Multiple sequence alignment - TraesCS4D01G163400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G163400 chr4D 100.000 8847 0 0 1 8847 256548475 256557321 0.000000e+00 16338.0
1 TraesCS4D01G163400 chr4A 93.845 6986 278 76 1497 8381 344029226 344036160 0.000000e+00 10379.0
2 TraesCS4D01G163400 chr4A 93.878 343 8 1 1009 1351 344028886 344029215 1.030000e-138 505.0
3 TraesCS4D01G163400 chr4A 90.756 238 10 5 676 913 344028246 344028471 3.100000e-79 307.0
4 TraesCS4D01G163400 chr4A 90.000 170 9 3 1338 1499 116143540 116143371 6.960000e-51 213.0
5 TraesCS4D01G163400 chr4B 95.000 3540 118 20 1497 5027 351871124 351874613 0.000000e+00 5502.0
6 TraesCS4D01G163400 chr4B 94.158 3646 115 45 5180 8774 351875100 351878698 0.000000e+00 5463.0
7 TraesCS4D01G163400 chr4B 95.840 649 17 4 710 1351 351870468 351871113 0.000000e+00 1040.0
8 TraesCS4D01G163400 chr4B 82.384 562 74 22 67 610 416117908 416118462 4.840000e-127 466.0
9 TraesCS4D01G163400 chr4B 96.711 152 5 0 5030 5181 351874867 351875018 4.100000e-63 254.0
10 TraesCS4D01G163400 chr4B 97.959 49 1 0 5030 5078 351874810 351874858 1.580000e-12 86.1
11 TraesCS4D01G163400 chr4B 97.826 46 1 0 628 673 351869380 351869425 7.360000e-11 80.5
12 TraesCS4D01G163400 chr1D 82.968 593 72 19 42 610 384781068 384780481 7.920000e-140 508.0
13 TraesCS4D01G163400 chr3A 83.158 570 61 19 62 610 410116035 410116590 1.030000e-133 488.0
14 TraesCS4D01G163400 chr3A 94.558 147 8 0 1351 1497 674734169 674734023 2.480000e-55 228.0
15 TraesCS4D01G163400 chr3A 93.421 152 8 1 1350 1499 628192092 628191941 3.210000e-54 224.0
16 TraesCS4D01G163400 chr3A 92.949 156 6 2 1350 1500 562100835 562100680 1.160000e-53 222.0
17 TraesCS4D01G163400 chr3A 91.824 159 9 3 1345 1499 380910342 380910500 1.500000e-52 219.0
18 TraesCS4D01G163400 chr3A 84.076 157 15 7 3303 3457 712231884 712231736 9.260000e-30 143.0
19 TraesCS4D01G163400 chr3A 91.304 46 3 1 8800 8844 108372611 108372566 2.670000e-05 62.1
20 TraesCS4D01G163400 chr3A 94.872 39 1 1 8307 8345 523315446 523315409 9.590000e-05 60.2
21 TraesCS4D01G163400 chr1B 80.915 634 91 20 1 610 629808946 629809573 2.890000e-129 473.0
22 TraesCS4D01G163400 chr1B 81.860 215 32 6 3242 3451 320949406 320949618 3.280000e-39 174.0
23 TraesCS4D01G163400 chr6A 84.805 487 54 10 128 608 454473448 454473920 1.040000e-128 472.0
24 TraesCS4D01G163400 chr6A 93.919 148 7 1 1352 1499 38404620 38404475 1.160000e-53 222.0
25 TraesCS4D01G163400 chr6B 82.143 560 76 20 67 610 124993457 124992906 8.090000e-125 459.0
26 TraesCS4D01G163400 chr5B 83.929 448 30 18 1 436 272165202 272165619 2.990000e-104 390.0
27 TraesCS4D01G163400 chr2A 78.120 617 82 31 18 610 422100122 422100709 8.510000e-90 342.0
28 TraesCS4D01G163400 chr2A 94.521 146 6 1 1352 1497 194551858 194552001 3.210000e-54 224.0
29 TraesCS4D01G163400 chr2A 84.106 151 14 7 3303 3451 177949655 177949797 4.310000e-28 137.0
30 TraesCS4D01G163400 chr2A 93.333 45 2 1 8588 8631 14923417 14923373 2.060000e-06 65.8
31 TraesCS4D01G163400 chr2A 92.857 42 3 0 8800 8841 49013865 49013824 2.670000e-05 62.1
32 TraesCS4D01G163400 chr7A 78.417 556 80 20 67 608 412892911 412893440 8.570000e-85 326.0
33 TraesCS4D01G163400 chr7A 81.340 209 32 6 3248 3451 577686232 577686026 7.110000e-36 163.0
34 TraesCS4D01G163400 chr7A 81.043 211 27 10 3248 3451 17869357 17869153 1.190000e-33 156.0
35 TraesCS4D01G163400 chr1A 93.960 149 9 0 1351 1499 509012165 509012017 8.940000e-55 226.0
36 TraesCS4D01G163400 chr1A 93.464 153 6 4 1351 1499 581543894 581544046 3.210000e-54 224.0
37 TraesCS4D01G163400 chr2D 83.028 218 27 10 3242 3453 166152371 166152584 1.170000e-43 189.0
38 TraesCS4D01G163400 chr2D 80.000 215 36 5 3242 3451 588451352 588451564 1.540000e-32 152.0
39 TraesCS4D01G163400 chr2D 76.023 171 20 9 8463 8631 12776664 12776513 1.590000e-07 69.4
40 TraesCS4D01G163400 chrUn 90.476 42 2 1 8306 8347 38423862 38423823 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G163400 chr4D 256548475 256557321 8846 False 16338.000000 16338 100.000000 1 8847 1 chr4D.!!$F1 8846
1 TraesCS4D01G163400 chr4A 344028246 344036160 7914 False 3730.333333 10379 92.826333 676 8381 3 chr4A.!!$F1 7705
2 TraesCS4D01G163400 chr4B 351869380 351878698 9318 False 2070.933333 5502 96.249000 628 8774 6 chr4B.!!$F2 8146
3 TraesCS4D01G163400 chr4B 416117908 416118462 554 False 466.000000 466 82.384000 67 610 1 chr4B.!!$F1 543
4 TraesCS4D01G163400 chr1D 384780481 384781068 587 True 508.000000 508 82.968000 42 610 1 chr1D.!!$R1 568
5 TraesCS4D01G163400 chr3A 410116035 410116590 555 False 488.000000 488 83.158000 62 610 1 chr3A.!!$F2 548
6 TraesCS4D01G163400 chr1B 629808946 629809573 627 False 473.000000 473 80.915000 1 610 1 chr1B.!!$F2 609
7 TraesCS4D01G163400 chr6B 124992906 124993457 551 True 459.000000 459 82.143000 67 610 1 chr6B.!!$R1 543
8 TraesCS4D01G163400 chr2A 422100122 422100709 587 False 342.000000 342 78.120000 18 610 1 chr2A.!!$F3 592
9 TraesCS4D01G163400 chr7A 412892911 412893440 529 False 326.000000 326 78.417000 67 608 1 chr7A.!!$F1 541


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 598 0.108756 GTAGTGGAGCAGTTCGGGAC 60.109 60.000 0.00 0.00 0.00 4.46 F
823 1872 0.688487 CCCACCACTCGTTTTCCCTA 59.312 55.000 0.00 0.00 0.00 3.53 F
2678 4061 0.322456 GTGAATGCCACCCTACAGCA 60.322 55.000 0.00 0.00 39.86 4.41 F
4286 5682 0.901124 TGCCTTGCAACAAAAGGTGT 59.099 45.000 0.00 0.00 45.14 4.16 F
4790 6194 1.202651 AGTTGTAAGCGTCTGCAGGTT 60.203 47.619 15.13 3.84 46.23 3.50 F
5558 7299 3.114668 TGCTCGTTTACAGTTGGCTTA 57.885 42.857 0.00 0.00 0.00 3.09 F
7111 8859 0.396139 CTTGCCCCATGTGCTATGGT 60.396 55.000 16.14 0.00 37.48 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 2995 1.135972 GCAGACCAATTACTGTGCACG 60.136 52.381 13.13 9.67 36.62 5.34 R
2700 4083 0.458669 GCAGTTAAGCATGGCAGCAT 59.541 50.000 10.71 2.60 36.85 3.79 R
4566 5963 1.111277 ACACAAGCTCCCCAACAAAC 58.889 50.000 0.00 0.00 0.00 2.93 R
5108 6765 1.455822 ATCTTCAACAAGGACCCCCA 58.544 50.000 0.00 0.00 33.88 4.96 R
5822 7563 6.035975 ACAGCAAAAACAGCAAACAATAACTC 59.964 34.615 0.00 0.00 0.00 3.01 R
7365 9116 1.202498 GGACGGACTACATGCCTAACC 60.202 57.143 0.00 0.00 0.00 2.85 R
8789 10617 0.038166 TGATGAAGTGGCCCCTCAAC 59.962 55.000 0.00 0.00 0.00 3.18 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.141665 CAGGATGATGGCGACGACA 59.858 57.895 5.51 5.51 39.69 4.35
27 28 0.249615 CAGGATGATGGCGACGACAT 60.250 55.000 17.96 17.96 39.69 3.06
28 29 0.465705 AGGATGATGGCGACGACATT 59.534 50.000 19.04 1.83 27.61 2.71
117 128 0.462047 GCCCATCATTCGTTCGACCT 60.462 55.000 0.00 0.00 0.00 3.85
118 129 1.290203 CCCATCATTCGTTCGACCTG 58.710 55.000 0.00 0.00 0.00 4.00
184 199 4.872552 GGAAAAGCTTCAACCAGCATGGA 61.873 47.826 0.00 0.00 46.72 3.41
231 247 4.994471 CACTGAGTGCTGCGGCCA 62.994 66.667 16.57 4.79 37.74 5.36
318 337 3.237290 GCGTTTTGCTACGACGGT 58.763 55.556 10.06 0.00 43.99 4.83
321 340 0.578211 CGTTTTGCTACGACGGTGTT 59.422 50.000 0.00 0.00 43.99 3.32
328 347 1.593933 GCTACGACGGTGTTGTTTTGA 59.406 47.619 0.00 0.00 31.92 2.69
357 376 0.620556 AGGCGACATCCTGTTGGAAT 59.379 50.000 0.00 0.00 46.80 3.01
369 388 2.642254 TTGGAATCGGCGAGGACGT 61.642 57.895 17.22 0.00 41.98 4.34
464 500 2.025441 GGCAGCGCAACGTGAAAA 59.975 55.556 11.47 0.00 0.00 2.29
465 501 1.587613 GGCAGCGCAACGTGAAAAA 60.588 52.632 11.47 0.00 0.00 1.94
517 553 1.522580 GGCTGCTCGGGATGAACTC 60.523 63.158 0.00 0.00 0.00 3.01
555 598 0.108756 GTAGTGGAGCAGTTCGGGAC 60.109 60.000 0.00 0.00 0.00 4.46
600 643 2.577644 GAATCGTACGTGCGCGGA 60.578 61.111 25.20 13.98 43.45 5.54
615 658 4.203076 GGATAGACCGGCGCGTGT 62.203 66.667 8.43 0.00 0.00 4.49
616 659 2.654404 GATAGACCGGCGCGTGTC 60.654 66.667 17.32 17.32 0.00 3.67
617 660 3.405592 GATAGACCGGCGCGTGTCA 62.406 63.158 24.15 13.67 32.50 3.58
618 661 3.411418 ATAGACCGGCGCGTGTCAG 62.411 63.158 24.15 0.00 32.50 3.51
661 704 7.701539 AGTAGATGATGGTTTGTGCAATTTA 57.298 32.000 0.00 0.00 0.00 1.40
696 750 0.749091 TACTCTGCTACCGGCGCTAA 60.749 55.000 16.19 4.87 45.43 3.09
823 1872 0.688487 CCCACCACTCGTTTTCCCTA 59.312 55.000 0.00 0.00 0.00 3.53
852 1901 1.143073 GCCCCGTTTATTCCATCTCCT 59.857 52.381 0.00 0.00 0.00 3.69
972 2028 1.627297 AAGCCCCGATCTCCTTCACC 61.627 60.000 0.00 0.00 0.00 4.02
1010 2378 5.466728 CCAGATCGTTGTTTATGAGGTATGG 59.533 44.000 0.00 0.00 0.00 2.74
1175 2543 4.704540 TGGTGGCGATAGTTCATGATTTTT 59.295 37.500 0.00 0.00 39.35 1.94
1188 2556 2.899976 TGATTTTTGCGCTCTCGGATA 58.100 42.857 9.73 0.00 35.55 2.59
1190 2558 2.380084 TTTTTGCGCTCTCGGATACT 57.620 45.000 9.73 0.00 35.55 2.12
1205 2573 3.552890 CGGATACTGCAATCGATTCTGGA 60.553 47.826 7.92 0.00 0.00 3.86
1351 2719 9.608617 GTAAGTGTTTTCCTGCTTATTAAGAAC 57.391 33.333 7.63 2.76 0.00 3.01
1352 2720 7.817418 AGTGTTTTCCTGCTTATTAAGAACA 57.183 32.000 7.63 5.12 0.00 3.18
1355 2723 8.135529 GTGTTTTCCTGCTTATTAAGAACAGTT 58.864 33.333 7.63 0.00 0.00 3.16
1356 2724 8.691797 TGTTTTCCTGCTTATTAAGAACAGTTT 58.308 29.630 7.63 0.00 0.00 2.66
1357 2725 9.529325 GTTTTCCTGCTTATTAAGAACAGTTTT 57.471 29.630 7.63 0.00 0.00 2.43
1358 2726 9.528018 TTTTCCTGCTTATTAAGAACAGTTTTG 57.472 29.630 7.63 0.00 0.00 2.44
1359 2727 6.677913 TCCTGCTTATTAAGAACAGTTTTGC 58.322 36.000 7.63 0.00 0.00 3.68
1360 2728 6.490040 TCCTGCTTATTAAGAACAGTTTTGCT 59.510 34.615 7.63 0.00 0.00 3.91
1361 2729 7.663905 TCCTGCTTATTAAGAACAGTTTTGCTA 59.336 33.333 7.63 0.00 0.00 3.49
1362 2730 8.296713 CCTGCTTATTAAGAACAGTTTTGCTAA 58.703 33.333 7.63 0.00 0.00 3.09
1363 2731 9.677567 CTGCTTATTAAGAACAGTTTTGCTAAA 57.322 29.630 7.63 0.00 0.00 1.85
1364 2732 9.677567 TGCTTATTAAGAACAGTTTTGCTAAAG 57.322 29.630 7.63 0.00 0.00 1.85
1365 2733 8.639428 GCTTATTAAGAACAGTTTTGCTAAAGC 58.361 33.333 7.63 0.00 42.50 3.51
1392 2760 8.837788 CATCTAGATGTTCCATAAGTATTGCA 57.162 34.615 22.42 0.00 34.23 4.08
1393 2761 8.715998 CATCTAGATGTTCCATAAGTATTGCAC 58.284 37.037 22.42 0.00 34.23 4.57
1394 2762 7.791029 TCTAGATGTTCCATAAGTATTGCACA 58.209 34.615 0.00 0.00 0.00 4.57
1395 2763 8.432013 TCTAGATGTTCCATAAGTATTGCACAT 58.568 33.333 0.00 0.00 0.00 3.21
1396 2764 7.502120 AGATGTTCCATAAGTATTGCACATC 57.498 36.000 6.91 6.91 39.62 3.06
1397 2765 7.285566 AGATGTTCCATAAGTATTGCACATCT 58.714 34.615 10.08 10.08 42.98 2.90
1398 2766 8.432013 AGATGTTCCATAAGTATTGCACATCTA 58.568 33.333 12.72 0.00 44.89 1.98
1399 2767 8.978874 ATGTTCCATAAGTATTGCACATCTAA 57.021 30.769 0.00 0.00 0.00 2.10
1400 2768 8.437360 TGTTCCATAAGTATTGCACATCTAAG 57.563 34.615 0.00 0.00 0.00 2.18
1401 2769 8.046708 TGTTCCATAAGTATTGCACATCTAAGT 58.953 33.333 0.00 0.00 0.00 2.24
1402 2770 8.552034 GTTCCATAAGTATTGCACATCTAAGTC 58.448 37.037 0.00 0.00 0.00 3.01
1403 2771 7.217200 TCCATAAGTATTGCACATCTAAGTCC 58.783 38.462 0.00 0.00 0.00 3.85
1404 2772 7.071196 TCCATAAGTATTGCACATCTAAGTCCT 59.929 37.037 0.00 0.00 0.00 3.85
1405 2773 8.367911 CCATAAGTATTGCACATCTAAGTCCTA 58.632 37.037 0.00 0.00 0.00 2.94
1406 2774 9.935241 CATAAGTATTGCACATCTAAGTCCTAT 57.065 33.333 0.00 0.00 0.00 2.57
1407 2775 9.935241 ATAAGTATTGCACATCTAAGTCCTATG 57.065 33.333 0.00 0.00 0.00 2.23
1408 2776 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
1417 2785 8.489676 ACATCTAAGTCCTATGTGATTGATCT 57.510 34.615 0.00 0.00 32.74 2.75
1418 2786 8.932610 ACATCTAAGTCCTATGTGATTGATCTT 58.067 33.333 0.00 0.00 32.74 2.40
1421 2789 8.568794 TCTAAGTCCTATGTGATTGATCTTACG 58.431 37.037 0.00 0.00 0.00 3.18
1422 2790 6.716934 AGTCCTATGTGATTGATCTTACGT 57.283 37.500 0.00 0.00 0.00 3.57
1423 2791 7.113658 AGTCCTATGTGATTGATCTTACGTT 57.886 36.000 0.00 0.00 0.00 3.99
1424 2792 6.980978 AGTCCTATGTGATTGATCTTACGTTG 59.019 38.462 0.00 0.00 0.00 4.10
1425 2793 6.978659 GTCCTATGTGATTGATCTTACGTTGA 59.021 38.462 0.00 0.00 0.00 3.18
1426 2794 7.168302 GTCCTATGTGATTGATCTTACGTTGAG 59.832 40.741 0.00 0.00 0.00 3.02
1427 2795 7.068226 TCCTATGTGATTGATCTTACGTTGAGA 59.932 37.037 0.00 0.00 0.00 3.27
1428 2796 7.869937 CCTATGTGATTGATCTTACGTTGAGAT 59.130 37.037 12.34 12.34 36.60 2.75
1429 2797 9.254133 CTATGTGATTGATCTTACGTTGAGATT 57.746 33.333 13.35 1.29 34.13 2.40
1430 2798 7.525688 TGTGATTGATCTTACGTTGAGATTC 57.474 36.000 13.35 9.08 34.13 2.52
1431 2799 6.253512 TGTGATTGATCTTACGTTGAGATTCG 59.746 38.462 13.35 0.00 34.13 3.34
1432 2800 6.253727 GTGATTGATCTTACGTTGAGATTCGT 59.746 38.462 13.35 0.00 42.82 3.85
1433 2801 6.253512 TGATTGATCTTACGTTGAGATTCGTG 59.746 38.462 13.35 0.00 40.50 4.35
1434 2802 5.055642 TGATCTTACGTTGAGATTCGTGT 57.944 39.130 13.35 0.00 40.50 4.49
1435 2803 4.857037 TGATCTTACGTTGAGATTCGTGTG 59.143 41.667 13.35 0.00 40.50 3.82
1436 2804 3.571571 TCTTACGTTGAGATTCGTGTGG 58.428 45.455 0.00 0.00 40.50 4.17
1437 2805 3.253921 TCTTACGTTGAGATTCGTGTGGA 59.746 43.478 0.00 0.00 40.50 4.02
1438 2806 2.743636 ACGTTGAGATTCGTGTGGAT 57.256 45.000 0.00 0.00 38.85 3.41
1439 2807 3.861276 ACGTTGAGATTCGTGTGGATA 57.139 42.857 0.00 0.00 38.85 2.59
1440 2808 4.386867 ACGTTGAGATTCGTGTGGATAT 57.613 40.909 0.00 0.00 38.85 1.63
1441 2809 4.755411 ACGTTGAGATTCGTGTGGATATT 58.245 39.130 0.00 0.00 38.85 1.28
1442 2810 5.175859 ACGTTGAGATTCGTGTGGATATTT 58.824 37.500 0.00 0.00 38.85 1.40
1443 2811 5.642063 ACGTTGAGATTCGTGTGGATATTTT 59.358 36.000 0.00 0.00 38.85 1.82
1444 2812 6.148811 ACGTTGAGATTCGTGTGGATATTTTT 59.851 34.615 0.00 0.00 38.85 1.94
1467 2835 7.832503 TTTTTCCTTTTTCTCTTTCTGCTTG 57.167 32.000 0.00 0.00 0.00 4.01
1468 2836 6.773976 TTTCCTTTTTCTCTTTCTGCTTGA 57.226 33.333 0.00 0.00 0.00 3.02
1469 2837 6.966534 TTCCTTTTTCTCTTTCTGCTTGAT 57.033 33.333 0.00 0.00 0.00 2.57
1470 2838 6.966534 TCCTTTTTCTCTTTCTGCTTGATT 57.033 33.333 0.00 0.00 0.00 2.57
1471 2839 6.974965 TCCTTTTTCTCTTTCTGCTTGATTC 58.025 36.000 0.00 0.00 0.00 2.52
1472 2840 6.547141 TCCTTTTTCTCTTTCTGCTTGATTCA 59.453 34.615 0.00 0.00 0.00 2.57
1473 2841 6.640092 CCTTTTTCTCTTTCTGCTTGATTCAC 59.360 38.462 0.00 0.00 0.00 3.18
1474 2842 6.949352 TTTTCTCTTTCTGCTTGATTCACT 57.051 33.333 0.00 0.00 0.00 3.41
1475 2843 6.551385 TTTCTCTTTCTGCTTGATTCACTC 57.449 37.500 0.00 0.00 0.00 3.51
1476 2844 5.219343 TCTCTTTCTGCTTGATTCACTCA 57.781 39.130 0.00 0.00 0.00 3.41
1477 2845 4.993584 TCTCTTTCTGCTTGATTCACTCAC 59.006 41.667 0.00 0.00 32.17 3.51
1478 2846 4.965814 TCTTTCTGCTTGATTCACTCACT 58.034 39.130 0.00 0.00 32.17 3.41
1479 2847 5.371526 TCTTTCTGCTTGATTCACTCACTT 58.628 37.500 0.00 0.00 32.17 3.16
1480 2848 6.524734 TCTTTCTGCTTGATTCACTCACTTA 58.475 36.000 0.00 0.00 32.17 2.24
1481 2849 6.648310 TCTTTCTGCTTGATTCACTCACTTAG 59.352 38.462 0.00 0.00 32.17 2.18
1482 2850 5.728637 TCTGCTTGATTCACTCACTTAGA 57.271 39.130 0.00 0.00 32.17 2.10
1483 2851 6.291648 TCTGCTTGATTCACTCACTTAGAT 57.708 37.500 0.00 0.00 32.17 1.98
1484 2852 6.104665 TCTGCTTGATTCACTCACTTAGATG 58.895 40.000 0.00 0.00 32.17 2.90
1485 2853 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
1486 2854 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
1487 2855 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
1488 2856 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
1489 2857 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
1490 2858 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
1491 2859 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
1492 2860 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
1493 2861 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
1494 2862 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
1495 2863 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
1601 2973 6.045318 TGAAGTTGCTATGCTCTTATCAGTC 58.955 40.000 0.00 0.00 0.00 3.51
1615 2987 5.661759 TCTTATCAGTCCTTTAGGTTCCTCC 59.338 44.000 0.00 0.00 36.34 4.30
1623 2995 4.227527 TCCTTTAGGTTCCTCCATTCCTTC 59.772 45.833 0.00 0.00 39.02 3.46
1640 3012 2.159627 CCTTCGTGCACAGTAATTGGTC 59.840 50.000 18.64 0.00 0.00 4.02
1654 3026 7.283127 ACAGTAATTGGTCTGCCACTATTATTG 59.717 37.037 9.81 9.81 46.01 1.90
1834 3212 1.996798 ACTGGTCTCCGTTTCTCTCA 58.003 50.000 0.00 0.00 0.00 3.27
1854 3232 9.088987 TCTCTCAATAAATATTTATTTGCCCCC 57.911 33.333 24.51 0.00 40.37 5.40
2078 3457 4.871933 TCTGCTCATCTTAGTTGTGACA 57.128 40.909 0.00 0.00 0.00 3.58
2109 3488 7.276438 AGTTTCTGAATTTTGTTGCTTTGTCTC 59.724 33.333 0.00 0.00 0.00 3.36
2135 3514 7.553334 TCTTTATTATAGCAAAGAGTCGTGGT 58.447 34.615 6.76 6.76 36.19 4.16
2242 3621 1.002087 CCTAAGCCAACTGAAGGTCGT 59.998 52.381 0.00 0.00 0.00 4.34
2322 3701 4.742438 TTCTTCCCTCAAATTTTCGTCG 57.258 40.909 0.00 0.00 0.00 5.12
2378 3757 2.113139 CACCCCAACGTGCCTTCT 59.887 61.111 0.00 0.00 0.00 2.85
2398 3777 5.420725 TCTGTATGTTGCTGGTTACATCT 57.579 39.130 0.00 0.00 36.46 2.90
2467 3849 0.531090 ACGCTGCACAACTCCGTTTA 60.531 50.000 0.00 0.00 0.00 2.01
2557 3939 1.629013 CTGTGCGAATCGAACTAGCA 58.371 50.000 15.44 0.00 36.21 3.49
2676 4059 2.198827 TTGTGAATGCCACCCTACAG 57.801 50.000 0.00 0.00 45.09 2.74
2678 4061 0.322456 GTGAATGCCACCCTACAGCA 60.322 55.000 0.00 0.00 39.86 4.41
2700 4083 5.308825 CAAAAAGAGGCTCTCCTAACTTGA 58.691 41.667 19.03 0.00 44.46 3.02
3154 4539 3.780294 TCATGTGTAAAGGATAGGGTGCT 59.220 43.478 0.00 0.00 0.00 4.40
3392 4780 2.508526 GTGTCCTGATCAAGTTTGCCT 58.491 47.619 0.00 0.00 0.00 4.75
3808 5196 1.694150 GTGCCTACAGATAGCCATGGA 59.306 52.381 18.40 0.00 0.00 3.41
3969 5358 6.994421 TCTGTAGGCCACTATATTCATTCA 57.006 37.500 5.01 0.00 0.00 2.57
4088 5479 4.220163 CCCTCGGGTAATACTCCTATGTTC 59.780 50.000 0.00 0.00 0.00 3.18
4127 5521 2.654749 TCTTTCATCGTCGATGCTGT 57.345 45.000 26.86 0.00 39.63 4.40
4286 5682 0.901124 TGCCTTGCAACAAAAGGTGT 59.099 45.000 0.00 0.00 45.14 4.16
4353 5749 5.831525 CCCTACTTTTTCTAACTGGGTTTGT 59.168 40.000 0.00 0.00 0.00 2.83
4390 5787 5.029650 TCATGCGACACTTGTACAAATTC 57.970 39.130 10.03 5.37 0.00 2.17
4391 5788 4.513318 TCATGCGACACTTGTACAAATTCA 59.487 37.500 10.03 2.96 0.00 2.57
4394 5791 3.603770 GCGACACTTGTACAAATTCATGC 59.396 43.478 10.03 6.24 0.00 4.06
4507 5904 6.742718 CCTGTTGAACGATATTTGCTTTACAG 59.257 38.462 0.00 0.00 0.00 2.74
4566 5963 7.267128 TCCTATCTTTTATTGCCTGCAAATTG 58.733 34.615 8.84 0.00 39.55 2.32
4578 5976 3.132925 CTGCAAATTGTTTGTTGGGGAG 58.867 45.455 4.56 0.00 42.56 4.30
4788 6192 1.512926 AAGTTGTAAGCGTCTGCAGG 58.487 50.000 15.13 0.00 46.23 4.85
4790 6194 1.202651 AGTTGTAAGCGTCTGCAGGTT 60.203 47.619 15.13 3.84 46.23 3.50
4846 6250 5.105957 CCTCGTGAGATATATGCAGTTAGCT 60.106 44.000 0.00 0.00 41.85 3.32
4847 6251 6.332735 TCGTGAGATATATGCAGTTAGCTT 57.667 37.500 0.00 0.00 38.89 3.74
4881 6285 6.864421 ACATAGGGACATCTCAGGATTACTA 58.136 40.000 0.00 0.00 0.00 1.82
4882 6286 7.306013 ACATAGGGACATCTCAGGATTACTAA 58.694 38.462 0.00 0.00 0.00 2.24
5006 6410 5.755861 AGTGCTTCTCTCTTTGACAACTTAC 59.244 40.000 0.00 0.00 0.00 2.34
5059 6714 6.870965 AGTCAATGCAACAGTTTTGTTTACAA 59.129 30.769 0.00 0.00 45.01 2.41
5108 6765 7.885399 AGGAAGAGTTGCATAGTGAATAAAAGT 59.115 33.333 0.00 0.00 0.00 2.66
5218 6958 9.685276 TGACTAATGTTATGAATCTGGAAACAT 57.315 29.630 0.00 0.00 41.29 2.71
5558 7299 3.114668 TGCTCGTTTACAGTTGGCTTA 57.885 42.857 0.00 0.00 0.00 3.09
5666 7407 6.640518 TGGCTTCGAATTCTGTCTAGTTAAT 58.359 36.000 0.00 0.00 0.00 1.40
5822 7563 1.681793 AGATTGGTAGACGGTGGATCG 59.318 52.381 0.00 0.00 0.00 3.69
6593 8335 3.189080 TCTTCATGTTCTCATTTGCACGG 59.811 43.478 0.00 0.00 31.15 4.94
6624 8366 9.303537 GTAGTTTTGCTGTTTATTTTGTTACCA 57.696 29.630 0.00 0.00 0.00 3.25
6968 8711 5.344743 TGAAAGTGCTCATAAGTCCTAGG 57.655 43.478 0.82 0.82 0.00 3.02
7096 8844 1.541588 GTTGGACTCCATTGGTCTTGC 59.458 52.381 1.86 0.00 31.53 4.01
7111 8859 0.396139 CTTGCCCCATGTGCTATGGT 60.396 55.000 16.14 0.00 37.48 3.55
7266 9017 6.210385 TGAGGGCTGATTATTTTGTTGCTTTA 59.790 34.615 0.00 0.00 0.00 1.85
7299 9050 7.283127 GGTAGAGTGAATTTGAGCATTCCATTA 59.717 37.037 0.00 0.00 32.86 1.90
7339 9090 1.064758 TGTGGCCTGTCATGGGATAAC 60.065 52.381 3.32 0.00 0.00 1.89
7365 9116 4.626042 CTTAGGGCATCTGTAGCTAGTTG 58.374 47.826 0.00 0.00 0.00 3.16
7382 9133 2.093658 AGTTGGTTAGGCATGTAGTCCG 60.094 50.000 0.00 0.00 0.00 4.79
7385 9136 1.202498 GGTTAGGCATGTAGTCCGTCC 60.202 57.143 0.00 0.00 0.00 4.79
7399 9150 3.818773 AGTCCGTCCAAACAAATGTAAGG 59.181 43.478 0.00 0.00 0.00 2.69
7761 9522 8.540507 AATCTTGATGAAGCTCCTAGTAACTA 57.459 34.615 0.00 0.00 0.00 2.24
7993 9754 7.068341 GTCATCTGCTATCATTTTCGACATTC 58.932 38.462 0.00 0.00 0.00 2.67
8032 9793 3.396560 AGGAACGTTACCTACTTTGTGC 58.603 45.455 6.97 0.00 35.84 4.57
8091 9853 4.521256 TGCACATTTTTAACCCTGGACTAC 59.479 41.667 0.00 0.00 0.00 2.73
8092 9854 4.379082 GCACATTTTTAACCCTGGACTACG 60.379 45.833 0.00 0.00 0.00 3.51
8096 9892 7.120138 CACATTTTTAACCCTGGACTACGTTAT 59.880 37.037 0.00 0.00 0.00 1.89
8175 9972 2.622064 AGTTTCGTTCCAAGCTGTCT 57.378 45.000 0.00 0.00 0.00 3.41
8256 10057 7.649306 AGAACAGTCTTCATGCACAAAATTAAC 59.351 33.333 0.00 0.00 0.00 2.01
8285 10086 7.276438 CAGCTGGTCAAAATAAGCCTAAAAATC 59.724 37.037 5.57 0.00 36.28 2.17
8286 10087 7.039082 AGCTGGTCAAAATAAGCCTAAAAATCA 60.039 33.333 0.00 0.00 36.28 2.57
8338 10157 9.643693 AAATGAGCTTGGATAAACAGTAAATTG 57.356 29.630 0.00 0.00 0.00 2.32
8394 10218 9.897744 GAACTTTGATAAAGATCACATTTGTCA 57.102 29.630 8.18 0.00 41.92 3.58
8395 10219 9.903682 AACTTTGATAAAGATCACATTTGTCAG 57.096 29.630 8.18 0.00 41.92 3.51
8396 10220 8.517878 ACTTTGATAAAGATCACATTTGTCAGG 58.482 33.333 8.18 2.03 41.92 3.86
8397 10221 6.441093 TGATAAAGATCACATTTGTCAGGC 57.559 37.500 0.00 0.00 37.15 4.85
8401 10225 1.131126 GATCACATTTGTCAGGCGTGG 59.869 52.381 6.56 0.00 0.00 4.94
8402 10226 1.081242 CACATTTGTCAGGCGTGGC 60.081 57.895 3.56 3.56 0.00 5.01
8403 10227 1.528076 ACATTTGTCAGGCGTGGCA 60.528 52.632 10.09 10.09 36.14 4.92
8438 10263 6.890558 AGACAAAATATGTGTTGCAAAATGC 58.109 32.000 0.00 0.00 44.12 3.56
8439 10264 6.707161 AGACAAAATATGTGTTGCAAAATGCT 59.293 30.769 0.00 0.00 43.13 3.79
8441 10266 7.705214 ACAAAATATGTGTTGCAAAATGCTTT 58.295 26.923 0.00 0.00 42.13 3.51
8442 10267 8.189460 ACAAAATATGTGTTGCAAAATGCTTTT 58.811 25.926 0.00 1.14 42.13 2.27
8478 10306 7.899974 TCAATTTTGTTTTATTGGTCACAACG 58.100 30.769 0.00 0.00 39.87 4.10
8530 10358 4.858935 TGCAAGCACTTAGAACATTTGTC 58.141 39.130 0.00 0.00 0.00 3.18
8535 10363 5.057149 AGCACTTAGAACATTTGTCGAAGT 58.943 37.500 0.00 0.00 0.00 3.01
8536 10364 5.527582 AGCACTTAGAACATTTGTCGAAGTT 59.472 36.000 0.00 0.00 0.00 2.66
8537 10365 5.846473 GCACTTAGAACATTTGTCGAAGTTC 59.154 40.000 0.00 0.00 40.37 3.01
8538 10366 6.511121 GCACTTAGAACATTTGTCGAAGTTCA 60.511 38.462 3.32 0.00 42.01 3.18
8545 10373 5.715070 ACATTTGTCGAAGTTCACCAAAAA 58.285 33.333 16.42 3.63 0.00 1.94
8558 10386 9.500785 AAGTTCACCAAAAAGAAAAATTCAGAA 57.499 25.926 0.00 0.00 0.00 3.02
8607 10435 6.647334 TGGTTTTATTGTTCATCAAGCTCA 57.353 33.333 0.00 0.00 39.55 4.26
8608 10436 7.230849 TGGTTTTATTGTTCATCAAGCTCAT 57.769 32.000 0.00 0.00 39.55 2.90
8609 10437 7.669427 TGGTTTTATTGTTCATCAAGCTCATT 58.331 30.769 0.00 0.00 39.55 2.57
8610 10438 8.149647 TGGTTTTATTGTTCATCAAGCTCATTT 58.850 29.630 0.00 0.00 39.55 2.32
8611 10439 8.437742 GGTTTTATTGTTCATCAAGCTCATTTG 58.562 33.333 0.00 0.00 39.55 2.32
8612 10440 9.195411 GTTTTATTGTTCATCAAGCTCATTTGA 57.805 29.630 0.00 0.00 41.00 2.69
8613 10441 8.975410 TTTATTGTTCATCAAGCTCATTTGAG 57.025 30.769 3.13 3.13 40.16 3.02
8637 10465 0.818296 AGCTCAGATACTCGGCGTTT 59.182 50.000 6.85 0.00 0.00 3.60
8640 10468 2.722071 CTCAGATACTCGGCGTTTCTC 58.278 52.381 6.85 0.33 32.52 2.87
8661 10489 5.353400 TCTCTAAATCTTGCATGCAGTGAAG 59.647 40.000 21.50 15.37 0.00 3.02
8695 10523 4.398988 GGTGCCACATAATCAGAATTGTCA 59.601 41.667 0.00 0.00 0.00 3.58
8696 10524 5.449588 GGTGCCACATAATCAGAATTGTCAG 60.450 44.000 0.00 0.00 0.00 3.51
8697 10525 5.124457 GTGCCACATAATCAGAATTGTCAGT 59.876 40.000 0.00 0.00 0.00 3.41
8698 10526 5.711506 TGCCACATAATCAGAATTGTCAGTT 59.288 36.000 0.00 0.00 0.00 3.16
8699 10527 6.032094 GCCACATAATCAGAATTGTCAGTTG 58.968 40.000 0.00 0.00 0.00 3.16
8700 10528 6.127925 GCCACATAATCAGAATTGTCAGTTGA 60.128 38.462 0.00 0.00 0.00 3.18
8707 10535 8.991783 AATCAGAATTGTCAGTTGATATGGAT 57.008 30.769 0.00 0.00 0.00 3.41
8712 10540 9.499479 AGAATTGTCAGTTGATATGGATGATAC 57.501 33.333 0.00 0.00 0.00 2.24
8756 10584 4.819105 TGGTACACTTGATAGGAGTTGG 57.181 45.455 0.00 0.00 0.00 3.77
8757 10585 4.164981 TGGTACACTTGATAGGAGTTGGT 58.835 43.478 0.00 0.00 0.00 3.67
8758 10586 4.595781 TGGTACACTTGATAGGAGTTGGTT 59.404 41.667 0.00 0.00 0.00 3.67
8759 10587 4.935808 GGTACACTTGATAGGAGTTGGTTG 59.064 45.833 0.00 0.00 0.00 3.77
8760 10588 4.974645 ACACTTGATAGGAGTTGGTTGA 57.025 40.909 0.00 0.00 0.00 3.18
8761 10589 4.899502 ACACTTGATAGGAGTTGGTTGAG 58.100 43.478 0.00 0.00 0.00 3.02
8762 10590 4.256920 CACTTGATAGGAGTTGGTTGAGG 58.743 47.826 0.00 0.00 0.00 3.86
8763 10591 3.264450 ACTTGATAGGAGTTGGTTGAGGG 59.736 47.826 0.00 0.00 0.00 4.30
8764 10592 2.196595 TGATAGGAGTTGGTTGAGGGG 58.803 52.381 0.00 0.00 0.00 4.79
8765 10593 0.919710 ATAGGAGTTGGTTGAGGGGC 59.080 55.000 0.00 0.00 0.00 5.80
8766 10594 0.474854 TAGGAGTTGGTTGAGGGGCA 60.475 55.000 0.00 0.00 0.00 5.36
8767 10595 1.152830 GGAGTTGGTTGAGGGGCAA 59.847 57.895 0.00 0.00 0.00 4.52
8779 10607 0.112995 AGGGGCAACTTCATGCTTGA 59.887 50.000 0.00 0.00 45.68 3.02
8789 10617 4.521146 ACTTCATGCTTGATAGGAGTTGG 58.479 43.478 2.75 0.00 0.00 3.77
8795 10623 3.274288 GCTTGATAGGAGTTGGTTGAGG 58.726 50.000 0.00 0.00 0.00 3.86
8807 10635 0.681243 GGTTGAGGGGCCACTTCATC 60.681 60.000 10.15 7.92 0.00 2.92
8808 10636 0.038166 GTTGAGGGGCCACTTCATCA 59.962 55.000 10.15 0.00 0.00 3.07
8809 10637 0.776810 TTGAGGGGCCACTTCATCAA 59.223 50.000 10.15 6.04 0.00 2.57
8810 10638 0.776810 TGAGGGGCCACTTCATCAAA 59.223 50.000 10.15 0.00 0.00 2.69
8811 10639 1.146774 TGAGGGGCCACTTCATCAAAA 59.853 47.619 10.15 0.00 0.00 2.44
8812 10640 2.225343 TGAGGGGCCACTTCATCAAAAT 60.225 45.455 10.15 0.00 0.00 1.82
8813 10641 2.833943 GAGGGGCCACTTCATCAAAATT 59.166 45.455 10.15 0.00 0.00 1.82
8814 10642 2.568509 AGGGGCCACTTCATCAAAATTG 59.431 45.455 0.00 0.00 0.00 2.32
8815 10643 2.302733 GGGGCCACTTCATCAAAATTGT 59.697 45.455 4.39 0.00 0.00 2.71
8816 10644 3.588955 GGGCCACTTCATCAAAATTGTC 58.411 45.455 4.39 0.00 0.00 3.18
8817 10645 3.259123 GGGCCACTTCATCAAAATTGTCT 59.741 43.478 4.39 0.00 0.00 3.41
8818 10646 4.462483 GGGCCACTTCATCAAAATTGTCTA 59.538 41.667 4.39 0.00 0.00 2.59
8819 10647 5.393461 GGGCCACTTCATCAAAATTGTCTAG 60.393 44.000 4.39 0.00 0.00 2.43
8820 10648 5.183904 GGCCACTTCATCAAAATTGTCTAGT 59.816 40.000 0.00 0.00 0.00 2.57
8821 10649 6.294731 GGCCACTTCATCAAAATTGTCTAGTT 60.295 38.462 0.00 0.00 0.00 2.24
8822 10650 6.583806 GCCACTTCATCAAAATTGTCTAGTTG 59.416 38.462 0.00 0.00 0.00 3.16
8823 10651 7.522073 GCCACTTCATCAAAATTGTCTAGTTGA 60.522 37.037 0.00 0.00 34.68 3.18
8824 10652 7.805071 CCACTTCATCAAAATTGTCTAGTTGAC 59.195 37.037 0.00 0.00 45.54 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.756561 TCGTCGCCATCATCCTGGA 60.757 57.895 0.00 0.00 38.69 3.86
7 8 1.592669 GTCGTCGCCATCATCCTGG 60.593 63.158 0.00 0.00 39.45 4.45
8 9 0.249615 ATGTCGTCGCCATCATCCTG 60.250 55.000 0.00 0.00 0.00 3.86
231 247 4.415150 CCGCACCACCATGCCTCT 62.415 66.667 0.00 0.00 42.99 3.69
274 293 0.952497 ATCTGTCGTTGCAGCACCTG 60.952 55.000 0.00 0.00 36.49 4.00
318 337 4.062293 CCTCCACTCGTATCAAAACAACA 58.938 43.478 0.00 0.00 0.00 3.33
321 340 2.695359 GCCTCCACTCGTATCAAAACA 58.305 47.619 0.00 0.00 0.00 2.83
328 347 0.669077 GATGTCGCCTCCACTCGTAT 59.331 55.000 0.00 0.00 0.00 3.06
357 376 3.822192 CATCCACGTCCTCGCCGA 61.822 66.667 0.00 0.00 41.18 5.54
369 388 3.780173 TGGTCGCCATCGCATCCA 61.780 61.111 0.00 0.00 35.26 3.41
395 414 1.307517 TTCCATAGGACGCCCCCTT 60.308 57.895 0.00 0.00 37.74 3.95
447 468 1.587613 TTTTTCACGTTGCGCTGCC 60.588 52.632 9.73 0.00 0.00 4.85
449 470 1.528248 CGGTTTTTCACGTTGCGCTG 61.528 55.000 9.73 0.00 0.00 5.18
450 471 1.298041 CGGTTTTTCACGTTGCGCT 60.298 52.632 9.73 0.00 0.00 5.92
451 472 2.290082 CCGGTTTTTCACGTTGCGC 61.290 57.895 0.00 0.00 0.00 6.09
452 473 2.290082 GCCGGTTTTTCACGTTGCG 61.290 57.895 1.90 0.00 0.00 4.85
455 491 1.644913 CTCGCCGGTTTTTCACGTT 59.355 52.632 1.90 0.00 0.00 3.99
461 497 3.670377 GCCAGCTCGCCGGTTTTT 61.670 61.111 1.90 0.00 0.00 1.94
482 518 1.910671 AGCCCCGTGTTCCTAAATACA 59.089 47.619 0.00 0.00 0.00 2.29
533 573 1.822990 CCCGAACTGCTCCACTACTAA 59.177 52.381 0.00 0.00 0.00 2.24
534 574 1.005097 TCCCGAACTGCTCCACTACTA 59.995 52.381 0.00 0.00 0.00 1.82
542 582 1.446272 CCTTCGTCCCGAACTGCTC 60.446 63.158 0.00 0.00 41.05 4.26
550 590 1.794222 GCACAATTCCTTCGTCCCG 59.206 57.895 0.00 0.00 0.00 5.14
555 598 1.135315 CAGCCGCACAATTCCTTCG 59.865 57.895 0.00 0.00 0.00 3.79
600 643 3.411418 CTGACACGCGCCGGTCTAT 62.411 63.158 21.97 0.00 35.11 1.98
611 654 2.337749 CTACCTAGGCGGCTGACACG 62.338 65.000 23.55 6.41 35.61 4.49
612 655 1.035932 TCTACCTAGGCGGCTGACAC 61.036 60.000 23.55 0.00 35.61 3.67
613 656 0.106167 ATCTACCTAGGCGGCTGACA 60.106 55.000 23.55 0.00 35.61 3.58
614 657 1.813786 CTATCTACCTAGGCGGCTGAC 59.186 57.143 23.55 0.00 35.61 3.51
615 658 1.703513 TCTATCTACCTAGGCGGCTGA 59.296 52.381 23.55 10.30 35.61 4.26
616 659 2.201921 TCTATCTACCTAGGCGGCTG 57.798 55.000 23.55 8.43 35.61 4.85
617 660 3.524380 ACTATCTATCTACCTAGGCGGCT 59.476 47.826 18.33 18.33 35.61 5.52
618 661 3.888583 ACTATCTATCTACCTAGGCGGC 58.111 50.000 9.30 0.00 35.61 6.53
619 662 6.482898 TCTACTATCTATCTACCTAGGCGG 57.517 45.833 9.30 1.50 39.35 6.13
620 663 7.728148 TCATCTACTATCTATCTACCTAGGCG 58.272 42.308 9.30 0.00 0.00 5.52
621 664 9.502091 CATCATCTACTATCTATCTACCTAGGC 57.498 40.741 9.30 0.00 0.00 3.93
669 723 3.285484 CCGGTAGCAGAGTAAACTCCTA 58.715 50.000 6.50 0.09 43.88 2.94
823 1872 1.205460 ATAAACGGGGCAGGGTGAGT 61.205 55.000 0.00 0.00 0.00 3.41
852 1901 2.978824 GCAAGAGGTGCGTAGGGA 59.021 61.111 0.00 0.00 45.10 4.20
943 1995 3.839432 CGGGGCTTCGAGGAGGTC 61.839 72.222 0.00 0.00 0.00 3.85
947 1999 1.828660 GAGATCGGGGCTTCGAGGA 60.829 63.158 0.00 0.00 42.69 3.71
972 2028 1.379176 TCTGGCACGGAGAGGAGAG 60.379 63.158 0.00 0.00 39.80 3.20
1010 2378 2.247437 GGCGGCGATTGAGTCCATC 61.247 63.158 12.98 0.00 0.00 3.51
1175 2543 1.944234 TTGCAGTATCCGAGAGCGCA 61.944 55.000 11.47 0.00 35.83 6.09
1188 2556 3.005554 CACTTCCAGAATCGATTGCAGT 58.994 45.455 16.96 4.42 0.00 4.40
1190 2558 1.739466 GCACTTCCAGAATCGATTGCA 59.261 47.619 16.96 0.00 0.00 4.08
1376 2744 8.438676 ACTTAGATGTGCAATACTTATGGAAC 57.561 34.615 0.00 0.00 0.00 3.62
1377 2745 7.715249 GGACTTAGATGTGCAATACTTATGGAA 59.285 37.037 0.00 0.00 0.00 3.53
1378 2746 7.071196 AGGACTTAGATGTGCAATACTTATGGA 59.929 37.037 0.00 0.00 0.00 3.41
1379 2747 7.220030 AGGACTTAGATGTGCAATACTTATGG 58.780 38.462 0.00 0.00 0.00 2.74
1380 2748 9.935241 ATAGGACTTAGATGTGCAATACTTATG 57.065 33.333 0.00 0.00 0.00 1.90
1381 2749 9.935241 CATAGGACTTAGATGTGCAATACTTAT 57.065 33.333 0.00 0.00 0.00 1.73
1382 2750 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
1383 2751 7.712639 CACATAGGACTTAGATGTGCAATACTT 59.287 37.037 1.64 0.00 42.75 2.24
1384 2752 7.069950 TCACATAGGACTTAGATGTGCAATACT 59.930 37.037 8.93 0.00 46.53 2.12
1385 2753 7.210174 TCACATAGGACTTAGATGTGCAATAC 58.790 38.462 8.93 0.00 46.53 1.89
1386 2754 7.360113 TCACATAGGACTTAGATGTGCAATA 57.640 36.000 8.93 0.00 46.53 1.90
1387 2755 6.239217 TCACATAGGACTTAGATGTGCAAT 57.761 37.500 8.93 0.00 46.53 3.56
1388 2756 5.675684 TCACATAGGACTTAGATGTGCAA 57.324 39.130 8.93 0.00 46.53 4.08
1389 2757 5.876651 ATCACATAGGACTTAGATGTGCA 57.123 39.130 8.93 0.00 46.53 4.57
1390 2758 6.283694 TCAATCACATAGGACTTAGATGTGC 58.716 40.000 8.93 0.00 46.53 4.57
1392 2760 8.489676 AGATCAATCACATAGGACTTAGATGT 57.510 34.615 0.00 0.00 34.11 3.06
1395 2763 8.568794 CGTAAGATCAATCACATAGGACTTAGA 58.431 37.037 0.00 0.00 43.02 2.10
1396 2764 8.353684 ACGTAAGATCAATCACATAGGACTTAG 58.646 37.037 0.00 0.00 43.62 2.18
1397 2765 8.234136 ACGTAAGATCAATCACATAGGACTTA 57.766 34.615 0.00 0.00 43.62 2.24
1398 2766 7.113658 ACGTAAGATCAATCACATAGGACTT 57.886 36.000 0.00 0.00 43.62 3.01
1399 2767 6.716934 ACGTAAGATCAATCACATAGGACT 57.283 37.500 0.00 0.00 43.62 3.85
1400 2768 6.978659 TCAACGTAAGATCAATCACATAGGAC 59.021 38.462 0.00 0.00 43.62 3.85
1401 2769 7.068226 TCTCAACGTAAGATCAATCACATAGGA 59.932 37.037 0.00 0.00 43.62 2.94
1402 2770 7.203218 TCTCAACGTAAGATCAATCACATAGG 58.797 38.462 0.00 0.00 43.62 2.57
1403 2771 8.809159 ATCTCAACGTAAGATCAATCACATAG 57.191 34.615 7.39 0.00 43.62 2.23
1404 2772 9.249457 GAATCTCAACGTAAGATCAATCACATA 57.751 33.333 12.34 0.00 43.62 2.29
1405 2773 7.043125 CGAATCTCAACGTAAGATCAATCACAT 60.043 37.037 12.34 0.00 43.62 3.21
1406 2774 6.253512 CGAATCTCAACGTAAGATCAATCACA 59.746 38.462 12.34 0.00 43.62 3.58
1407 2775 6.253727 ACGAATCTCAACGTAAGATCAATCAC 59.746 38.462 12.34 2.89 40.92 3.06
1408 2776 6.253512 CACGAATCTCAACGTAAGATCAATCA 59.746 38.462 12.34 0.00 40.76 2.57
1409 2777 6.253727 ACACGAATCTCAACGTAAGATCAATC 59.746 38.462 12.34 7.18 40.76 2.67
1410 2778 6.035005 CACACGAATCTCAACGTAAGATCAAT 59.965 38.462 12.34 0.02 40.76 2.57
1411 2779 5.344933 CACACGAATCTCAACGTAAGATCAA 59.655 40.000 12.34 0.00 40.76 2.57
1412 2780 4.857037 CACACGAATCTCAACGTAAGATCA 59.143 41.667 12.34 0.00 40.76 2.92
1413 2781 4.265556 CCACACGAATCTCAACGTAAGATC 59.734 45.833 12.34 6.90 40.76 2.75
1414 2782 4.082408 TCCACACGAATCTCAACGTAAGAT 60.082 41.667 7.39 7.39 40.76 2.40
1415 2783 3.253921 TCCACACGAATCTCAACGTAAGA 59.746 43.478 3.32 3.32 40.76 2.10
1416 2784 3.571571 TCCACACGAATCTCAACGTAAG 58.428 45.455 0.00 0.00 40.76 2.34
1417 2785 3.646611 TCCACACGAATCTCAACGTAA 57.353 42.857 0.00 0.00 40.76 3.18
1418 2786 3.861276 ATCCACACGAATCTCAACGTA 57.139 42.857 0.00 0.00 40.76 3.57
1419 2787 2.743636 ATCCACACGAATCTCAACGT 57.256 45.000 0.00 0.00 43.50 3.99
1420 2788 5.718649 AAATATCCACACGAATCTCAACG 57.281 39.130 0.00 0.00 0.00 4.10
1443 2811 7.610865 TCAAGCAGAAAGAGAAAAAGGAAAAA 58.389 30.769 0.00 0.00 0.00 1.94
1444 2812 7.169158 TCAAGCAGAAAGAGAAAAAGGAAAA 57.831 32.000 0.00 0.00 0.00 2.29
1445 2813 6.773976 TCAAGCAGAAAGAGAAAAAGGAAA 57.226 33.333 0.00 0.00 0.00 3.13
1446 2814 6.966534 ATCAAGCAGAAAGAGAAAAAGGAA 57.033 33.333 0.00 0.00 0.00 3.36
1447 2815 6.547141 TGAATCAAGCAGAAAGAGAAAAAGGA 59.453 34.615 0.00 0.00 0.00 3.36
1448 2816 6.640092 GTGAATCAAGCAGAAAGAGAAAAAGG 59.360 38.462 0.00 0.00 0.00 3.11
1449 2817 7.424001 AGTGAATCAAGCAGAAAGAGAAAAAG 58.576 34.615 0.00 0.00 0.00 2.27
1450 2818 7.067372 TGAGTGAATCAAGCAGAAAGAGAAAAA 59.933 33.333 0.00 0.00 34.02 1.94
1451 2819 6.543465 TGAGTGAATCAAGCAGAAAGAGAAAA 59.457 34.615 0.00 0.00 34.02 2.29
1452 2820 6.017605 GTGAGTGAATCAAGCAGAAAGAGAAA 60.018 38.462 0.00 0.00 40.43 2.52
1453 2821 5.468072 GTGAGTGAATCAAGCAGAAAGAGAA 59.532 40.000 0.00 0.00 40.43 2.87
1454 2822 4.993584 GTGAGTGAATCAAGCAGAAAGAGA 59.006 41.667 0.00 0.00 40.43 3.10
1455 2823 4.996122 AGTGAGTGAATCAAGCAGAAAGAG 59.004 41.667 0.00 0.00 40.43 2.85
1456 2824 4.965814 AGTGAGTGAATCAAGCAGAAAGA 58.034 39.130 0.00 0.00 40.43 2.52
1457 2825 5.686159 AAGTGAGTGAATCAAGCAGAAAG 57.314 39.130 0.00 0.00 40.43 2.62
1458 2826 6.524734 TCTAAGTGAGTGAATCAAGCAGAAA 58.475 36.000 0.00 0.00 40.43 2.52
1459 2827 6.101650 TCTAAGTGAGTGAATCAAGCAGAA 57.898 37.500 0.00 0.00 40.43 3.02
1460 2828 5.728637 TCTAAGTGAGTGAATCAAGCAGA 57.271 39.130 0.00 0.00 40.43 4.26
1461 2829 5.873712 ACATCTAAGTGAGTGAATCAAGCAG 59.126 40.000 0.00 0.00 40.43 4.24
1462 2830 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
1463 2831 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
1464 2832 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
1465 2833 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
1466 2834 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
1467 2835 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
1468 2836 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
1469 2837 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
1470 2838 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
1471 2839 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
1472 2840 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
1473 2841 8.194104 ACTCTAGTTATTGCACATCTAAGTGAG 58.806 37.037 0.00 0.00 42.05 3.51
1474 2842 8.067751 ACTCTAGTTATTGCACATCTAAGTGA 57.932 34.615 0.00 0.00 42.05 3.41
1475 2843 8.709386 AACTCTAGTTATTGCACATCTAAGTG 57.291 34.615 0.00 0.00 38.29 3.16
1476 2844 9.726438 AAAACTCTAGTTATTGCACATCTAAGT 57.274 29.630 0.00 0.00 37.25 2.24
1478 2846 9.944376 AGAAAACTCTAGTTATTGCACATCTAA 57.056 29.630 0.00 0.00 37.25 2.10
1479 2847 9.944376 AAGAAAACTCTAGTTATTGCACATCTA 57.056 29.630 0.00 0.00 37.25 1.98
1480 2848 8.854614 AAGAAAACTCTAGTTATTGCACATCT 57.145 30.769 0.00 0.00 37.25 2.90
1481 2849 9.548208 GAAAGAAAACTCTAGTTATTGCACATC 57.452 33.333 0.00 0.00 37.25 3.06
1482 2850 8.515414 GGAAAGAAAACTCTAGTTATTGCACAT 58.485 33.333 0.00 0.00 37.25 3.21
1483 2851 7.307751 CGGAAAGAAAACTCTAGTTATTGCACA 60.308 37.037 0.00 0.00 37.25 4.57
1484 2852 7.015877 CGGAAAGAAAACTCTAGTTATTGCAC 58.984 38.462 0.00 0.00 37.25 4.57
1485 2853 6.932400 TCGGAAAGAAAACTCTAGTTATTGCA 59.068 34.615 0.00 0.00 37.25 4.08
1486 2854 7.235080 GTCGGAAAGAAAACTCTAGTTATTGC 58.765 38.462 0.00 0.00 37.25 3.56
1487 2855 7.115947 ACGTCGGAAAGAAAACTCTAGTTATTG 59.884 37.037 0.00 0.00 37.25 1.90
1488 2856 7.150640 ACGTCGGAAAGAAAACTCTAGTTATT 58.849 34.615 0.00 0.00 37.25 1.40
1489 2857 6.685657 ACGTCGGAAAGAAAACTCTAGTTAT 58.314 36.000 0.00 0.00 37.25 1.89
1490 2858 6.076981 ACGTCGGAAAGAAAACTCTAGTTA 57.923 37.500 0.00 0.00 37.25 2.24
1491 2859 4.941657 ACGTCGGAAAGAAAACTCTAGTT 58.058 39.130 0.00 0.00 40.50 2.24
1492 2860 4.581077 ACGTCGGAAAGAAAACTCTAGT 57.419 40.909 0.00 0.00 0.00 2.57
1493 2861 5.902051 AAACGTCGGAAAGAAAACTCTAG 57.098 39.130 0.00 0.00 0.00 2.43
1494 2862 5.922544 CCTAAACGTCGGAAAGAAAACTCTA 59.077 40.000 0.00 0.00 0.00 2.43
1495 2863 4.748600 CCTAAACGTCGGAAAGAAAACTCT 59.251 41.667 0.00 0.00 0.00 3.24
1601 2973 4.527944 GAAGGAATGGAGGAACCTAAAGG 58.472 47.826 0.00 0.00 39.86 3.11
1615 2987 4.406069 CAATTACTGTGCACGAAGGAATG 58.594 43.478 13.80 6.38 27.14 2.67
1623 2995 1.135972 GCAGACCAATTACTGTGCACG 60.136 52.381 13.13 9.67 36.62 5.34
1640 3012 6.519382 TCATCTCAGACAATAATAGTGGCAG 58.481 40.000 0.00 0.00 0.00 4.85
2078 3457 8.496707 AAGCAACAAAATTCAGAAACTCATTT 57.503 26.923 0.00 0.00 0.00 2.32
2131 3510 3.447742 CAAGAAGCTTTCACCAAACCAC 58.552 45.455 0.00 0.00 0.00 4.16
2135 3514 2.387757 AGGCAAGAAGCTTTCACCAAA 58.612 42.857 0.00 0.00 44.79 3.28
2219 3598 3.306502 CGACCTTCAGTTGGCTTAGGTAA 60.307 47.826 0.00 0.00 37.33 2.85
2242 3621 8.736097 TTAGGTATAGATATTGGCTTCCTTGA 57.264 34.615 0.00 0.00 0.00 3.02
2282 3661 7.293828 GGAAGAAAGAATCCTCCCTTCAATAT 58.706 38.462 0.00 0.00 33.15 1.28
2283 3662 6.663734 GGAAGAAAGAATCCTCCCTTCAATA 58.336 40.000 0.00 0.00 33.15 1.90
2284 3663 5.514169 GGAAGAAAGAATCCTCCCTTCAAT 58.486 41.667 0.00 0.00 33.15 2.57
2378 3757 3.689161 GCAGATGTAACCAGCAACATACA 59.311 43.478 0.00 0.00 36.48 2.29
2398 3777 1.304052 AAGCAGGCCCATTAACGCA 60.304 52.632 0.00 0.00 0.00 5.24
2467 3849 2.283460 GCCTGGGGAAAGCTGCTT 60.283 61.111 9.53 9.53 0.00 3.91
2543 3925 1.927174 CCAGGTTGCTAGTTCGATTCG 59.073 52.381 0.00 0.00 0.00 3.34
2676 4059 3.680490 AGTTAGGAGAGCCTCTTTTTGC 58.320 45.455 0.00 0.00 45.54 3.68
2678 4061 5.568620 TCAAGTTAGGAGAGCCTCTTTTT 57.431 39.130 0.00 0.00 45.54 1.94
2700 4083 0.458669 GCAGTTAAGCATGGCAGCAT 59.541 50.000 10.71 2.60 36.85 3.79
2858 4241 4.153655 CAGGTGATGTTTCTCTGACACATG 59.846 45.833 4.37 0.00 33.80 3.21
2889 4272 0.900182 GGGGGAAGCCTGTTTCAAGG 60.900 60.000 0.00 0.00 40.63 3.61
3135 4520 3.453353 GGTAGCACCCTATCCTTTACACA 59.547 47.826 0.00 0.00 30.04 3.72
3154 4539 2.118732 TGTGGGGCAGTCTCGGTA 59.881 61.111 0.00 0.00 0.00 4.02
3268 4654 3.107642 ACACAGAGGTAACAAACTCCG 57.892 47.619 0.00 0.00 41.41 4.63
3754 5142 1.572415 AGGCATTGATCCTTCCCACAT 59.428 47.619 0.00 0.00 0.00 3.21
3808 5196 3.595173 GTTTGTTCCACAGTTTGCCTTT 58.405 40.909 0.00 0.00 0.00 3.11
3885 5274 6.319658 ACAAAAAGATCACAAAGAGCAGAGAA 59.680 34.615 0.00 0.00 34.30 2.87
3969 5358 6.532988 AATAGCTAGAAACTTCTTCTCGGT 57.467 37.500 0.00 0.00 38.70 4.69
4083 5474 3.297134 AACAAGGGTGTGAGTGAACAT 57.703 42.857 0.00 0.00 38.27 2.71
4088 5479 3.885297 AGAATGAAACAAGGGTGTGAGTG 59.115 43.478 0.00 0.00 38.27 3.51
4211 5605 6.494842 TGCAGACAAAAAGTATCAGTGAAAC 58.505 36.000 0.00 0.00 0.00 2.78
4390 5787 6.261603 ACAACCACTATGATATTGTGAGCATG 59.738 38.462 5.23 0.00 38.08 4.06
4391 5788 6.359804 ACAACCACTATGATATTGTGAGCAT 58.640 36.000 5.23 0.00 38.08 3.79
4394 5791 6.968904 GCAAACAACCACTATGATATTGTGAG 59.031 38.462 5.23 0.00 38.08 3.51
4549 5946 6.459298 CCAACAAACAATTTGCAGGCAATAAA 60.459 34.615 7.62 0.00 44.39 1.40
4566 5963 1.111277 ACACAAGCTCCCCAACAAAC 58.889 50.000 0.00 0.00 0.00 2.93
4788 6192 4.854399 TGATGTTCGACAATGTTTCCAAC 58.146 39.130 0.00 0.00 0.00 3.77
4790 6194 5.506686 TTTGATGTTCGACAATGTTTCCA 57.493 34.783 0.00 0.00 0.00 3.53
5006 6410 8.511604 ACTCCAGTTGACCATATTTAATGAAG 57.488 34.615 0.00 0.00 0.00 3.02
5027 6431 2.880890 ACTGTTGCATTGACTGAACTCC 59.119 45.455 0.00 0.00 0.00 3.85
5028 6432 4.558538 AACTGTTGCATTGACTGAACTC 57.441 40.909 0.00 0.00 0.00 3.01
5059 6714 7.933577 TCCTTTATCTCGCACAAATCTATGATT 59.066 33.333 0.00 0.00 0.00 2.57
5108 6765 1.455822 ATCTTCAACAAGGACCCCCA 58.544 50.000 0.00 0.00 33.88 4.96
5218 6958 8.374743 AGAAAAATAAAATAGAAGGCAAAGGCA 58.625 29.630 0.00 0.00 43.71 4.75
5558 7299 9.753674 TCATAAAAGGAGTTCCAAATCTTACAT 57.246 29.630 0.28 0.00 38.89 2.29
5743 7484 9.472361 TCGAACCTTTAGCTTCACATATATAAC 57.528 33.333 0.00 0.00 0.00 1.89
5745 7486 8.635328 TGTCGAACCTTTAGCTTCACATATATA 58.365 33.333 0.00 0.00 0.00 0.86
5746 7487 7.438459 GTGTCGAACCTTTAGCTTCACATATAT 59.562 37.037 0.00 0.00 0.00 0.86
5822 7563 6.035975 ACAGCAAAAACAGCAAACAATAACTC 59.964 34.615 0.00 0.00 0.00 3.01
6593 8335 7.704899 ACAAAATAAACAGCAAAACTACACTCC 59.295 33.333 0.00 0.00 0.00 3.85
6968 8711 8.433893 GTCGTTACTTGAGATTTACTTCTTTCC 58.566 37.037 0.00 0.00 0.00 3.13
7125 8873 2.955614 ACCGTTTCGTAAGGACATGAG 58.044 47.619 0.00 0.00 38.47 2.90
7266 9017 5.703130 GCTCAAATTCACTCTACCAACTTCT 59.297 40.000 0.00 0.00 0.00 2.85
7299 9050 6.570378 GCCACACTTGTTATAGCTTTCACAAT 60.570 38.462 4.67 0.00 0.00 2.71
7339 9090 2.158842 AGCTACAGATGCCCTAAGCTTG 60.159 50.000 9.86 0.00 39.18 4.01
7365 9116 1.202498 GGACGGACTACATGCCTAACC 60.202 57.143 0.00 0.00 0.00 2.85
7382 9133 8.705048 TTAAAACACCTTACATTTGTTTGGAC 57.295 30.769 0.00 0.00 41.48 4.02
7399 9150 6.635030 ACTCCCTCAAGTGATTTAAAACAC 57.365 37.500 18.08 18.08 37.30 3.32
7761 9522 4.085357 TGCCTGCCGAATGATTAACTAT 57.915 40.909 0.00 0.00 0.00 2.12
7822 9583 4.507916 TCCTCCTCGGCCTCCTCG 62.508 72.222 0.00 0.00 0.00 4.63
7831 9592 3.133003 TGCCTCTTTATTCTTCCTCCTCG 59.867 47.826 0.00 0.00 0.00 4.63
7993 9754 4.301072 TCCTTCCAAATCCTGGTACAAG 57.699 45.455 0.00 0.00 46.51 3.16
8032 9793 8.827177 ATATCCATGTAACAACTAATACACGG 57.173 34.615 0.00 0.00 36.86 4.94
8091 9853 0.815734 ACGGTCCCTGACAGATAACG 59.184 55.000 3.32 8.39 33.68 3.18
8092 9854 2.100989 AGACGGTCCCTGACAGATAAC 58.899 52.381 3.32 0.00 33.68 1.89
8096 9892 0.675837 CGTAGACGGTCCCTGACAGA 60.676 60.000 3.32 0.00 33.68 3.41
8175 9972 1.001293 ACAAAGCGCTCAGACTGATCA 59.999 47.619 12.06 0.00 0.00 2.92
8285 10086 6.369065 AGCTCAAAGAGTACTTTCGGTATTTG 59.631 38.462 0.00 0.00 43.41 2.32
8286 10087 6.465084 AGCTCAAAGAGTACTTTCGGTATTT 58.535 36.000 0.00 0.00 43.41 1.40
8291 10092 3.914312 TGAGCTCAAAGAGTACTTTCGG 58.086 45.455 15.67 0.00 43.41 4.30
8292 10093 5.907197 TTTGAGCTCAAAGAGTACTTTCG 57.093 39.130 32.86 0.00 43.41 3.46
8364 10188 8.408043 AATGTGATCTTTATCAAAGTTCCACA 57.592 30.769 16.92 16.92 43.69 4.17
8366 10190 8.859090 ACAAATGTGATCTTTATCAAAGTTCCA 58.141 29.630 0.00 5.77 43.69 3.53
8367 10191 9.346725 GACAAATGTGATCTTTATCAAAGTTCC 57.653 33.333 0.00 1.75 43.69 3.62
8368 10192 9.897744 TGACAAATGTGATCTTTATCAAAGTTC 57.102 29.630 0.00 1.66 43.69 3.01
8382 10206 1.167851 CCACGCCTGACAAATGTGAT 58.832 50.000 0.00 0.00 32.39 3.06
8437 10262 7.854534 ACAAAATTGATGCTACTTTCAAAAGC 58.145 30.769 0.00 0.00 39.63 3.51
8445 10270 9.777297 ACCAATAAAACAAAATTGATGCTACTT 57.223 25.926 0.00 0.00 35.53 2.24
8446 10271 9.423061 GACCAATAAAACAAAATTGATGCTACT 57.577 29.630 0.00 0.00 35.53 2.57
8447 10272 9.202273 TGACCAATAAAACAAAATTGATGCTAC 57.798 29.630 0.00 0.00 35.53 3.58
8449 10274 7.714377 TGTGACCAATAAAACAAAATTGATGCT 59.286 29.630 0.00 0.00 35.53 3.79
8451 10276 9.649024 GTTGTGACCAATAAAACAAAATTGATG 57.351 29.630 0.00 0.00 35.53 3.07
8453 10278 7.545965 ACGTTGTGACCAATAAAACAAAATTGA 59.454 29.630 0.00 0.00 35.53 2.57
8456 10281 6.477360 GGACGTTGTGACCAATAAAACAAAAT 59.523 34.615 0.00 0.00 34.54 1.82
8457 10282 5.805994 GGACGTTGTGACCAATAAAACAAAA 59.194 36.000 0.00 0.00 34.54 2.44
8505 10333 6.980593 ACAAATGTTCTAAGTGCTTGCAATA 58.019 32.000 0.00 0.00 0.00 1.90
8506 10334 5.846203 ACAAATGTTCTAAGTGCTTGCAAT 58.154 33.333 0.00 0.00 0.00 3.56
8530 10358 7.958674 TGAATTTTTCTTTTTGGTGAACTTCG 58.041 30.769 0.00 0.00 0.00 3.79
8578 10406 8.992073 GCTTGATGAACAATAAAACCAAAAGAT 58.008 29.630 0.00 0.00 37.88 2.40
8613 10441 1.867698 GCCGAGTATCTGAGCTCAAGC 60.868 57.143 18.85 8.00 42.49 4.01
8614 10442 1.599171 CGCCGAGTATCTGAGCTCAAG 60.599 57.143 18.85 11.92 0.00 3.02
8615 10443 0.382158 CGCCGAGTATCTGAGCTCAA 59.618 55.000 18.85 9.34 0.00 3.02
8616 10444 0.748367 ACGCCGAGTATCTGAGCTCA 60.748 55.000 17.19 17.19 0.00 4.26
8617 10445 0.382515 AACGCCGAGTATCTGAGCTC 59.617 55.000 6.82 6.82 0.00 4.09
8618 10446 0.818296 AAACGCCGAGTATCTGAGCT 59.182 50.000 0.00 0.00 0.00 4.09
8619 10447 1.201343 GAAACGCCGAGTATCTGAGC 58.799 55.000 0.00 0.00 0.00 4.26
8620 10448 2.356382 AGAGAAACGCCGAGTATCTGAG 59.644 50.000 0.00 0.00 0.00 3.35
8621 10449 2.366533 AGAGAAACGCCGAGTATCTGA 58.633 47.619 0.00 0.00 0.00 3.27
8622 10450 2.853731 AGAGAAACGCCGAGTATCTG 57.146 50.000 0.00 0.00 0.00 2.90
8623 10451 4.978083 TTTAGAGAAACGCCGAGTATCT 57.022 40.909 0.00 0.00 0.00 1.98
8624 10452 5.521544 AGATTTAGAGAAACGCCGAGTATC 58.478 41.667 0.00 0.00 0.00 2.24
8625 10453 5.517322 AGATTTAGAGAAACGCCGAGTAT 57.483 39.130 0.00 0.00 0.00 2.12
8626 10454 4.978083 AGATTTAGAGAAACGCCGAGTA 57.022 40.909 0.00 0.00 0.00 2.59
8627 10455 3.870633 AGATTTAGAGAAACGCCGAGT 57.129 42.857 0.00 0.00 0.00 4.18
8628 10456 3.242123 GCAAGATTTAGAGAAACGCCGAG 60.242 47.826 0.00 0.00 0.00 4.63
8629 10457 2.671396 GCAAGATTTAGAGAAACGCCGA 59.329 45.455 0.00 0.00 0.00 5.54
8630 10458 2.415168 TGCAAGATTTAGAGAAACGCCG 59.585 45.455 0.00 0.00 0.00 6.46
8631 10459 4.346129 CATGCAAGATTTAGAGAAACGCC 58.654 43.478 0.00 0.00 0.00 5.68
8637 10465 4.835678 TCACTGCATGCAAGATTTAGAGA 58.164 39.130 22.88 9.21 0.00 3.10
8640 10468 4.103357 GCTTCACTGCATGCAAGATTTAG 58.897 43.478 22.88 16.28 0.00 1.85
8668 10496 5.999205 ATTCTGATTATGTGGCACCAAAA 57.001 34.783 16.26 7.01 0.00 2.44
8669 10497 5.245751 ACAATTCTGATTATGTGGCACCAAA 59.754 36.000 16.26 9.66 0.00 3.28
8670 10498 4.771577 ACAATTCTGATTATGTGGCACCAA 59.228 37.500 16.26 9.68 0.00 3.67
8682 10510 8.847196 CATCCATATCAACTGACAATTCTGATT 58.153 33.333 0.00 0.00 0.00 2.57
8687 10515 9.499479 AGTATCATCCATATCAACTGACAATTC 57.501 33.333 0.00 0.00 0.00 2.17
8725 10553 9.925545 TCCTATCAAGTGTACCATACTAAGTTA 57.074 33.333 0.00 0.00 0.00 2.24
8737 10565 5.790593 TCAACCAACTCCTATCAAGTGTAC 58.209 41.667 0.00 0.00 0.00 2.90
8742 10570 3.370953 CCCCTCAACCAACTCCTATCAAG 60.371 52.174 0.00 0.00 0.00 3.02
8743 10571 2.576191 CCCCTCAACCAACTCCTATCAA 59.424 50.000 0.00 0.00 0.00 2.57
8744 10572 2.196595 CCCCTCAACCAACTCCTATCA 58.803 52.381 0.00 0.00 0.00 2.15
8745 10573 1.134068 GCCCCTCAACCAACTCCTATC 60.134 57.143 0.00 0.00 0.00 2.08
8746 10574 0.919710 GCCCCTCAACCAACTCCTAT 59.080 55.000 0.00 0.00 0.00 2.57
8747 10575 0.474854 TGCCCCTCAACCAACTCCTA 60.475 55.000 0.00 0.00 0.00 2.94
8748 10576 1.360393 TTGCCCCTCAACCAACTCCT 61.360 55.000 0.00 0.00 0.00 3.69
8749 10577 1.152830 TTGCCCCTCAACCAACTCC 59.847 57.895 0.00 0.00 0.00 3.85
8750 10578 4.920828 TTGCCCCTCAACCAACTC 57.079 55.556 0.00 0.00 0.00 3.01
8757 10585 0.112995 AGCATGAAGTTGCCCCTCAA 59.887 50.000 0.00 0.00 43.83 3.02
8758 10586 0.112995 AAGCATGAAGTTGCCCCTCA 59.887 50.000 0.00 0.00 43.83 3.86
8759 10587 0.529378 CAAGCATGAAGTTGCCCCTC 59.471 55.000 0.00 0.00 43.83 4.30
8760 10588 0.112995 TCAAGCATGAAGTTGCCCCT 59.887 50.000 0.00 0.00 43.83 4.79
8761 10589 1.188863 ATCAAGCATGAAGTTGCCCC 58.811 50.000 0.00 0.00 43.83 5.80
8762 10590 2.360165 CCTATCAAGCATGAAGTTGCCC 59.640 50.000 0.00 0.00 43.83 5.36
8763 10591 3.282021 TCCTATCAAGCATGAAGTTGCC 58.718 45.455 0.00 0.00 43.83 4.52
8764 10592 3.944015 ACTCCTATCAAGCATGAAGTTGC 59.056 43.478 0.00 0.00 39.49 4.17
8765 10593 5.163683 CCAACTCCTATCAAGCATGAAGTTG 60.164 44.000 19.88 19.88 39.49 3.16
8766 10594 4.946157 CCAACTCCTATCAAGCATGAAGTT 59.054 41.667 0.00 0.00 39.49 2.66
8767 10595 4.018960 ACCAACTCCTATCAAGCATGAAGT 60.019 41.667 0.00 0.00 39.49 3.01
8768 10596 4.521146 ACCAACTCCTATCAAGCATGAAG 58.479 43.478 0.00 0.00 39.49 3.02
8769 10597 4.574674 ACCAACTCCTATCAAGCATGAA 57.425 40.909 0.00 0.00 39.49 2.57
8770 10598 4.019411 TCAACCAACTCCTATCAAGCATGA 60.019 41.667 0.00 0.00 40.57 3.07
8771 10599 4.264253 TCAACCAACTCCTATCAAGCATG 58.736 43.478 0.00 0.00 0.00 4.06
8772 10600 4.521146 CTCAACCAACTCCTATCAAGCAT 58.479 43.478 0.00 0.00 0.00 3.79
8773 10601 3.307691 CCTCAACCAACTCCTATCAAGCA 60.308 47.826 0.00 0.00 0.00 3.91
8774 10602 3.274288 CCTCAACCAACTCCTATCAAGC 58.726 50.000 0.00 0.00 0.00 4.01
8779 10607 0.919710 GCCCCTCAACCAACTCCTAT 59.080 55.000 0.00 0.00 0.00 2.57
8789 10617 0.038166 TGATGAAGTGGCCCCTCAAC 59.962 55.000 0.00 0.00 0.00 3.18
8795 10623 3.259123 AGACAATTTTGATGAAGTGGCCC 59.741 43.478 0.00 0.00 33.26 5.80



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.