 TACGCGCCCATTGACGATTC 61.149 55.000 5.73 0.00 0.00 2.52
5476 6564 2.324477 GCGCCCATTGACGATTCG 59.676 61.111 4.14 4.14 0.00 3.34
5477 6565 3.014036 CGCCCATTGACGATTCGG 58.986 61.111 11.29 0.00 0.00 4.30
5478 6566 2.534019 CGCCCATTGACGATTCGGG 61.534 63.158 11.29 1.81 40.11 5.14
5479 6567 3.420943 CCCATTGACGATTCGGGC 58.579 61.111 11.29 2.73 0.00 6.13
5480 6568 2.534019 CCCATTGACGATTCGGGCG 61.534 63.158 11.29 0.00 0.00 6.13
5481 6569 2.324477 CATTGACGATTCGGGCGC 59.676 61.111 11.29 0.00 0.00 6.53
5482 6570 2.895372 ATTGACGATTCGGGCGCC 60.895 61.111 21.18 21.18 0.00 6.53
5498 6586 2.816958 CCCACTGCAGCACGCTAG 60.817 66.667 15.27 0.00 43.06 3.42
5499 6587 2.047844 CCACTGCAGCACGCTAGT 60.048 61.111 15.27 0.00 43.06 2.57
5520 6608 4.776322 CCGGCCCATGAAGACGCA 62.776 66.667 5.50 0.00 0.00 5.24
5521 6609 3.197790 CGGCCCATGAAGACGCAG 61.198 66.667 0.00 0.00 0.00 5.18
5522 6610 2.825836 GGCCCATGAAGACGCAGG 60.826 66.667 0.00 0.00 0.00 4.85
5523 6611 2.045926 GCCCATGAAGACGCAGGT 60.046 61.111 0.00 0.00 0.00 4.00
5524 6612 2.109126 GCCCATGAAGACGCAGGTC 61.109 63.158 0.00 0.00 43.76 3.85
5525 6613 1.296392 CCCATGAAGACGCAGGTCA 59.704 57.895 0.00 0.00 45.92 4.02
5526 6614 1.021390 CCCATGAAGACGCAGGTCAC 61.021 60.000 0.00 0.00 45.92 3.67
5527 6615 0.036952 CCATGAAGACGCAGGTCACT 60.037 55.000 0.00 0.00 45.92 3.41
5528 6616 1.073964 CATGAAGACGCAGGTCACTG 58.926 55.000 0.00 0.00 45.92 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 139 1.901159 TGCCCATTCCATCCTTTTGTG 59.099 47.619 0.00 0.00 0.00 3.33
160 164 5.488919 TCTGACCTCTATTTTCCCACATTCT 59.511 40.000 0.00 0.00 0.00 2.40
187 191 5.353956 GCTCTTCTTCTTCTTCTTCAATCCC 59.646 44.000 0.00 0.00 0.00 3.85
192 196 6.166984 TCTTGCTCTTCTTCTTCTTCTTCA 57.833 37.500 0.00 0.00 0.00 3.02
224 253 5.282055 TCTTCTGTTGCTTCTTCTCTTCA 57.718 39.130 0.00 0.00 0.00 3.02
252 281 6.394809 TGTTGTTGTTTCTTTTTCCTTCTCC 58.605 36.000 0.00 0.00 0.00 3.71
351 407 6.676995 CGTAGTTCAGCAATACAAATGTAACG 59.323 38.462 0.00 0.00 33.76 3.18
384 461 8.822805 TGAACATAGTTTCAGTCCTAATTAGGT 58.177 33.333 27.14 9.82 36.66 3.08
571 675 2.423538 ACAGGCCAAAAATCAGTATCGC 59.576 45.455 5.01 0.00 0.00 4.58
572 676 4.701956 AACAGGCCAAAAATCAGTATCG 57.298 40.909 5.01 0.00 0.00 2.92
600 704 1.307778 TCTTAGATGGGGCTGGCCA 60.308 57.895 22.68 4.71 37.98 5.36
642 747 4.241590 CATGTTTGGTTACATGCACTGT 57.758 40.909 4.06 0.00 46.13 3.55
676 781 7.767745 TCTATCTGTATACGTAGCCTTATCG 57.232 40.000 0.08 0.00 0.00 2.92
680 785 8.405418 TGATTTCTATCTGTATACGTAGCCTT 57.595 34.615 0.08 0.00 0.00 4.35
682 787 7.755822 CCTTGATTTCTATCTGTATACGTAGCC 59.244 40.741 0.08 0.00 0.00 3.93
714 823 4.163427 AGTGGGCACATAGCTACATATCT 58.837 43.478 0.00 0.00 44.79 1.98
719 870 3.243737 CGAATAGTGGGCACATAGCTACA 60.244 47.826 0.00 0.00 44.79 2.74
728 879 2.109425 AACTTCCGAATAGTGGGCAC 57.891 50.000 0.00 0.00 0.00 5.01
836 1027 3.771160 GGGATCGCGGTGACCACT 61.771 66.667 6.13 0.00 0.00 4.00
1051 1243 1.721926 CTCTGTTTTCTTCGCCTCGAC 59.278 52.381 0.00 0.00 34.89 4.20
1234 1494 1.953559 GCATTAGGCGACAGGATCAA 58.046 50.000 0.00 0.00 0.00 2.57
1435 1695 0.800012 TGTCGTCGTCATCATCGTCA 59.200 50.000 0.00 0.00 0.00 4.35
1436 1696 1.578023 GTTGTCGTCGTCATCATCGTC 59.422 52.381 0.00 0.00 0.00 4.20
1437 1697 1.614385 GTTGTCGTCGTCATCATCGT 58.386 50.000 0.00 0.00 0.00 3.73
1438 1698 0.561593 CGTTGTCGTCGTCATCATCG 59.438 55.000 0.00 0.00 0.00 3.84
1439 1699 1.891178 TCGTTGTCGTCGTCATCATC 58.109 50.000 0.00 0.00 38.33 2.92
1440 1700 2.159435 TCATCGTTGTCGTCGTCATCAT 60.159 45.455 0.00 0.00 38.33 2.45
1447 1707 1.191944 CATCCTCATCGTTGTCGTCG 58.808 55.000 0.00 0.00 38.33 5.12
1454 1714 4.677673 TGTCATCATCATCCTCATCGTT 57.322 40.909 0.00 0.00 0.00 3.85
1563 1832 9.979270 CTCACTCTGTTATTATTTTCACATGTC 57.021 33.333 0.00 0.00 0.00 3.06
1635 1904 3.193479 GGCAAAGACAATCCAACCCTAAG 59.807 47.826 0.00 0.00 0.00 2.18
1687 1956 9.309224 ACTATAGATATGTACACATGCTACCAA 57.691 33.333 6.78 0.00 37.15 3.67
1817 2093 0.178929 AAACTCTCTCCCCGGTGACT 60.179 55.000 0.00 0.00 0.00 3.41
1828 2104 2.118403 TTCAGGTGGGGAAACTCTCT 57.882 50.000 0.00 0.00 0.00 3.10
2035 2311 3.324108 GGGCCGTGGGGTTCTACA 61.324 66.667 0.00 0.00 34.97 2.74
2040 2316 4.926162 GGTTTGGGCCGTGGGGTT 62.926 66.667 0.00 0.00 34.97 4.11
2361 2761 6.360618 TCTGCACTCTATGTCATCTCTCTAA 58.639 40.000 0.00 0.00 0.00 2.10
2371 2771 5.751028 GGTGAACTTATCTGCACTCTATGTC 59.249 44.000 0.00 0.00 0.00 3.06
2435 2836 2.936912 GCACTCACGCCACTCCTCT 61.937 63.158 0.00 0.00 0.00 3.69
2485 2886 2.000290 TGGGGATGGGGAGAAATCTT 58.000 50.000 0.00 0.00 0.00 2.40
2535 2943 4.386951 CGCCGTGTCCCACCATGA 62.387 66.667 0.00 0.00 0.00 3.07
2697 3108 1.557443 CGTCACTGGTTTGCTCGTCC 61.557 60.000 0.00 0.00 0.00 4.79
2706 3117 0.601311 GCTGCTCTTCGTCACTGGTT 60.601 55.000 0.00 0.00 0.00 3.67
2708 3119 1.005748 TGCTGCTCTTCGTCACTGG 60.006 57.895 0.00 0.00 0.00 4.00
2710 3121 0.894141 ATCTGCTGCTCTTCGTCACT 59.106 50.000 0.00 0.00 0.00 3.41
2725 3136 2.892425 GCCCTGCGTTCCGATCTG 60.892 66.667 0.00 0.00 0.00 2.90
2740 3157 4.514585 TGGTGGTGGGTGTGTGCC 62.515 66.667 0.00 0.00 0.00 5.01
2745 3162 4.562425 CTGCGTGGTGGTGGGTGT 62.562 66.667 0.00 0.00 0.00 4.16
2775 3192 2.402572 CCTCTCGCTGCGTCTCAGA 61.403 63.158 22.48 15.60 45.72 3.27
2777 3194 4.121669 GCCTCTCGCTGCGTCTCA 62.122 66.667 22.48 0.94 0.00 3.27
2848 3265 1.802069 GGCTCGAAGTTCTCTGCTTT 58.198 50.000 0.56 0.00 0.00 3.51
2939 3356 3.785859 GCTCACCAGATCCCGCCA 61.786 66.667 0.00 0.00 0.00 5.69
2952 3369 1.300931 GTGGCTCTCGTGTTGCTCA 60.301 57.895 0.00 0.00 0.00 4.26
2963 3380 2.932234 CGTCGTTGGGAGTGGCTCT 61.932 63.158 0.00 0.00 0.00 4.09
3371 3796 8.443176 AGAGAATATCCCAATGATTTTCAGCTA 58.557 33.333 7.69 0.00 41.32 3.32
3489 3917 7.221067 GTCACAGCACAGTACAAAGACTATATC 59.779 40.741 0.00 0.00 0.00 1.63
3516 3945 8.114331 ACAGCACAAAAGATCTTTCAATATCA 57.886 30.769 20.71 0.00 31.45 2.15
3743 4427 2.168936 ACATAGTGCAATGCCCATTTGG 59.831 45.455 1.53 0.00 37.09 3.28
3837 4522 8.887036 TTTAACACTACCTAGCACATATGATG 57.113 34.615 10.38 5.38 0.00 3.07
4134 4825 5.315982 CACGCTGTGTAAGTGATTGTAATG 58.684 41.667 0.00 0.00 38.83 1.90
4367 5058 0.608308 CATCATGCTCCATGCCCGAT 60.608 55.000 0.44 0.00 41.18 4.18
4421 5112 2.743636 TCACCAACTCGATGTCCTTC 57.256 50.000 0.00 0.00 0.00 3.46
4434 5125 1.302431 CCGCCTGTGTCATCACCAA 60.302 57.895 0.00 0.00 43.26 3.67
4543 5234 5.682943 TCAACTAGTTCCAAAAATGTCGG 57.317 39.130 4.77 0.00 0.00 4.79
4702 5397 3.138625 CACTGACAGGTCCGTGGT 58.861 61.111 13.99 0.00 39.92 4.16
4711 5407 2.624838 AGAAAATTGCCACCACTGACAG 59.375 45.455 0.00 0.00 0.00 3.51
4817 5513 5.431765 CTGCTTCACAGTTATAGTCCCATT 58.568 41.667 0.00 0.00 41.86 3.16
4834 5530 5.050023 AGCTTCTTCGTTTTCTTACTGCTTC 60.050 40.000 0.00 0.00 0.00 3.86
4854 5550 3.942748 TCAAACCGTTGTTACTTCAGCTT 59.057 39.130 0.00 0.00 36.07 3.74
4855 5551 3.537580 TCAAACCGTTGTTACTTCAGCT 58.462 40.909 0.00 0.00 36.07 4.24
4856 5552 3.955771 TCAAACCGTTGTTACTTCAGC 57.044 42.857 0.00 0.00 36.07 4.26
4867 5563 1.356527 GCGGACGCTATCAAACCGTT 61.357 55.000 9.76 0.00 44.48 4.44
4896 5592 1.861542 TTTGGTTCGATGCCGGCAAG 61.862 55.000 36.33 29.20 36.24 4.01
4906 5603 6.041296 GGAGGGAGTACTATAATTTGGTTCGA 59.959 42.308 0.00 0.00 0.00 3.71
4917 5614 5.912149 TTAGGAACGGAGGGAGTACTATA 57.088 43.478 0.00 0.00 0.00 1.31
4923 5620 5.484290 CCATATATTTAGGAACGGAGGGAGT 59.516 44.000 0.00 0.00 0.00 3.85
4924 5621 5.484290 ACCATATATTTAGGAACGGAGGGAG 59.516 44.000 0.00 0.00 0.00 4.30
4926 5623 5.012768 ACACCATATATTTAGGAACGGAGGG 59.987 44.000 0.00 0.00 0.00 4.30
4927 5624 6.110411 ACACCATATATTTAGGAACGGAGG 57.890 41.667 0.00 0.00 0.00 4.30
4928 5625 9.151471 CAATACACCATATATTTAGGAACGGAG 57.849 37.037 0.00 0.00 0.00 4.63
4930 5627 8.842358 ACAATACACCATATATTTAGGAACGG 57.158 34.615 0.00 0.00 0.00 4.44
4938 5635 9.377312 GTGCCAAAAACAATACACCATATATTT 57.623 29.630 0.00 0.00 0.00 1.40
4939 5636 7.704472 CGTGCCAAAAACAATACACCATATATT 59.296 33.333 0.00 0.00 0.00 1.28
4940 5637 7.199766 CGTGCCAAAAACAATACACCATATAT 58.800 34.615 0.00 0.00 0.00 0.86
4941 5638 6.404844 CCGTGCCAAAAACAATACACCATATA 60.405 38.462 0.00 0.00 0.00 0.86
4942 5639 5.406649 CGTGCCAAAAACAATACACCATAT 58.593 37.500 0.00 0.00 0.00 1.78
4943 5640 4.321304 CCGTGCCAAAAACAATACACCATA 60.321 41.667 0.00 0.00 0.00 2.74
4944 5641 3.553922 CCGTGCCAAAAACAATACACCAT 60.554 43.478 0.00 0.00 0.00 3.55
4945 5642 2.223829 CCGTGCCAAAAACAATACACCA 60.224 45.455 0.00 0.00 0.00 4.17
4946 5643 2.034812 TCCGTGCCAAAAACAATACACC 59.965 45.455 0.00 0.00 0.00 4.16
4947 5644 3.357166 TCCGTGCCAAAAACAATACAC 57.643 42.857 0.00 0.00 0.00 2.90
4948 5645 4.386867 TTTCCGTGCCAAAAACAATACA 57.613 36.364 0.00 0.00 0.00 2.29
4949 5646 5.915812 AATTTCCGTGCCAAAAACAATAC 57.084 34.783 0.00 0.00 0.00 1.89
4950 5647 7.926555 TCTTTAATTTCCGTGCCAAAAACAATA 59.073 29.630 0.00 0.00 0.00 1.90
4951 5648 6.763610 TCTTTAATTTCCGTGCCAAAAACAAT 59.236 30.769 0.00 0.00 0.00 2.71
4952 5649 6.106673 TCTTTAATTTCCGTGCCAAAAACAA 58.893 32.000 0.00 0.00 0.00 2.83
4953 5650 5.661458 TCTTTAATTTCCGTGCCAAAAACA 58.339 33.333 0.00 0.00 0.00 2.83
4954 5651 6.415702 GTTCTTTAATTTCCGTGCCAAAAAC 58.584 36.000 0.00 0.00 0.00 2.43
4955 5652 5.232414 CGTTCTTTAATTTCCGTGCCAAAAA 59.768 36.000 0.00 0.00 0.00 1.94
4956 5653 4.740695 CGTTCTTTAATTTCCGTGCCAAAA 59.259 37.500 0.00 0.00 0.00 2.44
4957 5654 4.291783 CGTTCTTTAATTTCCGTGCCAAA 58.708 39.130 0.00 0.00 0.00 3.28
4958 5655 3.854045 GCGTTCTTTAATTTCCGTGCCAA 60.854 43.478 0.00 0.00 0.00 4.52
4959 5656 2.350964 GCGTTCTTTAATTTCCGTGCCA 60.351 45.455 0.00 0.00 0.00 4.92
4960 5657 2.247637 GCGTTCTTTAATTTCCGTGCC 58.752 47.619 0.00 0.00 0.00 5.01
4961 5658 2.655001 GTGCGTTCTTTAATTTCCGTGC 59.345 45.455 0.00 0.00 0.00 5.34
4962 5659 2.900046 CGTGCGTTCTTTAATTTCCGTG 59.100 45.455 0.00 0.00 0.00 4.94
4963 5660 2.545106 ACGTGCGTTCTTTAATTTCCGT 59.455 40.909 0.00 0.00 0.00 4.69
4964 5661 2.900046 CACGTGCGTTCTTTAATTTCCG 59.100 45.455 0.82 0.00 0.00 4.30
4965 5662 3.058777 TCCACGTGCGTTCTTTAATTTCC 60.059 43.478 10.91 0.00 0.00 3.13
4966 5663 4.136517 TCCACGTGCGTTCTTTAATTTC 57.863 40.909 10.91 0.00 0.00 2.17
4967 5664 3.058501 CCTCCACGTGCGTTCTTTAATTT 60.059 43.478 10.91 0.00 0.00 1.82
4968 5665 2.482721 CCTCCACGTGCGTTCTTTAATT 59.517 45.455 10.91 0.00 0.00 1.40
4969 5666 2.073816 CCTCCACGTGCGTTCTTTAAT 58.926 47.619 10.91 0.00 0.00 1.40
4970 5667 1.504359 CCTCCACGTGCGTTCTTTAA 58.496 50.000 10.91 0.00 0.00 1.52
4971 5668 0.320073 CCCTCCACGTGCGTTCTTTA 60.320 55.000 10.91 0.00 0.00 1.85
4972 5669 1.597027 CCCTCCACGTGCGTTCTTT 60.597 57.895 10.91 0.00 0.00 2.52
4973 5670 2.030562 CCCTCCACGTGCGTTCTT 59.969 61.111 10.91 0.00 0.00 2.52
4974 5671 2.035237 TTTCCCTCCACGTGCGTTCT 62.035 55.000 10.91 0.00 0.00 3.01
4975 5672 1.161563 TTTTCCCTCCACGTGCGTTC 61.162 55.000 10.91 0.00 0.00 3.95
4976 5673 0.536460 ATTTTCCCTCCACGTGCGTT 60.536 50.000 10.91 0.00 0.00 4.84
4977 5674 0.536460 AATTTTCCCTCCACGTGCGT 60.536 50.000 10.91 0.00 0.00 5.24
4978 5675 0.596082 AAATTTTCCCTCCACGTGCG 59.404 50.000 10.91 3.66 0.00 5.34
4979 5676 1.611491 TGAAATTTTCCCTCCACGTGC 59.389 47.619 10.91 0.00 0.00 5.34
4980 5677 5.183140 ACTTATGAAATTTTCCCTCCACGTG 59.817 40.000 9.08 9.08 0.00 4.49
4981 5678 5.321927 ACTTATGAAATTTTCCCTCCACGT 58.678 37.500 6.68 0.00 0.00 4.49
4982 5679 5.897377 ACTTATGAAATTTTCCCTCCACG 57.103 39.130 6.68 0.00 0.00 4.94
4983 5680 7.387673 CCAAAACTTATGAAATTTTCCCTCCAC 59.612 37.037 6.68 0.00 0.00 4.02
4984 5681 7.449247 CCAAAACTTATGAAATTTTCCCTCCA 58.551 34.615 6.68 0.00 0.00 3.86
4985 5682 6.878923 CCCAAAACTTATGAAATTTTCCCTCC 59.121 38.462 6.68 0.00 0.00 4.30
4986 5683 7.450074 ACCCAAAACTTATGAAATTTTCCCTC 58.550 34.615 6.68 0.00 0.00 4.30
4987 5684 7.071824 TGACCCAAAACTTATGAAATTTTCCCT 59.928 33.333 6.68 0.00 0.00 4.20
4988 5685 7.220740 TGACCCAAAACTTATGAAATTTTCCC 58.779 34.615 6.68 0.00 0.00 3.97
4989 5686 8.147704 TCTGACCCAAAACTTATGAAATTTTCC 58.852 33.333 6.68 0.00 0.00 3.13
4990 5687 9.710900 ATCTGACCCAAAACTTATGAAATTTTC 57.289 29.630 2.05 2.05 0.00 2.29
4994 5691 9.308000 TGTAATCTGACCCAAAACTTATGAAAT 57.692 29.630 0.00 0.00 0.00 2.17
4995 5692 8.573035 GTGTAATCTGACCCAAAACTTATGAAA 58.427 33.333 0.00 0.00 0.00 2.69
4996 5693 7.175990 GGTGTAATCTGACCCAAAACTTATGAA 59.824 37.037 0.00 0.00 0.00 2.57
4997 5694 6.657541 GGTGTAATCTGACCCAAAACTTATGA 59.342 38.462 0.00 0.00 0.00 2.15
4998 5695 6.659242 AGGTGTAATCTGACCCAAAACTTATG 59.341 38.462 0.00 0.00 32.03 1.90
4999 5696 6.659242 CAGGTGTAATCTGACCCAAAACTTAT 59.341 38.462 0.00 0.00 34.36 1.73
5000 5697 6.001460 CAGGTGTAATCTGACCCAAAACTTA 58.999 40.000 0.00 0.00 34.36 2.24
5001 5698 4.827284 CAGGTGTAATCTGACCCAAAACTT 59.173 41.667 0.00 0.00 34.36 2.66
5002 5699 4.104102 TCAGGTGTAATCTGACCCAAAACT 59.896 41.667 0.00 0.00 36.46 2.66
5003 5700 4.394729 TCAGGTGTAATCTGACCCAAAAC 58.605 43.478 0.00 0.00 36.46 2.43
5004 5701 4.715534 TCAGGTGTAATCTGACCCAAAA 57.284 40.909 0.00 0.00 36.46 2.44
5011 5708 7.097192 GTGTCAATTAGTCAGGTGTAATCTGA 58.903 38.462 0.00 0.00 38.75 3.27
5012 5709 6.035005 CGTGTCAATTAGTCAGGTGTAATCTG 59.965 42.308 0.00 0.00 0.00 2.90
5013 5710 6.071560 TCGTGTCAATTAGTCAGGTGTAATCT 60.072 38.462 0.00 0.00 0.00 2.40
5014 5711 6.097356 TCGTGTCAATTAGTCAGGTGTAATC 58.903 40.000 0.00 0.00 0.00 1.75
5015 5712 6.032956 TCGTGTCAATTAGTCAGGTGTAAT 57.967 37.500 0.00 0.00 0.00 1.89
5016 5713 5.456548 TCGTGTCAATTAGTCAGGTGTAA 57.543 39.130 0.00 0.00 0.00 2.41
5017 5714 5.456548 TTCGTGTCAATTAGTCAGGTGTA 57.543 39.130 0.00 0.00 0.00 2.90
5018 5715 4.330944 TTCGTGTCAATTAGTCAGGTGT 57.669 40.909 0.00 0.00 0.00 4.16
5019 5716 5.666969 TTTTCGTGTCAATTAGTCAGGTG 57.333 39.130 0.00 0.00 0.00 4.00
5041 5738 9.678260 CCTTATATTATGCAAGCTCCTCTATTT 57.322 33.333 0.00 0.00 0.00 1.40
5042 5739 9.051259 TCCTTATATTATGCAAGCTCCTCTATT 57.949 33.333 0.00 0.00 0.00 1.73
5043 5740 8.615360 TCCTTATATTATGCAAGCTCCTCTAT 57.385 34.615 0.00 0.00 0.00 1.98
5044 5741 8.435931 TTCCTTATATTATGCAAGCTCCTCTA 57.564 34.615 0.00 0.00 0.00 2.43
5045 5742 6.942163 TCCTTATATTATGCAAGCTCCTCT 57.058 37.500 0.00 0.00 0.00 3.69
5046 5743 7.120432 CCTTTCCTTATATTATGCAAGCTCCTC 59.880 40.741 0.00 0.00 0.00 3.71
5047 5744 6.944862 CCTTTCCTTATATTATGCAAGCTCCT 59.055 38.462 0.00 0.00 0.00 3.69
5048 5745 6.717084 ACCTTTCCTTATATTATGCAAGCTCC 59.283 38.462 0.00 0.00 0.00 4.70
5049 5746 7.751768 ACCTTTCCTTATATTATGCAAGCTC 57.248 36.000 0.00 0.00 0.00 4.09
5050 5747 9.813826 ATTACCTTTCCTTATATTATGCAAGCT 57.186 29.630 0.00 0.00 0.00 3.74
5064 5761 8.966155 TTTTAGGGATTTGATTACCTTTCCTT 57.034 30.769 0.00 0.00 34.59 3.36
5065 5762 8.966155 TTTTTAGGGATTTGATTACCTTTCCT 57.034 30.769 0.00 0.00 34.59 3.36
5090 5787 9.349145 GCGTTATACCACTTGTTTGAATAATTT 57.651 29.630 0.00 0.00 0.00 1.82
5091 5788 8.516234 TGCGTTATACCACTTGTTTGAATAATT 58.484 29.630 0.00 0.00 0.00 1.40
5092 5789 8.046294 TGCGTTATACCACTTGTTTGAATAAT 57.954 30.769 0.00 0.00 0.00 1.28
5093 5790 7.436430 TGCGTTATACCACTTGTTTGAATAA 57.564 32.000 0.00 0.00 0.00 1.40
5094 5791 7.436430 TTGCGTTATACCACTTGTTTGAATA 57.564 32.000 0.00 0.00 0.00 1.75
5095 5792 5.950758 TGCGTTATACCACTTGTTTGAAT 57.049 34.783 0.00 0.00 0.00 2.57
5096 5793 5.752892 TTGCGTTATACCACTTGTTTGAA 57.247 34.783 0.00 0.00 0.00 2.69
5097 5794 5.950758 ATTGCGTTATACCACTTGTTTGA 57.049 34.783 0.00 0.00 0.00 2.69
5098 5795 6.521821 GTGTATTGCGTTATACCACTTGTTTG 59.478 38.462 6.60 0.00 31.38 2.93
5099 5796 6.348704 GGTGTATTGCGTTATACCACTTGTTT 60.349 38.462 6.73 0.00 34.47 2.83
5100 5797 5.122711 GGTGTATTGCGTTATACCACTTGTT 59.877 40.000 6.73 0.00 34.47 2.83
5101 5798 4.632688 GGTGTATTGCGTTATACCACTTGT 59.367 41.667 6.73 0.00 34.47 3.16
5102 5799 4.873827 AGGTGTATTGCGTTATACCACTTG 59.126 41.667 12.23 0.00 36.20 3.16
5103 5800 5.093849 AGGTGTATTGCGTTATACCACTT 57.906 39.130 12.23 1.97 36.20 3.16
5104 5801 4.748277 AGGTGTATTGCGTTATACCACT 57.252 40.909 12.23 3.97 36.20 4.00
5105 5802 8.767478 ATATAAGGTGTATTGCGTTATACCAC 57.233 34.615 12.23 6.18 36.20 4.16
5106 5803 9.781633 AAATATAAGGTGTATTGCGTTATACCA 57.218 29.630 12.23 0.00 36.20 3.25
5110 5807 9.772973 TCTGAAATATAAGGTGTATTGCGTTAT 57.227 29.630 0.00 0.00 33.36 1.89
5111 5808 9.772973 ATCTGAAATATAAGGTGTATTGCGTTA 57.227 29.630 0.00 0.00 0.00 3.18
5112 5809 8.677148 ATCTGAAATATAAGGTGTATTGCGTT 57.323 30.769 0.00 0.00 0.00 4.84
5113 5810 8.677148 AATCTGAAATATAAGGTGTATTGCGT 57.323 30.769 0.00 0.00 0.00 5.24
5114 5811 9.950680 AAAATCTGAAATATAAGGTGTATTGCG 57.049 29.630 0.00 0.00 0.00 4.85
5150 5847 8.750298 CCGTTCCTTGATATAAGGTGTATAGAT 58.250 37.037 5.67 0.00 38.55 1.98
5151 5848 7.946219 TCCGTTCCTTGATATAAGGTGTATAGA 59.054 37.037 5.67 0.00 38.55 1.98
5152 5849 8.118976 TCCGTTCCTTGATATAAGGTGTATAG 57.881 38.462 5.67 0.00 38.55 1.31
5153 5850 7.177921 CCTCCGTTCCTTGATATAAGGTGTATA 59.822 40.741 5.67 0.00 38.55 1.47
5154 5851 6.014499 CCTCCGTTCCTTGATATAAGGTGTAT 60.014 42.308 5.67 0.00 38.55 2.29
5155 5852 5.303589 CCTCCGTTCCTTGATATAAGGTGTA 59.696 44.000 5.67 0.00 38.55 2.90
5156 5853 4.101119 CCTCCGTTCCTTGATATAAGGTGT 59.899 45.833 5.67 0.00 38.55 4.16
5157 5854 4.344102 TCCTCCGTTCCTTGATATAAGGTG 59.656 45.833 5.67 0.00 38.55 4.00
5158 5855 4.553678 TCCTCCGTTCCTTGATATAAGGT 58.446 43.478 5.67 0.00 38.55 3.50
5159 5856 5.070580 ACTTCCTCCGTTCCTTGATATAAGG 59.929 44.000 0.00 0.00 38.78 2.69
5160 5857 6.163135 ACTTCCTCCGTTCCTTGATATAAG 57.837 41.667 0.00 0.00 0.00 1.73
5161 5858 7.850935 ATACTTCCTCCGTTCCTTGATATAA 57.149 36.000 0.00 0.00 0.00 0.98
5162 5859 7.850935 AATACTTCCTCCGTTCCTTGATATA 57.149 36.000 0.00 0.00 0.00 0.86
5163 5860 6.749036 AATACTTCCTCCGTTCCTTGATAT 57.251 37.500 0.00 0.00 0.00 1.63
5164 5861 7.850935 ATAATACTTCCTCCGTTCCTTGATA 57.149 36.000 0.00 0.00 0.00 2.15
5165 5862 6.749036 ATAATACTTCCTCCGTTCCTTGAT 57.251 37.500 0.00 0.00 0.00 2.57
5166 5863 6.555463 AATAATACTTCCTCCGTTCCTTGA 57.445 37.500 0.00 0.00 0.00 3.02
5167 5864 7.625828 AAAATAATACTTCCTCCGTTCCTTG 57.374 36.000 0.00 0.00 0.00 3.61
5168 5865 7.362660 GCAAAAATAATACTTCCTCCGTTCCTT 60.363 37.037 0.00 0.00 0.00 3.36
5169 5866 6.095021 GCAAAAATAATACTTCCTCCGTTCCT 59.905 38.462 0.00 0.00 0.00 3.36
5170 5867 6.095021 AGCAAAAATAATACTTCCTCCGTTCC 59.905 38.462 0.00 0.00 0.00 3.62
5171 5868 6.967199 CAGCAAAAATAATACTTCCTCCGTTC 59.033 38.462 0.00 0.00 0.00 3.95
5172 5869 6.657541 TCAGCAAAAATAATACTTCCTCCGTT 59.342 34.615 0.00 0.00 0.00 4.44
5173 5870 6.177610 TCAGCAAAAATAATACTTCCTCCGT 58.822 36.000 0.00 0.00 0.00 4.69
5174 5871 6.677781 TCAGCAAAAATAATACTTCCTCCG 57.322 37.500 0.00 0.00 0.00 4.63
5175 5872 7.503902 AGGATCAGCAAAAATAATACTTCCTCC 59.496 37.037 0.00 0.00 0.00 4.30
5176 5873 8.457238 AGGATCAGCAAAAATAATACTTCCTC 57.543 34.615 0.00 0.00 0.00 3.71
5177 5874 7.503902 GGAGGATCAGCAAAAATAATACTTCCT 59.496 37.037 0.00 0.00 36.25 3.36
5178 5875 7.285401 TGGAGGATCAGCAAAAATAATACTTCC 59.715 37.037 0.00 0.00 36.25 3.46
5179 5876 8.131731 GTGGAGGATCAGCAAAAATAATACTTC 58.868 37.037 0.00 0.00 36.25 3.01
5180 5877 7.068716 GGTGGAGGATCAGCAAAAATAATACTT 59.931 37.037 0.00 0.00 36.25 2.24
5181 5878 6.547510 GGTGGAGGATCAGCAAAAATAATACT 59.452 38.462 0.00 0.00 36.25 2.12
5182 5879 6.547510 AGGTGGAGGATCAGCAAAAATAATAC 59.452 38.462 0.00 0.00 37.59 1.89
5183 5880 6.672593 AGGTGGAGGATCAGCAAAAATAATA 58.327 36.000 0.00 0.00 37.59 0.98
5184 5881 5.522641 AGGTGGAGGATCAGCAAAAATAAT 58.477 37.500 0.00 0.00 37.59 1.28
5185 5882 4.934356 AGGTGGAGGATCAGCAAAAATAA 58.066 39.130 0.00 0.00 37.59 1.40
5186 5883 4.018506 TGAGGTGGAGGATCAGCAAAAATA 60.019 41.667 0.00 0.00 37.59 1.40
5187 5884 3.245371 TGAGGTGGAGGATCAGCAAAAAT 60.245 43.478 0.00 0.00 37.59 1.82
5188 5885 2.108075 TGAGGTGGAGGATCAGCAAAAA 59.892 45.455 0.00 0.00 37.59 1.94
5189 5886 1.704628 TGAGGTGGAGGATCAGCAAAA 59.295 47.619 0.00 0.00 37.59 2.44
5190 5887 1.361204 TGAGGTGGAGGATCAGCAAA 58.639 50.000 0.00 0.00 37.59 3.68
5191 5888 1.588239 ATGAGGTGGAGGATCAGCAA 58.412 50.000 0.00 0.00 37.59 3.91
5192 5889 1.588239 AATGAGGTGGAGGATCAGCA 58.412 50.000 0.00 0.00 37.59 4.41
5193 5890 2.172293 AGAAATGAGGTGGAGGATCAGC 59.828 50.000 0.00 0.00 36.25 4.26
5194 5891 3.492309 CGAGAAATGAGGTGGAGGATCAG 60.492 52.174 0.00 0.00 36.25 2.90
5195 5892 2.432146 CGAGAAATGAGGTGGAGGATCA 59.568 50.000 0.00 0.00 36.25 2.92
5196 5893 2.224161 CCGAGAAATGAGGTGGAGGATC 60.224 54.545 0.00 0.00 0.00 3.36
5197 5894 1.765314 CCGAGAAATGAGGTGGAGGAT 59.235 52.381 0.00 0.00 0.00 3.24
5229 6316 6.507771 CGATTTGTGTTGTTTGCTTTGTAAGG 60.508 38.462 0.00 0.00 0.00 2.69
5233 6320 4.241681 ACGATTTGTGTTGTTTGCTTTGT 58.758 34.783 0.00 0.00 0.00 2.83
5248 6335 8.679288 AGAAATTTCTTGCTATTGACGATTTG 57.321 30.769 15.11 0.00 32.55 2.32
5270 6357 5.410746 TGATTTTGTTGTTTGCTTGCAAGAA 59.589 32.000 30.39 18.21 0.00 2.52
5306 6394 3.750652 TGTGATTGACATTGTGCACGTAT 59.249 39.130 13.13 5.36 0.00 3.06
5399 6487 4.283467 TGCGGTTGTAGATGCTATTAGGAT 59.717 41.667 0.00 0.00 0.00 3.24
5406 6494 4.038642 TGTCATATGCGGTTGTAGATGCTA 59.961 41.667 0.00 0.00 30.60 3.49
5417 6505 4.326826 CTCCCATATTTGTCATATGCGGT 58.673 43.478 0.00 0.00 32.22 5.68
5431 6519 1.833332 GCCCTACAGGAGCTCCCATAT 60.833 57.143 29.54 14.42 38.24 1.78
5440 6528 1.442148 GTAAGGCGCCCTACAGGAG 59.558 63.158 26.79 0.00 38.24 3.69
5441 6529 2.420568 CGTAAGGCGCCCTACAGGA 61.421 63.158 29.65 4.39 38.24 3.86
5442 6530 2.106332 CGTAAGGCGCCCTACAGG 59.894 66.667 29.65 14.33 39.47 4.00
5452 6540 2.822255 TCAATGGGCGCGTAAGGC 60.822 61.111 8.43 0.00 38.69 4.35
5453 6541 2.808958 CGTCAATGGGCGCGTAAGG 61.809 63.158 8.43 0.00 38.28 2.69
5454 6542 1.151777 ATCGTCAATGGGCGCGTAAG 61.152 55.000 8.43 0.00 43.44 2.34
5455 6543 0.741574 AATCGTCAATGGGCGCGTAA 60.742 50.000 8.43 0.00 0.00 3.18
5456 6544 1.149361 GAATCGTCAATGGGCGCGTA 61.149 55.000 8.43 0.00 0.00 4.42
5457 6545 2.435938 AATCGTCAATGGGCGCGT 60.436 55.556 8.43 0.00 0.00 6.01
5458 6546 2.324477 GAATCGTCAATGGGCGCG 59.676 61.111 0.00 0.00 0.00 6.86
5459 6547 2.324477 CGAATCGTCAATGGGCGC 59.676 61.111 0.00 0.00 0.00 6.53
5460 6548 2.534019 CCCGAATCGTCAATGGGCG 61.534 63.158 0.82 0.00 32.09 6.13
5461 6549 3.420943 CCCGAATCGTCAATGGGC 58.579 61.111 0.82 0.00 32.09 5.36
5462 6550 2.534019 CGCCCGAATCGTCAATGGG 61.534 63.158 0.82 0.00 43.02 4.00
5463 6551 3.014036 CGCCCGAATCGTCAATGG 58.986 61.111 0.82 0.00 0.00 3.16
5464 6552 2.324477 GCGCCCGAATCGTCAATG 59.676 61.111 0.82 0.00 0.00 2.82
5465 6553 2.895372 GGCGCCCGAATCGTCAAT 60.895 61.111 18.11 0.00 0.00 2.57
5503 6591 4.776322 TGCGTCTTCATGGGCCGG 62.776 66.667 0.00 0.00 0.00 6.13
5504 6592 3.197790 CTGCGTCTTCATGGGCCG 61.198 66.667 0.00 0.00 0.00 6.13
5505 6593 2.825836 CCTGCGTCTTCATGGGCC 60.826 66.667 0.00 0.00 0.00 5.80
5506 6594 2.045926 ACCTGCGTCTTCATGGGC 60.046 61.111 0.00 0.00 0.00 5.36
5507 6595 1.021390 GTGACCTGCGTCTTCATGGG 61.021 60.000 0.00 0.00 39.94 4.00
5508 6596 0.036952 AGTGACCTGCGTCTTCATGG 60.037 55.000 0.00 0.00 39.94 3.66
5509 6597 1.073964 CAGTGACCTGCGTCTTCATG 58.926 55.000 0.00 0.00 39.94 3.07
5510 6598 0.969149 TCAGTGACCTGCGTCTTCAT 59.031 50.000 0.00 0.00 39.94 2.57
5511 6599 0.750249 TTCAGTGACCTGCGTCTTCA 59.250 50.000 0.00 0.00 39.94 3.02
5512 6600 1.865865 TTTCAGTGACCTGCGTCTTC 58.134 50.000 0.00 0.00 39.94 2.87
5513 6601 2.325583 TTTTCAGTGACCTGCGTCTT 57.674 45.000 0.00 0.00 39.94 3.01
5514 6602 2.325583 TTTTTCAGTGACCTGCGTCT 57.674 45.000 0.00 0.00 39.94 4.18
5515 6603 2.921126 CATTTTTCAGTGACCTGCGTC 58.079 47.619 0.00 0.00 38.66 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.