Multiple sequence alignment - TraesCS4D01G163400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G163400 | chr4D | 100.000 | 8847 | 0 | 0 | 1 | 8847 | 256548475 | 256557321 | 0.000000e+00 | 16338.0 |
1 | TraesCS4D01G163400 | chr4A | 93.845 | 6986 | 278 | 76 | 1497 | 8381 | 344029226 | 344036160 | 0.000000e+00 | 10379.0 |
2 | TraesCS4D01G163400 | chr4A | 93.878 | 343 | 8 | 1 | 1009 | 1351 | 344028886 | 344029215 | 1.030000e-138 | 505.0 |
3 | TraesCS4D01G163400 | chr4A | 90.756 | 238 | 10 | 5 | 676 | 913 | 344028246 | 344028471 | 3.100000e-79 | 307.0 |
4 | TraesCS4D01G163400 | chr4A | 90.000 | 170 | 9 | 3 | 1338 | 1499 | 116143540 | 116143371 | 6.960000e-51 | 213.0 |
5 | TraesCS4D01G163400 | chr4B | 95.000 | 3540 | 118 | 20 | 1497 | 5027 | 351871124 | 351874613 | 0.000000e+00 | 5502.0 |
6 | TraesCS4D01G163400 | chr4B | 94.158 | 3646 | 115 | 45 | 5180 | 8774 | 351875100 | 351878698 | 0.000000e+00 | 5463.0 |
7 | TraesCS4D01G163400 | chr4B | 95.840 | 649 | 17 | 4 | 710 | 1351 | 351870468 | 351871113 | 0.000000e+00 | 1040.0 |
8 | TraesCS4D01G163400 | chr4B | 82.384 | 562 | 74 | 22 | 67 | 610 | 416117908 | 416118462 | 4.840000e-127 | 466.0 |
9 | TraesCS4D01G163400 | chr4B | 96.711 | 152 | 5 | 0 | 5030 | 5181 | 351874867 | 351875018 | 4.100000e-63 | 254.0 |
10 | TraesCS4D01G163400 | chr4B | 97.959 | 49 | 1 | 0 | 5030 | 5078 | 351874810 | 351874858 | 1.580000e-12 | 86.1 |
11 | TraesCS4D01G163400 | chr4B | 97.826 | 46 | 1 | 0 | 628 | 673 | 351869380 | 351869425 | 7.360000e-11 | 80.5 |
12 | TraesCS4D01G163400 | chr1D | 82.968 | 593 | 72 | 19 | 42 | 610 | 384781068 | 384780481 | 7.920000e-140 | 508.0 |
13 | TraesCS4D01G163400 | chr3A | 83.158 | 570 | 61 | 19 | 62 | 610 | 410116035 | 410116590 | 1.030000e-133 | 488.0 |
14 | TraesCS4D01G163400 | chr3A | 94.558 | 147 | 8 | 0 | 1351 | 1497 | 674734169 | 674734023 | 2.480000e-55 | 228.0 |
15 | TraesCS4D01G163400 | chr3A | 93.421 | 152 | 8 | 1 | 1350 | 1499 | 628192092 | 628191941 | 3.210000e-54 | 224.0 |
16 | TraesCS4D01G163400 | chr3A | 92.949 | 156 | 6 | 2 | 1350 | 1500 | 562100835 | 562100680 | 1.160000e-53 | 222.0 |
17 | TraesCS4D01G163400 | chr3A | 91.824 | 159 | 9 | 3 | 1345 | 1499 | 380910342 | 380910500 | 1.500000e-52 | 219.0 |
18 | TraesCS4D01G163400 | chr3A | 84.076 | 157 | 15 | 7 | 3303 | 3457 | 712231884 | 712231736 | 9.260000e-30 | 143.0 |
19 | TraesCS4D01G163400 | chr3A | 91.304 | 46 | 3 | 1 | 8800 | 8844 | 108372611 | 108372566 | 2.670000e-05 | 62.1 |
20 | TraesCS4D01G163400 | chr3A | 94.872 | 39 | 1 | 1 | 8307 | 8345 | 523315446 | 523315409 | 9.590000e-05 | 60.2 |
21 | TraesCS4D01G163400 | chr1B | 80.915 | 634 | 91 | 20 | 1 | 610 | 629808946 | 629809573 | 2.890000e-129 | 473.0 |
22 | TraesCS4D01G163400 | chr1B | 81.860 | 215 | 32 | 6 | 3242 | 3451 | 320949406 | 320949618 | 3.280000e-39 | 174.0 |
23 | TraesCS4D01G163400 | chr6A | 84.805 | 487 | 54 | 10 | 128 | 608 | 454473448 | 454473920 | 1.040000e-128 | 472.0 |
24 | TraesCS4D01G163400 | chr6A | 93.919 | 148 | 7 | 1 | 1352 | 1499 | 38404620 | 38404475 | 1.160000e-53 | 222.0 |
25 | TraesCS4D01G163400 | chr6B | 82.143 | 560 | 76 | 20 | 67 | 610 | 124993457 | 124992906 | 8.090000e-125 | 459.0 |
26 | TraesCS4D01G163400 | chr5B | 83.929 | 448 | 30 | 18 | 1 | 436 | 272165202 | 272165619 | 2.990000e-104 | 390.0 |
27 | TraesCS4D01G163400 | chr2A | 78.120 | 617 | 82 | 31 | 18 | 610 | 422100122 | 422100709 | 8.510000e-90 | 342.0 |
28 | TraesCS4D01G163400 | chr2A | 94.521 | 146 | 6 | 1 | 1352 | 1497 | 194551858 | 194552001 | 3.210000e-54 | 224.0 |
29 | TraesCS4D01G163400 | chr2A | 84.106 | 151 | 14 | 7 | 3303 | 3451 | 177949655 | 177949797 | 4.310000e-28 | 137.0 |
30 | TraesCS4D01G163400 | chr2A | 93.333 | 45 | 2 | 1 | 8588 | 8631 | 14923417 | 14923373 | 2.060000e-06 | 65.8 |
31 | TraesCS4D01G163400 | chr2A | 92.857 | 42 | 3 | 0 | 8800 | 8841 | 49013865 | 49013824 | 2.670000e-05 | 62.1 |
32 | TraesCS4D01G163400 | chr7A | 78.417 | 556 | 80 | 20 | 67 | 608 | 412892911 | 412893440 | 8.570000e-85 | 326.0 |
33 | TraesCS4D01G163400 | chr7A | 81.340 | 209 | 32 | 6 | 3248 | 3451 | 577686232 | 577686026 | 7.110000e-36 | 163.0 |
34 | TraesCS4D01G163400 | chr7A | 81.043 | 211 | 27 | 10 | 3248 | 3451 | 17869357 | 17869153 | 1.190000e-33 | 156.0 |
35 | TraesCS4D01G163400 | chr1A | 93.960 | 149 | 9 | 0 | 1351 | 1499 | 509012165 | 509012017 | 8.940000e-55 | 226.0 |
36 | TraesCS4D01G163400 | chr1A | 93.464 | 153 | 6 | 4 | 1351 | 1499 | 581543894 | 581544046 | 3.210000e-54 | 224.0 |
37 | TraesCS4D01G163400 | chr2D | 83.028 | 218 | 27 | 10 | 3242 | 3453 | 166152371 | 166152584 | 1.170000e-43 | 189.0 |
38 | TraesCS4D01G163400 | chr2D | 80.000 | 215 | 36 | 5 | 3242 | 3451 | 588451352 | 588451564 | 1.540000e-32 | 152.0 |
39 | TraesCS4D01G163400 | chr2D | 76.023 | 171 | 20 | 9 | 8463 | 8631 | 12776664 | 12776513 | 1.590000e-07 | 69.4 |
40 | TraesCS4D01G163400 | chrUn | 90.476 | 42 | 2 | 1 | 8306 | 8347 | 38423862 | 38423823 | 4.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G163400 | chr4D | 256548475 | 256557321 | 8846 | False | 16338.000000 | 16338 | 100.000000 | 1 | 8847 | 1 | chr4D.!!$F1 | 8846 |
1 | TraesCS4D01G163400 | chr4A | 344028246 | 344036160 | 7914 | False | 3730.333333 | 10379 | 92.826333 | 676 | 8381 | 3 | chr4A.!!$F1 | 7705 |
2 | TraesCS4D01G163400 | chr4B | 351869380 | 351878698 | 9318 | False | 2070.933333 | 5502 | 96.249000 | 628 | 8774 | 6 | chr4B.!!$F2 | 8146 |
3 | TraesCS4D01G163400 | chr4B | 416117908 | 416118462 | 554 | False | 466.000000 | 466 | 82.384000 | 67 | 610 | 1 | chr4B.!!$F1 | 543 |
4 | TraesCS4D01G163400 | chr1D | 384780481 | 384781068 | 587 | True | 508.000000 | 508 | 82.968000 | 42 | 610 | 1 | chr1D.!!$R1 | 568 |
5 | TraesCS4D01G163400 | chr3A | 410116035 | 410116590 | 555 | False | 488.000000 | 488 | 83.158000 | 62 | 610 | 1 | chr3A.!!$F2 | 548 |
6 | TraesCS4D01G163400 | chr1B | 629808946 | 629809573 | 627 | False | 473.000000 | 473 | 80.915000 | 1 | 610 | 1 | chr1B.!!$F2 | 609 |
7 | TraesCS4D01G163400 | chr6B | 124992906 | 124993457 | 551 | True | 459.000000 | 459 | 82.143000 | 67 | 610 | 1 | chr6B.!!$R1 | 543 |
8 | TraesCS4D01G163400 | chr2A | 422100122 | 422100709 | 587 | False | 342.000000 | 342 | 78.120000 | 18 | 610 | 1 | chr2A.!!$F3 | 592 |
9 | TraesCS4D01G163400 | chr7A | 412892911 | 412893440 | 529 | False | 326.000000 | 326 | 78.417000 | 67 | 608 | 1 | chr7A.!!$F1 | 541 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
555 | 598 | 0.108756 | GTAGTGGAGCAGTTCGGGAC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 | F |
823 | 1872 | 0.688487 | CCCACCACTCGTTTTCCCTA | 59.312 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 | F |
2678 | 4061 | 0.322456 | GTGAATGCCACCCTACAGCA | 60.322 | 55.000 | 0.00 | 0.00 | 39.86 | 4.41 | F |
4286 | 5682 | 0.901124 | TGCCTTGCAACAAAAGGTGT | 59.099 | 45.000 | 0.00 | 0.00 | 45.14 | 4.16 | F |
4790 | 6194 | 1.202651 | AGTTGTAAGCGTCTGCAGGTT | 60.203 | 47.619 | 15.13 | 3.84 | 46.23 | 3.50 | F |
5558 | 7299 | 3.114668 | TGCTCGTTTACAGTTGGCTTA | 57.885 | 42.857 | 0.00 | 0.00 | 0.00 | 3.09 | F |
7111 | 8859 | 0.396139 | CTTGCCCCATGTGCTATGGT | 60.396 | 55.000 | 16.14 | 0.00 | 37.48 | 3.55 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1623 | 2995 | 1.135972 | GCAGACCAATTACTGTGCACG | 60.136 | 52.381 | 13.13 | 9.67 | 36.62 | 5.34 | R |
2700 | 4083 | 0.458669 | GCAGTTAAGCATGGCAGCAT | 59.541 | 50.000 | 10.71 | 2.60 | 36.85 | 3.79 | R |
4566 | 5963 | 1.111277 | ACACAAGCTCCCCAACAAAC | 58.889 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 | R |
5108 | 6765 | 1.455822 | ATCTTCAACAAGGACCCCCA | 58.544 | 50.000 | 0.00 | 0.00 | 33.88 | 4.96 | R |
5822 | 7563 | 6.035975 | ACAGCAAAAACAGCAAACAATAACTC | 59.964 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 | R |
7365 | 9116 | 1.202498 | GGACGGACTACATGCCTAACC | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 2.85 | R |
8789 | 10617 | 0.038166 | TGATGAAGTGGCCCCTCAAC | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 1.141665 | CAGGATGATGGCGACGACA | 59.858 | 57.895 | 5.51 | 5.51 | 39.69 | 4.35 |
27 | 28 | 0.249615 | CAGGATGATGGCGACGACAT | 60.250 | 55.000 | 17.96 | 17.96 | 39.69 | 3.06 |
28 | 29 | 0.465705 | AGGATGATGGCGACGACATT | 59.534 | 50.000 | 19.04 | 1.83 | 27.61 | 2.71 |
117 | 128 | 0.462047 | GCCCATCATTCGTTCGACCT | 60.462 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
118 | 129 | 1.290203 | CCCATCATTCGTTCGACCTG | 58.710 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
184 | 199 | 4.872552 | GGAAAAGCTTCAACCAGCATGGA | 61.873 | 47.826 | 0.00 | 0.00 | 46.72 | 3.41 |
231 | 247 | 4.994471 | CACTGAGTGCTGCGGCCA | 62.994 | 66.667 | 16.57 | 4.79 | 37.74 | 5.36 |
318 | 337 | 3.237290 | GCGTTTTGCTACGACGGT | 58.763 | 55.556 | 10.06 | 0.00 | 43.99 | 4.83 |
321 | 340 | 0.578211 | CGTTTTGCTACGACGGTGTT | 59.422 | 50.000 | 0.00 | 0.00 | 43.99 | 3.32 |
328 | 347 | 1.593933 | GCTACGACGGTGTTGTTTTGA | 59.406 | 47.619 | 0.00 | 0.00 | 31.92 | 2.69 |
357 | 376 | 0.620556 | AGGCGACATCCTGTTGGAAT | 59.379 | 50.000 | 0.00 | 0.00 | 46.80 | 3.01 |
369 | 388 | 2.642254 | TTGGAATCGGCGAGGACGT | 61.642 | 57.895 | 17.22 | 0.00 | 41.98 | 4.34 |
464 | 500 | 2.025441 | GGCAGCGCAACGTGAAAA | 59.975 | 55.556 | 11.47 | 0.00 | 0.00 | 2.29 |
465 | 501 | 1.587613 | GGCAGCGCAACGTGAAAAA | 60.588 | 52.632 | 11.47 | 0.00 | 0.00 | 1.94 |
517 | 553 | 1.522580 | GGCTGCTCGGGATGAACTC | 60.523 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
555 | 598 | 0.108756 | GTAGTGGAGCAGTTCGGGAC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
600 | 643 | 2.577644 | GAATCGTACGTGCGCGGA | 60.578 | 61.111 | 25.20 | 13.98 | 43.45 | 5.54 |
615 | 658 | 4.203076 | GGATAGACCGGCGCGTGT | 62.203 | 66.667 | 8.43 | 0.00 | 0.00 | 4.49 |
616 | 659 | 2.654404 | GATAGACCGGCGCGTGTC | 60.654 | 66.667 | 17.32 | 17.32 | 0.00 | 3.67 |
617 | 660 | 3.405592 | GATAGACCGGCGCGTGTCA | 62.406 | 63.158 | 24.15 | 13.67 | 32.50 | 3.58 |
618 | 661 | 3.411418 | ATAGACCGGCGCGTGTCAG | 62.411 | 63.158 | 24.15 | 0.00 | 32.50 | 3.51 |
661 | 704 | 7.701539 | AGTAGATGATGGTTTGTGCAATTTA | 57.298 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
696 | 750 | 0.749091 | TACTCTGCTACCGGCGCTAA | 60.749 | 55.000 | 16.19 | 4.87 | 45.43 | 3.09 |
823 | 1872 | 0.688487 | CCCACCACTCGTTTTCCCTA | 59.312 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
852 | 1901 | 1.143073 | GCCCCGTTTATTCCATCTCCT | 59.857 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
972 | 2028 | 1.627297 | AAGCCCCGATCTCCTTCACC | 61.627 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1010 | 2378 | 5.466728 | CCAGATCGTTGTTTATGAGGTATGG | 59.533 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1175 | 2543 | 4.704540 | TGGTGGCGATAGTTCATGATTTTT | 59.295 | 37.500 | 0.00 | 0.00 | 39.35 | 1.94 |
1188 | 2556 | 2.899976 | TGATTTTTGCGCTCTCGGATA | 58.100 | 42.857 | 9.73 | 0.00 | 35.55 | 2.59 |
1190 | 2558 | 2.380084 | TTTTTGCGCTCTCGGATACT | 57.620 | 45.000 | 9.73 | 0.00 | 35.55 | 2.12 |
1205 | 2573 | 3.552890 | CGGATACTGCAATCGATTCTGGA | 60.553 | 47.826 | 7.92 | 0.00 | 0.00 | 3.86 |
1351 | 2719 | 9.608617 | GTAAGTGTTTTCCTGCTTATTAAGAAC | 57.391 | 33.333 | 7.63 | 2.76 | 0.00 | 3.01 |
1352 | 2720 | 7.817418 | AGTGTTTTCCTGCTTATTAAGAACA | 57.183 | 32.000 | 7.63 | 5.12 | 0.00 | 3.18 |
1355 | 2723 | 8.135529 | GTGTTTTCCTGCTTATTAAGAACAGTT | 58.864 | 33.333 | 7.63 | 0.00 | 0.00 | 3.16 |
1356 | 2724 | 8.691797 | TGTTTTCCTGCTTATTAAGAACAGTTT | 58.308 | 29.630 | 7.63 | 0.00 | 0.00 | 2.66 |
1357 | 2725 | 9.529325 | GTTTTCCTGCTTATTAAGAACAGTTTT | 57.471 | 29.630 | 7.63 | 0.00 | 0.00 | 2.43 |
1358 | 2726 | 9.528018 | TTTTCCTGCTTATTAAGAACAGTTTTG | 57.472 | 29.630 | 7.63 | 0.00 | 0.00 | 2.44 |
1359 | 2727 | 6.677913 | TCCTGCTTATTAAGAACAGTTTTGC | 58.322 | 36.000 | 7.63 | 0.00 | 0.00 | 3.68 |
1360 | 2728 | 6.490040 | TCCTGCTTATTAAGAACAGTTTTGCT | 59.510 | 34.615 | 7.63 | 0.00 | 0.00 | 3.91 |
1361 | 2729 | 7.663905 | TCCTGCTTATTAAGAACAGTTTTGCTA | 59.336 | 33.333 | 7.63 | 0.00 | 0.00 | 3.49 |
1362 | 2730 | 8.296713 | CCTGCTTATTAAGAACAGTTTTGCTAA | 58.703 | 33.333 | 7.63 | 0.00 | 0.00 | 3.09 |
1363 | 2731 | 9.677567 | CTGCTTATTAAGAACAGTTTTGCTAAA | 57.322 | 29.630 | 7.63 | 0.00 | 0.00 | 1.85 |
1364 | 2732 | 9.677567 | TGCTTATTAAGAACAGTTTTGCTAAAG | 57.322 | 29.630 | 7.63 | 0.00 | 0.00 | 1.85 |
1365 | 2733 | 8.639428 | GCTTATTAAGAACAGTTTTGCTAAAGC | 58.361 | 33.333 | 7.63 | 0.00 | 42.50 | 3.51 |
1392 | 2760 | 8.837788 | CATCTAGATGTTCCATAAGTATTGCA | 57.162 | 34.615 | 22.42 | 0.00 | 34.23 | 4.08 |
1393 | 2761 | 8.715998 | CATCTAGATGTTCCATAAGTATTGCAC | 58.284 | 37.037 | 22.42 | 0.00 | 34.23 | 4.57 |
1394 | 2762 | 7.791029 | TCTAGATGTTCCATAAGTATTGCACA | 58.209 | 34.615 | 0.00 | 0.00 | 0.00 | 4.57 |
1395 | 2763 | 8.432013 | TCTAGATGTTCCATAAGTATTGCACAT | 58.568 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
1396 | 2764 | 7.502120 | AGATGTTCCATAAGTATTGCACATC | 57.498 | 36.000 | 6.91 | 6.91 | 39.62 | 3.06 |
1397 | 2765 | 7.285566 | AGATGTTCCATAAGTATTGCACATCT | 58.714 | 34.615 | 10.08 | 10.08 | 42.98 | 2.90 |
1398 | 2766 | 8.432013 | AGATGTTCCATAAGTATTGCACATCTA | 58.568 | 33.333 | 12.72 | 0.00 | 44.89 | 1.98 |
1399 | 2767 | 8.978874 | ATGTTCCATAAGTATTGCACATCTAA | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
1400 | 2768 | 8.437360 | TGTTCCATAAGTATTGCACATCTAAG | 57.563 | 34.615 | 0.00 | 0.00 | 0.00 | 2.18 |
1401 | 2769 | 8.046708 | TGTTCCATAAGTATTGCACATCTAAGT | 58.953 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1402 | 2770 | 8.552034 | GTTCCATAAGTATTGCACATCTAAGTC | 58.448 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
1403 | 2771 | 7.217200 | TCCATAAGTATTGCACATCTAAGTCC | 58.783 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
1404 | 2772 | 7.071196 | TCCATAAGTATTGCACATCTAAGTCCT | 59.929 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
1405 | 2773 | 8.367911 | CCATAAGTATTGCACATCTAAGTCCTA | 58.632 | 37.037 | 0.00 | 0.00 | 0.00 | 2.94 |
1406 | 2774 | 9.935241 | CATAAGTATTGCACATCTAAGTCCTAT | 57.065 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1407 | 2775 | 9.935241 | ATAAGTATTGCACATCTAAGTCCTATG | 57.065 | 33.333 | 0.00 | 0.00 | 0.00 | 2.23 |
1408 | 2776 | 7.366847 | AGTATTGCACATCTAAGTCCTATGT | 57.633 | 36.000 | 0.00 | 0.00 | 34.22 | 2.29 |
1417 | 2785 | 8.489676 | ACATCTAAGTCCTATGTGATTGATCT | 57.510 | 34.615 | 0.00 | 0.00 | 32.74 | 2.75 |
1418 | 2786 | 8.932610 | ACATCTAAGTCCTATGTGATTGATCTT | 58.067 | 33.333 | 0.00 | 0.00 | 32.74 | 2.40 |
1421 | 2789 | 8.568794 | TCTAAGTCCTATGTGATTGATCTTACG | 58.431 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
1422 | 2790 | 6.716934 | AGTCCTATGTGATTGATCTTACGT | 57.283 | 37.500 | 0.00 | 0.00 | 0.00 | 3.57 |
1423 | 2791 | 7.113658 | AGTCCTATGTGATTGATCTTACGTT | 57.886 | 36.000 | 0.00 | 0.00 | 0.00 | 3.99 |
1424 | 2792 | 6.980978 | AGTCCTATGTGATTGATCTTACGTTG | 59.019 | 38.462 | 0.00 | 0.00 | 0.00 | 4.10 |
1425 | 2793 | 6.978659 | GTCCTATGTGATTGATCTTACGTTGA | 59.021 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1426 | 2794 | 7.168302 | GTCCTATGTGATTGATCTTACGTTGAG | 59.832 | 40.741 | 0.00 | 0.00 | 0.00 | 3.02 |
1427 | 2795 | 7.068226 | TCCTATGTGATTGATCTTACGTTGAGA | 59.932 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
1428 | 2796 | 7.869937 | CCTATGTGATTGATCTTACGTTGAGAT | 59.130 | 37.037 | 12.34 | 12.34 | 36.60 | 2.75 |
1429 | 2797 | 9.254133 | CTATGTGATTGATCTTACGTTGAGATT | 57.746 | 33.333 | 13.35 | 1.29 | 34.13 | 2.40 |
1430 | 2798 | 7.525688 | TGTGATTGATCTTACGTTGAGATTC | 57.474 | 36.000 | 13.35 | 9.08 | 34.13 | 2.52 |
1431 | 2799 | 6.253512 | TGTGATTGATCTTACGTTGAGATTCG | 59.746 | 38.462 | 13.35 | 0.00 | 34.13 | 3.34 |
1432 | 2800 | 6.253727 | GTGATTGATCTTACGTTGAGATTCGT | 59.746 | 38.462 | 13.35 | 0.00 | 42.82 | 3.85 |
1433 | 2801 | 6.253512 | TGATTGATCTTACGTTGAGATTCGTG | 59.746 | 38.462 | 13.35 | 0.00 | 40.50 | 4.35 |
1434 | 2802 | 5.055642 | TGATCTTACGTTGAGATTCGTGT | 57.944 | 39.130 | 13.35 | 0.00 | 40.50 | 4.49 |
1435 | 2803 | 4.857037 | TGATCTTACGTTGAGATTCGTGTG | 59.143 | 41.667 | 13.35 | 0.00 | 40.50 | 3.82 |
1436 | 2804 | 3.571571 | TCTTACGTTGAGATTCGTGTGG | 58.428 | 45.455 | 0.00 | 0.00 | 40.50 | 4.17 |
1437 | 2805 | 3.253921 | TCTTACGTTGAGATTCGTGTGGA | 59.746 | 43.478 | 0.00 | 0.00 | 40.50 | 4.02 |
1438 | 2806 | 2.743636 | ACGTTGAGATTCGTGTGGAT | 57.256 | 45.000 | 0.00 | 0.00 | 38.85 | 3.41 |
1439 | 2807 | 3.861276 | ACGTTGAGATTCGTGTGGATA | 57.139 | 42.857 | 0.00 | 0.00 | 38.85 | 2.59 |
1440 | 2808 | 4.386867 | ACGTTGAGATTCGTGTGGATAT | 57.613 | 40.909 | 0.00 | 0.00 | 38.85 | 1.63 |
1441 | 2809 | 4.755411 | ACGTTGAGATTCGTGTGGATATT | 58.245 | 39.130 | 0.00 | 0.00 | 38.85 | 1.28 |
1442 | 2810 | 5.175859 | ACGTTGAGATTCGTGTGGATATTT | 58.824 | 37.500 | 0.00 | 0.00 | 38.85 | 1.40 |
1443 | 2811 | 5.642063 | ACGTTGAGATTCGTGTGGATATTTT | 59.358 | 36.000 | 0.00 | 0.00 | 38.85 | 1.82 |
1444 | 2812 | 6.148811 | ACGTTGAGATTCGTGTGGATATTTTT | 59.851 | 34.615 | 0.00 | 0.00 | 38.85 | 1.94 |
1467 | 2835 | 7.832503 | TTTTTCCTTTTTCTCTTTCTGCTTG | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1468 | 2836 | 6.773976 | TTTCCTTTTTCTCTTTCTGCTTGA | 57.226 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
1469 | 2837 | 6.966534 | TTCCTTTTTCTCTTTCTGCTTGAT | 57.033 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1470 | 2838 | 6.966534 | TCCTTTTTCTCTTTCTGCTTGATT | 57.033 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1471 | 2839 | 6.974965 | TCCTTTTTCTCTTTCTGCTTGATTC | 58.025 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1472 | 2840 | 6.547141 | TCCTTTTTCTCTTTCTGCTTGATTCA | 59.453 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
1473 | 2841 | 6.640092 | CCTTTTTCTCTTTCTGCTTGATTCAC | 59.360 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1474 | 2842 | 6.949352 | TTTTCTCTTTCTGCTTGATTCACT | 57.051 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1475 | 2843 | 6.551385 | TTTCTCTTTCTGCTTGATTCACTC | 57.449 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
1476 | 2844 | 5.219343 | TCTCTTTCTGCTTGATTCACTCA | 57.781 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1477 | 2845 | 4.993584 | TCTCTTTCTGCTTGATTCACTCAC | 59.006 | 41.667 | 0.00 | 0.00 | 32.17 | 3.51 |
1478 | 2846 | 4.965814 | TCTTTCTGCTTGATTCACTCACT | 58.034 | 39.130 | 0.00 | 0.00 | 32.17 | 3.41 |
1479 | 2847 | 5.371526 | TCTTTCTGCTTGATTCACTCACTT | 58.628 | 37.500 | 0.00 | 0.00 | 32.17 | 3.16 |
1480 | 2848 | 6.524734 | TCTTTCTGCTTGATTCACTCACTTA | 58.475 | 36.000 | 0.00 | 0.00 | 32.17 | 2.24 |
1481 | 2849 | 6.648310 | TCTTTCTGCTTGATTCACTCACTTAG | 59.352 | 38.462 | 0.00 | 0.00 | 32.17 | 2.18 |
1482 | 2850 | 5.728637 | TCTGCTTGATTCACTCACTTAGA | 57.271 | 39.130 | 0.00 | 0.00 | 32.17 | 2.10 |
1483 | 2851 | 6.291648 | TCTGCTTGATTCACTCACTTAGAT | 57.708 | 37.500 | 0.00 | 0.00 | 32.17 | 1.98 |
1484 | 2852 | 6.104665 | TCTGCTTGATTCACTCACTTAGATG | 58.895 | 40.000 | 0.00 | 0.00 | 32.17 | 2.90 |
1485 | 2853 | 5.798132 | TGCTTGATTCACTCACTTAGATGT | 58.202 | 37.500 | 0.00 | 0.00 | 32.17 | 3.06 |
1486 | 2854 | 5.640783 | TGCTTGATTCACTCACTTAGATGTG | 59.359 | 40.000 | 0.00 | 0.00 | 39.15 | 3.21 |
1487 | 2855 | 5.447010 | GCTTGATTCACTCACTTAGATGTGC | 60.447 | 44.000 | 0.00 | 0.00 | 37.81 | 4.57 |
1488 | 2856 | 5.151297 | TGATTCACTCACTTAGATGTGCA | 57.849 | 39.130 | 0.00 | 0.00 | 37.81 | 4.57 |
1489 | 2857 | 5.550290 | TGATTCACTCACTTAGATGTGCAA | 58.450 | 37.500 | 0.00 | 0.00 | 37.81 | 4.08 |
1490 | 2858 | 6.175471 | TGATTCACTCACTTAGATGTGCAAT | 58.825 | 36.000 | 0.00 | 0.00 | 37.81 | 3.56 |
1491 | 2859 | 7.330262 | TGATTCACTCACTTAGATGTGCAATA | 58.670 | 34.615 | 0.00 | 0.00 | 37.81 | 1.90 |
1492 | 2860 | 7.823799 | TGATTCACTCACTTAGATGTGCAATAA | 59.176 | 33.333 | 0.00 | 0.00 | 37.81 | 1.40 |
1493 | 2861 | 6.968131 | TCACTCACTTAGATGTGCAATAAC | 57.032 | 37.500 | 0.00 | 0.00 | 37.81 | 1.89 |
1494 | 2862 | 6.701340 | TCACTCACTTAGATGTGCAATAACT | 58.299 | 36.000 | 0.00 | 0.00 | 37.81 | 2.24 |
1495 | 2863 | 7.836842 | TCACTCACTTAGATGTGCAATAACTA | 58.163 | 34.615 | 0.00 | 0.00 | 37.81 | 2.24 |
1601 | 2973 | 6.045318 | TGAAGTTGCTATGCTCTTATCAGTC | 58.955 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1615 | 2987 | 5.661759 | TCTTATCAGTCCTTTAGGTTCCTCC | 59.338 | 44.000 | 0.00 | 0.00 | 36.34 | 4.30 |
1623 | 2995 | 4.227527 | TCCTTTAGGTTCCTCCATTCCTTC | 59.772 | 45.833 | 0.00 | 0.00 | 39.02 | 3.46 |
1640 | 3012 | 2.159627 | CCTTCGTGCACAGTAATTGGTC | 59.840 | 50.000 | 18.64 | 0.00 | 0.00 | 4.02 |
1654 | 3026 | 7.283127 | ACAGTAATTGGTCTGCCACTATTATTG | 59.717 | 37.037 | 9.81 | 9.81 | 46.01 | 1.90 |
1834 | 3212 | 1.996798 | ACTGGTCTCCGTTTCTCTCA | 58.003 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1854 | 3232 | 9.088987 | TCTCTCAATAAATATTTATTTGCCCCC | 57.911 | 33.333 | 24.51 | 0.00 | 40.37 | 5.40 |
2078 | 3457 | 4.871933 | TCTGCTCATCTTAGTTGTGACA | 57.128 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
2109 | 3488 | 7.276438 | AGTTTCTGAATTTTGTTGCTTTGTCTC | 59.724 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
2135 | 3514 | 7.553334 | TCTTTATTATAGCAAAGAGTCGTGGT | 58.447 | 34.615 | 6.76 | 6.76 | 36.19 | 4.16 |
2242 | 3621 | 1.002087 | CCTAAGCCAACTGAAGGTCGT | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
2322 | 3701 | 4.742438 | TTCTTCCCTCAAATTTTCGTCG | 57.258 | 40.909 | 0.00 | 0.00 | 0.00 | 5.12 |
2378 | 3757 | 2.113139 | CACCCCAACGTGCCTTCT | 59.887 | 61.111 | 0.00 | 0.00 | 0.00 | 2.85 |
2398 | 3777 | 5.420725 | TCTGTATGTTGCTGGTTACATCT | 57.579 | 39.130 | 0.00 | 0.00 | 36.46 | 2.90 |
2467 | 3849 | 0.531090 | ACGCTGCACAACTCCGTTTA | 60.531 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2557 | 3939 | 1.629013 | CTGTGCGAATCGAACTAGCA | 58.371 | 50.000 | 15.44 | 0.00 | 36.21 | 3.49 |
2676 | 4059 | 2.198827 | TTGTGAATGCCACCCTACAG | 57.801 | 50.000 | 0.00 | 0.00 | 45.09 | 2.74 |
2678 | 4061 | 0.322456 | GTGAATGCCACCCTACAGCA | 60.322 | 55.000 | 0.00 | 0.00 | 39.86 | 4.41 |
2700 | 4083 | 5.308825 | CAAAAAGAGGCTCTCCTAACTTGA | 58.691 | 41.667 | 19.03 | 0.00 | 44.46 | 3.02 |
3154 | 4539 | 3.780294 | TCATGTGTAAAGGATAGGGTGCT | 59.220 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
3392 | 4780 | 2.508526 | GTGTCCTGATCAAGTTTGCCT | 58.491 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
3808 | 5196 | 1.694150 | GTGCCTACAGATAGCCATGGA | 59.306 | 52.381 | 18.40 | 0.00 | 0.00 | 3.41 |
3969 | 5358 | 6.994421 | TCTGTAGGCCACTATATTCATTCA | 57.006 | 37.500 | 5.01 | 0.00 | 0.00 | 2.57 |
4088 | 5479 | 4.220163 | CCCTCGGGTAATACTCCTATGTTC | 59.780 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4127 | 5521 | 2.654749 | TCTTTCATCGTCGATGCTGT | 57.345 | 45.000 | 26.86 | 0.00 | 39.63 | 4.40 |
4286 | 5682 | 0.901124 | TGCCTTGCAACAAAAGGTGT | 59.099 | 45.000 | 0.00 | 0.00 | 45.14 | 4.16 |
4353 | 5749 | 5.831525 | CCCTACTTTTTCTAACTGGGTTTGT | 59.168 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4390 | 5787 | 5.029650 | TCATGCGACACTTGTACAAATTC | 57.970 | 39.130 | 10.03 | 5.37 | 0.00 | 2.17 |
4391 | 5788 | 4.513318 | TCATGCGACACTTGTACAAATTCA | 59.487 | 37.500 | 10.03 | 2.96 | 0.00 | 2.57 |
4394 | 5791 | 3.603770 | GCGACACTTGTACAAATTCATGC | 59.396 | 43.478 | 10.03 | 6.24 | 0.00 | 4.06 |
4507 | 5904 | 6.742718 | CCTGTTGAACGATATTTGCTTTACAG | 59.257 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
4566 | 5963 | 7.267128 | TCCTATCTTTTATTGCCTGCAAATTG | 58.733 | 34.615 | 8.84 | 0.00 | 39.55 | 2.32 |
4578 | 5976 | 3.132925 | CTGCAAATTGTTTGTTGGGGAG | 58.867 | 45.455 | 4.56 | 0.00 | 42.56 | 4.30 |
4788 | 6192 | 1.512926 | AAGTTGTAAGCGTCTGCAGG | 58.487 | 50.000 | 15.13 | 0.00 | 46.23 | 4.85 |
4790 | 6194 | 1.202651 | AGTTGTAAGCGTCTGCAGGTT | 60.203 | 47.619 | 15.13 | 3.84 | 46.23 | 3.50 |
4846 | 6250 | 5.105957 | CCTCGTGAGATATATGCAGTTAGCT | 60.106 | 44.000 | 0.00 | 0.00 | 41.85 | 3.32 |
4847 | 6251 | 6.332735 | TCGTGAGATATATGCAGTTAGCTT | 57.667 | 37.500 | 0.00 | 0.00 | 38.89 | 3.74 |
4881 | 6285 | 6.864421 | ACATAGGGACATCTCAGGATTACTA | 58.136 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
4882 | 6286 | 7.306013 | ACATAGGGACATCTCAGGATTACTAA | 58.694 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
5006 | 6410 | 5.755861 | AGTGCTTCTCTCTTTGACAACTTAC | 59.244 | 40.000 | 0.00 | 0.00 | 0.00 | 2.34 |
5059 | 6714 | 6.870965 | AGTCAATGCAACAGTTTTGTTTACAA | 59.129 | 30.769 | 0.00 | 0.00 | 45.01 | 2.41 |
5108 | 6765 | 7.885399 | AGGAAGAGTTGCATAGTGAATAAAAGT | 59.115 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
5218 | 6958 | 9.685276 | TGACTAATGTTATGAATCTGGAAACAT | 57.315 | 29.630 | 0.00 | 0.00 | 41.29 | 2.71 |
5558 | 7299 | 3.114668 | TGCTCGTTTACAGTTGGCTTA | 57.885 | 42.857 | 0.00 | 0.00 | 0.00 | 3.09 |
5666 | 7407 | 6.640518 | TGGCTTCGAATTCTGTCTAGTTAAT | 58.359 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
5822 | 7563 | 1.681793 | AGATTGGTAGACGGTGGATCG | 59.318 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
6593 | 8335 | 3.189080 | TCTTCATGTTCTCATTTGCACGG | 59.811 | 43.478 | 0.00 | 0.00 | 31.15 | 4.94 |
6624 | 8366 | 9.303537 | GTAGTTTTGCTGTTTATTTTGTTACCA | 57.696 | 29.630 | 0.00 | 0.00 | 0.00 | 3.25 |
6968 | 8711 | 5.344743 | TGAAAGTGCTCATAAGTCCTAGG | 57.655 | 43.478 | 0.82 | 0.82 | 0.00 | 3.02 |
7096 | 8844 | 1.541588 | GTTGGACTCCATTGGTCTTGC | 59.458 | 52.381 | 1.86 | 0.00 | 31.53 | 4.01 |
7111 | 8859 | 0.396139 | CTTGCCCCATGTGCTATGGT | 60.396 | 55.000 | 16.14 | 0.00 | 37.48 | 3.55 |
7266 | 9017 | 6.210385 | TGAGGGCTGATTATTTTGTTGCTTTA | 59.790 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
7299 | 9050 | 7.283127 | GGTAGAGTGAATTTGAGCATTCCATTA | 59.717 | 37.037 | 0.00 | 0.00 | 32.86 | 1.90 |
7339 | 9090 | 1.064758 | TGTGGCCTGTCATGGGATAAC | 60.065 | 52.381 | 3.32 | 0.00 | 0.00 | 1.89 |
7365 | 9116 | 4.626042 | CTTAGGGCATCTGTAGCTAGTTG | 58.374 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
7382 | 9133 | 2.093658 | AGTTGGTTAGGCATGTAGTCCG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
7385 | 9136 | 1.202498 | GGTTAGGCATGTAGTCCGTCC | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
7399 | 9150 | 3.818773 | AGTCCGTCCAAACAAATGTAAGG | 59.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
7761 | 9522 | 8.540507 | AATCTTGATGAAGCTCCTAGTAACTA | 57.459 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
7993 | 9754 | 7.068341 | GTCATCTGCTATCATTTTCGACATTC | 58.932 | 38.462 | 0.00 | 0.00 | 0.00 | 2.67 |
8032 | 9793 | 3.396560 | AGGAACGTTACCTACTTTGTGC | 58.603 | 45.455 | 6.97 | 0.00 | 35.84 | 4.57 |
8091 | 9853 | 4.521256 | TGCACATTTTTAACCCTGGACTAC | 59.479 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
8092 | 9854 | 4.379082 | GCACATTTTTAACCCTGGACTACG | 60.379 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
8096 | 9892 | 7.120138 | CACATTTTTAACCCTGGACTACGTTAT | 59.880 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
8175 | 9972 | 2.622064 | AGTTTCGTTCCAAGCTGTCT | 57.378 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
8256 | 10057 | 7.649306 | AGAACAGTCTTCATGCACAAAATTAAC | 59.351 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
8285 | 10086 | 7.276438 | CAGCTGGTCAAAATAAGCCTAAAAATC | 59.724 | 37.037 | 5.57 | 0.00 | 36.28 | 2.17 |
8286 | 10087 | 7.039082 | AGCTGGTCAAAATAAGCCTAAAAATCA | 60.039 | 33.333 | 0.00 | 0.00 | 36.28 | 2.57 |
8338 | 10157 | 9.643693 | AAATGAGCTTGGATAAACAGTAAATTG | 57.356 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
8394 | 10218 | 9.897744 | GAACTTTGATAAAGATCACATTTGTCA | 57.102 | 29.630 | 8.18 | 0.00 | 41.92 | 3.58 |
8395 | 10219 | 9.903682 | AACTTTGATAAAGATCACATTTGTCAG | 57.096 | 29.630 | 8.18 | 0.00 | 41.92 | 3.51 |
8396 | 10220 | 8.517878 | ACTTTGATAAAGATCACATTTGTCAGG | 58.482 | 33.333 | 8.18 | 2.03 | 41.92 | 3.86 |
8397 | 10221 | 6.441093 | TGATAAAGATCACATTTGTCAGGC | 57.559 | 37.500 | 0.00 | 0.00 | 37.15 | 4.85 |
8401 | 10225 | 1.131126 | GATCACATTTGTCAGGCGTGG | 59.869 | 52.381 | 6.56 | 0.00 | 0.00 | 4.94 |
8402 | 10226 | 1.081242 | CACATTTGTCAGGCGTGGC | 60.081 | 57.895 | 3.56 | 3.56 | 0.00 | 5.01 |
8403 | 10227 | 1.528076 | ACATTTGTCAGGCGTGGCA | 60.528 | 52.632 | 10.09 | 10.09 | 36.14 | 4.92 |
8438 | 10263 | 6.890558 | AGACAAAATATGTGTTGCAAAATGC | 58.109 | 32.000 | 0.00 | 0.00 | 44.12 | 3.56 |
8439 | 10264 | 6.707161 | AGACAAAATATGTGTTGCAAAATGCT | 59.293 | 30.769 | 0.00 | 0.00 | 43.13 | 3.79 |
8441 | 10266 | 7.705214 | ACAAAATATGTGTTGCAAAATGCTTT | 58.295 | 26.923 | 0.00 | 0.00 | 42.13 | 3.51 |
8442 | 10267 | 8.189460 | ACAAAATATGTGTTGCAAAATGCTTTT | 58.811 | 25.926 | 0.00 | 1.14 | 42.13 | 2.27 |
8478 | 10306 | 7.899974 | TCAATTTTGTTTTATTGGTCACAACG | 58.100 | 30.769 | 0.00 | 0.00 | 39.87 | 4.10 |
8530 | 10358 | 4.858935 | TGCAAGCACTTAGAACATTTGTC | 58.141 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
8535 | 10363 | 5.057149 | AGCACTTAGAACATTTGTCGAAGT | 58.943 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
8536 | 10364 | 5.527582 | AGCACTTAGAACATTTGTCGAAGTT | 59.472 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
8537 | 10365 | 5.846473 | GCACTTAGAACATTTGTCGAAGTTC | 59.154 | 40.000 | 0.00 | 0.00 | 40.37 | 3.01 |
8538 | 10366 | 6.511121 | GCACTTAGAACATTTGTCGAAGTTCA | 60.511 | 38.462 | 3.32 | 0.00 | 42.01 | 3.18 |
8545 | 10373 | 5.715070 | ACATTTGTCGAAGTTCACCAAAAA | 58.285 | 33.333 | 16.42 | 3.63 | 0.00 | 1.94 |
8558 | 10386 | 9.500785 | AAGTTCACCAAAAAGAAAAATTCAGAA | 57.499 | 25.926 | 0.00 | 0.00 | 0.00 | 3.02 |
8607 | 10435 | 6.647334 | TGGTTTTATTGTTCATCAAGCTCA | 57.353 | 33.333 | 0.00 | 0.00 | 39.55 | 4.26 |
8608 | 10436 | 7.230849 | TGGTTTTATTGTTCATCAAGCTCAT | 57.769 | 32.000 | 0.00 | 0.00 | 39.55 | 2.90 |
8609 | 10437 | 7.669427 | TGGTTTTATTGTTCATCAAGCTCATT | 58.331 | 30.769 | 0.00 | 0.00 | 39.55 | 2.57 |
8610 | 10438 | 8.149647 | TGGTTTTATTGTTCATCAAGCTCATTT | 58.850 | 29.630 | 0.00 | 0.00 | 39.55 | 2.32 |
8611 | 10439 | 8.437742 | GGTTTTATTGTTCATCAAGCTCATTTG | 58.562 | 33.333 | 0.00 | 0.00 | 39.55 | 2.32 |
8612 | 10440 | 9.195411 | GTTTTATTGTTCATCAAGCTCATTTGA | 57.805 | 29.630 | 0.00 | 0.00 | 41.00 | 2.69 |
8613 | 10441 | 8.975410 | TTTATTGTTCATCAAGCTCATTTGAG | 57.025 | 30.769 | 3.13 | 3.13 | 40.16 | 3.02 |
8637 | 10465 | 0.818296 | AGCTCAGATACTCGGCGTTT | 59.182 | 50.000 | 6.85 | 0.00 | 0.00 | 3.60 |
8640 | 10468 | 2.722071 | CTCAGATACTCGGCGTTTCTC | 58.278 | 52.381 | 6.85 | 0.33 | 32.52 | 2.87 |
8661 | 10489 | 5.353400 | TCTCTAAATCTTGCATGCAGTGAAG | 59.647 | 40.000 | 21.50 | 15.37 | 0.00 | 3.02 |
8695 | 10523 | 4.398988 | GGTGCCACATAATCAGAATTGTCA | 59.601 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
8696 | 10524 | 5.449588 | GGTGCCACATAATCAGAATTGTCAG | 60.450 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
8697 | 10525 | 5.124457 | GTGCCACATAATCAGAATTGTCAGT | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
8698 | 10526 | 5.711506 | TGCCACATAATCAGAATTGTCAGTT | 59.288 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
8699 | 10527 | 6.032094 | GCCACATAATCAGAATTGTCAGTTG | 58.968 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
8700 | 10528 | 6.127925 | GCCACATAATCAGAATTGTCAGTTGA | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
8707 | 10535 | 8.991783 | AATCAGAATTGTCAGTTGATATGGAT | 57.008 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
8712 | 10540 | 9.499479 | AGAATTGTCAGTTGATATGGATGATAC | 57.501 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
8756 | 10584 | 4.819105 | TGGTACACTTGATAGGAGTTGG | 57.181 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
8757 | 10585 | 4.164981 | TGGTACACTTGATAGGAGTTGGT | 58.835 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
8758 | 10586 | 4.595781 | TGGTACACTTGATAGGAGTTGGTT | 59.404 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
8759 | 10587 | 4.935808 | GGTACACTTGATAGGAGTTGGTTG | 59.064 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
8760 | 10588 | 4.974645 | ACACTTGATAGGAGTTGGTTGA | 57.025 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
8761 | 10589 | 4.899502 | ACACTTGATAGGAGTTGGTTGAG | 58.100 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
8762 | 10590 | 4.256920 | CACTTGATAGGAGTTGGTTGAGG | 58.743 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
8763 | 10591 | 3.264450 | ACTTGATAGGAGTTGGTTGAGGG | 59.736 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
8764 | 10592 | 2.196595 | TGATAGGAGTTGGTTGAGGGG | 58.803 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
8765 | 10593 | 0.919710 | ATAGGAGTTGGTTGAGGGGC | 59.080 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
8766 | 10594 | 0.474854 | TAGGAGTTGGTTGAGGGGCA | 60.475 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
8767 | 10595 | 1.152830 | GGAGTTGGTTGAGGGGCAA | 59.847 | 57.895 | 0.00 | 0.00 | 0.00 | 4.52 |
8779 | 10607 | 0.112995 | AGGGGCAACTTCATGCTTGA | 59.887 | 50.000 | 0.00 | 0.00 | 45.68 | 3.02 |
8789 | 10617 | 4.521146 | ACTTCATGCTTGATAGGAGTTGG | 58.479 | 43.478 | 2.75 | 0.00 | 0.00 | 3.77 |
8795 | 10623 | 3.274288 | GCTTGATAGGAGTTGGTTGAGG | 58.726 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
8807 | 10635 | 0.681243 | GGTTGAGGGGCCACTTCATC | 60.681 | 60.000 | 10.15 | 7.92 | 0.00 | 2.92 |
8808 | 10636 | 0.038166 | GTTGAGGGGCCACTTCATCA | 59.962 | 55.000 | 10.15 | 0.00 | 0.00 | 3.07 |
8809 | 10637 | 0.776810 | TTGAGGGGCCACTTCATCAA | 59.223 | 50.000 | 10.15 | 6.04 | 0.00 | 2.57 |
8810 | 10638 | 0.776810 | TGAGGGGCCACTTCATCAAA | 59.223 | 50.000 | 10.15 | 0.00 | 0.00 | 2.69 |
8811 | 10639 | 1.146774 | TGAGGGGCCACTTCATCAAAA | 59.853 | 47.619 | 10.15 | 0.00 | 0.00 | 2.44 |
8812 | 10640 | 2.225343 | TGAGGGGCCACTTCATCAAAAT | 60.225 | 45.455 | 10.15 | 0.00 | 0.00 | 1.82 |
8813 | 10641 | 2.833943 | GAGGGGCCACTTCATCAAAATT | 59.166 | 45.455 | 10.15 | 0.00 | 0.00 | 1.82 |
8814 | 10642 | 2.568509 | AGGGGCCACTTCATCAAAATTG | 59.431 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
8815 | 10643 | 2.302733 | GGGGCCACTTCATCAAAATTGT | 59.697 | 45.455 | 4.39 | 0.00 | 0.00 | 2.71 |
8816 | 10644 | 3.588955 | GGGCCACTTCATCAAAATTGTC | 58.411 | 45.455 | 4.39 | 0.00 | 0.00 | 3.18 |
8817 | 10645 | 3.259123 | GGGCCACTTCATCAAAATTGTCT | 59.741 | 43.478 | 4.39 | 0.00 | 0.00 | 3.41 |
8818 | 10646 | 4.462483 | GGGCCACTTCATCAAAATTGTCTA | 59.538 | 41.667 | 4.39 | 0.00 | 0.00 | 2.59 |
8819 | 10647 | 5.393461 | GGGCCACTTCATCAAAATTGTCTAG | 60.393 | 44.000 | 4.39 | 0.00 | 0.00 | 2.43 |
8820 | 10648 | 5.183904 | GGCCACTTCATCAAAATTGTCTAGT | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
8821 | 10649 | 6.294731 | GGCCACTTCATCAAAATTGTCTAGTT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
8822 | 10650 | 6.583806 | GCCACTTCATCAAAATTGTCTAGTTG | 59.416 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
8823 | 10651 | 7.522073 | GCCACTTCATCAAAATTGTCTAGTTGA | 60.522 | 37.037 | 0.00 | 0.00 | 34.68 | 3.18 |
8824 | 10652 | 7.805071 | CCACTTCATCAAAATTGTCTAGTTGAC | 59.195 | 37.037 | 0.00 | 0.00 | 45.54 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
6 | 7 | 1.756561 | TCGTCGCCATCATCCTGGA | 60.757 | 57.895 | 0.00 | 0.00 | 38.69 | 3.86 |
7 | 8 | 1.592669 | GTCGTCGCCATCATCCTGG | 60.593 | 63.158 | 0.00 | 0.00 | 39.45 | 4.45 |
8 | 9 | 0.249615 | ATGTCGTCGCCATCATCCTG | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
231 | 247 | 4.415150 | CCGCACCACCATGCCTCT | 62.415 | 66.667 | 0.00 | 0.00 | 42.99 | 3.69 |
274 | 293 | 0.952497 | ATCTGTCGTTGCAGCACCTG | 60.952 | 55.000 | 0.00 | 0.00 | 36.49 | 4.00 |
318 | 337 | 4.062293 | CCTCCACTCGTATCAAAACAACA | 58.938 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
321 | 340 | 2.695359 | GCCTCCACTCGTATCAAAACA | 58.305 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
328 | 347 | 0.669077 | GATGTCGCCTCCACTCGTAT | 59.331 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
357 | 376 | 3.822192 | CATCCACGTCCTCGCCGA | 61.822 | 66.667 | 0.00 | 0.00 | 41.18 | 5.54 |
369 | 388 | 3.780173 | TGGTCGCCATCGCATCCA | 61.780 | 61.111 | 0.00 | 0.00 | 35.26 | 3.41 |
395 | 414 | 1.307517 | TTCCATAGGACGCCCCCTT | 60.308 | 57.895 | 0.00 | 0.00 | 37.74 | 3.95 |
447 | 468 | 1.587613 | TTTTTCACGTTGCGCTGCC | 60.588 | 52.632 | 9.73 | 0.00 | 0.00 | 4.85 |
449 | 470 | 1.528248 | CGGTTTTTCACGTTGCGCTG | 61.528 | 55.000 | 9.73 | 0.00 | 0.00 | 5.18 |
450 | 471 | 1.298041 | CGGTTTTTCACGTTGCGCT | 60.298 | 52.632 | 9.73 | 0.00 | 0.00 | 5.92 |
451 | 472 | 2.290082 | CCGGTTTTTCACGTTGCGC | 61.290 | 57.895 | 0.00 | 0.00 | 0.00 | 6.09 |
452 | 473 | 2.290082 | GCCGGTTTTTCACGTTGCG | 61.290 | 57.895 | 1.90 | 0.00 | 0.00 | 4.85 |
455 | 491 | 1.644913 | CTCGCCGGTTTTTCACGTT | 59.355 | 52.632 | 1.90 | 0.00 | 0.00 | 3.99 |
461 | 497 | 3.670377 | GCCAGCTCGCCGGTTTTT | 61.670 | 61.111 | 1.90 | 0.00 | 0.00 | 1.94 |
482 | 518 | 1.910671 | AGCCCCGTGTTCCTAAATACA | 59.089 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
533 | 573 | 1.822990 | CCCGAACTGCTCCACTACTAA | 59.177 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
534 | 574 | 1.005097 | TCCCGAACTGCTCCACTACTA | 59.995 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 |
542 | 582 | 1.446272 | CCTTCGTCCCGAACTGCTC | 60.446 | 63.158 | 0.00 | 0.00 | 41.05 | 4.26 |
550 | 590 | 1.794222 | GCACAATTCCTTCGTCCCG | 59.206 | 57.895 | 0.00 | 0.00 | 0.00 | 5.14 |
555 | 598 | 1.135315 | CAGCCGCACAATTCCTTCG | 59.865 | 57.895 | 0.00 | 0.00 | 0.00 | 3.79 |
600 | 643 | 3.411418 | CTGACACGCGCCGGTCTAT | 62.411 | 63.158 | 21.97 | 0.00 | 35.11 | 1.98 |
611 | 654 | 2.337749 | CTACCTAGGCGGCTGACACG | 62.338 | 65.000 | 23.55 | 6.41 | 35.61 | 4.49 |
612 | 655 | 1.035932 | TCTACCTAGGCGGCTGACAC | 61.036 | 60.000 | 23.55 | 0.00 | 35.61 | 3.67 |
613 | 656 | 0.106167 | ATCTACCTAGGCGGCTGACA | 60.106 | 55.000 | 23.55 | 0.00 | 35.61 | 3.58 |
614 | 657 | 1.813786 | CTATCTACCTAGGCGGCTGAC | 59.186 | 57.143 | 23.55 | 0.00 | 35.61 | 3.51 |
615 | 658 | 1.703513 | TCTATCTACCTAGGCGGCTGA | 59.296 | 52.381 | 23.55 | 10.30 | 35.61 | 4.26 |
616 | 659 | 2.201921 | TCTATCTACCTAGGCGGCTG | 57.798 | 55.000 | 23.55 | 8.43 | 35.61 | 4.85 |
617 | 660 | 3.524380 | ACTATCTATCTACCTAGGCGGCT | 59.476 | 47.826 | 18.33 | 18.33 | 35.61 | 5.52 |
618 | 661 | 3.888583 | ACTATCTATCTACCTAGGCGGC | 58.111 | 50.000 | 9.30 | 0.00 | 35.61 | 6.53 |
619 | 662 | 6.482898 | TCTACTATCTATCTACCTAGGCGG | 57.517 | 45.833 | 9.30 | 1.50 | 39.35 | 6.13 |
620 | 663 | 7.728148 | TCATCTACTATCTATCTACCTAGGCG | 58.272 | 42.308 | 9.30 | 0.00 | 0.00 | 5.52 |
621 | 664 | 9.502091 | CATCATCTACTATCTATCTACCTAGGC | 57.498 | 40.741 | 9.30 | 0.00 | 0.00 | 3.93 |
669 | 723 | 3.285484 | CCGGTAGCAGAGTAAACTCCTA | 58.715 | 50.000 | 6.50 | 0.09 | 43.88 | 2.94 |
823 | 1872 | 1.205460 | ATAAACGGGGCAGGGTGAGT | 61.205 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
852 | 1901 | 2.978824 | GCAAGAGGTGCGTAGGGA | 59.021 | 61.111 | 0.00 | 0.00 | 45.10 | 4.20 |
943 | 1995 | 3.839432 | CGGGGCTTCGAGGAGGTC | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 3.85 |
947 | 1999 | 1.828660 | GAGATCGGGGCTTCGAGGA | 60.829 | 63.158 | 0.00 | 0.00 | 42.69 | 3.71 |
972 | 2028 | 1.379176 | TCTGGCACGGAGAGGAGAG | 60.379 | 63.158 | 0.00 | 0.00 | 39.80 | 3.20 |
1010 | 2378 | 2.247437 | GGCGGCGATTGAGTCCATC | 61.247 | 63.158 | 12.98 | 0.00 | 0.00 | 3.51 |
1175 | 2543 | 1.944234 | TTGCAGTATCCGAGAGCGCA | 61.944 | 55.000 | 11.47 | 0.00 | 35.83 | 6.09 |
1188 | 2556 | 3.005554 | CACTTCCAGAATCGATTGCAGT | 58.994 | 45.455 | 16.96 | 4.42 | 0.00 | 4.40 |
1190 | 2558 | 1.739466 | GCACTTCCAGAATCGATTGCA | 59.261 | 47.619 | 16.96 | 0.00 | 0.00 | 4.08 |
1376 | 2744 | 8.438676 | ACTTAGATGTGCAATACTTATGGAAC | 57.561 | 34.615 | 0.00 | 0.00 | 0.00 | 3.62 |
1377 | 2745 | 7.715249 | GGACTTAGATGTGCAATACTTATGGAA | 59.285 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
1378 | 2746 | 7.071196 | AGGACTTAGATGTGCAATACTTATGGA | 59.929 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
1379 | 2747 | 7.220030 | AGGACTTAGATGTGCAATACTTATGG | 58.780 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
1380 | 2748 | 9.935241 | ATAGGACTTAGATGTGCAATACTTATG | 57.065 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
1381 | 2749 | 9.935241 | CATAGGACTTAGATGTGCAATACTTAT | 57.065 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1382 | 2750 | 8.924303 | ACATAGGACTTAGATGTGCAATACTTA | 58.076 | 33.333 | 0.00 | 0.00 | 32.62 | 2.24 |
1383 | 2751 | 7.712639 | CACATAGGACTTAGATGTGCAATACTT | 59.287 | 37.037 | 1.64 | 0.00 | 42.75 | 2.24 |
1384 | 2752 | 7.069950 | TCACATAGGACTTAGATGTGCAATACT | 59.930 | 37.037 | 8.93 | 0.00 | 46.53 | 2.12 |
1385 | 2753 | 7.210174 | TCACATAGGACTTAGATGTGCAATAC | 58.790 | 38.462 | 8.93 | 0.00 | 46.53 | 1.89 |
1386 | 2754 | 7.360113 | TCACATAGGACTTAGATGTGCAATA | 57.640 | 36.000 | 8.93 | 0.00 | 46.53 | 1.90 |
1387 | 2755 | 6.239217 | TCACATAGGACTTAGATGTGCAAT | 57.761 | 37.500 | 8.93 | 0.00 | 46.53 | 3.56 |
1388 | 2756 | 5.675684 | TCACATAGGACTTAGATGTGCAA | 57.324 | 39.130 | 8.93 | 0.00 | 46.53 | 4.08 |
1389 | 2757 | 5.876651 | ATCACATAGGACTTAGATGTGCA | 57.123 | 39.130 | 8.93 | 0.00 | 46.53 | 4.57 |
1390 | 2758 | 6.283694 | TCAATCACATAGGACTTAGATGTGC | 58.716 | 40.000 | 8.93 | 0.00 | 46.53 | 4.57 |
1392 | 2760 | 8.489676 | AGATCAATCACATAGGACTTAGATGT | 57.510 | 34.615 | 0.00 | 0.00 | 34.11 | 3.06 |
1395 | 2763 | 8.568794 | CGTAAGATCAATCACATAGGACTTAGA | 58.431 | 37.037 | 0.00 | 0.00 | 43.02 | 2.10 |
1396 | 2764 | 8.353684 | ACGTAAGATCAATCACATAGGACTTAG | 58.646 | 37.037 | 0.00 | 0.00 | 43.62 | 2.18 |
1397 | 2765 | 8.234136 | ACGTAAGATCAATCACATAGGACTTA | 57.766 | 34.615 | 0.00 | 0.00 | 43.62 | 2.24 |
1398 | 2766 | 7.113658 | ACGTAAGATCAATCACATAGGACTT | 57.886 | 36.000 | 0.00 | 0.00 | 43.62 | 3.01 |
1399 | 2767 | 6.716934 | ACGTAAGATCAATCACATAGGACT | 57.283 | 37.500 | 0.00 | 0.00 | 43.62 | 3.85 |
1400 | 2768 | 6.978659 | TCAACGTAAGATCAATCACATAGGAC | 59.021 | 38.462 | 0.00 | 0.00 | 43.62 | 3.85 |
1401 | 2769 | 7.068226 | TCTCAACGTAAGATCAATCACATAGGA | 59.932 | 37.037 | 0.00 | 0.00 | 43.62 | 2.94 |
1402 | 2770 | 7.203218 | TCTCAACGTAAGATCAATCACATAGG | 58.797 | 38.462 | 0.00 | 0.00 | 43.62 | 2.57 |
1403 | 2771 | 8.809159 | ATCTCAACGTAAGATCAATCACATAG | 57.191 | 34.615 | 7.39 | 0.00 | 43.62 | 2.23 |
1404 | 2772 | 9.249457 | GAATCTCAACGTAAGATCAATCACATA | 57.751 | 33.333 | 12.34 | 0.00 | 43.62 | 2.29 |
1405 | 2773 | 7.043125 | CGAATCTCAACGTAAGATCAATCACAT | 60.043 | 37.037 | 12.34 | 0.00 | 43.62 | 3.21 |
1406 | 2774 | 6.253512 | CGAATCTCAACGTAAGATCAATCACA | 59.746 | 38.462 | 12.34 | 0.00 | 43.62 | 3.58 |
1407 | 2775 | 6.253727 | ACGAATCTCAACGTAAGATCAATCAC | 59.746 | 38.462 | 12.34 | 2.89 | 40.92 | 3.06 |
1408 | 2776 | 6.253512 | CACGAATCTCAACGTAAGATCAATCA | 59.746 | 38.462 | 12.34 | 0.00 | 40.76 | 2.57 |
1409 | 2777 | 6.253727 | ACACGAATCTCAACGTAAGATCAATC | 59.746 | 38.462 | 12.34 | 7.18 | 40.76 | 2.67 |
1410 | 2778 | 6.035005 | CACACGAATCTCAACGTAAGATCAAT | 59.965 | 38.462 | 12.34 | 0.02 | 40.76 | 2.57 |
1411 | 2779 | 5.344933 | CACACGAATCTCAACGTAAGATCAA | 59.655 | 40.000 | 12.34 | 0.00 | 40.76 | 2.57 |
1412 | 2780 | 4.857037 | CACACGAATCTCAACGTAAGATCA | 59.143 | 41.667 | 12.34 | 0.00 | 40.76 | 2.92 |
1413 | 2781 | 4.265556 | CCACACGAATCTCAACGTAAGATC | 59.734 | 45.833 | 12.34 | 6.90 | 40.76 | 2.75 |
1414 | 2782 | 4.082408 | TCCACACGAATCTCAACGTAAGAT | 60.082 | 41.667 | 7.39 | 7.39 | 40.76 | 2.40 |
1415 | 2783 | 3.253921 | TCCACACGAATCTCAACGTAAGA | 59.746 | 43.478 | 3.32 | 3.32 | 40.76 | 2.10 |
1416 | 2784 | 3.571571 | TCCACACGAATCTCAACGTAAG | 58.428 | 45.455 | 0.00 | 0.00 | 40.76 | 2.34 |
1417 | 2785 | 3.646611 | TCCACACGAATCTCAACGTAA | 57.353 | 42.857 | 0.00 | 0.00 | 40.76 | 3.18 |
1418 | 2786 | 3.861276 | ATCCACACGAATCTCAACGTA | 57.139 | 42.857 | 0.00 | 0.00 | 40.76 | 3.57 |
1419 | 2787 | 2.743636 | ATCCACACGAATCTCAACGT | 57.256 | 45.000 | 0.00 | 0.00 | 43.50 | 3.99 |
1420 | 2788 | 5.718649 | AAATATCCACACGAATCTCAACG | 57.281 | 39.130 | 0.00 | 0.00 | 0.00 | 4.10 |
1443 | 2811 | 7.610865 | TCAAGCAGAAAGAGAAAAAGGAAAAA | 58.389 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
1444 | 2812 | 7.169158 | TCAAGCAGAAAGAGAAAAAGGAAAA | 57.831 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1445 | 2813 | 6.773976 | TCAAGCAGAAAGAGAAAAAGGAAA | 57.226 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
1446 | 2814 | 6.966534 | ATCAAGCAGAAAGAGAAAAAGGAA | 57.033 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
1447 | 2815 | 6.547141 | TGAATCAAGCAGAAAGAGAAAAAGGA | 59.453 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
1448 | 2816 | 6.640092 | GTGAATCAAGCAGAAAGAGAAAAAGG | 59.360 | 38.462 | 0.00 | 0.00 | 0.00 | 3.11 |
1449 | 2817 | 7.424001 | AGTGAATCAAGCAGAAAGAGAAAAAG | 58.576 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
1450 | 2818 | 7.067372 | TGAGTGAATCAAGCAGAAAGAGAAAAA | 59.933 | 33.333 | 0.00 | 0.00 | 34.02 | 1.94 |
1451 | 2819 | 6.543465 | TGAGTGAATCAAGCAGAAAGAGAAAA | 59.457 | 34.615 | 0.00 | 0.00 | 34.02 | 2.29 |
1452 | 2820 | 6.017605 | GTGAGTGAATCAAGCAGAAAGAGAAA | 60.018 | 38.462 | 0.00 | 0.00 | 40.43 | 2.52 |
1453 | 2821 | 5.468072 | GTGAGTGAATCAAGCAGAAAGAGAA | 59.532 | 40.000 | 0.00 | 0.00 | 40.43 | 2.87 |
1454 | 2822 | 4.993584 | GTGAGTGAATCAAGCAGAAAGAGA | 59.006 | 41.667 | 0.00 | 0.00 | 40.43 | 3.10 |
1455 | 2823 | 4.996122 | AGTGAGTGAATCAAGCAGAAAGAG | 59.004 | 41.667 | 0.00 | 0.00 | 40.43 | 2.85 |
1456 | 2824 | 4.965814 | AGTGAGTGAATCAAGCAGAAAGA | 58.034 | 39.130 | 0.00 | 0.00 | 40.43 | 2.52 |
1457 | 2825 | 5.686159 | AAGTGAGTGAATCAAGCAGAAAG | 57.314 | 39.130 | 0.00 | 0.00 | 40.43 | 2.62 |
1458 | 2826 | 6.524734 | TCTAAGTGAGTGAATCAAGCAGAAA | 58.475 | 36.000 | 0.00 | 0.00 | 40.43 | 2.52 |
1459 | 2827 | 6.101650 | TCTAAGTGAGTGAATCAAGCAGAA | 57.898 | 37.500 | 0.00 | 0.00 | 40.43 | 3.02 |
1460 | 2828 | 5.728637 | TCTAAGTGAGTGAATCAAGCAGA | 57.271 | 39.130 | 0.00 | 0.00 | 40.43 | 4.26 |
1461 | 2829 | 5.873712 | ACATCTAAGTGAGTGAATCAAGCAG | 59.126 | 40.000 | 0.00 | 0.00 | 40.43 | 4.24 |
1462 | 2830 | 5.640783 | CACATCTAAGTGAGTGAATCAAGCA | 59.359 | 40.000 | 0.00 | 0.00 | 42.05 | 3.91 |
1463 | 2831 | 5.447010 | GCACATCTAAGTGAGTGAATCAAGC | 60.447 | 44.000 | 0.00 | 0.00 | 42.05 | 4.01 |
1464 | 2832 | 5.640783 | TGCACATCTAAGTGAGTGAATCAAG | 59.359 | 40.000 | 0.00 | 0.00 | 42.05 | 3.02 |
1465 | 2833 | 5.550290 | TGCACATCTAAGTGAGTGAATCAA | 58.450 | 37.500 | 0.00 | 0.00 | 42.05 | 2.57 |
1466 | 2834 | 5.151297 | TGCACATCTAAGTGAGTGAATCA | 57.849 | 39.130 | 0.00 | 0.00 | 42.05 | 2.57 |
1467 | 2835 | 6.674694 | ATTGCACATCTAAGTGAGTGAATC | 57.325 | 37.500 | 0.00 | 0.00 | 42.05 | 2.52 |
1468 | 2836 | 7.826252 | AGTTATTGCACATCTAAGTGAGTGAAT | 59.174 | 33.333 | 0.00 | 0.00 | 42.05 | 2.57 |
1469 | 2837 | 7.161404 | AGTTATTGCACATCTAAGTGAGTGAA | 58.839 | 34.615 | 0.00 | 0.00 | 42.05 | 3.18 |
1470 | 2838 | 6.701340 | AGTTATTGCACATCTAAGTGAGTGA | 58.299 | 36.000 | 0.00 | 0.00 | 42.05 | 3.41 |
1471 | 2839 | 6.974932 | AGTTATTGCACATCTAAGTGAGTG | 57.025 | 37.500 | 0.00 | 0.00 | 42.05 | 3.51 |
1472 | 2840 | 8.067751 | TCTAGTTATTGCACATCTAAGTGAGT | 57.932 | 34.615 | 0.00 | 0.00 | 42.05 | 3.41 |
1473 | 2841 | 8.194104 | ACTCTAGTTATTGCACATCTAAGTGAG | 58.806 | 37.037 | 0.00 | 0.00 | 42.05 | 3.51 |
1474 | 2842 | 8.067751 | ACTCTAGTTATTGCACATCTAAGTGA | 57.932 | 34.615 | 0.00 | 0.00 | 42.05 | 3.41 |
1475 | 2843 | 8.709386 | AACTCTAGTTATTGCACATCTAAGTG | 57.291 | 34.615 | 0.00 | 0.00 | 38.29 | 3.16 |
1476 | 2844 | 9.726438 | AAAACTCTAGTTATTGCACATCTAAGT | 57.274 | 29.630 | 0.00 | 0.00 | 37.25 | 2.24 |
1478 | 2846 | 9.944376 | AGAAAACTCTAGTTATTGCACATCTAA | 57.056 | 29.630 | 0.00 | 0.00 | 37.25 | 2.10 |
1479 | 2847 | 9.944376 | AAGAAAACTCTAGTTATTGCACATCTA | 57.056 | 29.630 | 0.00 | 0.00 | 37.25 | 1.98 |
1480 | 2848 | 8.854614 | AAGAAAACTCTAGTTATTGCACATCT | 57.145 | 30.769 | 0.00 | 0.00 | 37.25 | 2.90 |
1481 | 2849 | 9.548208 | GAAAGAAAACTCTAGTTATTGCACATC | 57.452 | 33.333 | 0.00 | 0.00 | 37.25 | 3.06 |
1482 | 2850 | 8.515414 | GGAAAGAAAACTCTAGTTATTGCACAT | 58.485 | 33.333 | 0.00 | 0.00 | 37.25 | 3.21 |
1483 | 2851 | 7.307751 | CGGAAAGAAAACTCTAGTTATTGCACA | 60.308 | 37.037 | 0.00 | 0.00 | 37.25 | 4.57 |
1484 | 2852 | 7.015877 | CGGAAAGAAAACTCTAGTTATTGCAC | 58.984 | 38.462 | 0.00 | 0.00 | 37.25 | 4.57 |
1485 | 2853 | 6.932400 | TCGGAAAGAAAACTCTAGTTATTGCA | 59.068 | 34.615 | 0.00 | 0.00 | 37.25 | 4.08 |
1486 | 2854 | 7.235080 | GTCGGAAAGAAAACTCTAGTTATTGC | 58.765 | 38.462 | 0.00 | 0.00 | 37.25 | 3.56 |
1487 | 2855 | 7.115947 | ACGTCGGAAAGAAAACTCTAGTTATTG | 59.884 | 37.037 | 0.00 | 0.00 | 37.25 | 1.90 |
1488 | 2856 | 7.150640 | ACGTCGGAAAGAAAACTCTAGTTATT | 58.849 | 34.615 | 0.00 | 0.00 | 37.25 | 1.40 |
1489 | 2857 | 6.685657 | ACGTCGGAAAGAAAACTCTAGTTAT | 58.314 | 36.000 | 0.00 | 0.00 | 37.25 | 1.89 |
1490 | 2858 | 6.076981 | ACGTCGGAAAGAAAACTCTAGTTA | 57.923 | 37.500 | 0.00 | 0.00 | 37.25 | 2.24 |
1491 | 2859 | 4.941657 | ACGTCGGAAAGAAAACTCTAGTT | 58.058 | 39.130 | 0.00 | 0.00 | 40.50 | 2.24 |
1492 | 2860 | 4.581077 | ACGTCGGAAAGAAAACTCTAGT | 57.419 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
1493 | 2861 | 5.902051 | AAACGTCGGAAAGAAAACTCTAG | 57.098 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
1494 | 2862 | 5.922544 | CCTAAACGTCGGAAAGAAAACTCTA | 59.077 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1495 | 2863 | 4.748600 | CCTAAACGTCGGAAAGAAAACTCT | 59.251 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
1601 | 2973 | 4.527944 | GAAGGAATGGAGGAACCTAAAGG | 58.472 | 47.826 | 0.00 | 0.00 | 39.86 | 3.11 |
1615 | 2987 | 4.406069 | CAATTACTGTGCACGAAGGAATG | 58.594 | 43.478 | 13.80 | 6.38 | 27.14 | 2.67 |
1623 | 2995 | 1.135972 | GCAGACCAATTACTGTGCACG | 60.136 | 52.381 | 13.13 | 9.67 | 36.62 | 5.34 |
1640 | 3012 | 6.519382 | TCATCTCAGACAATAATAGTGGCAG | 58.481 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2078 | 3457 | 8.496707 | AAGCAACAAAATTCAGAAACTCATTT | 57.503 | 26.923 | 0.00 | 0.00 | 0.00 | 2.32 |
2131 | 3510 | 3.447742 | CAAGAAGCTTTCACCAAACCAC | 58.552 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
2135 | 3514 | 2.387757 | AGGCAAGAAGCTTTCACCAAA | 58.612 | 42.857 | 0.00 | 0.00 | 44.79 | 3.28 |
2219 | 3598 | 3.306502 | CGACCTTCAGTTGGCTTAGGTAA | 60.307 | 47.826 | 0.00 | 0.00 | 37.33 | 2.85 |
2242 | 3621 | 8.736097 | TTAGGTATAGATATTGGCTTCCTTGA | 57.264 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
2282 | 3661 | 7.293828 | GGAAGAAAGAATCCTCCCTTCAATAT | 58.706 | 38.462 | 0.00 | 0.00 | 33.15 | 1.28 |
2283 | 3662 | 6.663734 | GGAAGAAAGAATCCTCCCTTCAATA | 58.336 | 40.000 | 0.00 | 0.00 | 33.15 | 1.90 |
2284 | 3663 | 5.514169 | GGAAGAAAGAATCCTCCCTTCAAT | 58.486 | 41.667 | 0.00 | 0.00 | 33.15 | 2.57 |
2378 | 3757 | 3.689161 | GCAGATGTAACCAGCAACATACA | 59.311 | 43.478 | 0.00 | 0.00 | 36.48 | 2.29 |
2398 | 3777 | 1.304052 | AAGCAGGCCCATTAACGCA | 60.304 | 52.632 | 0.00 | 0.00 | 0.00 | 5.24 |
2467 | 3849 | 2.283460 | GCCTGGGGAAAGCTGCTT | 60.283 | 61.111 | 9.53 | 9.53 | 0.00 | 3.91 |
2543 | 3925 | 1.927174 | CCAGGTTGCTAGTTCGATTCG | 59.073 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
2676 | 4059 | 3.680490 | AGTTAGGAGAGCCTCTTTTTGC | 58.320 | 45.455 | 0.00 | 0.00 | 45.54 | 3.68 |
2678 | 4061 | 5.568620 | TCAAGTTAGGAGAGCCTCTTTTT | 57.431 | 39.130 | 0.00 | 0.00 | 45.54 | 1.94 |
2700 | 4083 | 0.458669 | GCAGTTAAGCATGGCAGCAT | 59.541 | 50.000 | 10.71 | 2.60 | 36.85 | 3.79 |
2858 | 4241 | 4.153655 | CAGGTGATGTTTCTCTGACACATG | 59.846 | 45.833 | 4.37 | 0.00 | 33.80 | 3.21 |
2889 | 4272 | 0.900182 | GGGGGAAGCCTGTTTCAAGG | 60.900 | 60.000 | 0.00 | 0.00 | 40.63 | 3.61 |
3135 | 4520 | 3.453353 | GGTAGCACCCTATCCTTTACACA | 59.547 | 47.826 | 0.00 | 0.00 | 30.04 | 3.72 |
3154 | 4539 | 2.118732 | TGTGGGGCAGTCTCGGTA | 59.881 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
3268 | 4654 | 3.107642 | ACACAGAGGTAACAAACTCCG | 57.892 | 47.619 | 0.00 | 0.00 | 41.41 | 4.63 |
3754 | 5142 | 1.572415 | AGGCATTGATCCTTCCCACAT | 59.428 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
3808 | 5196 | 3.595173 | GTTTGTTCCACAGTTTGCCTTT | 58.405 | 40.909 | 0.00 | 0.00 | 0.00 | 3.11 |
3885 | 5274 | 6.319658 | ACAAAAAGATCACAAAGAGCAGAGAA | 59.680 | 34.615 | 0.00 | 0.00 | 34.30 | 2.87 |
3969 | 5358 | 6.532988 | AATAGCTAGAAACTTCTTCTCGGT | 57.467 | 37.500 | 0.00 | 0.00 | 38.70 | 4.69 |
4083 | 5474 | 3.297134 | AACAAGGGTGTGAGTGAACAT | 57.703 | 42.857 | 0.00 | 0.00 | 38.27 | 2.71 |
4088 | 5479 | 3.885297 | AGAATGAAACAAGGGTGTGAGTG | 59.115 | 43.478 | 0.00 | 0.00 | 38.27 | 3.51 |
4211 | 5605 | 6.494842 | TGCAGACAAAAAGTATCAGTGAAAC | 58.505 | 36.000 | 0.00 | 0.00 | 0.00 | 2.78 |
4390 | 5787 | 6.261603 | ACAACCACTATGATATTGTGAGCATG | 59.738 | 38.462 | 5.23 | 0.00 | 38.08 | 4.06 |
4391 | 5788 | 6.359804 | ACAACCACTATGATATTGTGAGCAT | 58.640 | 36.000 | 5.23 | 0.00 | 38.08 | 3.79 |
4394 | 5791 | 6.968904 | GCAAACAACCACTATGATATTGTGAG | 59.031 | 38.462 | 5.23 | 0.00 | 38.08 | 3.51 |
4549 | 5946 | 6.459298 | CCAACAAACAATTTGCAGGCAATAAA | 60.459 | 34.615 | 7.62 | 0.00 | 44.39 | 1.40 |
4566 | 5963 | 1.111277 | ACACAAGCTCCCCAACAAAC | 58.889 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
4788 | 6192 | 4.854399 | TGATGTTCGACAATGTTTCCAAC | 58.146 | 39.130 | 0.00 | 0.00 | 0.00 | 3.77 |
4790 | 6194 | 5.506686 | TTTGATGTTCGACAATGTTTCCA | 57.493 | 34.783 | 0.00 | 0.00 | 0.00 | 3.53 |
5006 | 6410 | 8.511604 | ACTCCAGTTGACCATATTTAATGAAG | 57.488 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
5027 | 6431 | 2.880890 | ACTGTTGCATTGACTGAACTCC | 59.119 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
5028 | 6432 | 4.558538 | AACTGTTGCATTGACTGAACTC | 57.441 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
5059 | 6714 | 7.933577 | TCCTTTATCTCGCACAAATCTATGATT | 59.066 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
5108 | 6765 | 1.455822 | ATCTTCAACAAGGACCCCCA | 58.544 | 50.000 | 0.00 | 0.00 | 33.88 | 4.96 |
5218 | 6958 | 8.374743 | AGAAAAATAAAATAGAAGGCAAAGGCA | 58.625 | 29.630 | 0.00 | 0.00 | 43.71 | 4.75 |
5558 | 7299 | 9.753674 | TCATAAAAGGAGTTCCAAATCTTACAT | 57.246 | 29.630 | 0.28 | 0.00 | 38.89 | 2.29 |
5743 | 7484 | 9.472361 | TCGAACCTTTAGCTTCACATATATAAC | 57.528 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
5745 | 7486 | 8.635328 | TGTCGAACCTTTAGCTTCACATATATA | 58.365 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
5746 | 7487 | 7.438459 | GTGTCGAACCTTTAGCTTCACATATAT | 59.562 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
5822 | 7563 | 6.035975 | ACAGCAAAAACAGCAAACAATAACTC | 59.964 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
6593 | 8335 | 7.704899 | ACAAAATAAACAGCAAAACTACACTCC | 59.295 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
6968 | 8711 | 8.433893 | GTCGTTACTTGAGATTTACTTCTTTCC | 58.566 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
7125 | 8873 | 2.955614 | ACCGTTTCGTAAGGACATGAG | 58.044 | 47.619 | 0.00 | 0.00 | 38.47 | 2.90 |
7266 | 9017 | 5.703130 | GCTCAAATTCACTCTACCAACTTCT | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
7299 | 9050 | 6.570378 | GCCACACTTGTTATAGCTTTCACAAT | 60.570 | 38.462 | 4.67 | 0.00 | 0.00 | 2.71 |
7339 | 9090 | 2.158842 | AGCTACAGATGCCCTAAGCTTG | 60.159 | 50.000 | 9.86 | 0.00 | 39.18 | 4.01 |
7365 | 9116 | 1.202498 | GGACGGACTACATGCCTAACC | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 2.85 |
7382 | 9133 | 8.705048 | TTAAAACACCTTACATTTGTTTGGAC | 57.295 | 30.769 | 0.00 | 0.00 | 41.48 | 4.02 |
7399 | 9150 | 6.635030 | ACTCCCTCAAGTGATTTAAAACAC | 57.365 | 37.500 | 18.08 | 18.08 | 37.30 | 3.32 |
7761 | 9522 | 4.085357 | TGCCTGCCGAATGATTAACTAT | 57.915 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
7822 | 9583 | 4.507916 | TCCTCCTCGGCCTCCTCG | 62.508 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
7831 | 9592 | 3.133003 | TGCCTCTTTATTCTTCCTCCTCG | 59.867 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
7993 | 9754 | 4.301072 | TCCTTCCAAATCCTGGTACAAG | 57.699 | 45.455 | 0.00 | 0.00 | 46.51 | 3.16 |
8032 | 9793 | 8.827177 | ATATCCATGTAACAACTAATACACGG | 57.173 | 34.615 | 0.00 | 0.00 | 36.86 | 4.94 |
8091 | 9853 | 0.815734 | ACGGTCCCTGACAGATAACG | 59.184 | 55.000 | 3.32 | 8.39 | 33.68 | 3.18 |
8092 | 9854 | 2.100989 | AGACGGTCCCTGACAGATAAC | 58.899 | 52.381 | 3.32 | 0.00 | 33.68 | 1.89 |
8096 | 9892 | 0.675837 | CGTAGACGGTCCCTGACAGA | 60.676 | 60.000 | 3.32 | 0.00 | 33.68 | 3.41 |
8175 | 9972 | 1.001293 | ACAAAGCGCTCAGACTGATCA | 59.999 | 47.619 | 12.06 | 0.00 | 0.00 | 2.92 |
8285 | 10086 | 6.369065 | AGCTCAAAGAGTACTTTCGGTATTTG | 59.631 | 38.462 | 0.00 | 0.00 | 43.41 | 2.32 |
8286 | 10087 | 6.465084 | AGCTCAAAGAGTACTTTCGGTATTT | 58.535 | 36.000 | 0.00 | 0.00 | 43.41 | 1.40 |
8291 | 10092 | 3.914312 | TGAGCTCAAAGAGTACTTTCGG | 58.086 | 45.455 | 15.67 | 0.00 | 43.41 | 4.30 |
8292 | 10093 | 5.907197 | TTTGAGCTCAAAGAGTACTTTCG | 57.093 | 39.130 | 32.86 | 0.00 | 43.41 | 3.46 |
8364 | 10188 | 8.408043 | AATGTGATCTTTATCAAAGTTCCACA | 57.592 | 30.769 | 16.92 | 16.92 | 43.69 | 4.17 |
8366 | 10190 | 8.859090 | ACAAATGTGATCTTTATCAAAGTTCCA | 58.141 | 29.630 | 0.00 | 5.77 | 43.69 | 3.53 |
8367 | 10191 | 9.346725 | GACAAATGTGATCTTTATCAAAGTTCC | 57.653 | 33.333 | 0.00 | 1.75 | 43.69 | 3.62 |
8368 | 10192 | 9.897744 | TGACAAATGTGATCTTTATCAAAGTTC | 57.102 | 29.630 | 0.00 | 1.66 | 43.69 | 3.01 |
8382 | 10206 | 1.167851 | CCACGCCTGACAAATGTGAT | 58.832 | 50.000 | 0.00 | 0.00 | 32.39 | 3.06 |
8437 | 10262 | 7.854534 | ACAAAATTGATGCTACTTTCAAAAGC | 58.145 | 30.769 | 0.00 | 0.00 | 39.63 | 3.51 |
8445 | 10270 | 9.777297 | ACCAATAAAACAAAATTGATGCTACTT | 57.223 | 25.926 | 0.00 | 0.00 | 35.53 | 2.24 |
8446 | 10271 | 9.423061 | GACCAATAAAACAAAATTGATGCTACT | 57.577 | 29.630 | 0.00 | 0.00 | 35.53 | 2.57 |
8447 | 10272 | 9.202273 | TGACCAATAAAACAAAATTGATGCTAC | 57.798 | 29.630 | 0.00 | 0.00 | 35.53 | 3.58 |
8449 | 10274 | 7.714377 | TGTGACCAATAAAACAAAATTGATGCT | 59.286 | 29.630 | 0.00 | 0.00 | 35.53 | 3.79 |
8451 | 10276 | 9.649024 | GTTGTGACCAATAAAACAAAATTGATG | 57.351 | 29.630 | 0.00 | 0.00 | 35.53 | 3.07 |
8453 | 10278 | 7.545965 | ACGTTGTGACCAATAAAACAAAATTGA | 59.454 | 29.630 | 0.00 | 0.00 | 35.53 | 2.57 |
8456 | 10281 | 6.477360 | GGACGTTGTGACCAATAAAACAAAAT | 59.523 | 34.615 | 0.00 | 0.00 | 34.54 | 1.82 |
8457 | 10282 | 5.805994 | GGACGTTGTGACCAATAAAACAAAA | 59.194 | 36.000 | 0.00 | 0.00 | 34.54 | 2.44 |
8505 | 10333 | 6.980593 | ACAAATGTTCTAAGTGCTTGCAATA | 58.019 | 32.000 | 0.00 | 0.00 | 0.00 | 1.90 |
8506 | 10334 | 5.846203 | ACAAATGTTCTAAGTGCTTGCAAT | 58.154 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
8530 | 10358 | 7.958674 | TGAATTTTTCTTTTTGGTGAACTTCG | 58.041 | 30.769 | 0.00 | 0.00 | 0.00 | 3.79 |
8578 | 10406 | 8.992073 | GCTTGATGAACAATAAAACCAAAAGAT | 58.008 | 29.630 | 0.00 | 0.00 | 37.88 | 2.40 |
8613 | 10441 | 1.867698 | GCCGAGTATCTGAGCTCAAGC | 60.868 | 57.143 | 18.85 | 8.00 | 42.49 | 4.01 |
8614 | 10442 | 1.599171 | CGCCGAGTATCTGAGCTCAAG | 60.599 | 57.143 | 18.85 | 11.92 | 0.00 | 3.02 |
8615 | 10443 | 0.382158 | CGCCGAGTATCTGAGCTCAA | 59.618 | 55.000 | 18.85 | 9.34 | 0.00 | 3.02 |
8616 | 10444 | 0.748367 | ACGCCGAGTATCTGAGCTCA | 60.748 | 55.000 | 17.19 | 17.19 | 0.00 | 4.26 |
8617 | 10445 | 0.382515 | AACGCCGAGTATCTGAGCTC | 59.617 | 55.000 | 6.82 | 6.82 | 0.00 | 4.09 |
8618 | 10446 | 0.818296 | AAACGCCGAGTATCTGAGCT | 59.182 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
8619 | 10447 | 1.201343 | GAAACGCCGAGTATCTGAGC | 58.799 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
8620 | 10448 | 2.356382 | AGAGAAACGCCGAGTATCTGAG | 59.644 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
8621 | 10449 | 2.366533 | AGAGAAACGCCGAGTATCTGA | 58.633 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
8622 | 10450 | 2.853731 | AGAGAAACGCCGAGTATCTG | 57.146 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
8623 | 10451 | 4.978083 | TTTAGAGAAACGCCGAGTATCT | 57.022 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
8624 | 10452 | 5.521544 | AGATTTAGAGAAACGCCGAGTATC | 58.478 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
8625 | 10453 | 5.517322 | AGATTTAGAGAAACGCCGAGTAT | 57.483 | 39.130 | 0.00 | 0.00 | 0.00 | 2.12 |
8626 | 10454 | 4.978083 | AGATTTAGAGAAACGCCGAGTA | 57.022 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
8627 | 10455 | 3.870633 | AGATTTAGAGAAACGCCGAGT | 57.129 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
8628 | 10456 | 3.242123 | GCAAGATTTAGAGAAACGCCGAG | 60.242 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
8629 | 10457 | 2.671396 | GCAAGATTTAGAGAAACGCCGA | 59.329 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
8630 | 10458 | 2.415168 | TGCAAGATTTAGAGAAACGCCG | 59.585 | 45.455 | 0.00 | 0.00 | 0.00 | 6.46 |
8631 | 10459 | 4.346129 | CATGCAAGATTTAGAGAAACGCC | 58.654 | 43.478 | 0.00 | 0.00 | 0.00 | 5.68 |
8637 | 10465 | 4.835678 | TCACTGCATGCAAGATTTAGAGA | 58.164 | 39.130 | 22.88 | 9.21 | 0.00 | 3.10 |
8640 | 10468 | 4.103357 | GCTTCACTGCATGCAAGATTTAG | 58.897 | 43.478 | 22.88 | 16.28 | 0.00 | 1.85 |
8668 | 10496 | 5.999205 | ATTCTGATTATGTGGCACCAAAA | 57.001 | 34.783 | 16.26 | 7.01 | 0.00 | 2.44 |
8669 | 10497 | 5.245751 | ACAATTCTGATTATGTGGCACCAAA | 59.754 | 36.000 | 16.26 | 9.66 | 0.00 | 3.28 |
8670 | 10498 | 4.771577 | ACAATTCTGATTATGTGGCACCAA | 59.228 | 37.500 | 16.26 | 9.68 | 0.00 | 3.67 |
8682 | 10510 | 8.847196 | CATCCATATCAACTGACAATTCTGATT | 58.153 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
8687 | 10515 | 9.499479 | AGTATCATCCATATCAACTGACAATTC | 57.501 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
8725 | 10553 | 9.925545 | TCCTATCAAGTGTACCATACTAAGTTA | 57.074 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
8737 | 10565 | 5.790593 | TCAACCAACTCCTATCAAGTGTAC | 58.209 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
8742 | 10570 | 3.370953 | CCCCTCAACCAACTCCTATCAAG | 60.371 | 52.174 | 0.00 | 0.00 | 0.00 | 3.02 |
8743 | 10571 | 2.576191 | CCCCTCAACCAACTCCTATCAA | 59.424 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
8744 | 10572 | 2.196595 | CCCCTCAACCAACTCCTATCA | 58.803 | 52.381 | 0.00 | 0.00 | 0.00 | 2.15 |
8745 | 10573 | 1.134068 | GCCCCTCAACCAACTCCTATC | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 2.08 |
8746 | 10574 | 0.919710 | GCCCCTCAACCAACTCCTAT | 59.080 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
8747 | 10575 | 0.474854 | TGCCCCTCAACCAACTCCTA | 60.475 | 55.000 | 0.00 | 0.00 | 0.00 | 2.94 |
8748 | 10576 | 1.360393 | TTGCCCCTCAACCAACTCCT | 61.360 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
8749 | 10577 | 1.152830 | TTGCCCCTCAACCAACTCC | 59.847 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
8750 | 10578 | 4.920828 | TTGCCCCTCAACCAACTC | 57.079 | 55.556 | 0.00 | 0.00 | 0.00 | 3.01 |
8757 | 10585 | 0.112995 | AGCATGAAGTTGCCCCTCAA | 59.887 | 50.000 | 0.00 | 0.00 | 43.83 | 3.02 |
8758 | 10586 | 0.112995 | AAGCATGAAGTTGCCCCTCA | 59.887 | 50.000 | 0.00 | 0.00 | 43.83 | 3.86 |
8759 | 10587 | 0.529378 | CAAGCATGAAGTTGCCCCTC | 59.471 | 55.000 | 0.00 | 0.00 | 43.83 | 4.30 |
8760 | 10588 | 0.112995 | TCAAGCATGAAGTTGCCCCT | 59.887 | 50.000 | 0.00 | 0.00 | 43.83 | 4.79 |
8761 | 10589 | 1.188863 | ATCAAGCATGAAGTTGCCCC | 58.811 | 50.000 | 0.00 | 0.00 | 43.83 | 5.80 |
8762 | 10590 | 2.360165 | CCTATCAAGCATGAAGTTGCCC | 59.640 | 50.000 | 0.00 | 0.00 | 43.83 | 5.36 |
8763 | 10591 | 3.282021 | TCCTATCAAGCATGAAGTTGCC | 58.718 | 45.455 | 0.00 | 0.00 | 43.83 | 4.52 |
8764 | 10592 | 3.944015 | ACTCCTATCAAGCATGAAGTTGC | 59.056 | 43.478 | 0.00 | 0.00 | 39.49 | 4.17 |
8765 | 10593 | 5.163683 | CCAACTCCTATCAAGCATGAAGTTG | 60.164 | 44.000 | 19.88 | 19.88 | 39.49 | 3.16 |
8766 | 10594 | 4.946157 | CCAACTCCTATCAAGCATGAAGTT | 59.054 | 41.667 | 0.00 | 0.00 | 39.49 | 2.66 |
8767 | 10595 | 4.018960 | ACCAACTCCTATCAAGCATGAAGT | 60.019 | 41.667 | 0.00 | 0.00 | 39.49 | 3.01 |
8768 | 10596 | 4.521146 | ACCAACTCCTATCAAGCATGAAG | 58.479 | 43.478 | 0.00 | 0.00 | 39.49 | 3.02 |
8769 | 10597 | 4.574674 | ACCAACTCCTATCAAGCATGAA | 57.425 | 40.909 | 0.00 | 0.00 | 39.49 | 2.57 |
8770 | 10598 | 4.019411 | TCAACCAACTCCTATCAAGCATGA | 60.019 | 41.667 | 0.00 | 0.00 | 40.57 | 3.07 |
8771 | 10599 | 4.264253 | TCAACCAACTCCTATCAAGCATG | 58.736 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
8772 | 10600 | 4.521146 | CTCAACCAACTCCTATCAAGCAT | 58.479 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
8773 | 10601 | 3.307691 | CCTCAACCAACTCCTATCAAGCA | 60.308 | 47.826 | 0.00 | 0.00 | 0.00 | 3.91 |
8774 | 10602 | 3.274288 | CCTCAACCAACTCCTATCAAGC | 58.726 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
8779 | 10607 | 0.919710 | GCCCCTCAACCAACTCCTAT | 59.080 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
8789 | 10617 | 0.038166 | TGATGAAGTGGCCCCTCAAC | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
8795 | 10623 | 3.259123 | AGACAATTTTGATGAAGTGGCCC | 59.741 | 43.478 | 0.00 | 0.00 | 33.26 | 5.80 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.