Multiple sequence alignment - TraesCS4D01G161900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G161900 chr4D 100.000 4105 0 0 1 4105 244614137 244610033 0.000000e+00 7581.0
1 TraesCS4D01G161900 chr4D 100.000 1390 0 0 4432 5821 244609706 244608317 0.000000e+00 2567.0
2 TraesCS4D01G161900 chr4D 89.412 425 30 10 1787 2200 430818076 430817656 6.680000e-144 521.0
3 TraesCS4D01G161900 chr4D 79.372 446 66 15 2366 2788 242939520 242939962 2.050000e-74 291.0
4 TraesCS4D01G161900 chr4D 93.069 101 5 1 243 343 244613796 244613698 4.700000e-31 147.0
5 TraesCS4D01G161900 chr4D 93.069 101 5 1 342 440 244613895 244613795 4.700000e-31 147.0
6 TraesCS4D01G161900 chr4A 97.324 1906 44 5 2203 4105 389991018 389989117 0.000000e+00 3230.0
7 TraesCS4D01G161900 chr4A 94.220 1384 50 15 4432 5790 389989094 389987716 0.000000e+00 2085.0
8 TraesCS4D01G161900 chr4A 94.425 574 10 4 486 1057 389992203 389991650 0.000000e+00 863.0
9 TraesCS4D01G161900 chr4A 94.953 317 12 4 1444 1757 389991338 389991023 1.460000e-135 494.0
10 TraesCS4D01G161900 chr4A 96.364 275 10 0 1043 1317 389991611 389991337 2.470000e-123 453.0
11 TraesCS4D01G161900 chr4A 79.186 442 66 15 2372 2791 237096594 237096157 3.430000e-72 283.0
12 TraesCS4D01G161900 chr4B 94.400 1607 42 22 1444 3038 252980877 252979307 0.000000e+00 2425.0
13 TraesCS4D01G161900 chr4B 94.889 1350 39 12 4478 5821 252977788 252976463 0.000000e+00 2084.0
14 TraesCS4D01G161900 chr4B 98.043 1073 19 2 3035 4105 252979227 252978155 0.000000e+00 1864.0
15 TraesCS4D01G161900 chr4B 98.250 857 14 1 461 1317 252981731 252980876 0.000000e+00 1498.0
16 TraesCS4D01G161900 chr4B 90.214 327 28 2 9 331 253013737 253013411 1.940000e-114 424.0
17 TraesCS4D01G161900 chr4B 79.596 446 65 15 2366 2788 300802222 300802664 4.410000e-76 296.0
18 TraesCS4D01G161900 chr4B 96.350 137 4 1 1314 1450 105342448 105342313 2.110000e-54 224.0
19 TraesCS4D01G161900 chr4B 92.593 54 2 2 1181 1233 252980959 252980907 6.250000e-10 76.8
20 TraesCS4D01G161900 chr3D 87.147 708 67 15 2205 2895 395032092 395031392 0.000000e+00 782.0
21 TraesCS4D01G161900 chr3D 89.671 426 29 10 1787 2201 372625437 372625016 3.990000e-146 529.0
22 TraesCS4D01G161900 chr3D 96.377 138 4 1 1307 1443 363249458 363249321 5.870000e-55 226.0
23 TraesCS4D01G161900 chr3D 84.431 167 19 7 1069 1233 395032503 395032342 2.170000e-34 158.0
24 TraesCS4D01G161900 chr3A 86.723 708 70 15 2205 2895 514452976 514452276 0.000000e+00 765.0
25 TraesCS4D01G161900 chr3A 92.000 150 12 0 1314 1463 234955475 234955624 1.640000e-50 211.0
26 TraesCS4D01G161900 chr3A 90.345 145 12 2 1316 1460 727258018 727257876 7.700000e-44 189.0
27 TraesCS4D01G161900 chr3A 90.278 144 12 2 1314 1456 412827662 412827804 2.770000e-43 187.0
28 TraesCS4D01G161900 chr1D 89.376 433 27 14 1784 2201 460919097 460919525 1.440000e-145 527.0
29 TraesCS4D01G161900 chr1D 87.765 425 34 10 1790 2201 412073443 412073024 1.130000e-131 481.0
30 TraesCS4D01G161900 chr1D 87.351 419 37 11 1793 2200 42954798 42955211 3.180000e-127 466.0
31 TraesCS4D01G161900 chr1D 97.710 131 3 0 1312 1442 228800255 228800385 5.870000e-55 226.0
32 TraesCS4D01G161900 chr1D 97.037 135 3 1 1313 1446 256545759 256545625 5.870000e-55 226.0
33 TraesCS4D01G161900 chr1D 83.019 106 12 4 16 116 478256450 478256554 2.230000e-14 91.6
34 TraesCS4D01G161900 chr7D 89.744 390 32 6 1818 2201 630308302 630307915 5.240000e-135 492.0
35 TraesCS4D01G161900 chr7D 88.974 390 33 8 1818 2200 581389596 581389210 1.900000e-129 473.0
36 TraesCS4D01G161900 chr7B 88.889 378 34 7 1827 2200 611493908 611494281 5.320000e-125 459.0
37 TraesCS4D01G161900 chr7B 96.947 131 4 0 1313 1443 440630758 440630888 2.730000e-53 220.0
38 TraesCS4D01G161900 chr7B 85.567 97 9 4 25 116 693642317 693642413 4.800000e-16 97.1
39 TraesCS4D01G161900 chr1A 97.692 130 3 0 1316 1445 354945794 354945665 2.110000e-54 224.0
40 TraesCS4D01G161900 chr1A 93.103 145 9 1 1303 1446 311814224 311814080 1.640000e-50 211.0
41 TraesCS4D01G161900 chr1A 89.583 144 10 5 1314 1455 213289390 213289530 1.670000e-40 178.0
42 TraesCS4D01G161900 chr1A 100.000 28 0 0 5666 5693 136959125 136959152 1.100000e-02 52.8
43 TraesCS4D01G161900 chr1B 96.296 135 4 1 1313 1447 369255998 369256131 2.730000e-53 220.0
44 TraesCS4D01G161900 chr1B 100.000 28 0 0 5666 5693 188464622 188464649 1.100000e-02 52.8
45 TraesCS4D01G161900 chr3B 92.908 141 10 0 1315 1455 542135316 542135456 7.650000e-49 206.0
46 TraesCS4D01G161900 chr2A 90.604 149 13 1 1316 1464 743325160 743325307 4.600000e-46 196.0
47 TraesCS4D01G161900 chr2A 83.810 105 10 6 22 119 77795275 77795171 6.210000e-15 93.5
48 TraesCS4D01G161900 chr2A 100.000 28 0 0 5666 5693 14992526 14992553 1.100000e-02 52.8
49 TraesCS4D01G161900 chr7A 90.476 147 12 2 1313 1459 39319180 39319324 5.950000e-45 193.0
50 TraesCS4D01G161900 chr5B 89.655 145 13 2 1314 1457 598032937 598032794 3.580000e-42 183.0
51 TraesCS4D01G161900 chr5B 84.536 97 10 3 25 116 14707724 14707820 2.230000e-14 91.6
52 TraesCS4D01G161900 chr2B 89.655 145 12 3 1316 1459 21749582 21749440 1.290000e-41 182.0
53 TraesCS4D01G161900 chr2B 85.185 108 9 5 25 126 629108629 629108523 2.870000e-18 104.0
54 TraesCS4D01G161900 chr2B 84.466 103 8 6 21 116 607551397 607551498 1.730000e-15 95.3
55 TraesCS4D01G161900 chr2B 83.333 102 11 4 25 120 645303919 645303818 8.030000e-14 89.8
56 TraesCS4D01G161900 chr6B 84.848 99 10 3 23 116 113454844 113454746 1.730000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G161900 chr4D 244608317 244614137 5820 True 2610.50 7581 96.5345 1 5821 4 chr4D.!!$R2 5820
1 TraesCS4D01G161900 chr4A 389987716 389992203 4487 True 1425.00 3230 95.4572 486 5790 5 chr4A.!!$R2 5304
2 TraesCS4D01G161900 chr4B 252976463 252981731 5268 True 1589.56 2425 95.6350 461 5821 5 chr4B.!!$R3 5360
3 TraesCS4D01G161900 chr3D 395031392 395032503 1111 True 470.00 782 85.7890 1069 2895 2 chr3D.!!$R3 1826
4 TraesCS4D01G161900 chr3A 514452276 514452976 700 True 765.00 765 86.7230 2205 2895 1 chr3A.!!$R1 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.108281 GGAACGGAGGGAGTAGTTGC 60.108 60.000 0.00 0.00 0.00 4.17 F
1331 1394 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55 F
1332 1395 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30 F
2011 2088 1.061033 ACTAATCATCCTCCCAGGCCT 60.061 52.381 0.00 0.00 34.61 5.19 F
2019 2096 1.188863 CCTCCCAGGCCTTGAATTTG 58.811 55.000 0.00 0.00 0.00 2.32 F
2194 2272 2.342279 CCGAGAGCCAAACGTCCA 59.658 61.111 0.00 0.00 0.00 4.02 F
3316 3490 2.685897 GTGAGGCTACTACCAGTGAGAG 59.314 54.545 0.00 0.00 0.00 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1424 1487 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.0 0.00 4.30 R
2194 2272 0.033796 CATGTGTGGGCTGGGAGAAT 60.034 55.000 0.00 0.0 0.00 2.40 R
2245 2323 5.198207 TCGTTGTGATCCACTATCCTTAGA 58.802 41.667 0.00 0.0 35.11 2.10 R
3745 3922 1.963515 GAACACCATGGAGGCAAAACT 59.036 47.619 21.47 0.0 43.14 2.66 R
3997 4175 3.055891 GGTTGCAACAAAATATGGCCTCT 60.056 43.478 29.55 0.0 0.00 3.69 R
4449 4627 9.846248 GCATGAATAGGAATACAACCAAATATC 57.154 33.333 0.00 0.0 0.00 1.63 R
5329 5508 0.746923 CAGGCAGCAGCATAGAAGCA 60.747 55.000 2.65 0.0 44.61 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.752661 GGTGACGTATTTTTGCCACTAA 57.247 40.909 0.00 0.00 0.00 2.24
22 23 5.305139 GGTGACGTATTTTTGCCACTAAT 57.695 39.130 0.00 0.00 0.00 1.73
23 24 6.425577 GGTGACGTATTTTTGCCACTAATA 57.574 37.500 0.00 0.00 0.00 0.98
24 25 7.023197 GGTGACGTATTTTTGCCACTAATAT 57.977 36.000 0.00 0.00 0.00 1.28
25 26 8.145316 GGTGACGTATTTTTGCCACTAATATA 57.855 34.615 0.00 0.00 0.00 0.86
26 27 8.066000 GGTGACGTATTTTTGCCACTAATATAC 58.934 37.037 0.00 0.00 0.00 1.47
27 28 8.823818 GTGACGTATTTTTGCCACTAATATACT 58.176 33.333 0.00 0.00 0.00 2.12
28 29 9.037737 TGACGTATTTTTGCCACTAATATACTC 57.962 33.333 0.00 0.00 0.00 2.59
29 30 8.374327 ACGTATTTTTGCCACTAATATACTCC 57.626 34.615 0.00 0.00 0.00 3.85
30 31 7.443272 ACGTATTTTTGCCACTAATATACTCCC 59.557 37.037 0.00 0.00 0.00 4.30
31 32 7.660208 CGTATTTTTGCCACTAATATACTCCCT 59.340 37.037 0.00 0.00 0.00 4.20
32 33 9.000486 GTATTTTTGCCACTAATATACTCCCTC 58.000 37.037 0.00 0.00 0.00 4.30
33 34 4.866508 TTGCCACTAATATACTCCCTCG 57.133 45.455 0.00 0.00 0.00 4.63
34 35 3.840991 TGCCACTAATATACTCCCTCGT 58.159 45.455 0.00 0.00 0.00 4.18
35 36 4.220724 TGCCACTAATATACTCCCTCGTT 58.779 43.478 0.00 0.00 0.00 3.85
36 37 4.652421 TGCCACTAATATACTCCCTCGTTT 59.348 41.667 0.00 0.00 0.00 3.60
37 38 5.221382 TGCCACTAATATACTCCCTCGTTTC 60.221 44.000 0.00 0.00 0.00 2.78
38 39 5.221382 GCCACTAATATACTCCCTCGTTTCA 60.221 44.000 0.00 0.00 0.00 2.69
39 40 6.684613 GCCACTAATATACTCCCTCGTTTCAA 60.685 42.308 0.00 0.00 0.00 2.69
40 41 7.270047 CCACTAATATACTCCCTCGTTTCAAA 58.730 38.462 0.00 0.00 0.00 2.69
41 42 7.767198 CCACTAATATACTCCCTCGTTTCAAAA 59.233 37.037 0.00 0.00 0.00 2.44
42 43 9.326413 CACTAATATACTCCCTCGTTTCAAAAT 57.674 33.333 0.00 0.00 0.00 1.82
43 44 9.543783 ACTAATATACTCCCTCGTTTCAAAATC 57.456 33.333 0.00 0.00 0.00 2.17
44 45 9.542462 CTAATATACTCCCTCGTTTCAAAATCA 57.458 33.333 0.00 0.00 0.00 2.57
45 46 8.438676 AATATACTCCCTCGTTTCAAAATCAG 57.561 34.615 0.00 0.00 0.00 2.90
46 47 4.086706 ACTCCCTCGTTTCAAAATCAGT 57.913 40.909 0.00 0.00 0.00 3.41
47 48 3.815401 ACTCCCTCGTTTCAAAATCAGTG 59.185 43.478 0.00 0.00 0.00 3.66
48 49 3.815401 CTCCCTCGTTTCAAAATCAGTGT 59.185 43.478 0.00 0.00 0.00 3.55
49 50 3.813166 TCCCTCGTTTCAAAATCAGTGTC 59.187 43.478 0.00 0.00 0.00 3.67
50 51 3.815401 CCCTCGTTTCAAAATCAGTGTCT 59.185 43.478 0.00 0.00 0.00 3.41
51 52 4.083802 CCCTCGTTTCAAAATCAGTGTCTC 60.084 45.833 0.00 0.00 0.00 3.36
52 53 4.511454 CCTCGTTTCAAAATCAGTGTCTCA 59.489 41.667 0.00 0.00 0.00 3.27
53 54 5.007626 CCTCGTTTCAAAATCAGTGTCTCAA 59.992 40.000 0.00 0.00 0.00 3.02
54 55 5.806286 TCGTTTCAAAATCAGTGTCTCAAC 58.194 37.500 0.00 0.00 0.00 3.18
55 56 5.584649 TCGTTTCAAAATCAGTGTCTCAACT 59.415 36.000 0.00 0.00 0.00 3.16
56 57 6.093495 TCGTTTCAAAATCAGTGTCTCAACTT 59.907 34.615 0.00 0.00 0.00 2.66
57 58 6.747280 CGTTTCAAAATCAGTGTCTCAACTTT 59.253 34.615 0.00 0.00 0.00 2.66
58 59 7.273381 CGTTTCAAAATCAGTGTCTCAACTTTT 59.727 33.333 0.00 0.00 0.00 2.27
59 60 8.925700 GTTTCAAAATCAGTGTCTCAACTTTTT 58.074 29.630 0.00 0.00 0.00 1.94
61 62 9.567848 TTCAAAATCAGTGTCTCAACTTTTTAC 57.432 29.630 0.00 0.00 0.00 2.01
62 63 8.956426 TCAAAATCAGTGTCTCAACTTTTTACT 58.044 29.630 0.00 0.00 0.00 2.24
66 67 9.614792 AATCAGTGTCTCAACTTTTTACTAACT 57.385 29.630 0.00 0.00 0.00 2.24
67 68 9.614792 ATCAGTGTCTCAACTTTTTACTAACTT 57.385 29.630 0.00 0.00 0.00 2.66
68 69 9.444600 TCAGTGTCTCAACTTTTTACTAACTTT 57.555 29.630 0.00 0.00 0.00 2.66
85 86 8.363761 ACTAACTTTAGTACAGAGCATAAGGT 57.636 34.615 0.00 0.00 41.92 3.50
86 87 8.813951 ACTAACTTTAGTACAGAGCATAAGGTT 58.186 33.333 0.00 0.00 41.92 3.50
89 90 9.654663 AACTTTAGTACAGAGCATAAGGTTAAG 57.345 33.333 0.00 0.00 29.08 1.85
90 91 9.032624 ACTTTAGTACAGAGCATAAGGTTAAGA 57.967 33.333 0.00 0.00 0.00 2.10
91 92 9.303537 CTTTAGTACAGAGCATAAGGTTAAGAC 57.696 37.037 0.00 0.00 0.00 3.01
92 93 6.852420 AGTACAGAGCATAAGGTTAAGACA 57.148 37.500 0.00 0.00 0.00 3.41
93 94 7.425224 AGTACAGAGCATAAGGTTAAGACAT 57.575 36.000 0.00 0.00 0.00 3.06
94 95 7.852263 AGTACAGAGCATAAGGTTAAGACATT 58.148 34.615 0.00 0.00 33.77 2.71
95 96 8.322091 AGTACAGAGCATAAGGTTAAGACATTT 58.678 33.333 0.00 0.00 31.38 2.32
96 97 9.595823 GTACAGAGCATAAGGTTAAGACATTTA 57.404 33.333 0.00 0.00 31.38 1.40
98 99 9.686683 ACAGAGCATAAGGTTAAGACATTTATT 57.313 29.630 0.00 0.00 31.38 1.40
107 108 7.599171 AGGTTAAGACATTTATTTTGGAACGG 58.401 34.615 0.00 0.00 0.00 4.44
108 109 7.449086 AGGTTAAGACATTTATTTTGGAACGGA 59.551 33.333 0.00 0.00 0.00 4.69
109 110 7.753580 GGTTAAGACATTTATTTTGGAACGGAG 59.246 37.037 0.00 0.00 0.00 4.63
110 111 5.897377 AGACATTTATTTTGGAACGGAGG 57.103 39.130 0.00 0.00 0.00 4.30
111 112 4.705023 AGACATTTATTTTGGAACGGAGGG 59.295 41.667 0.00 0.00 0.00 4.30
112 113 4.668636 ACATTTATTTTGGAACGGAGGGA 58.331 39.130 0.00 0.00 0.00 4.20
113 114 4.705023 ACATTTATTTTGGAACGGAGGGAG 59.295 41.667 0.00 0.00 0.00 4.30
114 115 4.376225 TTTATTTTGGAACGGAGGGAGT 57.624 40.909 0.00 0.00 0.00 3.85
115 116 5.502089 TTTATTTTGGAACGGAGGGAGTA 57.498 39.130 0.00 0.00 0.00 2.59
116 117 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
117 118 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
118 119 2.019807 TTGGAACGGAGGGAGTAGTT 57.980 50.000 0.00 0.00 0.00 2.24
119 120 1.263356 TGGAACGGAGGGAGTAGTTG 58.737 55.000 0.00 0.00 0.00 3.16
120 121 0.108281 GGAACGGAGGGAGTAGTTGC 60.108 60.000 0.00 0.00 0.00 4.17
121 122 0.896226 GAACGGAGGGAGTAGTTGCT 59.104 55.000 0.00 0.00 0.00 3.91
122 123 2.097825 GAACGGAGGGAGTAGTTGCTA 58.902 52.381 0.00 0.00 0.00 3.49
123 124 2.226962 ACGGAGGGAGTAGTTGCTAA 57.773 50.000 0.00 0.00 0.00 3.09
124 125 2.748388 ACGGAGGGAGTAGTTGCTAAT 58.252 47.619 0.00 0.00 0.00 1.73
125 126 3.105283 ACGGAGGGAGTAGTTGCTAATT 58.895 45.455 0.00 0.00 0.00 1.40
126 127 4.284178 ACGGAGGGAGTAGTTGCTAATTA 58.716 43.478 0.00 0.00 0.00 1.40
127 128 4.900054 ACGGAGGGAGTAGTTGCTAATTAT 59.100 41.667 0.00 0.00 0.00 1.28
128 129 5.221461 ACGGAGGGAGTAGTTGCTAATTATG 60.221 44.000 0.00 0.00 0.00 1.90
129 130 5.221461 CGGAGGGAGTAGTTGCTAATTATGT 60.221 44.000 0.00 0.00 0.00 2.29
130 131 6.592870 GGAGGGAGTAGTTGCTAATTATGTT 58.407 40.000 0.00 0.00 0.00 2.71
131 132 6.483640 GGAGGGAGTAGTTGCTAATTATGTTG 59.516 42.308 0.00 0.00 0.00 3.33
132 133 7.195374 AGGGAGTAGTTGCTAATTATGTTGA 57.805 36.000 0.00 0.00 0.00 3.18
133 134 7.806180 AGGGAGTAGTTGCTAATTATGTTGAT 58.194 34.615 0.00 0.00 0.00 2.57
134 135 8.275040 AGGGAGTAGTTGCTAATTATGTTGATT 58.725 33.333 0.00 0.00 0.00 2.57
135 136 8.345565 GGGAGTAGTTGCTAATTATGTTGATTG 58.654 37.037 0.00 0.00 0.00 2.67
136 137 8.893727 GGAGTAGTTGCTAATTATGTTGATTGT 58.106 33.333 0.00 0.00 0.00 2.71
159 160 7.751732 TGTTATTGATTGTGACTATGAACTGC 58.248 34.615 0.00 0.00 0.00 4.40
160 161 7.607607 TGTTATTGATTGTGACTATGAACTGCT 59.392 33.333 0.00 0.00 0.00 4.24
161 162 5.868043 TTGATTGTGACTATGAACTGCTG 57.132 39.130 0.00 0.00 0.00 4.41
162 163 4.256110 TGATTGTGACTATGAACTGCTGG 58.744 43.478 0.00 0.00 0.00 4.85
163 164 4.020307 TGATTGTGACTATGAACTGCTGGA 60.020 41.667 0.00 0.00 0.00 3.86
164 165 4.558226 TTGTGACTATGAACTGCTGGAT 57.442 40.909 0.00 0.00 0.00 3.41
165 166 4.128925 TGTGACTATGAACTGCTGGATC 57.871 45.455 0.00 0.00 0.00 3.36
166 167 3.515104 TGTGACTATGAACTGCTGGATCA 59.485 43.478 0.00 4.31 0.00 2.92
167 168 4.020307 TGTGACTATGAACTGCTGGATCAA 60.020 41.667 0.00 0.00 0.00 2.57
168 169 4.937620 GTGACTATGAACTGCTGGATCAAA 59.062 41.667 0.00 0.00 0.00 2.69
169 170 5.587844 GTGACTATGAACTGCTGGATCAAAT 59.412 40.000 0.00 0.00 0.00 2.32
170 171 6.763135 GTGACTATGAACTGCTGGATCAAATA 59.237 38.462 0.00 0.00 0.00 1.40
171 172 7.443575 GTGACTATGAACTGCTGGATCAAATAT 59.556 37.037 0.00 0.00 0.00 1.28
172 173 7.658982 TGACTATGAACTGCTGGATCAAATATC 59.341 37.037 0.00 3.54 0.00 1.63
173 174 5.936686 ATGAACTGCTGGATCAAATATCG 57.063 39.130 0.00 0.00 0.00 2.92
174 175 3.561310 TGAACTGCTGGATCAAATATCGC 59.439 43.478 0.00 0.00 0.00 4.58
175 176 3.482156 ACTGCTGGATCAAATATCGCT 57.518 42.857 0.00 0.00 0.00 4.93
176 177 3.813443 ACTGCTGGATCAAATATCGCTT 58.187 40.909 0.00 0.00 0.00 4.68
177 178 4.960938 ACTGCTGGATCAAATATCGCTTA 58.039 39.130 0.00 0.00 0.00 3.09
178 179 5.368145 ACTGCTGGATCAAATATCGCTTAA 58.632 37.500 0.00 0.00 0.00 1.85
179 180 5.822519 ACTGCTGGATCAAATATCGCTTAAA 59.177 36.000 0.00 0.00 0.00 1.52
180 181 6.488006 ACTGCTGGATCAAATATCGCTTAAAT 59.512 34.615 0.00 0.00 0.00 1.40
181 182 7.013655 ACTGCTGGATCAAATATCGCTTAAATT 59.986 33.333 0.00 0.00 0.00 1.82
182 183 8.389779 TGCTGGATCAAATATCGCTTAAATTA 57.610 30.769 0.00 0.00 0.00 1.40
183 184 8.845227 TGCTGGATCAAATATCGCTTAAATTAA 58.155 29.630 0.00 0.00 0.00 1.40
184 185 9.677567 GCTGGATCAAATATCGCTTAAATTAAA 57.322 29.630 0.00 0.00 0.00 1.52
213 214 8.735692 AAAAATTTGAAGCAAATGAGAGGAAA 57.264 26.923 6.19 0.00 42.32 3.13
214 215 8.735692 AAAATTTGAAGCAAATGAGAGGAAAA 57.264 26.923 6.19 0.00 42.32 2.29
215 216 7.719778 AATTTGAAGCAAATGAGAGGAAAAC 57.280 32.000 6.19 0.00 42.32 2.43
216 217 5.850557 TTGAAGCAAATGAGAGGAAAACA 57.149 34.783 0.00 0.00 0.00 2.83
217 218 5.850557 TGAAGCAAATGAGAGGAAAACAA 57.149 34.783 0.00 0.00 0.00 2.83
218 219 6.219417 TGAAGCAAATGAGAGGAAAACAAA 57.781 33.333 0.00 0.00 0.00 2.83
219 220 6.819284 TGAAGCAAATGAGAGGAAAACAAAT 58.181 32.000 0.00 0.00 0.00 2.32
220 221 6.702723 TGAAGCAAATGAGAGGAAAACAAATG 59.297 34.615 0.00 0.00 0.00 2.32
221 222 6.409524 AGCAAATGAGAGGAAAACAAATGA 57.590 33.333 0.00 0.00 0.00 2.57
222 223 6.218746 AGCAAATGAGAGGAAAACAAATGAC 58.781 36.000 0.00 0.00 0.00 3.06
223 224 5.117592 GCAAATGAGAGGAAAACAAATGACG 59.882 40.000 0.00 0.00 0.00 4.35
224 225 6.437928 CAAATGAGAGGAAAACAAATGACGA 58.562 36.000 0.00 0.00 0.00 4.20
225 226 6.824305 AATGAGAGGAAAACAAATGACGAT 57.176 33.333 0.00 0.00 0.00 3.73
226 227 5.862924 TGAGAGGAAAACAAATGACGATC 57.137 39.130 0.00 0.00 0.00 3.69
227 228 4.695455 TGAGAGGAAAACAAATGACGATCC 59.305 41.667 0.00 0.00 0.00 3.36
228 229 4.651778 AGAGGAAAACAAATGACGATCCA 58.348 39.130 0.00 0.00 0.00 3.41
229 230 5.256474 AGAGGAAAACAAATGACGATCCAT 58.744 37.500 0.00 0.00 0.00 3.41
230 231 6.414732 AGAGGAAAACAAATGACGATCCATA 58.585 36.000 0.00 0.00 0.00 2.74
231 232 7.056635 AGAGGAAAACAAATGACGATCCATAT 58.943 34.615 0.00 0.00 0.00 1.78
232 233 7.557719 AGAGGAAAACAAATGACGATCCATATT 59.442 33.333 0.00 0.00 0.00 1.28
233 234 8.746052 AGGAAAACAAATGACGATCCATATTA 57.254 30.769 0.00 0.00 0.00 0.98
234 235 8.621286 AGGAAAACAAATGACGATCCATATTAC 58.379 33.333 0.00 0.00 0.00 1.89
235 236 8.621286 GGAAAACAAATGACGATCCATATTACT 58.379 33.333 0.00 0.00 0.00 2.24
239 240 8.964476 ACAAATGACGATCCATATTACTTTCT 57.036 30.769 0.00 0.00 0.00 2.52
240 241 9.396022 ACAAATGACGATCCATATTACTTTCTT 57.604 29.630 0.00 0.00 0.00 2.52
241 242 9.869844 CAAATGACGATCCATATTACTTTCTTC 57.130 33.333 0.00 0.00 0.00 2.87
242 243 9.613428 AAATGACGATCCATATTACTTTCTTCA 57.387 29.630 0.00 0.00 0.00 3.02
243 244 9.784531 AATGACGATCCATATTACTTTCTTCAT 57.215 29.630 0.00 0.00 0.00 2.57
244 245 9.784531 ATGACGATCCATATTACTTTCTTCATT 57.215 29.630 0.00 0.00 0.00 2.57
259 260 9.838339 ACTTTCTTCATTAAGTCTTTTGAGAGA 57.162 29.630 0.00 0.00 34.13 3.10
402 403 8.668353 TGCGGATGAATAGATATATTTCAAAGC 58.332 33.333 3.13 8.44 0.00 3.51
403 404 8.668353 GCGGATGAATAGATATATTTCAAAGCA 58.332 33.333 3.13 0.00 0.00 3.91
434 435 9.982291 TTCATTTATTTTGCTTCATACGTAGTC 57.018 29.630 0.08 0.00 43.93 2.59
435 436 9.378551 TCATTTATTTTGCTTCATACGTAGTCT 57.621 29.630 0.08 0.00 43.93 3.24
441 442 8.723777 TTTTGCTTCATACGTAGTCTATATCG 57.276 34.615 0.08 0.00 43.93 2.92
442 443 6.418585 TGCTTCATACGTAGTCTATATCGG 57.581 41.667 0.08 0.00 43.93 4.18
443 444 6.168389 TGCTTCATACGTAGTCTATATCGGA 58.832 40.000 0.08 0.00 43.93 4.55
444 445 6.652062 TGCTTCATACGTAGTCTATATCGGAA 59.348 38.462 0.08 0.00 43.93 4.30
445 446 7.336176 TGCTTCATACGTAGTCTATATCGGAAT 59.664 37.037 0.08 0.00 43.93 3.01
446 447 7.851963 GCTTCATACGTAGTCTATATCGGAATC 59.148 40.741 0.08 0.00 43.93 2.52
447 448 9.100554 CTTCATACGTAGTCTATATCGGAATCT 57.899 37.037 0.08 0.00 43.93 2.40
448 449 9.445878 TTCATACGTAGTCTATATCGGAATCTT 57.554 33.333 0.08 0.00 43.93 2.40
449 450 8.880750 TCATACGTAGTCTATATCGGAATCTTG 58.119 37.037 0.08 0.00 43.93 3.02
450 451 8.666573 CATACGTAGTCTATATCGGAATCTTGT 58.333 37.037 0.08 0.00 43.93 3.16
451 452 9.881649 ATACGTAGTCTATATCGGAATCTTGTA 57.118 33.333 0.08 0.00 43.93 2.41
452 453 8.254178 ACGTAGTCTATATCGGAATCTTGTAG 57.746 38.462 0.00 0.00 29.74 2.74
453 454 7.333921 ACGTAGTCTATATCGGAATCTTGTAGG 59.666 40.741 0.00 0.00 29.74 3.18
454 455 7.548427 CGTAGTCTATATCGGAATCTTGTAGGA 59.452 40.741 0.00 0.00 0.00 2.94
455 456 7.931578 AGTCTATATCGGAATCTTGTAGGAG 57.068 40.000 0.00 0.00 0.00 3.69
456 457 7.463431 AGTCTATATCGGAATCTTGTAGGAGT 58.537 38.462 0.00 0.00 0.00 3.85
457 458 8.604184 AGTCTATATCGGAATCTTGTAGGAGTA 58.396 37.037 0.00 0.00 0.00 2.59
458 459 9.398538 GTCTATATCGGAATCTTGTAGGAGTAT 57.601 37.037 0.00 0.00 0.00 2.12
459 460 9.976776 TCTATATCGGAATCTTGTAGGAGTATT 57.023 33.333 0.00 0.00 0.00 1.89
522 523 3.328382 AGCTACTGTTTGGCGATTACA 57.672 42.857 0.00 0.00 0.00 2.41
1260 1316 4.873817 TGCTGTGAACAATCAATTTCCAG 58.126 39.130 0.00 0.00 37.30 3.86
1317 1380 5.048782 TCAGACAATGCTCCAACAAATGTAC 60.049 40.000 0.00 0.00 0.00 2.90
1318 1381 5.048504 CAGACAATGCTCCAACAAATGTACT 60.049 40.000 0.00 0.00 0.00 2.73
1319 1382 5.182001 AGACAATGCTCCAACAAATGTACTC 59.818 40.000 0.00 0.00 0.00 2.59
1320 1383 4.218417 ACAATGCTCCAACAAATGTACTCC 59.782 41.667 0.00 0.00 0.00 3.85
1321 1384 2.790433 TGCTCCAACAAATGTACTCCC 58.210 47.619 0.00 0.00 0.00 4.30
1322 1385 2.375174 TGCTCCAACAAATGTACTCCCT 59.625 45.455 0.00 0.00 0.00 4.20
1323 1386 3.010420 GCTCCAACAAATGTACTCCCTC 58.990 50.000 0.00 0.00 0.00 4.30
1324 1387 3.610911 CTCCAACAAATGTACTCCCTCC 58.389 50.000 0.00 0.00 0.00 4.30
1325 1388 2.027561 TCCAACAAATGTACTCCCTCCG 60.028 50.000 0.00 0.00 0.00 4.63
1326 1389 2.290071 CCAACAAATGTACTCCCTCCGT 60.290 50.000 0.00 0.00 0.00 4.69
1327 1390 3.408634 CAACAAATGTACTCCCTCCGTT 58.591 45.455 0.00 0.00 0.00 4.44
1328 1391 3.329929 ACAAATGTACTCCCTCCGTTC 57.670 47.619 0.00 0.00 0.00 3.95
1329 1392 2.268298 CAAATGTACTCCCTCCGTTCG 58.732 52.381 0.00 0.00 0.00 3.95
1330 1393 0.822164 AATGTACTCCCTCCGTTCGG 59.178 55.000 4.74 4.74 0.00 4.30
1331 1394 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
1332 1395 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
1333 1396 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1334 1397 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1335 1398 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1336 1399 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1337 1400 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1338 1401 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1339 1402 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1340 1403 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1341 1404 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1342 1405 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1343 1406 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
1344 1407 5.389859 TCCGTTCGGAATTACTTGTCTTA 57.610 39.130 11.66 0.00 0.00 2.10
1345 1408 5.404946 TCCGTTCGGAATTACTTGTCTTAG 58.595 41.667 11.66 0.00 0.00 2.18
1346 1409 5.183713 TCCGTTCGGAATTACTTGTCTTAGA 59.816 40.000 11.66 0.00 0.00 2.10
1347 1410 6.040878 CCGTTCGGAATTACTTGTCTTAGAT 58.959 40.000 5.19 0.00 0.00 1.98
1348 1411 6.534079 CCGTTCGGAATTACTTGTCTTAGATT 59.466 38.462 5.19 0.00 0.00 2.40
1349 1412 7.064253 CCGTTCGGAATTACTTGTCTTAGATTT 59.936 37.037 5.19 0.00 0.00 2.17
1350 1413 7.898309 CGTTCGGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
1351 1414 8.718734 GTTCGGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
1352 1415 8.475331 TCGGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
1353 1416 8.311836 TCGGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
1354 1417 9.582431 CGGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
1361 1424 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
1362 1425 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
1363 1426 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
1364 1427 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
1365 1428 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
1366 1429 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
1383 1446 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
1384 1447 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
1385 1448 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
1386 1449 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
1389 1452 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
1393 1456 9.628500 TCTAGACTCATTTTAGTGCTAGATACA 57.372 33.333 0.00 0.00 34.69 2.29
1394 1457 9.672086 CTAGACTCATTTTAGTGCTAGATACAC 57.328 37.037 0.00 0.00 38.35 2.90
1395 1458 7.493367 AGACTCATTTTAGTGCTAGATACACC 58.507 38.462 0.00 0.00 38.87 4.16
1396 1459 6.583562 ACTCATTTTAGTGCTAGATACACCC 58.416 40.000 0.00 0.00 38.87 4.61
1397 1460 5.597806 TCATTTTAGTGCTAGATACACCCG 58.402 41.667 0.00 0.00 38.87 5.28
1398 1461 5.128171 TCATTTTAGTGCTAGATACACCCGT 59.872 40.000 0.00 0.00 38.87 5.28
1399 1462 6.321945 TCATTTTAGTGCTAGATACACCCGTA 59.678 38.462 0.00 0.00 38.87 4.02
1400 1463 6.720112 TTTTAGTGCTAGATACACCCGTAT 57.280 37.500 0.00 0.00 41.16 3.06
1412 1475 4.303086 ACACCCGTATCTAGACAAATCG 57.697 45.455 0.00 0.00 0.00 3.34
1413 1476 3.949754 ACACCCGTATCTAGACAAATCGA 59.050 43.478 0.00 0.00 0.00 3.59
1414 1477 4.400251 ACACCCGTATCTAGACAAATCGAA 59.600 41.667 0.00 0.00 0.00 3.71
1415 1478 4.976731 CACCCGTATCTAGACAAATCGAAG 59.023 45.833 0.00 0.00 0.00 3.79
1416 1479 4.885907 ACCCGTATCTAGACAAATCGAAGA 59.114 41.667 0.00 0.00 45.75 2.87
1417 1480 5.213675 CCCGTATCTAGACAAATCGAAGAC 58.786 45.833 0.00 0.00 42.51 3.01
1418 1481 5.220989 CCCGTATCTAGACAAATCGAAGACA 60.221 44.000 0.00 0.00 42.51 3.41
1419 1482 6.263344 CCGTATCTAGACAAATCGAAGACAA 58.737 40.000 0.00 0.00 42.51 3.18
1420 1483 6.415280 CCGTATCTAGACAAATCGAAGACAAG 59.585 42.308 0.00 0.00 42.51 3.16
1421 1484 6.967767 CGTATCTAGACAAATCGAAGACAAGT 59.032 38.462 0.00 0.00 42.51 3.16
1422 1485 8.121086 CGTATCTAGACAAATCGAAGACAAGTA 58.879 37.037 0.00 0.00 42.51 2.24
1423 1486 9.784680 GTATCTAGACAAATCGAAGACAAGTAA 57.215 33.333 0.00 0.00 42.51 2.24
1425 1488 9.877178 ATCTAGACAAATCGAAGACAAGTAATT 57.123 29.630 0.00 0.00 42.51 1.40
1426 1489 9.355215 TCTAGACAAATCGAAGACAAGTAATTC 57.645 33.333 0.00 0.00 42.51 2.17
1427 1490 7.050281 AGACAAATCGAAGACAAGTAATTCG 57.950 36.000 11.60 11.60 45.37 3.34
1428 1491 6.090898 AGACAAATCGAAGACAAGTAATTCGG 59.909 38.462 15.56 6.43 44.42 4.30
1429 1492 5.929992 ACAAATCGAAGACAAGTAATTCGGA 59.070 36.000 15.56 7.12 44.42 4.55
1430 1493 6.425721 ACAAATCGAAGACAAGTAATTCGGAA 59.574 34.615 15.56 0.00 44.42 4.30
1431 1494 6.404712 AATCGAAGACAAGTAATTCGGAAC 57.595 37.500 15.56 0.00 44.42 3.62
1733 1799 6.128580 CCGGAAACAAAGCTGGAAAATTTATG 60.129 38.462 0.00 0.00 32.05 1.90
1915 1990 2.710377 TGGAGGCATAACACACATGTC 58.290 47.619 0.00 0.00 38.45 3.06
1981 2058 4.607293 AAGACAAATCTGGGGCTTTTTC 57.393 40.909 0.00 0.00 34.48 2.29
1985 2062 3.181466 ACAAATCTGGGGCTTTTTCACAC 60.181 43.478 0.00 0.00 0.00 3.82
1995 2072 5.417580 GGGGCTTTTTCACACATGATACTAA 59.582 40.000 0.00 0.00 33.85 2.24
1996 2073 6.096846 GGGGCTTTTTCACACATGATACTAAT 59.903 38.462 0.00 0.00 33.85 1.73
2011 2088 1.061033 ACTAATCATCCTCCCAGGCCT 60.061 52.381 0.00 0.00 34.61 5.19
2019 2096 1.188863 CCTCCCAGGCCTTGAATTTG 58.811 55.000 0.00 0.00 0.00 2.32
2104 2182 4.836125 ACATCCTTGTTTACTTGCACAG 57.164 40.909 0.00 0.00 29.55 3.66
2194 2272 2.342279 CCGAGAGCCAAACGTCCA 59.658 61.111 0.00 0.00 0.00 4.02
3050 3224 6.980978 TGCTACATCTACTTGATAAGCTTGTC 59.019 38.462 15.70 15.70 40.83 3.18
3316 3490 2.685897 GTGAGGCTACTACCAGTGAGAG 59.314 54.545 0.00 0.00 0.00 3.20
3443 3617 3.139397 TGGATTACAGTCTTTTGGTGGGT 59.861 43.478 0.00 0.00 0.00 4.51
3489 3663 8.110860 AGTTATAATGACTGAAGGTTGGTTTG 57.889 34.615 0.00 0.00 0.00 2.93
3492 3666 5.520376 AATGACTGAAGGTTGGTTTGAAG 57.480 39.130 0.00 0.00 0.00 3.02
3641 3816 4.407296 AGGAGATACTGATCCAAACAGGTC 59.593 45.833 0.00 0.00 39.38 3.85
3997 4175 3.325870 CATGAGGTTTAGAAGTCGCACA 58.674 45.455 0.00 0.00 0.00 4.57
4601 4779 6.143061 TCGAAAGAGTGATTGTGAACCACAA 61.143 40.000 13.90 13.90 45.88 3.33
4855 5033 0.463620 CAGCAGCTCCTAGGACTTCC 59.536 60.000 7.62 4.42 0.00 3.46
4888 5066 0.928229 GCGTTGACTGTCGAAACACT 59.072 50.000 0.00 0.00 0.00 3.55
4940 5118 3.579709 CCTCTACATGTACATCATCGGC 58.420 50.000 5.07 0.00 34.09 5.54
5004 5182 1.305465 TCGTACTGCCCCCTGCTTA 60.305 57.895 0.00 0.00 42.00 3.09
5070 5248 5.124457 AGACTGCGTTGCATTTGAATAATCT 59.876 36.000 0.00 0.00 38.13 2.40
5329 5508 3.719268 TTACCTGAGTTGACATGCCAT 57.281 42.857 0.00 0.00 0.00 4.40
5349 5528 1.445716 GCTTCTATGCTGCTGCCTGG 61.446 60.000 13.47 5.50 38.71 4.45
5388 5567 6.748333 TTCTTTGTATCTGAATTGCTGAGG 57.252 37.500 0.00 0.00 0.00 3.86
5445 5627 4.687483 CCAATTTGAATTGCTGGACTCAAC 59.313 41.667 10.26 0.00 43.38 3.18
5476 5658 8.737168 AATGCTACTGCTATGTCTGAATTAAA 57.263 30.769 0.00 0.00 40.48 1.52
5484 5666 8.165239 TGCTATGTCTGAATTAAACACAAACT 57.835 30.769 0.00 0.00 0.00 2.66
5516 5698 4.660938 AGGTTGGGCAACTCGGGC 62.661 66.667 0.00 0.00 40.94 6.13
5532 5715 2.044758 CGGGCCTACTGTTAATACCCT 58.955 52.381 0.84 0.00 33.50 4.34
5562 5745 4.944619 TGTATGAGCCAAGTCCTGATAG 57.055 45.455 0.00 0.00 0.00 2.08
5618 5813 0.837272 TTGAGGCACCCCTGTATAGC 59.163 55.000 0.00 0.00 43.12 2.97
5627 5822 3.134804 CACCCCTGTATAGCTAACTTGCT 59.865 47.826 0.00 0.00 46.11 3.91
5628 5823 3.134804 ACCCCTGTATAGCTAACTTGCTG 59.865 47.826 0.00 0.00 43.87 4.41
5641 5836 3.788227 ACTTGCTGTTACCTCCATTCA 57.212 42.857 0.00 0.00 0.00 2.57
5650 5845 6.183360 GCTGTTACCTCCATTCAGAAATAACC 60.183 42.308 0.00 0.00 0.00 2.85
5651 5846 6.785076 TGTTACCTCCATTCAGAAATAACCA 58.215 36.000 0.00 0.00 0.00 3.67
5814 6016 9.832445 GATCATAGAACAAAGTTGGGTAGATTA 57.168 33.333 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.752661 TTAGTGGCAAAAATACGTCACC 57.247 40.909 0.00 0.00 38.53 4.02
1 2 8.823818 AGTATATTAGTGGCAAAAATACGTCAC 58.176 33.333 0.00 0.00 38.02 3.67
2 3 8.951787 AGTATATTAGTGGCAAAAATACGTCA 57.048 30.769 0.00 0.00 0.00 4.35
3 4 8.493547 GGAGTATATTAGTGGCAAAAATACGTC 58.506 37.037 0.00 3.68 0.00 4.34
4 5 7.443272 GGGAGTATATTAGTGGCAAAAATACGT 59.557 37.037 0.00 0.00 0.00 3.57
5 6 7.660208 AGGGAGTATATTAGTGGCAAAAATACG 59.340 37.037 5.25 0.00 0.00 3.06
6 7 8.919777 AGGGAGTATATTAGTGGCAAAAATAC 57.080 34.615 5.25 2.94 0.00 1.89
7 8 7.876068 CGAGGGAGTATATTAGTGGCAAAAATA 59.124 37.037 0.00 0.00 0.00 1.40
8 9 6.710744 CGAGGGAGTATATTAGTGGCAAAAAT 59.289 38.462 0.00 0.00 0.00 1.82
9 10 6.053005 CGAGGGAGTATATTAGTGGCAAAAA 58.947 40.000 0.00 0.00 0.00 1.94
10 11 5.129815 ACGAGGGAGTATATTAGTGGCAAAA 59.870 40.000 0.00 0.00 0.00 2.44
11 12 4.652421 ACGAGGGAGTATATTAGTGGCAAA 59.348 41.667 0.00 0.00 0.00 3.68
12 13 4.220724 ACGAGGGAGTATATTAGTGGCAA 58.779 43.478 0.00 0.00 0.00 4.52
13 14 3.840991 ACGAGGGAGTATATTAGTGGCA 58.159 45.455 0.00 0.00 0.00 4.92
14 15 4.868314 AACGAGGGAGTATATTAGTGGC 57.132 45.455 0.00 0.00 0.00 5.01
15 16 6.401047 TGAAACGAGGGAGTATATTAGTGG 57.599 41.667 0.00 0.00 0.00 4.00
16 17 8.712285 TTTTGAAACGAGGGAGTATATTAGTG 57.288 34.615 0.00 0.00 0.00 2.74
17 18 9.543783 GATTTTGAAACGAGGGAGTATATTAGT 57.456 33.333 0.00 0.00 0.00 2.24
18 19 9.542462 TGATTTTGAAACGAGGGAGTATATTAG 57.458 33.333 0.00 0.00 0.00 1.73
19 20 9.542462 CTGATTTTGAAACGAGGGAGTATATTA 57.458 33.333 0.00 0.00 0.00 0.98
20 21 8.047310 ACTGATTTTGAAACGAGGGAGTATATT 58.953 33.333 0.00 0.00 0.00 1.28
21 22 7.495934 CACTGATTTTGAAACGAGGGAGTATAT 59.504 37.037 0.00 0.00 0.00 0.86
22 23 6.816640 CACTGATTTTGAAACGAGGGAGTATA 59.183 38.462 0.00 0.00 0.00 1.47
23 24 5.643777 CACTGATTTTGAAACGAGGGAGTAT 59.356 40.000 0.00 0.00 0.00 2.12
24 25 4.994852 CACTGATTTTGAAACGAGGGAGTA 59.005 41.667 0.00 0.00 0.00 2.59
25 26 3.815401 CACTGATTTTGAAACGAGGGAGT 59.185 43.478 0.00 0.00 0.00 3.85
26 27 3.815401 ACACTGATTTTGAAACGAGGGAG 59.185 43.478 0.00 0.00 0.00 4.30
27 28 3.813166 GACACTGATTTTGAAACGAGGGA 59.187 43.478 0.00 0.00 0.00 4.20
28 29 3.815401 AGACACTGATTTTGAAACGAGGG 59.185 43.478 0.00 0.00 0.00 4.30
29 30 4.511454 TGAGACACTGATTTTGAAACGAGG 59.489 41.667 0.00 0.00 0.00 4.63
30 31 5.657470 TGAGACACTGATTTTGAAACGAG 57.343 39.130 0.00 0.00 0.00 4.18
31 32 5.584649 AGTTGAGACACTGATTTTGAAACGA 59.415 36.000 0.00 0.00 0.00 3.85
32 33 5.810525 AGTTGAGACACTGATTTTGAAACG 58.189 37.500 0.00 0.00 0.00 3.60
33 34 8.466086 AAAAGTTGAGACACTGATTTTGAAAC 57.534 30.769 0.00 0.00 0.00 2.78
35 36 9.567848 GTAAAAAGTTGAGACACTGATTTTGAA 57.432 29.630 0.00 0.00 0.00 2.69
36 37 8.956426 AGTAAAAAGTTGAGACACTGATTTTGA 58.044 29.630 0.00 0.00 0.00 2.69
40 41 9.614792 AGTTAGTAAAAAGTTGAGACACTGATT 57.385 29.630 0.00 0.00 0.00 2.57
41 42 9.614792 AAGTTAGTAAAAAGTTGAGACACTGAT 57.385 29.630 0.00 0.00 0.00 2.90
42 43 9.444600 AAAGTTAGTAAAAAGTTGAGACACTGA 57.555 29.630 0.00 0.00 0.00 3.41
59 60 9.471702 ACCTTATGCTCTGTACTAAAGTTAGTA 57.528 33.333 6.81 6.81 43.36 1.82
60 61 8.363761 ACCTTATGCTCTGTACTAAAGTTAGT 57.636 34.615 8.67 8.67 45.39 2.24
63 64 9.654663 CTTAACCTTATGCTCTGTACTAAAGTT 57.345 33.333 0.00 0.00 0.00 2.66
64 65 9.032624 TCTTAACCTTATGCTCTGTACTAAAGT 57.967 33.333 0.00 0.00 0.00 2.66
65 66 9.303537 GTCTTAACCTTATGCTCTGTACTAAAG 57.696 37.037 0.00 0.00 0.00 1.85
66 67 8.809066 TGTCTTAACCTTATGCTCTGTACTAAA 58.191 33.333 0.00 0.00 0.00 1.85
67 68 8.357290 TGTCTTAACCTTATGCTCTGTACTAA 57.643 34.615 0.00 0.00 0.00 2.24
68 69 7.949690 TGTCTTAACCTTATGCTCTGTACTA 57.050 36.000 0.00 0.00 0.00 1.82
69 70 6.852420 TGTCTTAACCTTATGCTCTGTACT 57.148 37.500 0.00 0.00 0.00 2.73
70 71 8.494016 AAATGTCTTAACCTTATGCTCTGTAC 57.506 34.615 0.00 0.00 0.00 2.90
72 73 9.686683 AATAAATGTCTTAACCTTATGCTCTGT 57.313 29.630 0.00 0.00 0.00 3.41
81 82 8.085909 CCGTTCCAAAATAAATGTCTTAACCTT 58.914 33.333 0.00 0.00 0.00 3.50
82 83 7.449086 TCCGTTCCAAAATAAATGTCTTAACCT 59.551 33.333 0.00 0.00 0.00 3.50
83 84 7.595604 TCCGTTCCAAAATAAATGTCTTAACC 58.404 34.615 0.00 0.00 0.00 2.85
84 85 7.753580 CCTCCGTTCCAAAATAAATGTCTTAAC 59.246 37.037 0.00 0.00 0.00 2.01
85 86 7.094118 CCCTCCGTTCCAAAATAAATGTCTTAA 60.094 37.037 0.00 0.00 0.00 1.85
86 87 6.376018 CCCTCCGTTCCAAAATAAATGTCTTA 59.624 38.462 0.00 0.00 0.00 2.10
87 88 5.185056 CCCTCCGTTCCAAAATAAATGTCTT 59.815 40.000 0.00 0.00 0.00 3.01
88 89 4.705023 CCCTCCGTTCCAAAATAAATGTCT 59.295 41.667 0.00 0.00 0.00 3.41
89 90 4.703093 TCCCTCCGTTCCAAAATAAATGTC 59.297 41.667 0.00 0.00 0.00 3.06
90 91 4.668636 TCCCTCCGTTCCAAAATAAATGT 58.331 39.130 0.00 0.00 0.00 2.71
91 92 4.705023 ACTCCCTCCGTTCCAAAATAAATG 59.295 41.667 0.00 0.00 0.00 2.32
92 93 4.930696 ACTCCCTCCGTTCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
93 94 4.376225 ACTCCCTCCGTTCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
94 95 4.533311 ACTACTCCCTCCGTTCCAAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
95 96 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
96 97 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
97 98 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
98 99 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
99 100 1.621814 CAACTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
100 101 1.263356 CAACTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
101 102 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
102 103 0.896226 AGCAACTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
103 104 2.226962 TAGCAACTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
104 105 2.226962 TTAGCAACTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
105 106 3.821421 AATTAGCAACTACTCCCTCCG 57.179 47.619 0.00 0.00 0.00 4.63
106 107 6.176014 ACATAATTAGCAACTACTCCCTCC 57.824 41.667 0.00 0.00 0.00 4.30
107 108 7.272978 TCAACATAATTAGCAACTACTCCCTC 58.727 38.462 0.00 0.00 0.00 4.30
108 109 7.195374 TCAACATAATTAGCAACTACTCCCT 57.805 36.000 0.00 0.00 0.00 4.20
109 110 8.345565 CAATCAACATAATTAGCAACTACTCCC 58.654 37.037 0.00 0.00 0.00 4.30
110 111 8.893727 ACAATCAACATAATTAGCAACTACTCC 58.106 33.333 0.00 0.00 0.00 3.85
133 134 8.236586 GCAGTTCATAGTCACAATCAATAACAA 58.763 33.333 0.00 0.00 0.00 2.83
134 135 7.607607 AGCAGTTCATAGTCACAATCAATAACA 59.392 33.333 0.00 0.00 0.00 2.41
135 136 7.907045 CAGCAGTTCATAGTCACAATCAATAAC 59.093 37.037 0.00 0.00 0.00 1.89
136 137 7.066163 CCAGCAGTTCATAGTCACAATCAATAA 59.934 37.037 0.00 0.00 0.00 1.40
137 138 6.539826 CCAGCAGTTCATAGTCACAATCAATA 59.460 38.462 0.00 0.00 0.00 1.90
138 139 5.356190 CCAGCAGTTCATAGTCACAATCAAT 59.644 40.000 0.00 0.00 0.00 2.57
139 140 4.696877 CCAGCAGTTCATAGTCACAATCAA 59.303 41.667 0.00 0.00 0.00 2.57
140 141 4.020307 TCCAGCAGTTCATAGTCACAATCA 60.020 41.667 0.00 0.00 0.00 2.57
141 142 4.507710 TCCAGCAGTTCATAGTCACAATC 58.492 43.478 0.00 0.00 0.00 2.67
142 143 4.558226 TCCAGCAGTTCATAGTCACAAT 57.442 40.909 0.00 0.00 0.00 2.71
143 144 4.020307 TGATCCAGCAGTTCATAGTCACAA 60.020 41.667 0.00 0.00 0.00 3.33
144 145 3.515104 TGATCCAGCAGTTCATAGTCACA 59.485 43.478 0.00 0.00 0.00 3.58
145 146 4.128925 TGATCCAGCAGTTCATAGTCAC 57.871 45.455 0.00 0.00 0.00 3.67
146 147 4.824479 TTGATCCAGCAGTTCATAGTCA 57.176 40.909 0.00 0.00 0.00 3.41
147 148 7.148672 CGATATTTGATCCAGCAGTTCATAGTC 60.149 40.741 0.00 0.00 0.00 2.59
148 149 6.648310 CGATATTTGATCCAGCAGTTCATAGT 59.352 38.462 0.00 0.00 0.00 2.12
149 150 6.401903 GCGATATTTGATCCAGCAGTTCATAG 60.402 42.308 0.00 0.00 0.00 2.23
150 151 5.409520 GCGATATTTGATCCAGCAGTTCATA 59.590 40.000 0.00 0.00 0.00 2.15
151 152 4.214971 GCGATATTTGATCCAGCAGTTCAT 59.785 41.667 0.00 0.00 0.00 2.57
152 153 3.561310 GCGATATTTGATCCAGCAGTTCA 59.439 43.478 0.00 0.00 0.00 3.18
153 154 3.812053 AGCGATATTTGATCCAGCAGTTC 59.188 43.478 0.00 0.00 0.00 3.01
154 155 3.813443 AGCGATATTTGATCCAGCAGTT 58.187 40.909 0.00 0.00 0.00 3.16
155 156 3.482156 AGCGATATTTGATCCAGCAGT 57.518 42.857 0.00 0.00 0.00 4.40
156 157 5.929697 TTAAGCGATATTTGATCCAGCAG 57.070 39.130 0.00 0.00 0.00 4.24
157 158 6.882610 ATTTAAGCGATATTTGATCCAGCA 57.117 33.333 0.00 0.00 0.00 4.41
158 159 9.677567 TTTAATTTAAGCGATATTTGATCCAGC 57.322 29.630 0.00 0.00 0.00 4.85
187 188 9.829507 TTTCCTCTCATTTGCTTCAAATTTTTA 57.170 25.926 2.35 0.00 40.60 1.52
188 189 8.735692 TTTCCTCTCATTTGCTTCAAATTTTT 57.264 26.923 2.35 0.00 40.60 1.94
189 190 8.615211 GTTTTCCTCTCATTTGCTTCAAATTTT 58.385 29.630 2.35 0.00 40.60 1.82
190 191 7.769970 TGTTTTCCTCTCATTTGCTTCAAATTT 59.230 29.630 2.35 0.00 40.60 1.82
191 192 7.274447 TGTTTTCCTCTCATTTGCTTCAAATT 58.726 30.769 2.35 0.00 40.60 1.82
192 193 6.819284 TGTTTTCCTCTCATTTGCTTCAAAT 58.181 32.000 0.00 0.00 43.71 2.32
193 194 6.219417 TGTTTTCCTCTCATTTGCTTCAAA 57.781 33.333 0.00 0.00 37.75 2.69
194 195 5.850557 TGTTTTCCTCTCATTTGCTTCAA 57.149 34.783 0.00 0.00 0.00 2.69
195 196 5.850557 TTGTTTTCCTCTCATTTGCTTCA 57.149 34.783 0.00 0.00 0.00 3.02
196 197 6.925165 TCATTTGTTTTCCTCTCATTTGCTTC 59.075 34.615 0.00 0.00 0.00 3.86
197 198 6.703165 GTCATTTGTTTTCCTCTCATTTGCTT 59.297 34.615 0.00 0.00 0.00 3.91
198 199 6.218746 GTCATTTGTTTTCCTCTCATTTGCT 58.781 36.000 0.00 0.00 0.00 3.91
199 200 5.117592 CGTCATTTGTTTTCCTCTCATTTGC 59.882 40.000 0.00 0.00 0.00 3.68
200 201 6.437928 TCGTCATTTGTTTTCCTCTCATTTG 58.562 36.000 0.00 0.00 0.00 2.32
201 202 6.633500 TCGTCATTTGTTTTCCTCTCATTT 57.367 33.333 0.00 0.00 0.00 2.32
202 203 6.127897 GGATCGTCATTTGTTTTCCTCTCATT 60.128 38.462 0.00 0.00 0.00 2.57
203 204 5.355350 GGATCGTCATTTGTTTTCCTCTCAT 59.645 40.000 0.00 0.00 0.00 2.90
204 205 4.695455 GGATCGTCATTTGTTTTCCTCTCA 59.305 41.667 0.00 0.00 0.00 3.27
205 206 4.695455 TGGATCGTCATTTGTTTTCCTCTC 59.305 41.667 0.00 0.00 0.00 3.20
206 207 4.651778 TGGATCGTCATTTGTTTTCCTCT 58.348 39.130 0.00 0.00 0.00 3.69
207 208 5.567138 ATGGATCGTCATTTGTTTTCCTC 57.433 39.130 0.00 0.00 0.00 3.71
208 209 7.645058 AATATGGATCGTCATTTGTTTTCCT 57.355 32.000 0.00 0.00 0.00 3.36
209 210 8.621286 AGTAATATGGATCGTCATTTGTTTTCC 58.379 33.333 0.00 0.00 0.00 3.13
213 214 9.396022 AGAAAGTAATATGGATCGTCATTTGTT 57.604 29.630 0.00 0.00 0.00 2.83
214 215 8.964476 AGAAAGTAATATGGATCGTCATTTGT 57.036 30.769 0.00 0.00 0.00 2.83
215 216 9.869844 GAAGAAAGTAATATGGATCGTCATTTG 57.130 33.333 0.00 0.00 0.00 2.32
216 217 9.613428 TGAAGAAAGTAATATGGATCGTCATTT 57.387 29.630 0.00 0.00 0.00 2.32
217 218 9.784531 ATGAAGAAAGTAATATGGATCGTCATT 57.215 29.630 0.00 0.00 34.07 2.57
218 219 9.784531 AATGAAGAAAGTAATATGGATCGTCAT 57.215 29.630 0.00 0.00 37.53 3.06
233 234 9.838339 TCTCTCAAAAGACTTAATGAAGAAAGT 57.162 29.630 0.00 0.00 38.62 2.66
376 377 8.668353 GCTTTGAAATATATCTATTCATCCGCA 58.332 33.333 0.33 0.00 0.00 5.69
377 378 8.668353 TGCTTTGAAATATATCTATTCATCCGC 58.332 33.333 0.33 4.36 0.00 5.54
408 409 9.982291 GACTACGTATGAAGCAAAATAAATGAA 57.018 29.630 0.00 0.00 0.00 2.57
409 410 9.378551 AGACTACGTATGAAGCAAAATAAATGA 57.621 29.630 0.00 0.00 0.00 2.57
415 416 9.343103 CGATATAGACTACGTATGAAGCAAAAT 57.657 33.333 0.00 0.00 0.00 1.82
416 417 7.806487 CCGATATAGACTACGTATGAAGCAAAA 59.194 37.037 0.00 0.00 0.00 2.44
417 418 7.173735 TCCGATATAGACTACGTATGAAGCAAA 59.826 37.037 0.00 0.00 0.00 3.68
418 419 6.652062 TCCGATATAGACTACGTATGAAGCAA 59.348 38.462 0.00 0.00 0.00 3.91
419 420 6.168389 TCCGATATAGACTACGTATGAAGCA 58.832 40.000 0.00 0.00 0.00 3.91
420 421 6.659361 TCCGATATAGACTACGTATGAAGC 57.341 41.667 0.00 0.00 0.00 3.86
421 422 9.100554 AGATTCCGATATAGACTACGTATGAAG 57.899 37.037 0.00 0.00 0.00 3.02
422 423 9.445878 AAGATTCCGATATAGACTACGTATGAA 57.554 33.333 0.00 0.00 0.00 2.57
423 424 8.880750 CAAGATTCCGATATAGACTACGTATGA 58.119 37.037 0.00 0.00 0.00 2.15
424 425 8.666573 ACAAGATTCCGATATAGACTACGTATG 58.333 37.037 0.00 0.00 0.00 2.39
425 426 8.789825 ACAAGATTCCGATATAGACTACGTAT 57.210 34.615 0.00 0.00 0.00 3.06
426 427 9.363763 CTACAAGATTCCGATATAGACTACGTA 57.636 37.037 0.00 0.00 0.00 3.57
427 428 7.333921 CCTACAAGATTCCGATATAGACTACGT 59.666 40.741 0.00 0.00 0.00 3.57
428 429 7.548427 TCCTACAAGATTCCGATATAGACTACG 59.452 40.741 0.00 0.00 0.00 3.51
429 430 8.789825 TCCTACAAGATTCCGATATAGACTAC 57.210 38.462 0.00 0.00 0.00 2.73
430 431 8.604184 ACTCCTACAAGATTCCGATATAGACTA 58.396 37.037 0.00 0.00 0.00 2.59
431 432 7.463431 ACTCCTACAAGATTCCGATATAGACT 58.537 38.462 0.00 0.00 0.00 3.24
432 433 7.690952 ACTCCTACAAGATTCCGATATAGAC 57.309 40.000 0.00 0.00 0.00 2.59
433 434 9.976776 AATACTCCTACAAGATTCCGATATAGA 57.023 33.333 0.00 0.00 0.00 1.98
437 438 9.803507 TCTAAATACTCCTACAAGATTCCGATA 57.196 33.333 0.00 0.00 0.00 2.92
438 439 8.707796 TCTAAATACTCCTACAAGATTCCGAT 57.292 34.615 0.00 0.00 0.00 4.18
439 440 8.529424 TTCTAAATACTCCTACAAGATTCCGA 57.471 34.615 0.00 0.00 0.00 4.55
440 441 9.032420 GTTTCTAAATACTCCTACAAGATTCCG 57.968 37.037 0.00 0.00 0.00 4.30
441 442 9.032420 CGTTTCTAAATACTCCTACAAGATTCC 57.968 37.037 0.00 0.00 0.00 3.01
442 443 9.032420 CCGTTTCTAAATACTCCTACAAGATTC 57.968 37.037 0.00 0.00 0.00 2.52
443 444 8.755977 TCCGTTTCTAAATACTCCTACAAGATT 58.244 33.333 0.00 0.00 0.00 2.40
444 445 8.302515 TCCGTTTCTAAATACTCCTACAAGAT 57.697 34.615 0.00 0.00 0.00 2.40
445 446 7.707624 TCCGTTTCTAAATACTCCTACAAGA 57.292 36.000 0.00 0.00 0.00 3.02
446 447 8.033626 AGTTCCGTTTCTAAATACTCCTACAAG 58.966 37.037 0.00 0.00 0.00 3.16
447 448 7.899973 AGTTCCGTTTCTAAATACTCCTACAA 58.100 34.615 0.00 0.00 0.00 2.41
448 449 7.472334 AGTTCCGTTTCTAAATACTCCTACA 57.528 36.000 0.00 0.00 0.00 2.74
449 450 7.816513 ACAAGTTCCGTTTCTAAATACTCCTAC 59.183 37.037 0.00 0.00 0.00 3.18
450 451 7.899973 ACAAGTTCCGTTTCTAAATACTCCTA 58.100 34.615 0.00 0.00 0.00 2.94
451 452 6.766429 ACAAGTTCCGTTTCTAAATACTCCT 58.234 36.000 0.00 0.00 0.00 3.69
452 453 6.183360 CGACAAGTTCCGTTTCTAAATACTCC 60.183 42.308 0.00 0.00 0.00 3.85
453 454 6.669268 GCGACAAGTTCCGTTTCTAAATACTC 60.669 42.308 0.00 0.00 0.00 2.59
454 455 5.119743 GCGACAAGTTCCGTTTCTAAATACT 59.880 40.000 0.00 0.00 0.00 2.12
455 456 5.119743 AGCGACAAGTTCCGTTTCTAAATAC 59.880 40.000 0.00 0.00 0.00 1.89
456 457 5.232463 AGCGACAAGTTCCGTTTCTAAATA 58.768 37.500 0.00 0.00 0.00 1.40
457 458 4.062991 AGCGACAAGTTCCGTTTCTAAAT 58.937 39.130 0.00 0.00 0.00 1.40
458 459 3.460103 AGCGACAAGTTCCGTTTCTAAA 58.540 40.909 0.00 0.00 0.00 1.85
459 460 3.102052 AGCGACAAGTTCCGTTTCTAA 57.898 42.857 0.00 0.00 0.00 2.10
522 523 3.076621 TGTCGGAACTACGTACAGACAT 58.923 45.455 11.66 0.00 33.00 3.06
1241 1297 7.499292 ACAATTCTGGAAATTGATTGTTCACA 58.501 30.769 15.33 0.00 39.36 3.58
1260 1316 8.464770 TGCTTTCTAACATATGCAAACAATTC 57.535 30.769 1.58 0.00 0.00 2.17
1317 1380 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1318 1381 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1319 1382 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1320 1383 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1321 1384 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
1322 1385 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
1323 1386 5.404946 TCTAAGACAAGTAATTCCGAACGG 58.595 41.667 6.94 6.94 0.00 4.44
1324 1387 7.521509 AATCTAAGACAAGTAATTCCGAACG 57.478 36.000 0.00 0.00 0.00 3.95
1325 1388 8.718734 ACAAATCTAAGACAAGTAATTCCGAAC 58.281 33.333 0.00 0.00 0.00 3.95
1326 1389 8.842358 ACAAATCTAAGACAAGTAATTCCGAA 57.158 30.769 0.00 0.00 0.00 4.30
1327 1390 8.311836 AGACAAATCTAAGACAAGTAATTCCGA 58.688 33.333 0.00 0.00 31.46 4.55
1328 1391 8.480643 AGACAAATCTAAGACAAGTAATTCCG 57.519 34.615 0.00 0.00 31.46 4.30
1335 1398 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
1336 1399 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1337 1400 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1338 1401 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1339 1402 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
1340 1403 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
1357 1420 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
1358 1421 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
1359 1422 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
1360 1423 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
1363 1426 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
1367 1430 9.628500 TGTATCTAGCACTAAAATGAGTCTAGA 57.372 33.333 11.59 11.59 38.76 2.43
1368 1431 9.672086 GTGTATCTAGCACTAAAATGAGTCTAG 57.328 37.037 0.00 0.00 33.29 2.43
1369 1432 8.630917 GGTGTATCTAGCACTAAAATGAGTCTA 58.369 37.037 0.00 0.00 37.07 2.59
1370 1433 7.418025 GGGTGTATCTAGCACTAAAATGAGTCT 60.418 40.741 0.00 0.00 37.07 3.24
1371 1434 6.702282 GGGTGTATCTAGCACTAAAATGAGTC 59.298 42.308 0.00 0.00 37.07 3.36
1372 1435 6.583562 GGGTGTATCTAGCACTAAAATGAGT 58.416 40.000 0.00 0.00 37.07 3.41
1373 1436 5.692204 CGGGTGTATCTAGCACTAAAATGAG 59.308 44.000 0.00 0.00 37.07 2.90
1374 1437 5.128171 ACGGGTGTATCTAGCACTAAAATGA 59.872 40.000 0.00 0.00 37.07 2.57
1375 1438 5.357257 ACGGGTGTATCTAGCACTAAAATG 58.643 41.667 0.00 0.00 37.07 2.32
1376 1439 5.609533 ACGGGTGTATCTAGCACTAAAAT 57.390 39.130 0.00 0.00 37.07 1.82
1377 1440 6.720112 ATACGGGTGTATCTAGCACTAAAA 57.280 37.500 0.00 0.00 36.56 1.52
1389 1452 5.766670 TCGATTTGTCTAGATACGGGTGTAT 59.233 40.000 0.00 0.00 43.97 2.29
1390 1453 5.125356 TCGATTTGTCTAGATACGGGTGTA 58.875 41.667 0.00 0.00 34.45 2.90
1391 1454 3.949754 TCGATTTGTCTAGATACGGGTGT 59.050 43.478 0.00 0.00 0.00 4.16
1392 1455 4.563337 TCGATTTGTCTAGATACGGGTG 57.437 45.455 0.00 0.00 0.00 4.61
1393 1456 4.885907 TCTTCGATTTGTCTAGATACGGGT 59.114 41.667 0.00 0.00 0.00 5.28
1394 1457 5.213675 GTCTTCGATTTGTCTAGATACGGG 58.786 45.833 0.00 0.00 0.00 5.28
1395 1458 5.817988 TGTCTTCGATTTGTCTAGATACGG 58.182 41.667 0.00 0.00 0.00 4.02
1396 1459 6.967767 ACTTGTCTTCGATTTGTCTAGATACG 59.032 38.462 0.00 0.00 0.00 3.06
1397 1460 9.784680 TTACTTGTCTTCGATTTGTCTAGATAC 57.215 33.333 0.00 0.00 0.00 2.24
1399 1462 9.877178 AATTACTTGTCTTCGATTTGTCTAGAT 57.123 29.630 0.00 0.00 0.00 1.98
1400 1463 9.355215 GAATTACTTGTCTTCGATTTGTCTAGA 57.645 33.333 0.00 0.00 0.00 2.43
1401 1464 8.314635 CGAATTACTTGTCTTCGATTTGTCTAG 58.685 37.037 10.76 0.00 43.24 2.43
1402 1465 7.274904 CCGAATTACTTGTCTTCGATTTGTCTA 59.725 37.037 15.29 0.00 43.24 2.59
1403 1466 6.090898 CCGAATTACTTGTCTTCGATTTGTCT 59.909 38.462 15.29 0.00 43.24 3.41
1404 1467 6.090358 TCCGAATTACTTGTCTTCGATTTGTC 59.910 38.462 15.29 0.00 43.24 3.18
1405 1468 5.929992 TCCGAATTACTTGTCTTCGATTTGT 59.070 36.000 15.29 0.00 43.24 2.83
1406 1469 6.403333 TCCGAATTACTTGTCTTCGATTTG 57.597 37.500 15.29 4.30 43.24 2.32
1407 1470 6.400727 CGTTCCGAATTACTTGTCTTCGATTT 60.401 38.462 15.29 0.00 43.24 2.17
1408 1471 5.061808 CGTTCCGAATTACTTGTCTTCGATT 59.938 40.000 15.29 0.00 43.24 3.34
1409 1472 4.561606 CGTTCCGAATTACTTGTCTTCGAT 59.438 41.667 15.29 0.00 43.24 3.59
1410 1473 3.916172 CGTTCCGAATTACTTGTCTTCGA 59.084 43.478 15.29 0.00 43.24 3.71
1411 1474 3.060363 CCGTTCCGAATTACTTGTCTTCG 59.940 47.826 9.80 9.80 40.96 3.79
1412 1475 4.240096 TCCGTTCCGAATTACTTGTCTTC 58.760 43.478 0.00 0.00 0.00 2.87
1413 1476 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
1414 1477 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
1415 1478 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1416 1479 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1417 1480 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1418 1481 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1419 1482 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1420 1483 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1421 1484 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1422 1485 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
1423 1486 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
1424 1487 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
1425 1488 0.911769 TAGTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1426 1489 1.978454 ATAGTACTCCCTCCGTTCCG 58.022 55.000 0.00 0.00 0.00 4.30
1427 1490 4.155644 CGAATATAGTACTCCCTCCGTTCC 59.844 50.000 0.00 0.00 0.00 3.62
1428 1491 4.759183 ACGAATATAGTACTCCCTCCGTTC 59.241 45.833 0.00 0.00 0.00 3.95
1429 1492 4.518211 CACGAATATAGTACTCCCTCCGTT 59.482 45.833 0.00 0.00 0.00 4.44
1430 1493 4.070716 CACGAATATAGTACTCCCTCCGT 58.929 47.826 0.00 2.62 0.00 4.69
1431 1494 4.070716 ACACGAATATAGTACTCCCTCCG 58.929 47.826 0.00 1.94 0.00 4.63
1432 1495 6.264970 AGAAACACGAATATAGTACTCCCTCC 59.735 42.308 0.00 0.00 0.00 4.30
1433 1496 7.274603 AGAAACACGAATATAGTACTCCCTC 57.725 40.000 0.00 0.00 0.00 4.30
1434 1497 7.657023 AAGAAACACGAATATAGTACTCCCT 57.343 36.000 0.00 0.00 0.00 4.20
1435 1498 8.713737 AAAAGAAACACGAATATAGTACTCCC 57.286 34.615 0.00 0.00 0.00 4.30
1436 1499 9.583765 AGAAAAGAAACACGAATATAGTACTCC 57.416 33.333 0.00 0.00 0.00 3.85
1494 1557 8.578308 TTTGCACATTGTCTTTTCATTCTTAG 57.422 30.769 0.00 0.00 0.00 2.18
1915 1990 5.949735 ACGTATTTTGCCCTGAATTTACAG 58.050 37.500 0.00 0.00 37.61 2.74
1964 2041 3.181467 TGTGTGAAAAAGCCCCAGATTTG 60.181 43.478 0.00 0.00 30.45 2.32
1995 2072 0.327867 TCAAGGCCTGGGAGGATGAT 60.328 55.000 5.69 0.00 37.67 2.45
1996 2073 0.549902 TTCAAGGCCTGGGAGGATGA 60.550 55.000 5.69 0.19 37.67 2.92
2033 2110 7.065324 GGATGAAATACGTTGAAATGTGACCTA 59.935 37.037 0.00 0.00 0.00 3.08
2034 2111 6.128007 GGATGAAATACGTTGAAATGTGACCT 60.128 38.462 0.00 0.00 0.00 3.85
2179 2257 2.003301 GAGAATGGACGTTTGGCTCTC 58.997 52.381 0.00 0.00 0.00 3.20
2191 2269 1.541118 TGTGGGCTGGGAGAATGGA 60.541 57.895 0.00 0.00 0.00 3.41
2194 2272 0.033796 CATGTGTGGGCTGGGAGAAT 60.034 55.000 0.00 0.00 0.00 2.40
2245 2323 5.198207 TCGTTGTGATCCACTATCCTTAGA 58.802 41.667 0.00 0.00 35.11 2.10
3050 3224 5.758924 CAAACAGATGATCAGGCATACATG 58.241 41.667 0.09 0.00 0.00 3.21
3316 3490 9.353999 GGAGTAAAAATGTAAAATGTGATGACC 57.646 33.333 0.00 0.00 0.00 4.02
3641 3816 5.812127 GGGCTTTAATCAAGTGCCTTATTTG 59.188 40.000 0.00 0.00 42.84 2.32
3745 3922 1.963515 GAACACCATGGAGGCAAAACT 59.036 47.619 21.47 0.00 43.14 2.66
3997 4175 3.055891 GGTTGCAACAAAATATGGCCTCT 60.056 43.478 29.55 0.00 0.00 3.69
4449 4627 9.846248 GCATGAATAGGAATACAACCAAATATC 57.154 33.333 0.00 0.00 0.00 1.63
4601 4779 2.770232 CCCGGTAGGTTCTCCAATAAGT 59.230 50.000 0.00 0.00 35.89 2.24
4940 5118 4.135153 CCAGTGGAGTCCGGCGAG 62.135 72.222 9.30 0.00 0.00 5.03
5004 5182 2.026822 AGCTGAATTCCGTGGAATCTGT 60.027 45.455 14.24 0.00 43.26 3.41
5050 5228 4.082300 ACCAGATTATTCAAATGCAACGCA 60.082 37.500 0.00 0.00 44.86 5.24
5070 5248 3.283751 ACAAAAATGGACTGTTCGACCA 58.716 40.909 0.00 0.00 41.58 4.02
5221 5399 4.276926 ACAAAAGGATCTTCAAGTCAGCAC 59.723 41.667 0.00 0.00 0.00 4.40
5329 5508 0.746923 CAGGCAGCAGCATAGAAGCA 60.747 55.000 2.65 0.00 44.61 3.91
5349 5528 4.099824 CAAAGAAAACACACCGGTTACAC 58.900 43.478 2.97 0.00 0.00 2.90
5476 5658 4.058817 GTCAATCTTCTCGGAGTTTGTGT 58.941 43.478 4.69 0.00 31.44 3.72
5484 5666 2.028112 CCAACCTGTCAATCTTCTCGGA 60.028 50.000 0.00 0.00 0.00 4.55
5516 5698 6.732896 ATCTCACAGGGTATTAACAGTAGG 57.267 41.667 0.00 0.00 0.00 3.18
5532 5715 5.221521 GGACTTGGCTCATACATATCTCACA 60.222 44.000 0.00 0.00 0.00 3.58
5562 5745 5.116983 CACACACGCCAAATCATAAAACTTC 59.883 40.000 0.00 0.00 0.00 3.01
5618 5813 5.245531 TGAATGGAGGTAACAGCAAGTTAG 58.754 41.667 2.44 0.00 43.06 2.34
5627 5822 6.785076 TGGTTATTTCTGAATGGAGGTAACA 58.215 36.000 0.00 0.00 41.41 2.41
5628 5823 7.535997 GTTGGTTATTTCTGAATGGAGGTAAC 58.464 38.462 0.00 0.00 0.00 2.50
5641 5836 7.987649 TGAACTAAAACACGTTGGTTATTTCT 58.012 30.769 0.00 0.00 0.00 2.52
5650 5845 9.445786 AAATAACTGATGAACTAAAACACGTTG 57.554 29.630 0.00 0.00 0.00 4.10
5651 5846 9.659830 GAAATAACTGATGAACTAAAACACGTT 57.340 29.630 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.