Multiple sequence alignment - TraesCS4D01G163300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G163300 chr4D 100.000 8199 0 0 1 8199 255152091 255143893 0.000000e+00 15141.0
1 TraesCS4D01G163300 chr4D 93.175 967 47 7 4515 5468 39646521 39645561 0.000000e+00 1402.0
2 TraesCS4D01G163300 chr4D 87.536 690 79 5 5469 6156 346468088 346467404 0.000000e+00 791.0
3 TraesCS4D01G163300 chr4D 95.198 354 13 1 1 354 474241507 474241856 2.590000e-154 556.0
4 TraesCS4D01G163300 chr4D 98.246 228 4 0 126 353 138535038 138534811 4.610000e-107 399.0
5 TraesCS4D01G163300 chr4D 97.021 235 7 0 125 359 138502514 138502280 5.960000e-106 396.0
6 TraesCS4D01G163300 chr4D 97.414 232 6 0 126 357 417057951 417058182 5.960000e-106 396.0
7 TraesCS4D01G163300 chr4D 97.600 125 3 0 1 125 255164627 255164503 1.790000e-51 215.0
8 TraesCS4D01G163300 chr4D 97.600 125 3 0 1 125 298041330 298041206 1.790000e-51 215.0
9 TraesCS4D01G163300 chr4B 98.228 3104 51 4 1124 4226 350457987 350461087 0.000000e+00 5424.0
10 TraesCS4D01G163300 chr4B 96.156 1639 44 12 6527 8150 350462283 350463917 0.000000e+00 2660.0
11 TraesCS4D01G163300 chr4B 96.552 899 24 6 5463 6359 350461301 350462194 0.000000e+00 1482.0
12 TraesCS4D01G163300 chr4B 86.230 610 53 12 352 930 350456910 350457519 4.180000e-177 632.0
13 TraesCS4D01G163300 chr4B 91.837 294 24 0 352 645 350428360 350428653 2.130000e-110 411.0
14 TraesCS4D01G163300 chr4B 83.923 311 27 11 643 930 350455738 350456048 8.110000e-70 276.0
15 TraesCS4D01G163300 chr4B 82.692 312 31 11 642 930 350429567 350429878 1.060000e-63 255.0
16 TraesCS4D01G163300 chr4B 98.936 94 1 0 4319 4412 350461137 350461230 1.420000e-37 169.0
17 TraesCS4D01G163300 chr4B 93.407 91 6 0 4419 4509 447443925 447444015 1.440000e-27 135.0
18 TraesCS4D01G163300 chr4B 85.859 99 13 1 6615 6712 601418484 601418582 4.050000e-18 104.0
19 TraesCS4D01G163300 chr4B 98.246 57 1 0 4283 4339 350461083 350461139 5.240000e-17 100.0
20 TraesCS4D01G163300 chr4A 96.302 3137 71 11 937 4069 271805138 271802043 0.000000e+00 5108.0
21 TraesCS4D01G163300 chr4A 93.290 2787 110 34 5463 8199 271794267 271791508 0.000000e+00 4039.0
22 TraesCS4D01G163300 chr4A 96.875 96 2 1 4316 4410 271794422 271794327 8.520000e-35 159.0
23 TraesCS4D01G163300 chr4A 86.131 137 15 4 3923 4059 271797274 271797142 2.380000e-30 145.0
24 TraesCS4D01G163300 chr4A 93.478 92 6 0 4418 4509 302680188 302680097 3.990000e-28 137.0
25 TraesCS4D01G163300 chr2D 93.724 972 44 6 4515 5475 578943158 578942193 0.000000e+00 1441.0
26 TraesCS4D01G163300 chr2D 88.092 697 77 5 5463 6156 380416619 380417312 0.000000e+00 822.0
27 TraesCS4D01G163300 chr2D 85.940 697 92 5 5463 6156 388833754 388834447 0.000000e+00 739.0
28 TraesCS4D01G163300 chr2D 98.246 228 4 0 126 353 121343925 121344152 4.610000e-107 399.0
29 TraesCS4D01G163300 chr2D 92.766 235 16 1 6484 6717 255794223 255793989 1.020000e-88 339.0
30 TraesCS4D01G163300 chr2D 87.031 293 38 0 352 644 277970137 277969845 1.710000e-86 331.0
31 TraesCS4D01G163300 chr2D 93.525 139 8 1 1 139 92792650 92792787 1.080000e-48 206.0
32 TraesCS4D01G163300 chr2D 82.432 148 24 2 682 828 42882186 42882040 2.400000e-25 128.0
33 TraesCS4D01G163300 chr2D 80.537 149 22 6 682 828 558254764 558254907 3.130000e-19 108.0
34 TraesCS4D01G163300 chr3D 92.141 967 46 7 4515 5470 361752579 361751632 0.000000e+00 1338.0
35 TraesCS4D01G163300 chr3D 93.620 815 36 5 4662 5465 361751636 361750827 0.000000e+00 1203.0
36 TraesCS4D01G163300 chr3D 98.667 225 3 0 129 353 315494492 315494268 4.610000e-107 399.0
37 TraesCS4D01G163300 chr3D 96.154 130 4 1 1 130 107013479 107013607 2.320000e-50 211.0
38 TraesCS4D01G163300 chr3D 95.455 132 5 1 1 132 170753463 170753593 8.340000e-50 209.0
39 TraesCS4D01G163300 chr3D 78.061 196 36 6 7517 7709 388330143 388330334 5.200000e-22 117.0
40 TraesCS4D01G163300 chr7A 90.832 949 55 10 4517 5464 541222504 541223421 0.000000e+00 1242.0
41 TraesCS4D01G163300 chr7A 85.613 702 93 7 5463 6156 496823760 496823059 0.000000e+00 730.0
42 TraesCS4D01G163300 chr7A 86.555 119 11 5 4394 4509 554917669 554917785 8.640000e-25 126.0
43 TraesCS4D01G163300 chr1A 92.525 816 48 4 4516 5324 10425624 10426433 0.000000e+00 1157.0
44 TraesCS4D01G163300 chr1A 90.136 294 29 0 352 645 482219401 482219694 4.640000e-102 383.0
45 TraesCS4D01G163300 chr1A 97.241 145 3 1 5322 5465 10427315 10427459 2.290000e-60 244.0
46 TraesCS4D01G163300 chr1A 91.398 93 8 0 4417 4509 420384898 420384990 2.400000e-25 128.0
47 TraesCS4D01G163300 chr5D 88.798 982 51 17 4515 5470 481946201 481945253 0.000000e+00 1149.0
48 TraesCS4D01G163300 chr5D 85.714 700 92 7 5463 6158 277252121 277251426 0.000000e+00 732.0
49 TraesCS4D01G163300 chr5D 92.023 351 21 3 1 351 296599987 296599644 3.440000e-133 486.0
50 TraesCS4D01G163300 chr5D 76.309 401 53 23 7419 7796 368032440 368032821 8.460000e-40 176.0
51 TraesCS4D01G163300 chr5D 82.759 145 23 2 677 821 462278386 462278244 2.400000e-25 128.0
52 TraesCS4D01G163300 chr5B 92.919 692 27 9 4787 5469 582588153 582587475 0.000000e+00 987.0
53 TraesCS4D01G163300 chr5B 93.066 274 19 0 4518 4791 582588505 582588232 1.280000e-107 401.0
54 TraesCS4D01G163300 chr5B 80.743 296 30 19 3761 4052 49561757 49562029 1.080000e-48 206.0
55 TraesCS4D01G163300 chr5B 87.000 100 10 2 693 789 360935879 360935978 8.700000e-20 110.0
56 TraesCS4D01G163300 chr3B 90.649 663 41 8 4816 5470 114705030 114705679 0.000000e+00 861.0
57 TraesCS4D01G163300 chr3B 90.476 294 28 0 352 645 252677401 252677694 9.980000e-104 388.0
58 TraesCS4D01G163300 chr3B 90.722 291 25 1 4516 4804 114660550 114660840 3.590000e-103 387.0
59 TraesCS4D01G163300 chr3B 88.014 292 31 4 356 645 257511735 257512024 7.880000e-90 342.0
60 TraesCS4D01G163300 chr3B 80.345 290 38 11 7517 7796 699868839 699868559 1.400000e-47 202.0
61 TraesCS4D01G163300 chr3B 80.180 222 28 15 681 897 452280083 452280293 1.430000e-32 152.0
62 TraesCS4D01G163300 chr2A 88.666 697 73 5 5463 6156 515951733 515952426 0.000000e+00 845.0
63 TraesCS4D01G163300 chr2A 90.476 294 28 0 352 645 143023561 143023268 9.980000e-104 388.0
64 TraesCS4D01G163300 chr2A 91.189 227 18 1 6485 6709 356468748 356468522 2.870000e-79 307.0
65 TraesCS4D01G163300 chr2A 90.090 111 11 0 6764 6874 356468525 356468415 2.380000e-30 145.0
66 TraesCS4D01G163300 chr2A 89.720 107 11 0 3249 3355 356468852 356468746 3.990000e-28 137.0
67 TraesCS4D01G163300 chr7D 85.694 699 90 7 5463 6158 41150515 41151206 0.000000e+00 728.0
68 TraesCS4D01G163300 chr7D 97.425 233 5 1 126 357 375674407 375674175 5.960000e-106 396.0
69 TraesCS4D01G163300 chr7D 90.136 294 29 0 352 645 302553692 302553399 4.640000e-102 383.0
70 TraesCS4D01G163300 chr7D 91.489 235 18 2 6484 6717 628307642 628307875 1.030000e-83 322.0
71 TraesCS4D01G163300 chr7D 96.875 128 4 0 1 128 423965779 423965906 1.790000e-51 215.0
72 TraesCS4D01G163300 chr7D 90.132 152 13 2 1 152 266257373 266257224 6.490000e-46 196.0
73 TraesCS4D01G163300 chr7D 95.604 91 4 0 4419 4509 175941820 175941730 6.630000e-31 147.0
74 TraesCS4D01G163300 chr7D 95.918 49 2 0 6485 6533 195587144 195587192 6.820000e-11 80.5
75 TraesCS4D01G163300 chr6D 84.296 554 67 12 3766 4314 193230806 193230268 2.620000e-144 523.0
76 TraesCS4D01G163300 chr6D 99.111 225 2 0 129 353 122200068 122199844 9.910000e-109 405.0
77 TraesCS4D01G163300 chr6B 83.935 554 70 11 3766 4314 396945775 396946314 5.680000e-141 512.0
78 TraesCS4D01G163300 chr2B 89.437 284 28 2 363 645 237468384 237468102 2.810000e-94 357.0
79 TraesCS4D01G163300 chr2B 82.759 116 18 2 716 831 790307601 790307488 1.460000e-17 102.0
80 TraesCS4D01G163300 chr1D 93.377 151 10 0 4519 4669 223771723 223771873 2.980000e-54 224.0
81 TraesCS4D01G163300 chr1D 92.857 112 8 0 6764 6875 194910672 194910783 6.580000e-36 163.0
82 TraesCS4D01G163300 chr1B 93.421 152 8 2 4519 4669 323326079 323326229 2.980000e-54 224.0
83 TraesCS4D01G163300 chr1B 90.722 97 9 0 4413 4509 428109849 428109945 6.680000e-26 130.0
84 TraesCS4D01G163300 chrUn 92.308 91 7 0 4419 4509 12159875 12159785 6.680000e-26 130.0
85 TraesCS4D01G163300 chr7B 90.099 101 8 1 4411 4509 103393823 103393923 6.680000e-26 130.0
86 TraesCS4D01G163300 chr7B 89.216 102 11 0 4410 4511 491958006 491958107 2.400000e-25 128.0
87 TraesCS4D01G163300 chr7B 78.571 196 34 5 7606 7796 111205925 111205733 1.120000e-23 122.0
88 TraesCS4D01G163300 chr5A 77.711 166 28 7 7631 7792 563313491 563313651 8.760000e-15 93.5
89 TraesCS4D01G163300 chr5A 78.102 137 24 5 7631 7764 616635668 616635801 1.900000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G163300 chr4D 255143893 255152091 8198 True 15141.000000 15141 100.000000 1 8199 1 chr4D.!!$R4 8198
1 TraesCS4D01G163300 chr4D 39645561 39646521 960 True 1402.000000 1402 93.175000 4515 5468 1 chr4D.!!$R1 953
2 TraesCS4D01G163300 chr4D 346467404 346468088 684 True 791.000000 791 87.536000 5469 6156 1 chr4D.!!$R7 687
3 TraesCS4D01G163300 chr4B 350455738 350463917 8179 False 1534.714286 5424 94.038714 352 8150 7 chr4B.!!$F4 7798
4 TraesCS4D01G163300 chr4B 350428360 350429878 1518 False 333.000000 411 87.264500 352 930 2 chr4B.!!$F3 578
5 TraesCS4D01G163300 chr4A 271802043 271805138 3095 True 5108.000000 5108 96.302000 937 4069 1 chr4A.!!$R1 3132
6 TraesCS4D01G163300 chr4A 271791508 271797274 5766 True 1447.666667 4039 92.098667 3923 8199 3 chr4A.!!$R3 4276
7 TraesCS4D01G163300 chr2D 578942193 578943158 965 True 1441.000000 1441 93.724000 4515 5475 1 chr2D.!!$R4 960
8 TraesCS4D01G163300 chr2D 380416619 380417312 693 False 822.000000 822 88.092000 5463 6156 1 chr2D.!!$F3 693
9 TraesCS4D01G163300 chr2D 388833754 388834447 693 False 739.000000 739 85.940000 5463 6156 1 chr2D.!!$F4 693
10 TraesCS4D01G163300 chr3D 361750827 361752579 1752 True 1270.500000 1338 92.880500 4515 5470 2 chr3D.!!$R2 955
11 TraesCS4D01G163300 chr7A 541222504 541223421 917 False 1242.000000 1242 90.832000 4517 5464 1 chr7A.!!$F1 947
12 TraesCS4D01G163300 chr7A 496823059 496823760 701 True 730.000000 730 85.613000 5463 6156 1 chr7A.!!$R1 693
13 TraesCS4D01G163300 chr1A 10425624 10427459 1835 False 700.500000 1157 94.883000 4516 5465 2 chr1A.!!$F3 949
14 TraesCS4D01G163300 chr5D 481945253 481946201 948 True 1149.000000 1149 88.798000 4515 5470 1 chr5D.!!$R4 955
15 TraesCS4D01G163300 chr5D 277251426 277252121 695 True 732.000000 732 85.714000 5463 6158 1 chr5D.!!$R1 695
16 TraesCS4D01G163300 chr5B 582587475 582588505 1030 True 694.000000 987 92.992500 4518 5469 2 chr5B.!!$R1 951
17 TraesCS4D01G163300 chr3B 114705030 114705679 649 False 861.000000 861 90.649000 4816 5470 1 chr3B.!!$F2 654
18 TraesCS4D01G163300 chr2A 515951733 515952426 693 False 845.000000 845 88.666000 5463 6156 1 chr2A.!!$F1 693
19 TraesCS4D01G163300 chr7D 41150515 41151206 691 False 728.000000 728 85.694000 5463 6158 1 chr7D.!!$F1 695
20 TraesCS4D01G163300 chr6D 193230268 193230806 538 True 523.000000 523 84.296000 3766 4314 1 chr6D.!!$R2 548
21 TraesCS4D01G163300 chr6B 396945775 396946314 539 False 512.000000 512 83.935000 3766 4314 1 chr6B.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.034616 AGCTTCCTATCTGCGATGGC 59.965 55.000 0.00 0.00 40.52 4.40 F
114 115 0.036952 AAGGACATCTGCCGTGACAG 60.037 55.000 0.00 0.00 39.12 3.51 F
143 144 0.107017 AAGATGGGAGTGCCGGATTG 60.107 55.000 5.05 0.00 33.83 2.67 F
275 276 0.178533 AGACAAAACCCGACCACGAA 59.821 50.000 0.00 0.00 42.66 3.85 F
381 1203 0.321122 CTGGGAGGTGCAGTCTTCAC 60.321 60.000 0.00 0.00 0.00 3.18 F
477 1299 0.606604 ATGGCGTTGGTCTTCGTACT 59.393 50.000 0.00 0.00 0.00 2.73 F
704 1535 0.622136 ACCCCCGTCCTGGTTTATTC 59.378 55.000 0.00 0.00 35.15 1.75 F
1078 2015 0.952984 AGAGGAAAGCAGAAGCACGC 60.953 55.000 0.00 0.00 45.49 5.34 F
1156 2283 0.965866 TCGCACCTCATCCTTCTCGT 60.966 55.000 0.00 0.00 0.00 4.18 F
2635 3762 1.280133 CAGGCCAGTCTCATCAAAGGA 59.720 52.381 5.01 0.00 0.00 3.36 F
2744 3871 1.831652 GCCAGGTGAGTGCTGGTAGT 61.832 60.000 0.00 0.00 40.21 2.73 F
4085 5215 0.029834 CACTCACTGCACAAACAGCC 59.970 55.000 0.00 0.00 41.60 4.85 F
4174 5343 0.106217 CAGAAACCCCAACCCACTGT 60.106 55.000 0.00 0.00 0.00 3.55 F
4806 8490 0.108329 GTACATGCTAGTGGCCACGT 60.108 55.000 29.68 21.54 40.92 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1106 2043 0.110295 TGGCGGGATGGATTGTATGG 59.890 55.000 0.00 0.00 0.00 2.74 R
1781 2908 0.250234 CTGACAGCTTCCCATCCGAA 59.750 55.000 0.00 0.00 0.00 4.30 R
2590 3717 4.285517 ACTTCTCTGCATTCTTCTTCCTCA 59.714 41.667 0.00 0.00 0.00 3.86 R
2635 3762 4.650131 TCATCTCAGATTCATCAGCAGACT 59.350 41.667 0.00 0.00 0.00 3.24 R
3058 4185 2.945510 TGCTCACGCAATGTTCCAT 58.054 47.368 0.00 0.00 44.62 3.41 R
3155 4282 5.266709 AGCCATGCAAATATTCTATCCCT 57.733 39.130 0.00 0.00 0.00 4.20 R
3290 4417 5.047872 CACCCTTGTCATCATTGATTTGTCA 60.048 40.000 0.00 0.00 33.56 3.58 R
3579 4706 0.251073 TTCTAAGTGGTAAGGCGCCC 59.749 55.000 26.15 8.39 0.00 6.13 R
3725 4852 5.362430 AGTGAAAACTTATGCCCAGAACAAA 59.638 36.000 0.00 0.00 0.00 2.83 R
4085 5215 0.319555 TCGTTTCAGCTTGAGGACGG 60.320 55.000 16.21 0.00 37.90 4.79 R
4245 5414 0.399949 ACTCCCCGCCATTGAGGATA 60.400 55.000 0.00 0.00 41.22 2.59 R
5112 8801 1.146358 GAACGAGCACGGGAGCATAC 61.146 60.000 8.74 0.00 44.46 2.39 R
5270 8991 2.101082 GCATGACTCTCTCTGCTGATCA 59.899 50.000 0.00 0.00 0.00 2.92 R
7299 13240 0.040958 CTTGTGGACGCTTGCTTCAC 60.041 55.000 1.76 3.07 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.327744 AGGGGCCGAACCAGTATAA 57.672 52.632 0.00 0.00 42.05 0.98
20 21 1.211212 AGGGGCCGAACCAGTATAAAC 59.789 52.381 0.00 0.00 42.05 2.01
21 22 1.671979 GGGCCGAACCAGTATAAACC 58.328 55.000 0.00 0.00 42.05 3.27
22 23 1.671979 GGCCGAACCAGTATAAACCC 58.328 55.000 0.00 0.00 38.86 4.11
23 24 1.211212 GGCCGAACCAGTATAAACCCT 59.789 52.381 0.00 0.00 38.86 4.34
26 27 3.871074 GCCGAACCAGTATAAACCCTTGT 60.871 47.826 0.00 0.00 0.00 3.16
27 28 3.687698 CCGAACCAGTATAAACCCTTGTG 59.312 47.826 0.00 0.00 0.00 3.33
28 29 4.320870 CGAACCAGTATAAACCCTTGTGT 58.679 43.478 0.00 0.00 0.00 3.72
29 30 4.758165 CGAACCAGTATAAACCCTTGTGTT 59.242 41.667 0.00 0.00 0.00 3.32
30 31 5.106830 CGAACCAGTATAAACCCTTGTGTTC 60.107 44.000 0.00 0.00 0.00 3.18
31 32 4.659115 ACCAGTATAAACCCTTGTGTTCC 58.341 43.478 0.00 0.00 0.00 3.62
32 33 4.352893 ACCAGTATAAACCCTTGTGTTCCT 59.647 41.667 0.00 0.00 0.00 3.36
33 34 5.163023 ACCAGTATAAACCCTTGTGTTCCTT 60.163 40.000 0.00 0.00 0.00 3.36
34 35 5.183140 CCAGTATAAACCCTTGTGTTCCTTG 59.817 44.000 0.00 0.00 0.00 3.61
35 36 5.768164 CAGTATAAACCCTTGTGTTCCTTGT 59.232 40.000 0.00 0.00 0.00 3.16
36 37 6.002082 AGTATAAACCCTTGTGTTCCTTGTC 58.998 40.000 0.00 0.00 0.00 3.18
37 38 2.067365 AACCCTTGTGTTCCTTGTCC 57.933 50.000 0.00 0.00 0.00 4.02
38 39 0.185175 ACCCTTGTGTTCCTTGTCCC 59.815 55.000 0.00 0.00 0.00 4.46
40 41 1.318576 CCTTGTGTTCCTTGTCCCAC 58.681 55.000 0.00 0.00 0.00 4.61
42 43 2.586425 CTTGTGTTCCTTGTCCCACAT 58.414 47.619 0.00 0.00 37.63 3.21
45 46 4.171878 TGTGTTCCTTGTCCCACATTAA 57.828 40.909 0.00 0.00 33.19 1.40
47 48 3.254903 GTGTTCCTTGTCCCACATTAACC 59.745 47.826 0.00 0.00 0.00 2.85
48 49 2.823747 GTTCCTTGTCCCACATTAACCC 59.176 50.000 0.00 0.00 0.00 4.11
49 50 1.356398 TCCTTGTCCCACATTAACCCC 59.644 52.381 0.00 0.00 0.00 4.95
50 51 1.357761 CCTTGTCCCACATTAACCCCT 59.642 52.381 0.00 0.00 0.00 4.79
53 54 2.066592 TGTCCCACATTAACCCCTTCA 58.933 47.619 0.00 0.00 0.00 3.02
54 55 2.447429 TGTCCCACATTAACCCCTTCAA 59.553 45.455 0.00 0.00 0.00 2.69
56 57 1.824852 CCCACATTAACCCCTTCAAGC 59.175 52.381 0.00 0.00 0.00 4.01
59 60 3.193479 CCACATTAACCCCTTCAAGCTTC 59.807 47.826 0.00 0.00 0.00 3.86
60 61 3.193479 CACATTAACCCCTTCAAGCTTCC 59.807 47.826 0.00 0.00 0.00 3.46
62 63 4.291249 ACATTAACCCCTTCAAGCTTCCTA 59.709 41.667 0.00 0.00 0.00 2.94
63 64 5.044105 ACATTAACCCCTTCAAGCTTCCTAT 60.044 40.000 0.00 0.00 0.00 2.57
64 65 3.653835 AACCCCTTCAAGCTTCCTATC 57.346 47.619 0.00 0.00 0.00 2.08
65 66 2.852130 ACCCCTTCAAGCTTCCTATCT 58.148 47.619 0.00 0.00 0.00 1.98
66 67 2.507471 ACCCCTTCAAGCTTCCTATCTG 59.493 50.000 0.00 0.00 0.00 2.90
68 69 2.208431 CCTTCAAGCTTCCTATCTGCG 58.792 52.381 0.00 0.00 0.00 5.18
69 70 2.159043 CCTTCAAGCTTCCTATCTGCGA 60.159 50.000 0.00 0.00 0.00 5.10
71 72 3.103447 TCAAGCTTCCTATCTGCGATG 57.897 47.619 0.00 0.00 0.00 3.84
72 73 2.141517 CAAGCTTCCTATCTGCGATGG 58.858 52.381 0.00 0.00 0.00 3.51
73 74 0.034616 AGCTTCCTATCTGCGATGGC 59.965 55.000 0.00 0.00 40.52 4.40
75 76 1.938926 GCTTCCTATCTGCGATGGCTC 60.939 57.143 0.15 0.00 40.82 4.70
76 77 0.681733 TTCCTATCTGCGATGGCTCC 59.318 55.000 0.15 0.00 40.82 4.70
77 78 0.469892 TCCTATCTGCGATGGCTCCA 60.470 55.000 0.15 0.00 40.82 3.86
78 79 0.320247 CCTATCTGCGATGGCTCCAC 60.320 60.000 0.15 0.00 40.82 4.02
79 80 0.665670 CTATCTGCGATGGCTCCACG 60.666 60.000 0.15 0.00 40.82 4.94
80 81 1.106944 TATCTGCGATGGCTCCACGA 61.107 55.000 0.15 0.00 40.82 4.35
81 82 2.635229 ATCTGCGATGGCTCCACGAC 62.635 60.000 0.15 6.68 40.82 4.34
82 83 3.362399 CTGCGATGGCTCCACGACT 62.362 63.158 0.15 0.00 40.82 4.18
83 84 2.004808 CTGCGATGGCTCCACGACTA 62.005 60.000 0.15 1.52 40.82 2.59
84 85 1.141019 GCGATGGCTCCACGACTAA 59.859 57.895 12.62 0.00 35.83 2.24
86 87 0.456221 CGATGGCTCCACGACTAAGT 59.544 55.000 0.00 0.00 0.00 2.24
87 88 1.534175 CGATGGCTCCACGACTAAGTC 60.534 57.143 0.00 0.00 0.00 3.01
88 89 0.824759 ATGGCTCCACGACTAAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
90 91 1.005097 TGGCTCCACGACTAAGTCCTA 59.995 52.381 0.00 0.00 0.00 2.94
91 92 1.677052 GGCTCCACGACTAAGTCCTAG 59.323 57.143 0.00 0.00 0.00 3.02
92 93 1.065851 GCTCCACGACTAAGTCCTAGC 59.934 57.143 0.00 0.00 0.00 3.42
93 94 2.645802 CTCCACGACTAAGTCCTAGCT 58.354 52.381 0.00 0.00 0.00 3.32
94 95 2.614983 CTCCACGACTAAGTCCTAGCTC 59.385 54.545 0.00 0.00 0.00 4.09
95 96 2.026542 TCCACGACTAAGTCCTAGCTCA 60.027 50.000 0.00 0.00 0.00 4.26
97 98 3.181495 CCACGACTAAGTCCTAGCTCAAG 60.181 52.174 0.00 0.00 0.00 3.02
99 100 3.280295 CGACTAAGTCCTAGCTCAAGGA 58.720 50.000 0.72 0.72 43.58 3.36
106 107 1.759445 TCCTAGCTCAAGGACATCTGC 59.241 52.381 0.72 0.00 40.86 4.26
107 108 1.202627 CCTAGCTCAAGGACATCTGCC 60.203 57.143 0.00 0.00 39.15 4.85
108 109 0.461548 TAGCTCAAGGACATCTGCCG 59.538 55.000 0.00 0.00 0.00 5.69
109 110 1.078848 GCTCAAGGACATCTGCCGT 60.079 57.895 0.00 0.00 0.00 5.68
110 111 1.364626 GCTCAAGGACATCTGCCGTG 61.365 60.000 0.00 0.00 36.42 4.94
112 113 0.037326 TCAAGGACATCTGCCGTGAC 60.037 55.000 0.00 0.00 38.66 3.67
114 115 0.036952 AAGGACATCTGCCGTGACAG 60.037 55.000 0.00 0.00 39.12 3.51
116 117 0.320771 GGACATCTGCCGTGACAGTT 60.321 55.000 0.00 0.00 38.84 3.16
117 118 1.071605 GACATCTGCCGTGACAGTTC 58.928 55.000 0.00 0.00 38.84 3.01
118 119 0.320771 ACATCTGCCGTGACAGTTCC 60.321 55.000 0.00 0.00 38.84 3.62
120 121 0.320771 ATCTGCCGTGACAGTTCCAC 60.321 55.000 0.00 0.00 38.84 4.02
127 128 2.218953 GTGACAGTTCCACGACAAGA 57.781 50.000 0.00 0.00 0.00 3.02
128 129 2.755650 GTGACAGTTCCACGACAAGAT 58.244 47.619 0.00 0.00 0.00 2.40
129 130 2.476619 GTGACAGTTCCACGACAAGATG 59.523 50.000 0.00 0.00 0.00 2.90
130 131 2.069273 GACAGTTCCACGACAAGATGG 58.931 52.381 0.00 0.00 37.32 3.51
131 132 1.270839 ACAGTTCCACGACAAGATGGG 60.271 52.381 0.00 0.00 36.56 4.00
133 134 1.276421 AGTTCCACGACAAGATGGGAG 59.724 52.381 0.00 0.00 36.56 4.30
134 135 1.002087 GTTCCACGACAAGATGGGAGT 59.998 52.381 0.00 0.00 36.56 3.85
135 136 0.608130 TCCACGACAAGATGGGAGTG 59.392 55.000 0.00 0.00 36.56 3.51
137 138 1.021390 CACGACAAGATGGGAGTGCC 61.021 60.000 0.00 0.00 0.00 5.01
138 139 1.811266 CGACAAGATGGGAGTGCCG 60.811 63.158 0.00 0.00 33.83 5.69
140 141 1.899437 GACAAGATGGGAGTGCCGGA 61.899 60.000 5.05 0.00 33.83 5.14
141 142 1.274703 ACAAGATGGGAGTGCCGGAT 61.275 55.000 5.05 0.00 33.83 4.18
143 144 0.107017 AAGATGGGAGTGCCGGATTG 60.107 55.000 5.05 0.00 33.83 2.67
144 145 2.124151 ATGGGAGTGCCGGATTGC 60.124 61.111 5.05 0.00 33.83 3.56
145 146 2.891941 GATGGGAGTGCCGGATTGCA 62.892 60.000 5.05 0.00 39.37 4.08
146 147 2.361104 GGGAGTGCCGGATTGCAA 60.361 61.111 5.05 0.00 44.11 4.08
147 148 1.976474 GGGAGTGCCGGATTGCAAA 60.976 57.895 5.05 0.00 44.11 3.68
148 149 1.531739 GGGAGTGCCGGATTGCAAAA 61.532 55.000 5.05 0.00 44.11 2.44
149 150 0.388520 GGAGTGCCGGATTGCAAAAC 60.389 55.000 5.05 0.26 44.11 2.43
150 151 0.729140 GAGTGCCGGATTGCAAAACG 60.729 55.000 5.05 16.38 44.11 3.60
155 156 3.855630 CGGATTGCAAAACGGACAA 57.144 47.368 15.75 0.00 0.00 3.18
156 157 2.346099 CGGATTGCAAAACGGACAAT 57.654 45.000 15.75 0.00 36.74 2.71
157 158 1.984990 CGGATTGCAAAACGGACAATG 59.015 47.619 15.75 0.00 34.28 2.82
158 159 2.336667 GGATTGCAAAACGGACAATGG 58.663 47.619 1.71 0.00 34.28 3.16
159 160 2.336667 GATTGCAAAACGGACAATGGG 58.663 47.619 1.71 0.00 34.28 4.00
160 161 0.390860 TTGCAAAACGGACAATGGGG 59.609 50.000 0.00 0.00 0.00 4.96
162 163 0.676736 GCAAAACGGACAATGGGGAA 59.323 50.000 0.00 0.00 0.00 3.97
163 164 1.069358 GCAAAACGGACAATGGGGAAA 59.931 47.619 0.00 0.00 0.00 3.13
165 166 3.805457 GCAAAACGGACAATGGGGAAAAT 60.805 43.478 0.00 0.00 0.00 1.82
167 168 0.894835 ACGGACAATGGGGAAAATGC 59.105 50.000 0.00 0.00 0.00 3.56
168 169 1.185315 CGGACAATGGGGAAAATGCT 58.815 50.000 0.00 0.00 0.00 3.79
169 170 1.134946 CGGACAATGGGGAAAATGCTC 59.865 52.381 0.00 0.00 0.00 4.26
170 171 1.134946 GGACAATGGGGAAAATGCTCG 59.865 52.381 0.00 0.00 0.00 5.03
171 172 1.134946 GACAATGGGGAAAATGCTCGG 59.865 52.381 0.00 0.00 0.00 4.63
173 174 2.034124 CAATGGGGAAAATGCTCGGAT 58.966 47.619 0.00 0.00 0.00 4.18
174 175 1.696063 ATGGGGAAAATGCTCGGATG 58.304 50.000 0.00 0.00 0.00 3.51
175 176 1.037030 TGGGGAAAATGCTCGGATGC 61.037 55.000 0.00 0.00 0.00 3.91
182 183 4.842292 TGCTCGGATGCATGAGAC 57.158 55.556 16.17 9.01 38.12 3.36
183 184 1.227060 TGCTCGGATGCATGAGACG 60.227 57.895 16.17 10.00 38.12 4.18
184 185 1.066422 GCTCGGATGCATGAGACGA 59.934 57.895 16.17 13.19 34.04 4.20
185 186 0.528466 GCTCGGATGCATGAGACGAA 60.528 55.000 16.17 1.71 34.04 3.85
186 187 1.203928 CTCGGATGCATGAGACGAAC 58.796 55.000 2.46 0.00 34.04 3.95
188 189 0.647410 CGGATGCATGAGACGAACAC 59.353 55.000 2.46 0.00 0.00 3.32
189 190 0.647410 GGATGCATGAGACGAACACG 59.353 55.000 2.46 0.00 0.00 4.49
190 191 1.350193 GATGCATGAGACGAACACGT 58.650 50.000 2.46 0.00 43.06 4.49
192 193 2.647529 TGCATGAGACGAACACGTAT 57.352 45.000 0.00 0.00 40.41 3.06
193 194 2.258755 TGCATGAGACGAACACGTATG 58.741 47.619 0.00 0.00 40.41 2.39
194 195 1.005975 GCATGAGACGAACACGTATGC 60.006 52.381 11.24 11.24 40.02 3.14
195 196 2.258755 CATGAGACGAACACGTATGCA 58.741 47.619 0.00 0.00 40.41 3.96
196 197 2.425578 TGAGACGAACACGTATGCAA 57.574 45.000 0.00 0.00 40.41 4.08
199 200 3.122780 TGAGACGAACACGTATGCAAATG 59.877 43.478 0.00 0.00 40.41 2.32
200 201 2.159707 AGACGAACACGTATGCAAATGC 60.160 45.455 0.00 0.00 40.41 3.56
202 203 2.031595 ACGAACACGTATGCAAATGCAA 60.032 40.909 12.67 0.00 42.35 4.08
203 204 3.365868 ACGAACACGTATGCAAATGCAAT 60.366 39.130 12.67 4.14 42.35 3.56
204 205 5.423937 ACGAACACGTATGCAAATGCAATG 61.424 41.667 12.67 10.66 42.35 2.82
213 214 3.317744 GCAAATGCAATGCACATGATG 57.682 42.857 21.43 12.69 43.04 3.07
214 215 2.933260 GCAAATGCAATGCACATGATGA 59.067 40.909 21.43 0.00 43.04 2.92
215 216 3.242284 GCAAATGCAATGCACATGATGAC 60.242 43.478 21.43 4.57 43.04 3.06
216 217 3.878160 AATGCAATGCACATGATGACA 57.122 38.095 11.23 0.00 43.04 3.58
217 218 4.400529 AATGCAATGCACATGATGACAT 57.599 36.364 11.23 0.00 43.04 3.06
232 233 6.985188 TGATGACATGATATGAGATGCATG 57.015 37.500 2.46 0.00 42.75 4.06
233 234 6.707290 TGATGACATGATATGAGATGCATGA 58.293 36.000 2.46 0.00 40.29 3.07
234 235 6.594159 TGATGACATGATATGAGATGCATGAC 59.406 38.462 2.46 0.00 40.29 3.06
235 236 5.860611 TGACATGATATGAGATGCATGACA 58.139 37.500 2.46 4.19 40.29 3.58
236 237 6.292923 TGACATGATATGAGATGCATGACAA 58.707 36.000 2.46 0.00 39.26 3.18
237 238 6.426937 TGACATGATATGAGATGCATGACAAG 59.573 38.462 2.46 0.00 39.26 3.16
238 239 6.531021 ACATGATATGAGATGCATGACAAGA 58.469 36.000 2.46 0.00 40.29 3.02
240 241 6.856135 TGATATGAGATGCATGACAAGAAC 57.144 37.500 2.46 0.00 37.87 3.01
243 244 5.970317 ATGAGATGCATGACAAGAACAAA 57.030 34.783 2.46 0.00 35.42 2.83
246 247 6.153756 TGAGATGCATGACAAGAACAAAATG 58.846 36.000 2.46 0.00 0.00 2.32
247 248 4.927425 AGATGCATGACAAGAACAAAATGC 59.073 37.500 2.46 0.00 40.57 3.56
249 250 4.439968 TGCATGACAAGAACAAAATGCAA 58.560 34.783 5.71 0.00 45.25 4.08
250 251 4.874396 TGCATGACAAGAACAAAATGCAAA 59.126 33.333 5.71 0.00 45.25 3.68
251 252 5.353400 TGCATGACAAGAACAAAATGCAAAA 59.647 32.000 5.71 0.00 45.25 2.44
252 253 5.678047 GCATGACAAGAACAAAATGCAAAAC 59.322 36.000 0.00 0.00 40.05 2.43
253 254 5.447478 TGACAAGAACAAAATGCAAAACG 57.553 34.783 0.00 0.00 0.00 3.60
254 255 5.164233 TGACAAGAACAAAATGCAAAACGA 58.836 33.333 0.00 0.00 0.00 3.85
257 258 6.533185 ACAAGAACAAAATGCAAAACGAAAG 58.467 32.000 0.00 0.00 0.00 2.62
259 260 6.331170 AGAACAAAATGCAAAACGAAAGAC 57.669 33.333 0.00 0.00 0.00 3.01
261 262 6.367422 AGAACAAAATGCAAAACGAAAGACAA 59.633 30.769 0.00 0.00 0.00 3.18
262 263 6.473397 ACAAAATGCAAAACGAAAGACAAA 57.527 29.167 0.00 0.00 0.00 2.83
264 265 6.794636 ACAAAATGCAAAACGAAAGACAAAAC 59.205 30.769 0.00 0.00 0.00 2.43
265 266 5.463499 AATGCAAAACGAAAGACAAAACC 57.537 34.783 0.00 0.00 0.00 3.27
266 267 3.254892 TGCAAAACGAAAGACAAAACCC 58.745 40.909 0.00 0.00 0.00 4.11
267 268 2.280445 GCAAAACGAAAGACAAAACCCG 59.720 45.455 0.00 0.00 0.00 5.28
269 270 3.409851 AAACGAAAGACAAAACCCGAC 57.590 42.857 0.00 0.00 0.00 4.79
270 271 1.302366 ACGAAAGACAAAACCCGACC 58.698 50.000 0.00 0.00 0.00 4.79
271 272 1.301423 CGAAAGACAAAACCCGACCA 58.699 50.000 0.00 0.00 0.00 4.02
272 273 1.003223 CGAAAGACAAAACCCGACCAC 60.003 52.381 0.00 0.00 0.00 4.16
273 274 1.003223 GAAAGACAAAACCCGACCACG 60.003 52.381 0.00 0.00 39.43 4.94
275 276 0.178533 AGACAAAACCCGACCACGAA 59.821 50.000 0.00 0.00 42.66 3.85
276 277 0.584876 GACAAAACCCGACCACGAAG 59.415 55.000 0.00 0.00 42.66 3.79
277 278 0.816421 ACAAAACCCGACCACGAAGG 60.816 55.000 0.00 0.00 42.66 3.46
284 285 2.150397 CCGACCACGAAGGGAATATC 57.850 55.000 0.00 0.00 43.89 1.63
285 286 1.411246 CCGACCACGAAGGGAATATCA 59.589 52.381 0.00 0.00 43.89 2.15
286 287 2.037251 CCGACCACGAAGGGAATATCAT 59.963 50.000 0.00 0.00 43.89 2.45
287 288 3.257375 CCGACCACGAAGGGAATATCATA 59.743 47.826 0.00 0.00 43.89 2.15
289 290 4.684703 CGACCACGAAGGGAATATCATAAC 59.315 45.833 0.00 0.00 43.89 1.89
294 295 6.073058 CCACGAAGGGAATATCATAACACATG 60.073 42.308 0.00 0.00 0.00 3.21
298 299 3.440173 GGGAATATCATAACACATGGCCG 59.560 47.826 0.00 0.00 0.00 6.13
299 300 4.323417 GGAATATCATAACACATGGCCGA 58.677 43.478 0.00 0.00 0.00 5.54
300 301 4.759693 GGAATATCATAACACATGGCCGAA 59.240 41.667 0.00 0.00 0.00 4.30
301 302 5.240623 GGAATATCATAACACATGGCCGAAA 59.759 40.000 0.00 0.00 0.00 3.46
303 304 6.899393 ATATCATAACACATGGCCGAAAAT 57.101 33.333 0.00 0.00 0.00 1.82
304 305 4.368874 TCATAACACATGGCCGAAAATG 57.631 40.909 0.00 0.00 0.00 2.32
305 306 3.130164 TCATAACACATGGCCGAAAATGG 59.870 43.478 0.00 0.00 0.00 3.16
315 316 2.352503 CCGAAAATGGCAAGAGTTGG 57.647 50.000 0.00 0.00 0.00 3.77
317 318 2.095059 CCGAAAATGGCAAGAGTTGGAG 60.095 50.000 0.00 0.00 0.00 3.86
319 320 3.004734 CGAAAATGGCAAGAGTTGGAGTT 59.995 43.478 0.00 0.00 0.00 3.01
320 321 4.215399 CGAAAATGGCAAGAGTTGGAGTTA 59.785 41.667 0.00 0.00 0.00 2.24
322 323 3.788227 ATGGCAAGAGTTGGAGTTACA 57.212 42.857 0.00 0.00 0.00 2.41
323 324 3.569194 TGGCAAGAGTTGGAGTTACAA 57.431 42.857 0.00 0.00 0.00 2.41
324 325 3.892284 TGGCAAGAGTTGGAGTTACAAA 58.108 40.909 0.00 0.00 31.17 2.83
325 326 4.469657 TGGCAAGAGTTGGAGTTACAAAT 58.530 39.130 0.00 0.00 31.17 2.32
326 327 5.626142 TGGCAAGAGTTGGAGTTACAAATA 58.374 37.500 0.00 0.00 31.17 1.40
327 328 6.245408 TGGCAAGAGTTGGAGTTACAAATAT 58.755 36.000 0.00 0.00 31.17 1.28
328 329 6.150976 TGGCAAGAGTTGGAGTTACAAATATG 59.849 38.462 0.00 0.00 31.17 1.78
329 330 6.404734 GGCAAGAGTTGGAGTTACAAATATGG 60.405 42.308 0.00 0.00 31.17 2.74
333 334 8.567285 AGAGTTGGAGTTACAAATATGGAAAG 57.433 34.615 0.00 0.00 28.98 2.62
335 336 8.706322 AGTTGGAGTTACAAATATGGAAAGTT 57.294 30.769 0.00 0.00 28.98 2.66
337 338 9.836076 GTTGGAGTTACAAATATGGAAAGTTAC 57.164 33.333 0.00 0.00 28.98 2.50
338 339 9.575868 TTGGAGTTACAAATATGGAAAGTTACA 57.424 29.630 0.00 0.00 28.98 2.41
339 340 9.747898 TGGAGTTACAAATATGGAAAGTTACAT 57.252 29.630 0.00 0.00 35.48 2.29
342 343 8.889717 AGTTACAAATATGGAAAGTTACATCCG 58.110 33.333 0.00 0.00 38.63 4.18
343 344 6.693315 ACAAATATGGAAAGTTACATCCGG 57.307 37.500 0.00 0.00 38.63 5.14
344 345 5.592688 ACAAATATGGAAAGTTACATCCGGG 59.407 40.000 0.00 0.00 38.63 5.73
345 346 2.729028 ATGGAAAGTTACATCCGGGG 57.271 50.000 0.00 0.00 38.63 5.73
346 347 1.364269 TGGAAAGTTACATCCGGGGT 58.636 50.000 0.00 2.79 38.63 4.95
347 348 1.003812 TGGAAAGTTACATCCGGGGTG 59.996 52.381 5.55 5.55 38.63 4.61
350 351 3.307621 GGAAAGTTACATCCGGGGTGTTA 60.308 47.826 19.71 6.65 0.00 2.41
381 1203 0.321122 CTGGGAGGTGCAGTCTTCAC 60.321 60.000 0.00 0.00 0.00 3.18
425 1247 4.299796 TGGCCTTGGGGTGCTTCC 62.300 66.667 3.32 0.00 34.45 3.46
445 1267 1.068121 CTTCCTCCTTTGGGGTGTCT 58.932 55.000 0.00 0.00 36.25 3.41
458 1280 1.276421 GGGTGTCTCTTAGCTGCTTGA 59.724 52.381 7.79 6.18 0.00 3.02
477 1299 0.606604 ATGGCGTTGGTCTTCGTACT 59.393 50.000 0.00 0.00 0.00 2.73
486 1308 5.164119 CGTTGGTCTTCGTACTTAATGACAC 60.164 44.000 0.00 0.00 0.00 3.67
506 1328 7.056006 TGACACATAGCATATTTTGGTGAGAT 58.944 34.615 0.00 0.00 37.26 2.75
545 1367 8.666573 CCATTCATGTTCATATCTATCTCAAGC 58.333 37.037 0.00 0.00 0.00 4.01
576 1398 1.072505 ACCTCGGTTTCAATGGCGT 59.927 52.632 0.00 0.00 0.00 5.68
603 1425 3.197766 TCGAGCTTTTGTCATAGGTCCAT 59.802 43.478 0.00 0.00 35.93 3.41
606 1428 4.012374 AGCTTTTGTCATAGGTCCATGTG 58.988 43.478 0.00 0.00 0.00 3.21
607 1429 4.009675 GCTTTTGTCATAGGTCCATGTGA 58.990 43.478 0.00 0.00 0.00 3.58
618 1440 2.098607 GGTCCATGTGATGCTTGATGTG 59.901 50.000 0.00 0.00 0.00 3.21
632 1454 3.134574 TGATGTGTTGGTGTAGGGTTC 57.865 47.619 0.00 0.00 0.00 3.62
636 1458 2.159382 GTGTTGGTGTAGGGTTCATGG 58.841 52.381 0.00 0.00 0.00 3.66
645 1467 1.612035 AGGGTTCATGGGGATGATGT 58.388 50.000 0.00 0.00 0.00 3.06
646 1468 1.496429 AGGGTTCATGGGGATGATGTC 59.504 52.381 0.00 0.00 0.00 3.06
677 1508 2.526304 AGTGTAGTGCTGCGAGAAAA 57.474 45.000 0.00 0.00 0.00 2.29
688 1519 5.050295 GTGCTGCGAGAAAAATATACTACCC 60.050 44.000 0.00 0.00 0.00 3.69
689 1520 4.451435 GCTGCGAGAAAAATATACTACCCC 59.549 45.833 0.00 0.00 0.00 4.95
690 1521 4.964593 TGCGAGAAAAATATACTACCCCC 58.035 43.478 0.00 0.00 0.00 5.40
694 1525 5.545588 GAGAAAAATATACTACCCCCGTCC 58.454 45.833 0.00 0.00 0.00 4.79
704 1535 0.622136 ACCCCCGTCCTGGTTTATTC 59.378 55.000 0.00 0.00 35.15 1.75
726 1557 3.697045 CGCCCCCTTATTATTTTGTGTCA 59.303 43.478 0.00 0.00 0.00 3.58
812 1643 8.165212 TGTAAACTACACTCAAATACGAATCG 57.835 34.615 0.00 0.00 32.89 3.34
816 1647 4.817987 ACACTCAAATACGAATCGAACG 57.182 40.909 10.55 12.49 0.00 3.95
899 1752 4.591929 AGACCAAGACAGAGGTAGTACTC 58.408 47.826 0.00 0.00 38.50 2.59
906 1759 2.761208 ACAGAGGTAGTACTCCATGTGC 59.239 50.000 0.00 0.00 38.26 4.57
909 1762 3.838317 AGAGGTAGTACTCCATGTGCAAA 59.162 43.478 0.00 0.00 38.26 3.68
930 1783 1.156736 GCTGCCAGCGAGTAGAAAAA 58.843 50.000 0.00 0.00 0.00 1.94
991 1925 2.501223 GATCCAACGGTGGTCGAGCA 62.501 60.000 21.31 14.39 46.11 4.26
1068 2005 1.484653 GGGAAGAGGAGAGAGGAAAGC 59.515 57.143 0.00 0.00 0.00 3.51
1069 2006 2.183679 GGAAGAGGAGAGAGGAAAGCA 58.816 52.381 0.00 0.00 0.00 3.91
1070 2007 2.168313 GGAAGAGGAGAGAGGAAAGCAG 59.832 54.545 0.00 0.00 0.00 4.24
1071 2008 2.917713 AGAGGAGAGAGGAAAGCAGA 57.082 50.000 0.00 0.00 0.00 4.26
1072 2009 3.182887 AGAGGAGAGAGGAAAGCAGAA 57.817 47.619 0.00 0.00 0.00 3.02
1073 2010 3.099141 AGAGGAGAGAGGAAAGCAGAAG 58.901 50.000 0.00 0.00 0.00 2.85
1074 2011 1.554617 AGGAGAGAGGAAAGCAGAAGC 59.445 52.381 0.00 0.00 42.56 3.86
1075 2012 1.277557 GGAGAGAGGAAAGCAGAAGCA 59.722 52.381 0.00 0.00 45.49 3.91
1076 2013 2.345876 GAGAGAGGAAAGCAGAAGCAC 58.654 52.381 0.00 0.00 45.49 4.40
1077 2014 1.074752 GAGAGGAAAGCAGAAGCACG 58.925 55.000 0.00 0.00 45.49 5.34
1078 2015 0.952984 AGAGGAAAGCAGAAGCACGC 60.953 55.000 0.00 0.00 45.49 5.34
1079 2016 2.174349 GGAAAGCAGAAGCACGCG 59.826 61.111 3.53 3.53 45.49 6.01
1080 2017 2.174349 GAAAGCAGAAGCACGCGG 59.826 61.111 12.47 0.00 45.49 6.46
1106 2043 1.465187 GCACCTCGTCGCCAAAAATAC 60.465 52.381 0.00 0.00 0.00 1.89
1107 2044 1.129811 CACCTCGTCGCCAAAAATACC 59.870 52.381 0.00 0.00 0.00 2.73
1108 2045 1.270947 ACCTCGTCGCCAAAAATACCA 60.271 47.619 0.00 0.00 0.00 3.25
1109 2046 2.014128 CCTCGTCGCCAAAAATACCAT 58.986 47.619 0.00 0.00 0.00 3.55
1110 2047 3.199677 CCTCGTCGCCAAAAATACCATA 58.800 45.455 0.00 0.00 0.00 2.74
1111 2048 3.001939 CCTCGTCGCCAAAAATACCATAC 59.998 47.826 0.00 0.00 0.00 2.39
1112 2049 3.597255 TCGTCGCCAAAAATACCATACA 58.403 40.909 0.00 0.00 0.00 2.29
1113 2050 4.001652 TCGTCGCCAAAAATACCATACAA 58.998 39.130 0.00 0.00 0.00 2.41
1114 2051 4.636648 TCGTCGCCAAAAATACCATACAAT 59.363 37.500 0.00 0.00 0.00 2.71
1115 2052 4.967575 CGTCGCCAAAAATACCATACAATC 59.032 41.667 0.00 0.00 0.00 2.67
1116 2053 5.278604 GTCGCCAAAAATACCATACAATCC 58.721 41.667 0.00 0.00 0.00 3.01
1117 2054 4.950475 TCGCCAAAAATACCATACAATCCA 59.050 37.500 0.00 0.00 0.00 3.41
1118 2055 5.596361 TCGCCAAAAATACCATACAATCCAT 59.404 36.000 0.00 0.00 0.00 3.41
1119 2056 5.920273 CGCCAAAAATACCATACAATCCATC 59.080 40.000 0.00 0.00 0.00 3.51
1120 2057 6.223120 GCCAAAAATACCATACAATCCATCC 58.777 40.000 0.00 0.00 0.00 3.51
1121 2058 6.741240 GCCAAAAATACCATACAATCCATCCC 60.741 42.308 0.00 0.00 0.00 3.85
1122 2059 6.446318 CAAAAATACCATACAATCCATCCCG 58.554 40.000 0.00 0.00 0.00 5.14
1156 2283 0.965866 TCGCACCTCATCCTTCTCGT 60.966 55.000 0.00 0.00 0.00 4.18
1220 2347 2.698855 ATGAGGACGTCATCTTTGGG 57.301 50.000 28.17 0.00 42.80 4.12
1640 2767 1.895707 CGCCTCCAATGCCTCCATC 60.896 63.158 0.00 0.00 0.00 3.51
1673 2800 4.065110 GCAGTTCTCGCCAACCTT 57.935 55.556 0.00 0.00 0.00 3.50
1727 2854 2.650116 CCTCACTGGTGGACTCCCG 61.650 68.421 0.70 0.00 34.29 5.14
1781 2908 1.884579 CTGCAGCTGAACAACCAGATT 59.115 47.619 20.43 0.00 36.29 2.40
2118 3245 1.873591 CGCTGGTTACAACTCTGCTTT 59.126 47.619 0.00 0.00 0.00 3.51
2590 3717 4.832266 TGTTGGGCTTTTTGTACATCATCT 59.168 37.500 0.00 0.00 0.00 2.90
2635 3762 1.280133 CAGGCCAGTCTCATCAAAGGA 59.720 52.381 5.01 0.00 0.00 3.36
2744 3871 1.831652 GCCAGGTGAGTGCTGGTAGT 61.832 60.000 0.00 0.00 40.21 2.73
2833 3960 5.765182 CCACAGACAACTTTAATGAGGACTT 59.235 40.000 0.00 0.00 0.00 3.01
3058 4185 7.091533 TCCTGGTCTATGAGTATATGTCTGA 57.908 40.000 0.00 0.00 0.00 3.27
3155 4282 2.760634 TAGCTTTGGATGTTGCGAGA 57.239 45.000 0.00 0.00 0.00 4.04
3290 4417 3.077359 GGTCAAGCTTGCTAATGACACT 58.923 45.455 21.99 0.00 43.02 3.55
3432 4559 7.443879 TCTTGCACAAGTTTCTTGTATCACATA 59.556 33.333 13.55 2.54 39.38 2.29
3579 4706 2.119801 ATGCTTGGCACTTCCTACAG 57.880 50.000 0.00 0.00 43.04 2.74
3606 4733 5.519206 CGCCTTACCACTTAGAACTGTAATC 59.481 44.000 0.00 0.00 0.00 1.75
3780 4907 9.273137 TCAGGGAGATAGAAGAAACTCTAATTT 57.727 33.333 0.00 0.00 31.76 1.82
3906 5035 5.104776 TCAAGGAATACAATCTGGACTCTGG 60.105 44.000 0.00 0.00 0.00 3.86
3939 5068 5.972107 AATACGGACGCTGTACCTAATAT 57.028 39.130 1.43 0.00 0.00 1.28
4085 5215 0.029834 CACTCACTGCACAAACAGCC 59.970 55.000 0.00 0.00 41.60 4.85
4174 5343 0.106217 CAGAAACCCCAACCCACTGT 60.106 55.000 0.00 0.00 0.00 3.55
4232 5401 3.294493 GAACCTTGGCTGGCGCAA 61.294 61.111 10.83 0.00 38.10 4.85
4245 5414 2.967076 CGCAAGCACCACACGACT 60.967 61.111 0.00 0.00 0.00 4.18
4248 5417 0.721718 GCAAGCACCACACGACTATC 59.278 55.000 0.00 0.00 0.00 2.08
4271 5440 1.136828 AATGGCGGGGAGTATAGCAA 58.863 50.000 0.00 0.00 0.00 3.91
4274 5443 0.756903 GGCGGGGAGTATAGCAAGAA 59.243 55.000 0.00 0.00 0.00 2.52
4412 8007 7.554118 GGTCCATGCAATATATACAAGCTGTAT 59.446 37.037 11.76 11.76 44.89 2.29
4413 8008 8.607459 GTCCATGCAATATATACAAGCTGTATC 58.393 37.037 10.76 0.34 42.16 2.24
4414 8009 7.770433 TCCATGCAATATATACAAGCTGTATCC 59.230 37.037 10.76 0.00 42.16 2.59
4415 8010 7.012704 CCATGCAATATATACAAGCTGTATCCC 59.987 40.741 10.76 0.03 42.16 3.85
4416 8011 7.257790 TGCAATATATACAAGCTGTATCCCT 57.742 36.000 10.76 3.29 42.16 4.20
4417 8012 8.374184 TGCAATATATACAAGCTGTATCCCTA 57.626 34.615 10.76 4.82 42.16 3.53
4418 8013 8.821817 TGCAATATATACAAGCTGTATCCCTAA 58.178 33.333 10.76 0.00 42.16 2.69
4419 8014 9.099454 GCAATATATACAAGCTGTATCCCTAAC 57.901 37.037 10.76 0.00 42.16 2.34
4423 8018 4.634012 ACAAGCTGTATCCCTAACAACA 57.366 40.909 0.00 0.00 0.00 3.33
4424 8019 4.980573 ACAAGCTGTATCCCTAACAACAA 58.019 39.130 0.00 0.00 0.00 2.83
4425 8020 4.760204 ACAAGCTGTATCCCTAACAACAAC 59.240 41.667 0.00 0.00 0.00 3.32
4426 8021 4.634012 AGCTGTATCCCTAACAACAACA 57.366 40.909 0.00 0.00 0.00 3.33
4427 8022 4.980573 AGCTGTATCCCTAACAACAACAA 58.019 39.130 0.00 0.00 0.00 2.83
4428 8023 4.760204 AGCTGTATCCCTAACAACAACAAC 59.240 41.667 0.00 0.00 0.00 3.32
4429 8024 4.517453 GCTGTATCCCTAACAACAACAACA 59.483 41.667 0.00 0.00 0.00 3.33
4430 8025 5.009210 GCTGTATCCCTAACAACAACAACAA 59.991 40.000 0.00 0.00 0.00 2.83
4431 8026 6.380095 TGTATCCCTAACAACAACAACAAC 57.620 37.500 0.00 0.00 0.00 3.32
4432 8027 5.886474 TGTATCCCTAACAACAACAACAACA 59.114 36.000 0.00 0.00 0.00 3.33
4433 8028 5.923733 ATCCCTAACAACAACAACAACAA 57.076 34.783 0.00 0.00 0.00 2.83
4434 8029 5.061920 TCCCTAACAACAACAACAACAAC 57.938 39.130 0.00 0.00 0.00 3.32
4435 8030 4.082136 TCCCTAACAACAACAACAACAACC 60.082 41.667 0.00 0.00 0.00 3.77
4436 8031 4.322049 CCCTAACAACAACAACAACAACCA 60.322 41.667 0.00 0.00 0.00 3.67
4437 8032 4.623595 CCTAACAACAACAACAACAACCAC 59.376 41.667 0.00 0.00 0.00 4.16
4438 8033 3.735237 ACAACAACAACAACAACCACA 57.265 38.095 0.00 0.00 0.00 4.17
4495 8090 5.819991 AGAGCTGAAACCCATAAAATCTCA 58.180 37.500 0.00 0.00 0.00 3.27
4498 8093 7.398332 AGAGCTGAAACCCATAAAATCTCAAAT 59.602 33.333 0.00 0.00 0.00 2.32
4512 8107 8.807667 AAAATCTCAAATTCAACTCATGTCAC 57.192 30.769 0.00 0.00 0.00 3.67
4513 8108 7.514784 AATCTCAAATTCAACTCATGTCACA 57.485 32.000 0.00 0.00 0.00 3.58
4539 8135 4.640647 GGGGTTGTTTGGATAGTGAGATTC 59.359 45.833 0.00 0.00 0.00 2.52
4647 8243 3.393278 ACTACCCAGTTTTCTACAAGCCA 59.607 43.478 0.00 0.00 0.00 4.75
4771 8372 3.257561 CAACATCGCCGAGCTCCG 61.258 66.667 8.47 7.12 38.18 4.63
4784 8385 2.508891 GCTCCGCACGTCATCTTCG 61.509 63.158 0.00 0.00 0.00 3.79
4806 8490 0.108329 GTACATGCTAGTGGCCACGT 60.108 55.000 29.68 21.54 40.92 4.49
4807 8491 0.108377 TACATGCTAGTGGCCACGTG 60.108 55.000 29.68 25.08 40.92 4.49
4808 8492 2.436646 ATGCTAGTGGCCACGTGC 60.437 61.111 33.93 33.93 40.92 5.34
5112 8801 3.129502 CAGGTCAGCACCATGGCG 61.130 66.667 13.04 2.63 46.68 5.69
5143 8832 1.597854 CTCGTTCTTGTGGGCAGCA 60.598 57.895 0.00 0.00 0.00 4.41
5161 8858 2.835764 AGCATCAACATGGAAGCCATTT 59.164 40.909 0.00 0.00 42.23 2.32
5171 8868 1.620323 GGAAGCCATTTTTGTGCTCCT 59.380 47.619 0.00 0.00 33.36 3.69
5270 8991 3.186345 CTGGAAGCATGCATGAGGT 57.814 52.632 30.64 13.62 0.00 3.85
5598 11188 6.045318 CGACCTCTCTTGACATTATCAACAT 58.955 40.000 0.00 0.00 42.62 2.71
5696 11289 3.152341 CAAGCCTCTCTTCAATTGGTGT 58.848 45.455 5.42 0.00 31.27 4.16
5907 11506 2.234661 TGTGGCACTCTCTTGTGATAGG 59.765 50.000 19.83 0.00 40.12 2.57
6353 12293 1.806542 AGGTAATTTGACTGCACGCTG 59.193 47.619 0.00 0.00 0.00 5.18
6384 12324 8.668510 ATGTCATCTATTTTGGTACAGATGTC 57.331 34.615 14.73 11.36 43.14 3.06
6717 12657 0.833287 GGAGGTAGCTGATCTTGCCA 59.167 55.000 0.00 0.00 0.00 4.92
7040 12980 2.892425 CTCCTGCAATCGCCGACC 60.892 66.667 0.00 0.00 37.32 4.79
7256 13197 4.207891 AGTAACATTGAACAGCCGATCT 57.792 40.909 0.00 0.00 0.00 2.75
7333 13274 1.185618 ACAAGTCTACGGCAGAGGCA 61.186 55.000 0.00 0.00 43.71 4.75
7350 13291 6.222389 CAGAGGCATTTTCTAGGATGTAGAG 58.778 44.000 0.00 0.00 0.00 2.43
7357 13298 4.650754 TTCTAGGATGTAGAGGCGTTTC 57.349 45.455 0.00 0.00 0.00 2.78
7407 13350 6.716628 TGAACTATCAAGCACAAGGAATTCTT 59.283 34.615 5.23 0.00 31.71 2.52
7408 13351 7.231317 TGAACTATCAAGCACAAGGAATTCTTT 59.769 33.333 5.23 0.35 30.03 2.52
7439 13382 1.680338 AATGCTAAATGGAGGCCGAC 58.320 50.000 0.00 0.00 0.00 4.79
7576 13532 9.435688 AAAATGAAAGCTACACAAAGAAAAAGT 57.564 25.926 0.00 0.00 0.00 2.66
7578 13534 6.255215 TGAAAGCTACACAAAGAAAAAGTCG 58.745 36.000 0.00 0.00 0.00 4.18
7755 13712 9.277783 TGAAACTGAAAAGTTTGGATTTTGAAA 57.722 25.926 8.49 0.00 41.49 2.69
7815 13772 0.796312 CGTACTCTTTTGCGTGGCAT 59.204 50.000 0.00 0.00 38.76 4.40
7834 13791 7.496747 GTGGCATTTTATAATTGGGTGTATGT 58.503 34.615 0.00 0.00 0.00 2.29
7904 13862 1.810030 CGCCACTCGCCTTAGGTTC 60.810 63.158 0.00 0.00 0.00 3.62
8151 14138 1.771854 TCTTTGGTAGGAGCAACACCA 59.228 47.619 0.00 0.00 40.55 4.17
8152 14139 2.375174 TCTTTGGTAGGAGCAACACCAT 59.625 45.455 0.00 0.00 41.80 3.55
8166 14153 4.439153 GCAACACCATACATGAATGACCAG 60.439 45.833 0.00 0.00 0.00 4.00
8168 14155 3.054139 ACACCATACATGAATGACCAGCT 60.054 43.478 0.00 0.00 0.00 4.24
8174 14161 3.341823 ACATGAATGACCAGCTCACTTC 58.658 45.455 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.671979 GTTTATACTGGTTCGGCCCC 58.328 55.000 0.00 0.00 36.04 5.80
3 4 1.211212 AGGGTTTATACTGGTTCGGCC 59.789 52.381 0.00 0.00 37.90 6.13
4 5 2.681344 CAAGGGTTTATACTGGTTCGGC 59.319 50.000 0.00 0.00 0.00 5.54
8 9 5.074804 GGAACACAAGGGTTTATACTGGTT 58.925 41.667 0.00 0.00 0.00 3.67
10 11 4.918588 AGGAACACAAGGGTTTATACTGG 58.081 43.478 0.00 0.00 0.00 4.00
18 19 1.411074 GGGACAAGGAACACAAGGGTT 60.411 52.381 0.00 0.00 0.00 4.11
20 21 0.184933 TGGGACAAGGAACACAAGGG 59.815 55.000 0.00 0.00 31.92 3.95
21 22 1.318576 GTGGGACAAGGAACACAAGG 58.681 55.000 0.00 0.00 44.16 3.61
22 23 2.051334 TGTGGGACAAGGAACACAAG 57.949 50.000 0.00 0.00 44.16 3.16
23 24 2.746279 ATGTGGGACAAGGAACACAA 57.254 45.000 0.00 0.00 45.65 3.33
26 27 3.492337 GGTTAATGTGGGACAAGGAACA 58.508 45.455 0.00 0.00 44.16 3.18
27 28 2.823747 GGGTTAATGTGGGACAAGGAAC 59.176 50.000 0.00 0.00 44.16 3.62
28 29 2.225167 GGGGTTAATGTGGGACAAGGAA 60.225 50.000 0.00 0.00 44.16 3.36
29 30 1.356398 GGGGTTAATGTGGGACAAGGA 59.644 52.381 0.00 0.00 44.16 3.36
30 31 1.357761 AGGGGTTAATGTGGGACAAGG 59.642 52.381 0.00 0.00 44.16 3.61
31 32 2.899303 AGGGGTTAATGTGGGACAAG 57.101 50.000 0.00 0.00 44.16 3.16
32 33 2.447429 TGAAGGGGTTAATGTGGGACAA 59.553 45.455 0.00 0.00 44.16 3.18
33 34 2.066592 TGAAGGGGTTAATGTGGGACA 58.933 47.619 0.00 0.00 0.00 4.02
34 35 2.891191 TGAAGGGGTTAATGTGGGAC 57.109 50.000 0.00 0.00 0.00 4.46
35 36 2.556559 GCTTGAAGGGGTTAATGTGGGA 60.557 50.000 0.00 0.00 0.00 4.37
36 37 1.824852 GCTTGAAGGGGTTAATGTGGG 59.175 52.381 0.00 0.00 0.00 4.61
37 38 2.807676 AGCTTGAAGGGGTTAATGTGG 58.192 47.619 0.00 0.00 0.00 4.17
38 39 3.193479 GGAAGCTTGAAGGGGTTAATGTG 59.807 47.826 2.10 0.00 0.00 3.21
40 41 3.701664 AGGAAGCTTGAAGGGGTTAATG 58.298 45.455 2.10 0.00 0.00 1.90
42 43 4.788617 AGATAGGAAGCTTGAAGGGGTTAA 59.211 41.667 2.10 0.00 0.00 2.01
45 46 2.507471 CAGATAGGAAGCTTGAAGGGGT 59.493 50.000 2.10 0.00 0.00 4.95
47 48 2.570135 GCAGATAGGAAGCTTGAAGGG 58.430 52.381 2.10 0.00 0.00 3.95
48 49 2.159043 TCGCAGATAGGAAGCTTGAAGG 60.159 50.000 2.10 0.00 0.00 3.46
49 50 3.170791 TCGCAGATAGGAAGCTTGAAG 57.829 47.619 2.10 0.00 0.00 3.02
50 51 3.461061 CATCGCAGATAGGAAGCTTGAA 58.539 45.455 2.10 0.00 45.12 2.69
53 54 1.542108 GCCATCGCAGATAGGAAGCTT 60.542 52.381 0.00 0.00 45.12 3.74
54 55 0.034616 GCCATCGCAGATAGGAAGCT 59.965 55.000 0.00 0.00 45.12 3.74
56 57 1.337635 GGAGCCATCGCAGATAGGAAG 60.338 57.143 0.00 0.00 45.12 3.46
59 60 0.320247 GTGGAGCCATCGCAGATAGG 60.320 60.000 0.00 0.00 45.12 2.57
60 61 0.665670 CGTGGAGCCATCGCAGATAG 60.666 60.000 0.00 0.00 45.12 2.08
62 63 2.107750 CGTGGAGCCATCGCAGAT 59.892 61.111 0.00 0.00 45.12 2.90
63 64 3.068064 TCGTGGAGCCATCGCAGA 61.068 61.111 0.00 0.00 45.75 4.26
64 65 2.004808 TAGTCGTGGAGCCATCGCAG 62.005 60.000 0.00 0.00 37.52 5.18
65 66 1.600511 TTAGTCGTGGAGCCATCGCA 61.601 55.000 0.00 0.00 37.52 5.10
66 67 0.872021 CTTAGTCGTGGAGCCATCGC 60.872 60.000 0.00 0.00 0.00 4.58
68 69 1.202428 GGACTTAGTCGTGGAGCCATC 60.202 57.143 6.27 0.00 32.65 3.51
69 70 0.824759 GGACTTAGTCGTGGAGCCAT 59.175 55.000 6.27 0.00 32.65 4.40
71 72 1.677052 CTAGGACTTAGTCGTGGAGCC 59.323 57.143 16.60 0.00 32.19 4.70
72 73 1.065851 GCTAGGACTTAGTCGTGGAGC 59.934 57.143 19.72 15.76 32.19 4.70
73 74 2.614983 GAGCTAGGACTTAGTCGTGGAG 59.385 54.545 19.72 10.61 32.19 3.86
75 76 2.366533 TGAGCTAGGACTTAGTCGTGG 58.633 52.381 16.60 14.69 32.77 4.94
76 77 3.181495 CCTTGAGCTAGGACTTAGTCGTG 60.181 52.174 16.60 8.49 37.50 4.35
77 78 3.018149 CCTTGAGCTAGGACTTAGTCGT 58.982 50.000 12.28 12.28 37.50 4.34
78 79 3.280295 TCCTTGAGCTAGGACTTAGTCG 58.720 50.000 6.27 0.00 39.40 4.18
86 87 1.759445 GCAGATGTCCTTGAGCTAGGA 59.241 52.381 0.72 0.72 42.02 2.94
87 88 1.202627 GGCAGATGTCCTTGAGCTAGG 60.203 57.143 0.00 0.00 36.59 3.02
88 89 1.537776 CGGCAGATGTCCTTGAGCTAG 60.538 57.143 0.00 0.00 0.00 3.42
90 91 1.220206 CGGCAGATGTCCTTGAGCT 59.780 57.895 0.00 0.00 0.00 4.09
91 92 1.078848 ACGGCAGATGTCCTTGAGC 60.079 57.895 0.00 0.00 0.00 4.26
92 93 0.247460 TCACGGCAGATGTCCTTGAG 59.753 55.000 0.00 0.00 29.84 3.02
93 94 0.037326 GTCACGGCAGATGTCCTTGA 60.037 55.000 0.00 0.00 30.61 3.02
94 95 0.320683 TGTCACGGCAGATGTCCTTG 60.321 55.000 0.00 0.00 0.00 3.61
95 96 0.036952 CTGTCACGGCAGATGTCCTT 60.037 55.000 0.00 0.00 38.70 3.36
97 98 0.320771 AACTGTCACGGCAGATGTCC 60.321 55.000 5.50 0.00 39.62 4.02
99 100 0.320771 GGAACTGTCACGGCAGATGT 60.321 55.000 5.50 0.00 39.62 3.06
100 101 0.320683 TGGAACTGTCACGGCAGATG 60.321 55.000 5.50 0.00 39.62 2.90
101 102 0.320771 GTGGAACTGTCACGGCAGAT 60.321 55.000 5.50 0.00 39.62 2.90
103 104 3.642755 GTGGAACTGTCACGGCAG 58.357 61.111 0.00 0.00 41.92 4.85
108 109 2.218953 TCTTGTCGTGGAACTGTCAC 57.781 50.000 0.00 0.00 31.75 3.67
109 110 2.547855 CCATCTTGTCGTGGAACTGTCA 60.548 50.000 0.00 0.00 37.72 3.58
110 111 2.069273 CCATCTTGTCGTGGAACTGTC 58.931 52.381 0.00 0.00 37.72 3.51
112 113 1.001974 TCCCATCTTGTCGTGGAACTG 59.998 52.381 0.00 0.00 37.72 3.16
114 115 1.002087 ACTCCCATCTTGTCGTGGAAC 59.998 52.381 0.00 0.00 37.72 3.62
116 117 0.608130 CACTCCCATCTTGTCGTGGA 59.392 55.000 0.00 0.00 37.72 4.02
117 118 1.021390 GCACTCCCATCTTGTCGTGG 61.021 60.000 0.00 0.00 35.22 4.94
118 119 1.021390 GGCACTCCCATCTTGTCGTG 61.021 60.000 0.00 0.00 0.00 4.35
120 121 1.811266 CGGCACTCCCATCTTGTCG 60.811 63.158 0.00 0.00 31.19 4.35
121 122 1.450312 CCGGCACTCCCATCTTGTC 60.450 63.158 0.00 0.00 0.00 3.18
125 126 1.528824 CAATCCGGCACTCCCATCT 59.471 57.895 0.00 0.00 0.00 2.90
127 128 2.124151 GCAATCCGGCACTCCCAT 60.124 61.111 0.00 0.00 0.00 4.00
128 129 2.705312 TTTGCAATCCGGCACTCCCA 62.705 55.000 0.00 0.00 44.86 4.37
129 130 1.531739 TTTTGCAATCCGGCACTCCC 61.532 55.000 0.00 0.00 44.86 4.30
130 131 0.388520 GTTTTGCAATCCGGCACTCC 60.389 55.000 0.00 0.00 44.86 3.85
131 132 0.729140 CGTTTTGCAATCCGGCACTC 60.729 55.000 0.00 0.00 44.86 3.51
133 134 1.732683 CCGTTTTGCAATCCGGCAC 60.733 57.895 20.15 2.83 44.86 5.01
134 135 1.899054 TCCGTTTTGCAATCCGGCA 60.899 52.632 24.72 14.85 43.19 5.69
135 136 1.443702 GTCCGTTTTGCAATCCGGC 60.444 57.895 24.72 18.11 40.23 6.13
137 138 1.984990 CATTGTCCGTTTTGCAATCCG 59.015 47.619 0.00 5.58 0.00 4.18
138 139 2.336667 CCATTGTCCGTTTTGCAATCC 58.663 47.619 0.00 0.00 0.00 3.01
140 141 1.001860 CCCCATTGTCCGTTTTGCAAT 59.998 47.619 0.00 0.00 0.00 3.56
141 142 0.390860 CCCCATTGTCCGTTTTGCAA 59.609 50.000 0.00 0.00 0.00 4.08
143 144 0.676736 TTCCCCATTGTCCGTTTTGC 59.323 50.000 0.00 0.00 0.00 3.68
144 145 3.460857 TTTTCCCCATTGTCCGTTTTG 57.539 42.857 0.00 0.00 0.00 2.44
145 146 3.805457 GCATTTTCCCCATTGTCCGTTTT 60.805 43.478 0.00 0.00 0.00 2.43
146 147 2.289382 GCATTTTCCCCATTGTCCGTTT 60.289 45.455 0.00 0.00 0.00 3.60
147 148 1.275010 GCATTTTCCCCATTGTCCGTT 59.725 47.619 0.00 0.00 0.00 4.44
148 149 0.894835 GCATTTTCCCCATTGTCCGT 59.105 50.000 0.00 0.00 0.00 4.69
149 150 1.134946 GAGCATTTTCCCCATTGTCCG 59.865 52.381 0.00 0.00 0.00 4.79
150 151 1.134946 CGAGCATTTTCCCCATTGTCC 59.865 52.381 0.00 0.00 0.00 4.02
151 152 1.134946 CCGAGCATTTTCCCCATTGTC 59.865 52.381 0.00 0.00 0.00 3.18
152 153 1.185315 CCGAGCATTTTCCCCATTGT 58.815 50.000 0.00 0.00 0.00 2.71
153 154 1.473258 TCCGAGCATTTTCCCCATTG 58.527 50.000 0.00 0.00 0.00 2.82
155 156 1.696063 CATCCGAGCATTTTCCCCAT 58.304 50.000 0.00 0.00 0.00 4.00
156 157 1.037030 GCATCCGAGCATTTTCCCCA 61.037 55.000 0.00 0.00 0.00 4.96
157 158 1.037030 TGCATCCGAGCATTTTCCCC 61.037 55.000 0.00 0.00 40.11 4.81
158 159 2.492418 TGCATCCGAGCATTTTCCC 58.508 52.632 0.00 0.00 40.11 3.97
167 168 1.203928 GTTCGTCTCATGCATCCGAG 58.796 55.000 7.55 7.55 0.00 4.63
168 169 0.530288 TGTTCGTCTCATGCATCCGA 59.470 50.000 0.00 0.00 0.00 4.55
169 170 0.647410 GTGTTCGTCTCATGCATCCG 59.353 55.000 0.00 0.00 0.00 4.18
170 171 0.647410 CGTGTTCGTCTCATGCATCC 59.353 55.000 0.00 0.00 0.00 3.51
178 179 4.020420 GCATTTGCATACGTGTTCGTCTC 61.020 47.826 0.00 0.00 44.39 3.36
179 180 2.159707 GCATTTGCATACGTGTTCGTCT 60.160 45.455 0.00 0.00 44.39 4.18
180 181 2.166007 GCATTTGCATACGTGTTCGTC 58.834 47.619 0.00 0.00 44.39 4.20
193 194 2.933260 TCATCATGTGCATTGCATTTGC 59.067 40.909 15.49 13.65 41.91 3.68
194 195 3.929610 TGTCATCATGTGCATTGCATTTG 59.070 39.130 15.49 14.76 41.91 2.32
195 196 4.195225 TGTCATCATGTGCATTGCATTT 57.805 36.364 15.49 2.46 41.91 2.32
196 197 3.878160 TGTCATCATGTGCATTGCATT 57.122 38.095 15.49 2.84 41.91 3.56
205 206 7.066284 ATGCATCTCATATCATGTCATCATGTG 59.934 37.037 0.00 0.00 41.56 3.21
206 207 7.066284 CATGCATCTCATATCATGTCATCATGT 59.934 37.037 0.00 0.27 41.53 3.21
207 208 7.280876 TCATGCATCTCATATCATGTCATCATG 59.719 37.037 0.00 2.27 41.82 3.07
208 209 7.281100 GTCATGCATCTCATATCATGTCATCAT 59.719 37.037 0.00 0.00 37.95 2.45
209 210 6.594159 GTCATGCATCTCATATCATGTCATCA 59.406 38.462 0.00 0.00 37.95 3.07
210 211 6.594159 TGTCATGCATCTCATATCATGTCATC 59.406 38.462 0.00 0.00 37.95 2.92
212 213 5.860611 TGTCATGCATCTCATATCATGTCA 58.139 37.500 0.00 0.00 37.95 3.58
213 214 6.649557 TCTTGTCATGCATCTCATATCATGTC 59.350 38.462 0.00 0.00 37.95 3.06
214 215 6.531021 TCTTGTCATGCATCTCATATCATGT 58.469 36.000 0.00 0.00 37.95 3.21
215 216 7.041372 TGTTCTTGTCATGCATCTCATATCATG 60.041 37.037 0.00 0.00 38.05 3.07
216 217 6.996282 TGTTCTTGTCATGCATCTCATATCAT 59.004 34.615 0.00 0.00 33.19 2.45
217 218 6.350906 TGTTCTTGTCATGCATCTCATATCA 58.649 36.000 0.00 0.00 33.19 2.15
218 219 6.856135 TGTTCTTGTCATGCATCTCATATC 57.144 37.500 0.00 0.00 33.19 1.63
219 220 7.634671 TTTGTTCTTGTCATGCATCTCATAT 57.365 32.000 0.00 0.00 33.19 1.78
224 225 4.927425 GCATTTTGTTCTTGTCATGCATCT 59.073 37.500 0.00 0.00 34.31 2.90
225 226 4.687018 TGCATTTTGTTCTTGTCATGCATC 59.313 37.500 0.00 0.00 38.64 3.91
226 227 4.633175 TGCATTTTGTTCTTGTCATGCAT 58.367 34.783 0.00 0.00 38.64 3.96
227 228 4.056092 TGCATTTTGTTCTTGTCATGCA 57.944 36.364 0.55 0.55 40.84 3.96
228 229 5.406767 TTTGCATTTTGTTCTTGTCATGC 57.593 34.783 0.00 0.00 0.00 4.06
229 230 5.897518 CGTTTTGCATTTTGTTCTTGTCATG 59.102 36.000 0.00 0.00 0.00 3.07
230 231 5.809562 TCGTTTTGCATTTTGTTCTTGTCAT 59.190 32.000 0.00 0.00 0.00 3.06
232 233 5.694674 TCGTTTTGCATTTTGTTCTTGTC 57.305 34.783 0.00 0.00 0.00 3.18
233 234 6.367422 TCTTTCGTTTTGCATTTTGTTCTTGT 59.633 30.769 0.00 0.00 0.00 3.16
234 235 6.678245 GTCTTTCGTTTTGCATTTTGTTCTTG 59.322 34.615 0.00 0.00 0.00 3.02
235 236 6.367422 TGTCTTTCGTTTTGCATTTTGTTCTT 59.633 30.769 0.00 0.00 0.00 2.52
236 237 5.866633 TGTCTTTCGTTTTGCATTTTGTTCT 59.133 32.000 0.00 0.00 0.00 3.01
237 238 6.088719 TGTCTTTCGTTTTGCATTTTGTTC 57.911 33.333 0.00 0.00 0.00 3.18
238 239 6.473397 TTGTCTTTCGTTTTGCATTTTGTT 57.527 29.167 0.00 0.00 0.00 2.83
240 241 6.248210 GGTTTTGTCTTTCGTTTTGCATTTTG 59.752 34.615 0.00 0.00 0.00 2.44
243 244 4.331443 GGGTTTTGTCTTTCGTTTTGCATT 59.669 37.500 0.00 0.00 0.00 3.56
246 247 2.280445 CGGGTTTTGTCTTTCGTTTTGC 59.720 45.455 0.00 0.00 0.00 3.68
247 248 3.544682 GTCGGGTTTTGTCTTTCGTTTTG 59.455 43.478 0.00 0.00 0.00 2.44
249 250 2.097954 GGTCGGGTTTTGTCTTTCGTTT 59.902 45.455 0.00 0.00 0.00 3.60
250 251 1.672363 GGTCGGGTTTTGTCTTTCGTT 59.328 47.619 0.00 0.00 0.00 3.85
251 252 1.302366 GGTCGGGTTTTGTCTTTCGT 58.698 50.000 0.00 0.00 0.00 3.85
252 253 1.003223 GTGGTCGGGTTTTGTCTTTCG 60.003 52.381 0.00 0.00 0.00 3.46
253 254 1.003223 CGTGGTCGGGTTTTGTCTTTC 60.003 52.381 0.00 0.00 0.00 2.62
254 255 1.018910 CGTGGTCGGGTTTTGTCTTT 58.981 50.000 0.00 0.00 0.00 2.52
257 258 0.584876 CTTCGTGGTCGGGTTTTGTC 59.415 55.000 0.00 0.00 37.69 3.18
259 260 1.512156 CCCTTCGTGGTCGGGTTTTG 61.512 60.000 0.00 0.00 37.69 2.44
261 262 1.698067 TTCCCTTCGTGGTCGGGTTT 61.698 55.000 0.00 0.00 39.10 3.27
262 263 1.486145 ATTCCCTTCGTGGTCGGGTT 61.486 55.000 0.00 0.00 39.10 4.11
264 265 0.756903 ATATTCCCTTCGTGGTCGGG 59.243 55.000 0.00 0.00 39.41 5.14
265 266 1.411246 TGATATTCCCTTCGTGGTCGG 59.589 52.381 0.00 0.00 37.69 4.79
266 267 2.882927 TGATATTCCCTTCGTGGTCG 57.117 50.000 0.00 0.00 38.55 4.79
267 268 5.465724 GTGTTATGATATTCCCTTCGTGGTC 59.534 44.000 0.00 0.00 0.00 4.02
269 270 5.364778 TGTGTTATGATATTCCCTTCGTGG 58.635 41.667 0.00 0.00 0.00 4.94
270 271 6.073058 CCATGTGTTATGATATTCCCTTCGTG 60.073 42.308 0.00 0.00 0.00 4.35
271 272 5.997746 CCATGTGTTATGATATTCCCTTCGT 59.002 40.000 0.00 0.00 0.00 3.85
272 273 5.106555 GCCATGTGTTATGATATTCCCTTCG 60.107 44.000 0.00 0.00 0.00 3.79
273 274 5.183904 GGCCATGTGTTATGATATTCCCTTC 59.816 44.000 0.00 0.00 0.00 3.46
275 276 4.666512 GGCCATGTGTTATGATATTCCCT 58.333 43.478 0.00 0.00 0.00 4.20
276 277 3.440173 CGGCCATGTGTTATGATATTCCC 59.560 47.826 2.24 0.00 0.00 3.97
277 278 4.323417 TCGGCCATGTGTTATGATATTCC 58.677 43.478 2.24 0.00 0.00 3.01
278 279 5.940192 TTCGGCCATGTGTTATGATATTC 57.060 39.130 2.24 0.00 0.00 1.75
279 280 6.707440 TTTTCGGCCATGTGTTATGATATT 57.293 33.333 2.24 0.00 0.00 1.28
280 281 6.294675 CCATTTTCGGCCATGTGTTATGATAT 60.295 38.462 2.24 0.00 0.00 1.63
281 282 5.009510 CCATTTTCGGCCATGTGTTATGATA 59.990 40.000 2.24 0.00 0.00 2.15
284 285 3.446799 CCATTTTCGGCCATGTGTTATG 58.553 45.455 2.24 0.00 0.00 1.90
285 286 3.799281 CCATTTTCGGCCATGTGTTAT 57.201 42.857 2.24 0.00 0.00 1.89
298 299 4.590850 AACTCCAACTCTTGCCATTTTC 57.409 40.909 0.00 0.00 0.00 2.29
299 300 4.892934 TGTAACTCCAACTCTTGCCATTTT 59.107 37.500 0.00 0.00 0.00 1.82
300 301 4.469657 TGTAACTCCAACTCTTGCCATTT 58.530 39.130 0.00 0.00 0.00 2.32
301 302 4.098914 TGTAACTCCAACTCTTGCCATT 57.901 40.909 0.00 0.00 0.00 3.16
303 304 3.569194 TTGTAACTCCAACTCTTGCCA 57.431 42.857 0.00 0.00 0.00 4.92
304 305 6.404734 CCATATTTGTAACTCCAACTCTTGCC 60.405 42.308 0.00 0.00 0.00 4.52
305 306 6.374333 TCCATATTTGTAACTCCAACTCTTGC 59.626 38.462 0.00 0.00 0.00 4.01
306 307 7.921786 TCCATATTTGTAACTCCAACTCTTG 57.078 36.000 0.00 0.00 0.00 3.02
309 310 8.336801 ACTTTCCATATTTGTAACTCCAACTC 57.663 34.615 0.00 0.00 0.00 3.01
311 312 9.836076 GTAACTTTCCATATTTGTAACTCCAAC 57.164 33.333 0.00 0.00 0.00 3.77
312 313 9.575868 TGTAACTTTCCATATTTGTAACTCCAA 57.424 29.630 0.00 0.00 0.00 3.53
317 318 8.126700 CCGGATGTAACTTTCCATATTTGTAAC 58.873 37.037 0.00 0.00 31.99 2.50
319 320 6.768861 CCCGGATGTAACTTTCCATATTTGTA 59.231 38.462 0.73 0.00 31.99 2.41
320 321 5.592688 CCCGGATGTAACTTTCCATATTTGT 59.407 40.000 0.73 0.00 31.99 2.83
322 323 5.137551 CCCCGGATGTAACTTTCCATATTT 58.862 41.667 0.73 0.00 31.99 1.40
323 324 4.167307 ACCCCGGATGTAACTTTCCATATT 59.833 41.667 0.73 0.00 31.99 1.28
324 325 3.720002 ACCCCGGATGTAACTTTCCATAT 59.280 43.478 0.73 0.00 31.99 1.78
325 326 3.116959 ACCCCGGATGTAACTTTCCATA 58.883 45.455 0.73 0.00 31.99 2.74
326 327 1.920351 ACCCCGGATGTAACTTTCCAT 59.080 47.619 0.73 0.00 31.99 3.41
327 328 1.003812 CACCCCGGATGTAACTTTCCA 59.996 52.381 0.73 0.00 31.99 3.53
328 329 1.003928 ACACCCCGGATGTAACTTTCC 59.996 52.381 0.73 0.00 0.00 3.13
329 330 2.484742 ACACCCCGGATGTAACTTTC 57.515 50.000 0.73 0.00 0.00 2.62
333 334 2.289569 TGTGTAACACCCCGGATGTAAC 60.290 50.000 0.73 7.53 45.67 2.50
335 336 1.551430 CTGTGTAACACCCCGGATGTA 59.449 52.381 0.73 0.00 45.67 2.29
337 338 0.392461 CCTGTGTAACACCCCGGATG 60.392 60.000 0.73 2.98 45.67 3.51
338 339 1.559065 CCCTGTGTAACACCCCGGAT 61.559 60.000 0.73 0.00 45.67 4.18
339 340 2.218454 CCCTGTGTAACACCCCGGA 61.218 63.158 0.73 0.00 45.67 5.14
340 341 2.349755 CCCTGTGTAACACCCCGG 59.650 66.667 0.00 0.00 45.67 5.73
342 343 0.250597 GTGACCCTGTGTAACACCCC 60.251 60.000 0.00 0.00 45.67 4.95
343 344 0.250597 GGTGACCCTGTGTAACACCC 60.251 60.000 0.00 0.00 45.67 4.61
344 345 0.763035 AGGTGACCCTGTGTAACACC 59.237 55.000 0.00 0.00 45.67 4.16
372 1194 3.324993 GAGCTCAAGAAGGTGAAGACTG 58.675 50.000 9.40 0.00 35.33 3.51
381 1203 3.979101 AGAAGAAGGAGCTCAAGAAGG 57.021 47.619 17.19 0.00 0.00 3.46
425 1247 0.038310 GACACCCCAAAGGAGGAAGG 59.962 60.000 0.00 0.00 39.89 3.46
427 1249 1.064825 GAGACACCCCAAAGGAGGAA 58.935 55.000 0.00 0.00 39.89 3.36
445 1267 0.250234 ACGCCATCAAGCAGCTAAGA 59.750 50.000 0.00 0.00 0.00 2.10
458 1280 0.606604 AGTACGAAGACCAACGCCAT 59.393 50.000 0.00 0.00 0.00 4.40
477 1299 9.183368 TCACCAAAATATGCTATGTGTCATTAA 57.817 29.630 0.00 0.00 0.00 1.40
506 1328 7.227873 TGAACATGAATGGAACTTGGTTACTA 58.772 34.615 0.00 0.00 0.00 1.82
545 1367 1.341531 ACCGAGGTGAACTCACTCTTG 59.658 52.381 9.60 8.57 46.98 3.02
576 1398 1.882912 ATGACAAAAGCTCGAGCACA 58.117 45.000 36.87 24.28 45.16 4.57
603 1425 2.293955 CACCAACACATCAAGCATCACA 59.706 45.455 0.00 0.00 0.00 3.58
606 1428 3.127548 CCTACACCAACACATCAAGCATC 59.872 47.826 0.00 0.00 0.00 3.91
607 1429 3.084039 CCTACACCAACACATCAAGCAT 58.916 45.455 0.00 0.00 0.00 3.79
618 1440 1.615919 CCCCATGAACCCTACACCAAC 60.616 57.143 0.00 0.00 0.00 3.77
632 1454 0.251033 ATGCGGACATCATCCCCATG 60.251 55.000 0.00 0.00 43.28 3.66
645 1467 2.683362 CACTACACTACTCTGATGCGGA 59.317 50.000 0.00 0.00 0.00 5.54
646 1468 2.796383 GCACTACACTACTCTGATGCGG 60.796 54.545 0.00 0.00 0.00 5.69
647 1469 2.098280 AGCACTACACTACTCTGATGCG 59.902 50.000 0.00 0.00 36.93 4.73
677 1508 2.180751 ACCAGGACGGGGGTAGTATATT 59.819 50.000 0.00 0.00 40.22 1.28
688 1519 1.093496 GGCGAATAAACCAGGACGGG 61.093 60.000 0.00 0.00 40.22 5.28
689 1520 1.093496 GGGCGAATAAACCAGGACGG 61.093 60.000 0.00 0.00 42.50 4.79
690 1521 1.093496 GGGGCGAATAAACCAGGACG 61.093 60.000 0.00 0.00 0.00 4.79
694 1525 2.721425 TAAGGGGGCGAATAAACCAG 57.279 50.000 0.00 0.00 0.00 4.00
704 1535 3.697045 TGACACAAAATAATAAGGGGGCG 59.303 43.478 0.00 0.00 0.00 6.13
878 1731 3.695556 GGAGTACTACCTCTGTCTTGGTC 59.304 52.174 0.00 0.00 37.74 4.02
883 1736 4.274147 CACATGGAGTACTACCTCTGTCT 58.726 47.826 1.66 0.00 0.00 3.41
887 1740 3.101643 TGCACATGGAGTACTACCTCT 57.898 47.619 1.66 0.00 0.00 3.69
941 1875 5.169561 GTGTTCGCTGTTTATATTGCAATCG 59.830 40.000 16.86 10.73 0.00 3.34
957 1891 3.352338 GATCCGTCCGGTGTTCGCT 62.352 63.158 0.00 0.00 37.59 4.93
959 1893 2.202703 GGATCCGTCCGGTGTTCG 60.203 66.667 0.00 2.70 34.13 3.95
1008 1944 8.265108 TCTACCTTAGATCTCTCTAGCAGTTA 57.735 38.462 0.00 0.00 35.43 2.24
1014 1950 6.071560 TCGCTCTCTACCTTAGATCTCTCTAG 60.072 46.154 0.00 0.00 35.43 2.43
1068 2005 4.717629 TCCGTCCGCGTGCTTCTG 62.718 66.667 4.92 0.00 36.15 3.02
1069 2006 4.421479 CTCCGTCCGCGTGCTTCT 62.421 66.667 4.92 0.00 36.15 2.85
1078 2015 4.477975 GACGAGGTGCTCCGTCCG 62.478 72.222 13.06 13.06 46.54 4.79
1106 2043 0.110295 TGGCGGGATGGATTGTATGG 59.890 55.000 0.00 0.00 0.00 2.74
1107 2044 1.814394 CATGGCGGGATGGATTGTATG 59.186 52.381 0.00 0.00 0.00 2.39
1108 2045 1.272092 CCATGGCGGGATGGATTGTAT 60.272 52.381 0.00 0.00 45.24 2.29
1109 2046 0.110295 CCATGGCGGGATGGATTGTA 59.890 55.000 0.00 0.00 45.24 2.41
1110 2047 1.152694 CCATGGCGGGATGGATTGT 60.153 57.895 0.00 0.00 45.24 2.71
1111 2048 3.767816 CCATGGCGGGATGGATTG 58.232 61.111 0.00 0.00 45.24 2.67
1120 2057 3.497884 GAATCCCTCCCCATGGCGG 62.498 68.421 6.09 9.67 36.16 6.13
1121 2058 2.113986 GAATCCCTCCCCATGGCG 59.886 66.667 6.09 0.00 0.00 5.69
1122 2059 2.113986 CGAATCCCTCCCCATGGC 59.886 66.667 6.09 0.00 0.00 4.40
1156 2283 1.221293 GAGGAGACGAGGAGGACGA 59.779 63.158 0.00 0.00 34.70 4.20
1190 2317 1.212616 CGTCCTCATCGGCAGATTTC 58.787 55.000 0.00 0.00 34.23 2.17
1220 2347 1.282875 GGACAACAACTTGGCGAGC 59.717 57.895 0.37 0.00 36.05 5.03
1317 2444 2.732619 GGTCGATGGAGGTGACCCC 61.733 68.421 0.00 0.00 45.14 4.95
1658 2785 2.427506 GATGAAAGGTTGGCGAGAACT 58.572 47.619 0.00 0.00 0.00 3.01
1673 2800 1.402852 CGCAGAGACCTCAACGATGAA 60.403 52.381 0.00 0.00 34.49 2.57
1781 2908 0.250234 CTGACAGCTTCCCATCCGAA 59.750 55.000 0.00 0.00 0.00 4.30
2590 3717 4.285517 ACTTCTCTGCATTCTTCTTCCTCA 59.714 41.667 0.00 0.00 0.00 3.86
2635 3762 4.650131 TCATCTCAGATTCATCAGCAGACT 59.350 41.667 0.00 0.00 0.00 3.24
3058 4185 2.945510 TGCTCACGCAATGTTCCAT 58.054 47.368 0.00 0.00 44.62 3.41
3155 4282 5.266709 AGCCATGCAAATATTCTATCCCT 57.733 39.130 0.00 0.00 0.00 4.20
3290 4417 5.047872 CACCCTTGTCATCATTGATTTGTCA 60.048 40.000 0.00 0.00 33.56 3.58
3432 4559 4.755123 CACTCCCGAAAAAGAGTAACATGT 59.245 41.667 0.00 0.00 41.38 3.21
3579 4706 0.251073 TTCTAAGTGGTAAGGCGCCC 59.749 55.000 26.15 8.39 0.00 6.13
3725 4852 5.362430 AGTGAAAACTTATGCCCAGAACAAA 59.638 36.000 0.00 0.00 0.00 2.83
3906 5035 4.441415 CAGCGTCCGTATTAGAATCTGTTC 59.559 45.833 0.00 0.00 34.46 3.18
4085 5215 0.319555 TCGTTTCAGCTTGAGGACGG 60.320 55.000 16.21 0.00 37.90 4.79
4174 5343 3.334691 CCGAGTGAAGCATTTCCTTGTA 58.665 45.455 0.00 0.00 32.09 2.41
4232 5401 0.818296 GAGGATAGTCGTGTGGTGCT 59.182 55.000 0.00 0.00 0.00 4.40
4239 5408 1.491670 CGCCATTGAGGATAGTCGTG 58.508 55.000 0.00 0.00 41.22 4.35
4245 5414 0.399949 ACTCCCCGCCATTGAGGATA 60.400 55.000 0.00 0.00 41.22 2.59
4248 5417 1.276421 CTATACTCCCCGCCATTGAGG 59.724 57.143 0.00 0.00 41.84 3.86
4412 8007 4.082136 GGTTGTTGTTGTTGTTGTTAGGGA 60.082 41.667 0.00 0.00 0.00 4.20
4413 8008 4.177783 GGTTGTTGTTGTTGTTGTTAGGG 58.822 43.478 0.00 0.00 0.00 3.53
4414 8009 4.623595 GTGGTTGTTGTTGTTGTTGTTAGG 59.376 41.667 0.00 0.00 0.00 2.69
4415 8010 5.223382 TGTGGTTGTTGTTGTTGTTGTTAG 58.777 37.500 0.00 0.00 0.00 2.34
4416 8011 5.196341 TGTGGTTGTTGTTGTTGTTGTTA 57.804 34.783 0.00 0.00 0.00 2.41
4417 8012 4.060038 TGTGGTTGTTGTTGTTGTTGTT 57.940 36.364 0.00 0.00 0.00 2.83
4418 8013 3.735237 TGTGGTTGTTGTTGTTGTTGT 57.265 38.095 0.00 0.00 0.00 3.32
4419 8014 4.610231 GCTTTGTGGTTGTTGTTGTTGTTG 60.610 41.667 0.00 0.00 0.00 3.33
4420 8015 3.496507 GCTTTGTGGTTGTTGTTGTTGTT 59.503 39.130 0.00 0.00 0.00 2.83
4421 8016 3.063485 GCTTTGTGGTTGTTGTTGTTGT 58.937 40.909 0.00 0.00 0.00 3.32
4422 8017 2.414825 GGCTTTGTGGTTGTTGTTGTTG 59.585 45.455 0.00 0.00 0.00 3.33
4423 8018 2.301583 AGGCTTTGTGGTTGTTGTTGTT 59.698 40.909 0.00 0.00 0.00 2.83
4424 8019 1.899142 AGGCTTTGTGGTTGTTGTTGT 59.101 42.857 0.00 0.00 0.00 3.32
4425 8020 2.671130 AGGCTTTGTGGTTGTTGTTG 57.329 45.000 0.00 0.00 0.00 3.33
4426 8021 3.694043 AAAGGCTTTGTGGTTGTTGTT 57.306 38.095 12.53 0.00 0.00 2.83
4427 8022 3.767131 ACTAAAGGCTTTGTGGTTGTTGT 59.233 39.130 22.32 0.00 0.00 3.32
4428 8023 4.359706 GACTAAAGGCTTTGTGGTTGTTG 58.640 43.478 22.32 0.00 0.00 3.33
4429 8024 3.383505 GGACTAAAGGCTTTGTGGTTGTT 59.616 43.478 22.32 0.00 0.00 2.83
4430 8025 2.956333 GGACTAAAGGCTTTGTGGTTGT 59.044 45.455 22.32 10.58 0.00 3.32
4431 8026 2.296190 GGGACTAAAGGCTTTGTGGTTG 59.704 50.000 22.32 7.79 0.00 3.77
4432 8027 2.091555 TGGGACTAAAGGCTTTGTGGTT 60.092 45.455 22.32 1.84 0.00 3.67
4433 8028 1.497286 TGGGACTAAAGGCTTTGTGGT 59.503 47.619 22.32 16.61 0.00 4.16
4434 8029 2.286365 TGGGACTAAAGGCTTTGTGG 57.714 50.000 22.32 13.79 0.00 4.17
4435 8030 3.383185 TGTTTGGGACTAAAGGCTTTGTG 59.617 43.478 22.32 16.15 0.00 3.33
4436 8031 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
4437 8032 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
4438 8033 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
4495 8090 5.653769 CCCCTATGTGACATGAGTTGAATTT 59.346 40.000 8.61 0.00 0.00 1.82
4498 8093 3.587061 ACCCCTATGTGACATGAGTTGAA 59.413 43.478 8.61 0.00 0.00 2.69
4510 8105 4.640201 CACTATCCAAACAACCCCTATGTG 59.360 45.833 0.00 0.00 0.00 3.21
4511 8106 4.538490 TCACTATCCAAACAACCCCTATGT 59.462 41.667 0.00 0.00 0.00 2.29
4512 8107 5.104527 TCTCACTATCCAAACAACCCCTATG 60.105 44.000 0.00 0.00 0.00 2.23
4513 8108 5.036916 TCTCACTATCCAAACAACCCCTAT 58.963 41.667 0.00 0.00 0.00 2.57
4539 8135 7.348201 GTGTTTATGCAAATCGGATTCTCTAG 58.652 38.462 3.28 0.00 0.00 2.43
4549 8145 5.794945 ACTGAAATCGTGTTTATGCAAATCG 59.205 36.000 0.00 0.00 0.00 3.34
4579 8175 4.837860 TGATCCAAACATGGTTTTAGGCTT 59.162 37.500 0.00 0.00 0.00 4.35
4592 8188 7.339212 CCATGGTTTAGTTAGATGATCCAAACA 59.661 37.037 2.57 0.00 0.00 2.83
4654 8250 6.861065 ATGACTCGTTTTTCTAAAAGCTCA 57.139 33.333 0.00 0.00 0.00 4.26
4771 8372 3.127081 TGTACTACGAAGATGACGTGC 57.873 47.619 0.00 0.00 43.73 5.34
4784 8385 2.798499 CGTGGCCACTAGCATGTACTAC 60.798 54.545 32.28 2.02 46.50 2.73
4836 8520 1.537348 GGCCATTAGCATGTACGACGA 60.537 52.381 0.00 0.00 46.50 4.20
4891 8575 4.708726 ACAAGCTCAATCTTACCATTGC 57.291 40.909 0.00 0.00 34.26 3.56
4901 8585 1.739466 TCGATGCCAACAAGCTCAATC 59.261 47.619 0.00 0.00 0.00 2.67
5112 8801 1.146358 GAACGAGCACGGGAGCATAC 61.146 60.000 8.74 0.00 44.46 2.39
5143 8832 4.998672 CACAAAAATGGCTTCCATGTTGAT 59.001 37.500 20.39 5.03 44.40 2.57
5265 8986 2.291475 ACTCTCTCTGCTGATCACCTCA 60.291 50.000 0.00 0.00 0.00 3.86
5270 8991 2.101082 GCATGACTCTCTCTGCTGATCA 59.899 50.000 0.00 0.00 0.00 2.92
5696 11289 4.877378 ATACGTGACAGAGTTTGGGTAA 57.123 40.909 0.00 0.00 0.00 2.85
6353 12293 8.492673 TGTACCAAAATAGATGACATTCAGAC 57.507 34.615 0.00 0.00 0.00 3.51
6384 12324 7.456269 AGGAGGGAAAGTACATTCAGATATAGG 59.544 40.741 12.51 0.00 0.00 2.57
6717 12657 2.281692 TCGTGCTGTGCAATGCCT 60.282 55.556 1.53 0.00 41.47 4.75
7040 12980 4.498520 ATGTCGACCTCCGCTGCG 62.499 66.667 16.34 16.34 38.37 5.18
7256 13197 7.733773 TCTCTAGACCATCCAAGAACAAATA 57.266 36.000 0.00 0.00 0.00 1.40
7299 13240 0.040958 CTTGTGGACGCTTGCTTCAC 60.041 55.000 1.76 3.07 0.00 3.18
7333 13274 5.615925 AACGCCTCTACATCCTAGAAAAT 57.384 39.130 0.00 0.00 0.00 1.82
7350 13291 3.118884 TGTTCTACATCCTAGGAAACGCC 60.119 47.826 17.30 1.60 0.00 5.68
7357 13298 6.710744 ACAAAACAACTGTTCTACATCCTAGG 59.289 38.462 0.82 0.82 37.25 3.02
7408 13351 4.319333 CCATTTAGCATTTTTGCACGCAAA 60.319 37.500 12.98 12.98 43.23 3.68
7439 13382 8.477419 TTTCAAAATTAAGGCCTATATGGAGG 57.523 34.615 5.16 0.00 39.88 4.30
7512 13455 9.959749 TCTTGAAAATTTAAACACATGTAGGTC 57.040 29.630 0.00 0.00 0.00 3.85
7546 13502 9.862371 TTTCTTTGTGTAGCTTTCATTTTAACA 57.138 25.926 0.00 0.00 0.00 2.41
7576 13532 5.182487 TGTGCTAAAAAGCCATAGAATCGA 58.818 37.500 0.00 0.00 0.00 3.59
7578 13534 6.799512 ACATGTGCTAAAAAGCCATAGAATC 58.200 36.000 0.00 0.00 0.00 2.52
7755 13712 9.933723 CTCCATGAAGGTCTTAATTTTGAAAAT 57.066 29.630 0.00 0.00 39.02 1.82
7815 13772 6.892456 TCAGCCACATACACCCAATTATAAAA 59.108 34.615 0.00 0.00 0.00 1.52
7834 13791 2.224018 GGAAGCACACAAATTTCAGCCA 60.224 45.455 0.00 0.00 0.00 4.75
7892 13849 1.471119 ACTCATCGAACCTAAGGCGA 58.529 50.000 0.00 0.00 38.51 5.54
7904 13862 1.671979 ATGATGCCACCAACTCATCG 58.328 50.000 0.00 0.00 39.42 3.84
8151 14138 4.767578 AGTGAGCTGGTCATTCATGTAT 57.232 40.909 13.18 0.00 37.56 2.29
8152 14139 4.223700 AGAAGTGAGCTGGTCATTCATGTA 59.776 41.667 22.05 0.00 37.56 2.29
8166 14153 9.364989 GAGTTATGGATATATTCAGAAGTGAGC 57.635 37.037 12.52 0.00 32.98 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.