Multiple sequence alignment - TraesCS4D01G161700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G161700 chr4D 100.000 7228 0 0 1 7228 241794104 241801331 0.000000e+00 13348.0
1 TraesCS4D01G161700 chr4D 85.959 292 35 3 6797 7086 329463328 329463615 2.530000e-79 307.0
2 TraesCS4D01G161700 chr4D 91.473 129 11 0 3194 3322 43056393 43056265 2.070000e-40 178.0
3 TraesCS4D01G161700 chr4D 90.984 122 11 0 1194 1315 100229535 100229656 1.610000e-36 165.0
4 TraesCS4D01G161700 chr4D 87.692 130 13 3 3194 3322 9258976 9259103 1.620000e-31 148.0
5 TraesCS4D01G161700 chr4D 100.000 31 0 0 1164 1194 422555126 422555096 2.820000e-04 58.4
6 TraesCS4D01G161700 chr4B 96.859 5539 129 30 817 6329 300940159 300934640 0.000000e+00 9223.0
7 TraesCS4D01G161700 chr4B 90.566 106 8 2 7083 7186 300934410 300934305 9.780000e-29 139.0
8 TraesCS4D01G161700 chr4B 85.714 133 11 6 3196 3322 17264583 17264713 4.550000e-27 134.0
9 TraesCS4D01G161700 chr4B 97.101 69 1 1 754 822 300941506 300941439 1.650000e-21 115.0
10 TraesCS4D01G161700 chr4B 97.959 49 1 0 7180 7228 300884657 300884609 1.290000e-12 86.1
11 TraesCS4D01G161700 chr4B 91.071 56 2 3 6439 6491 652394577 652394522 1.010000e-08 73.1
12 TraesCS4D01G161700 chr4B 89.286 56 3 1 6439 6491 656649272 656649217 4.680000e-07 67.6
13 TraesCS4D01G161700 chr4A 95.003 3402 116 18 3402 6772 356554479 356551101 0.000000e+00 5291.0
14 TraesCS4D01G161700 chr4A 96.592 2406 67 9 940 3341 356556880 356554486 0.000000e+00 3975.0
15 TraesCS4D01G161700 chr4A 86.861 274 29 4 6798 7069 678406037 678406305 4.240000e-77 300.0
16 TraesCS4D01G161700 chr4A 93.077 130 7 1 7083 7210 356551089 356550960 9.570000e-44 189.0
17 TraesCS4D01G161700 chr4A 90.076 131 11 1 3194 3322 556838442 556838572 1.250000e-37 169.0
18 TraesCS4D01G161700 chr4A 90.090 111 11 0 5689 5799 74167977 74168087 2.100000e-30 145.0
19 TraesCS4D01G161700 chr4A 87.654 81 7 2 5477 5556 87974006 87973928 2.780000e-14 91.6
20 TraesCS4D01G161700 chr4A 89.189 74 7 1 5480 5553 87973928 87974000 2.780000e-14 91.6
21 TraesCS4D01G161700 chr4A 92.982 57 3 1 828 884 356556937 356556882 1.670000e-11 82.4
22 TraesCS4D01G161700 chr7A 85.733 764 97 11 1 756 174271854 174272613 0.000000e+00 797.0
23 TraesCS4D01G161700 chr7A 90.698 129 11 1 1194 1321 476915690 476915818 3.470000e-38 171.0
24 TraesCS4D01G161700 chr1D 85.583 763 102 8 1 756 216045426 216044665 0.000000e+00 793.0
25 TraesCS4D01G161700 chr1D 90.164 122 10 2 3185 3306 269359076 269358957 2.700000e-34 158.0
26 TraesCS4D01G161700 chr1D 92.157 102 7 1 3225 3326 52343620 52343520 7.560000e-30 143.0
27 TraesCS4D01G161700 chr7D 85.190 763 105 7 1 756 635087273 635088034 0.000000e+00 776.0
28 TraesCS4D01G161700 chr7D 85.046 769 100 13 1 757 164484259 164485024 0.000000e+00 769.0
29 TraesCS4D01G161700 chr7D 84.615 767 100 16 1 756 192686978 192687737 0.000000e+00 747.0
30 TraesCS4D01G161700 chr7D 86.054 294 34 4 6797 7087 509235901 509235612 7.040000e-80 309.0
31 TraesCS4D01G161700 chr7D 85.223 291 36 3 6797 7084 550980004 550979718 7.090000e-75 292.0
32 TraesCS4D01G161700 chr7D 93.130 131 9 0 3192 3322 353935757 353935887 7.400000e-45 193.0
33 TraesCS4D01G161700 chr7D 90.741 54 2 1 6436 6486 167548365 167548418 1.300000e-07 69.4
34 TraesCS4D01G161700 chr3B 85.190 763 99 12 1 754 772707023 772706266 0.000000e+00 771.0
35 TraesCS4D01G161700 chr3B 100.000 30 0 0 1164 1193 764698108 764698079 1.000000e-03 56.5
36 TraesCS4D01G161700 chr7B 85.112 759 92 20 11 756 490712047 490711297 0.000000e+00 756.0
37 TraesCS4D01G161700 chr7B 93.694 111 7 0 5692 5802 354265225 354265335 4.490000e-37 167.0
38 TraesCS4D01G161700 chr7B 95.876 97 4 0 3192 3288 297377807 297377711 2.700000e-34 158.0
39 TraesCS4D01G161700 chr3D 85.112 759 90 16 7 754 103674135 103673389 0.000000e+00 754.0
40 TraesCS4D01G161700 chr3D 85.473 296 34 4 6797 7087 111181232 111181523 4.240000e-77 300.0
41 TraesCS4D01G161700 chr3D 86.525 141 19 0 1180 1320 30986678 30986538 9.710000e-34 156.0
42 TraesCS4D01G161700 chr5D 84.575 765 106 9 1 756 477840432 477841193 0.000000e+00 749.0
43 TraesCS4D01G161700 chr5D 85.794 359 39 7 3384 3736 494756707 494756355 3.190000e-98 370.0
44 TraesCS4D01G161700 chr5D 87.543 289 30 2 6798 7084 70678357 70678641 5.410000e-86 329.0
45 TraesCS4D01G161700 chr5D 90.551 127 12 0 1194 1320 150835688 150835562 1.250000e-37 169.0
46 TraesCS4D01G161700 chr5D 91.667 48 4 0 5477 5524 137975004 137975051 4.680000e-07 67.6
47 TraesCS4D01G161700 chr5D 93.023 43 3 0 5480 5522 137975105 137975063 6.050000e-06 63.9
48 TraesCS4D01G161700 chr6D 86.780 295 30 4 6797 7086 268058402 268058692 3.250000e-83 320.0
49 TraesCS4D01G161700 chr6D 86.154 130 16 2 3194 3322 193238409 193238281 9.780000e-29 139.0
50 TraesCS4D01G161700 chr6D 83.459 133 17 5 3192 3322 199649310 199649439 1.270000e-22 119.0
51 TraesCS4D01G161700 chr6D 83.333 132 17 5 3194 3323 214552079 214552207 4.580000e-22 117.0
52 TraesCS4D01G161700 chr6D 88.136 59 4 1 6436 6491 471069873 471069931 4.680000e-07 67.6
53 TraesCS4D01G161700 chr6D 86.667 60 5 1 6435 6491 203859063 203859004 6.050000e-06 63.9
54 TraesCS4D01G161700 chr6A 86.348 293 30 6 6797 7086 376481784 376482069 1.960000e-80 311.0
55 TraesCS4D01G161700 chr6A 94.444 36 2 0 1161 1196 583388475 583388440 1.000000e-03 56.5
56 TraesCS4D01G161700 chr5B 84.722 288 38 2 6797 7082 528378895 528379178 4.270000e-72 283.0
57 TraesCS4D01G161700 chr5B 92.661 109 7 1 5692 5800 61404 61297 9.710000e-34 156.0
58 TraesCS4D01G161700 chr5B 90.826 109 10 0 5692 5800 603815866 603815758 5.840000e-31 147.0
59 TraesCS4D01G161700 chr5B 86.400 125 15 2 5684 5807 274714937 274714814 1.260000e-27 135.0
60 TraesCS4D01G161700 chr5B 84.091 88 6 2 5480 5559 187046448 187046361 2.160000e-10 78.7
61 TraesCS4D01G161700 chr5B 88.136 59 4 1 6436 6491 216845479 216845537 4.680000e-07 67.6
62 TraesCS4D01G161700 chr5A 83.193 238 34 4 3502 3736 618489852 618489618 5.680000e-51 213.0
63 TraesCS4D01G161700 chr5A 87.097 124 15 1 5680 5802 410499786 410499909 9.780000e-29 139.0
64 TraesCS4D01G161700 chr5A 93.548 93 6 0 3408 3500 618597565 618597473 9.780000e-29 139.0
65 TraesCS4D01G161700 chr5A 93.443 61 4 0 3089 3149 618597663 618597603 2.780000e-14 91.6
66 TraesCS4D01G161700 chr5A 84.091 88 6 2 5480 5559 185649702 185649789 2.160000e-10 78.7
67 TraesCS4D01G161700 chr5A 93.182 44 3 0 1668 1711 408182808 408182851 1.680000e-06 65.8
68 TraesCS4D01G161700 chr5A 100.000 30 0 0 1164 1193 52005189 52005160 1.000000e-03 56.5
69 TraesCS4D01G161700 chr1B 90.141 142 11 3 3185 3325 369606797 369606936 1.600000e-41 182.0
70 TraesCS4D01G161700 chr1B 91.111 45 4 0 5477 5521 332842646 332842690 2.180000e-05 62.1
71 TraesCS4D01G161700 chr2B 86.986 146 19 0 1169 1314 278437189 278437044 1.610000e-36 165.0
72 TraesCS4D01G161700 chr2B 84.516 155 18 3 1169 1322 69007788 69007639 1.620000e-31 148.0
73 TraesCS4D01G161700 chr2B 85.000 140 17 3 3184 3322 313575553 313575689 9.780000e-29 139.0
74 TraesCS4D01G161700 chrUn 90.909 121 11 0 1194 1314 451646524 451646644 5.800000e-36 163.0
75 TraesCS4D01G161700 chrUn 87.826 115 12 2 3194 3307 119851136 119851249 4.550000e-27 134.0
76 TraesCS4D01G161700 chrUn 89.216 102 9 2 3223 3323 231460748 231460848 7.610000e-25 126.0
77 TraesCS4D01G161700 chrUn 86.066 122 12 5 3204 3323 275537956 275538074 7.610000e-25 126.0
78 TraesCS4D01G161700 chrUn 86.066 122 12 5 3204 3323 418475531 418475649 7.610000e-25 126.0
79 TraesCS4D01G161700 chrUn 85.950 121 12 5 3204 3322 275536890 275537007 2.740000e-24 124.0
80 TraesCS4D01G161700 chrUn 89.109 101 9 2 3223 3322 398232527 398232428 2.740000e-24 124.0
81 TraesCS4D01G161700 chrUn 88.119 101 10 2 3223 3322 231459662 231459761 1.270000e-22 119.0
82 TraesCS4D01G161700 chr2A 90.435 115 10 1 5686 5800 101996059 101996172 4.520000e-32 150.0
83 TraesCS4D01G161700 chr2A 86.667 105 13 1 1214 1318 648325338 648325235 1.650000e-21 115.0
84 TraesCS4D01G161700 chr6B 85.496 131 15 4 3194 3322 396933153 396933281 4.550000e-27 134.0
85 TraesCS4D01G161700 chr6B 86.508 126 12 5 3194 3317 625370663 625370541 4.550000e-27 134.0
86 TraesCS4D01G161700 chr2D 85.714 126 14 3 3184 3308 278366127 278366249 5.880000e-26 130.0
87 TraesCS4D01G161700 chr2D 89.091 55 3 1 6439 6490 3034762 3034708 1.680000e-06 65.8
88 TraesCS4D01G161700 chr1A 85.294 68 4 4 6429 6491 58933971 58933905 1.680000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G161700 chr4D 241794104 241801331 7227 False 13348.00 13348 100.0000 1 7228 1 chr4D.!!$F3 7227
1 TraesCS4D01G161700 chr4B 300934305 300941506 7201 True 3159.00 9223 94.8420 754 7186 3 chr4B.!!$R4 6432
2 TraesCS4D01G161700 chr4A 356550960 356556937 5977 True 2384.35 5291 94.4135 828 7210 4 chr4A.!!$R2 6382
3 TraesCS4D01G161700 chr7A 174271854 174272613 759 False 797.00 797 85.7330 1 756 1 chr7A.!!$F1 755
4 TraesCS4D01G161700 chr1D 216044665 216045426 761 True 793.00 793 85.5830 1 756 1 chr1D.!!$R2 755
5 TraesCS4D01G161700 chr7D 635087273 635088034 761 False 776.00 776 85.1900 1 756 1 chr7D.!!$F5 755
6 TraesCS4D01G161700 chr7D 164484259 164485024 765 False 769.00 769 85.0460 1 757 1 chr7D.!!$F1 756
7 TraesCS4D01G161700 chr7D 192686978 192687737 759 False 747.00 747 84.6150 1 756 1 chr7D.!!$F3 755
8 TraesCS4D01G161700 chr3B 772706266 772707023 757 True 771.00 771 85.1900 1 754 1 chr3B.!!$R2 753
9 TraesCS4D01G161700 chr7B 490711297 490712047 750 True 756.00 756 85.1120 11 756 1 chr7B.!!$R2 745
10 TraesCS4D01G161700 chr3D 103673389 103674135 746 True 754.00 754 85.1120 7 754 1 chr3D.!!$R2 747
11 TraesCS4D01G161700 chr5D 477840432 477841193 761 False 749.00 749 84.5750 1 756 1 chr5D.!!$F3 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 843 0.036875 CCAACTCCAACTCCCCTCAC 59.963 60.000 0.0 0.0 0.00 3.51 F
823 844 0.764890 CAACTCCAACTCCCCTCACA 59.235 55.000 0.0 0.0 0.00 3.58 F
824 845 0.765510 AACTCCAACTCCCCTCACAC 59.234 55.000 0.0 0.0 0.00 3.82 F
825 846 1.293498 CTCCAACTCCCCTCACACG 59.707 63.158 0.0 0.0 0.00 4.49 F
1598 2909 1.374758 CAACCTGTCTGGGAGTCGC 60.375 63.158 0.0 0.0 41.11 5.19 F
2202 3513 2.108362 GACGGGGCAGGGTTATCG 59.892 66.667 0.0 0.0 0.00 2.92 F
2404 3715 2.607635 CCTCGATGGTGGAATACAAACG 59.392 50.000 0.0 0.0 0.00 3.60 F
3635 4951 3.005554 ACGAGTTTTCTCTGCCATGATG 58.994 45.455 0.0 0.0 44.16 3.07 F
5486 6836 2.009774 ACATGCATTCAACTACTCCGC 58.990 47.619 0.0 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 3487 0.106719 CCTGCCCCGTCCACATTTAT 60.107 55.000 0.00 0.00 0.00 1.40 R
2390 3701 3.275999 ACATAGGCGTTTGTATTCCACC 58.724 45.455 0.40 0.00 0.00 4.61 R
2772 4084 5.294306 ACAAATCAGATAGTATTGCACCACG 59.706 40.000 0.00 0.00 0.00 4.94 R
3341 4654 4.142773 ACTTGAAAACGCGAGTCTTTCAAA 60.143 37.500 26.43 17.75 46.80 2.69 R
3609 4925 1.195674 GGCAGAGAAAACTCGTTCAGC 59.804 52.381 0.00 0.00 0.00 4.26 R
4400 5732 1.967319 ACGCCACAAGAAATGAGTGT 58.033 45.000 0.00 0.00 0.00 3.55 R
4824 6158 1.337703 TGGCACAAGATGTTGAAGCAC 59.662 47.619 19.92 12.83 38.86 4.40 R
5612 6962 0.037232 GACCCAGGTTCAAGGACTCG 60.037 60.000 0.00 0.00 0.00 4.18 R
6581 7934 0.032540 GGGAGGTTTTTGCACTGCAG 59.967 55.000 13.48 13.48 40.61 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 0.441145 GCGCCGAAATACTTTGTCGT 59.559 50.000 0.00 0.00 32.93 4.34
128 129 1.156736 CAGTCGATGCCGGTTCTTTT 58.843 50.000 1.90 0.00 36.24 2.27
137 138 1.336755 GCCGGTTCTTTTGCTTTCAGA 59.663 47.619 1.90 0.00 0.00 3.27
231 232 0.103937 GAGATGCTCTTCGTCCTGGG 59.896 60.000 0.00 0.00 0.00 4.45
309 311 0.729116 CATCGCCGAGCAGACAAAAT 59.271 50.000 0.00 0.00 0.00 1.82
442 444 1.605058 CCTCTCTCTTTTCCGGCGGA 61.605 60.000 27.46 27.46 0.00 5.54
446 448 1.681793 CTCTCTTTTCCGGCGGAGATA 59.318 52.381 29.30 12.26 34.84 1.98
461 464 2.026449 GGAGATAGGCCTACTAGCGGTA 60.026 54.545 16.61 0.00 42.81 4.02
463 466 1.744522 GATAGGCCTACTAGCGGTAGC 59.255 57.143 16.61 8.24 44.75 3.58
527 537 0.549902 TGAGGAGGGGGCAAATCTGA 60.550 55.000 0.00 0.00 0.00 3.27
555 566 2.737252 GTCTTACTTTTCGCCTGACAGG 59.263 50.000 17.83 17.83 38.80 4.00
560 571 1.990160 TTTTCGCCTGACAGGGTGGT 61.990 55.000 23.09 0.00 35.37 4.16
586 597 2.032987 GGTTTTCCCTTCCGCCGA 59.967 61.111 0.00 0.00 0.00 5.54
642 656 3.822192 GATCGCCGGGCCCAAAAC 61.822 66.667 24.92 6.41 0.00 2.43
655 669 1.373246 CAAAACCGTACCGAGCCGA 60.373 57.895 0.00 0.00 0.00 5.54
656 670 0.738412 CAAAACCGTACCGAGCCGAT 60.738 55.000 0.00 0.00 0.00 4.18
686 700 1.837051 TTCTGGGAGCGTGACTGGT 60.837 57.895 0.00 0.00 0.00 4.00
735 756 3.089838 CTGAGGGCATGTTGGGGA 58.910 61.111 0.00 0.00 0.00 4.81
743 764 4.778143 ATGTTGGGGACGCGGCTC 62.778 66.667 13.91 8.12 0.00 4.70
757 778 0.992802 CGGCTCGAGTTGCTCTAAAC 59.007 55.000 15.13 0.00 0.00 2.01
758 779 1.360820 GGCTCGAGTTGCTCTAAACC 58.639 55.000 15.13 0.00 0.00 3.27
761 782 0.245539 TCGAGTTGCTCTAAACCCCG 59.754 55.000 0.00 0.00 0.00 5.73
770 791 4.538746 GCTCTAAACCCCGAGCTAATAT 57.461 45.455 4.17 0.00 46.87 1.28
822 843 0.036875 CCAACTCCAACTCCCCTCAC 59.963 60.000 0.00 0.00 0.00 3.51
823 844 0.764890 CAACTCCAACTCCCCTCACA 59.235 55.000 0.00 0.00 0.00 3.58
824 845 0.765510 AACTCCAACTCCCCTCACAC 59.234 55.000 0.00 0.00 0.00 3.82
825 846 1.293498 CTCCAACTCCCCTCACACG 59.707 63.158 0.00 0.00 0.00 4.49
872 2180 3.862402 CGTCGTCGTCCTCTCCCG 61.862 72.222 0.00 0.00 0.00 5.14
1122 2430 4.477780 CCTCGAGTTACTGTCTCAGTTTC 58.522 47.826 12.31 3.96 42.59 2.78
1246 2555 9.570488 GACGTATTTTAGAGTGTAGATTCACTT 57.430 33.333 0.00 0.00 46.81 3.16
1256 2565 8.317679 AGAGTGTAGATTCACTTATTTTGCTCT 58.682 33.333 0.98 0.00 46.81 4.09
1263 2572 9.236006 AGATTCACTTATTTTGCTCTGTATGTT 57.764 29.630 0.00 0.00 0.00 2.71
1268 2577 4.685169 ATTTTGCTCTGTATGTTGTCCG 57.315 40.909 0.00 0.00 0.00 4.79
1450 2760 5.051891 TGTTACTACTTCAGTTACTCGCC 57.948 43.478 0.00 0.00 37.61 5.54
1480 2790 8.202137 GTGTTATACTGGTATAGCAAAGGAGAA 58.798 37.037 15.29 0.00 39.68 2.87
1598 2909 1.374758 CAACCTGTCTGGGAGTCGC 60.375 63.158 0.00 0.00 41.11 5.19
1945 3256 7.991084 ATTCAGATTTTCATCACAGAGTTGA 57.009 32.000 0.00 0.00 0.00 3.18
2162 3473 4.706842 AGTATCGGCCATTGAAACCTAT 57.293 40.909 2.24 0.00 0.00 2.57
2176 3487 9.421806 CATTGAAACCTATAAGCACAATTTCAA 57.578 29.630 10.59 10.59 44.25 2.69
2202 3513 2.108362 GACGGGGCAGGGTTATCG 59.892 66.667 0.00 0.00 0.00 2.92
2390 3701 4.582656 AGGTTAATCTGAGTCTCCTCGATG 59.417 45.833 0.00 0.00 40.85 3.84
2404 3715 2.607635 CCTCGATGGTGGAATACAAACG 59.392 50.000 0.00 0.00 0.00 3.60
2645 3957 4.092675 GCTGACAGCATTCTTCAGTCTTAC 59.907 45.833 22.62 0.00 41.89 2.34
2648 3960 6.935167 TGACAGCATTCTTCAGTCTTACATA 58.065 36.000 0.00 0.00 0.00 2.29
3010 4322 4.397417 ACATCATTTCAGTAGGCTCTTTGC 59.603 41.667 0.00 0.00 41.94 3.68
3297 4610 7.309928 GGAAACATAGCCTAATAGGACTCCTAC 60.310 44.444 11.13 0.00 39.10 3.18
3299 4612 6.621394 ACATAGCCTAATAGGACTCCTACAA 58.379 40.000 11.13 0.00 39.10 2.41
3300 4613 7.249715 ACATAGCCTAATAGGACTCCTACAAT 58.750 38.462 11.13 0.22 39.10 2.71
3387 4700 4.988065 GCCTCGTGCAGTGTTCTA 57.012 55.556 0.00 0.00 40.77 2.10
3635 4951 3.005554 ACGAGTTTTCTCTGCCATGATG 58.994 45.455 0.00 0.00 44.16 3.07
3881 5211 4.980590 TGTTGTGCTCCATTTTATAAGCG 58.019 39.130 0.00 0.00 37.57 4.68
3884 5214 5.888691 TGTGCTCCATTTTATAAGCGAAA 57.111 34.783 0.00 0.00 37.57 3.46
3956 5287 5.455899 GCATGAGAATGGGAATCTAGACCTT 60.456 44.000 0.00 0.00 0.00 3.50
4447 5780 5.178623 TGTGTGTTTAGTAGTTGCATAGCAC 59.821 40.000 0.00 0.00 38.71 4.40
4680 6013 3.331889 ACCCAGTGGACATCAGAATTCTT 59.668 43.478 11.95 0.00 34.81 2.52
4824 6158 3.721087 AACTCCCTTGGTGGTATTGAG 57.279 47.619 0.00 0.00 0.00 3.02
5046 6393 7.389884 TCCTCATCAGATAAATTTCTAGCATGC 59.610 37.037 10.51 10.51 0.00 4.06
5047 6394 7.174426 CCTCATCAGATAAATTTCTAGCATGCA 59.826 37.037 21.98 5.01 0.00 3.96
5048 6395 8.631480 TCATCAGATAAATTTCTAGCATGCAT 57.369 30.769 21.98 7.68 0.00 3.96
5049 6396 8.512138 TCATCAGATAAATTTCTAGCATGCATG 58.488 33.333 22.70 22.70 0.00 4.06
5276 6623 2.872925 CATTCGCGCTTGTGCAGC 60.873 61.111 5.56 0.00 46.31 5.25
5307 6654 7.252612 TGTACCTGATATTTGGAAACTCTCA 57.747 36.000 2.48 0.00 0.00 3.27
5383 6730 6.870965 AGTTTTTGGCGTTATTGCAATTATCA 59.129 30.769 18.75 6.17 36.28 2.15
5417 6764 9.691362 GGTAAAATTTCTGCTATTTCTGTTTGA 57.309 29.630 0.00 0.00 0.00 2.69
5484 6834 3.411415 GCACATGCATTCAACTACTCC 57.589 47.619 0.00 0.00 41.59 3.85
5485 6835 2.223112 GCACATGCATTCAACTACTCCG 60.223 50.000 0.00 0.00 41.59 4.63
5486 6836 2.009774 ACATGCATTCAACTACTCCGC 58.990 47.619 0.00 0.00 0.00 5.54
5529 6879 6.092944 ACGTTTTAGAGACATGACACAAAACA 59.907 34.615 20.29 0.00 35.28 2.83
5605 6955 7.309255 GGAAAGAAGTCCCCTGTTTTATTCTTC 60.309 40.741 0.00 0.00 35.17 2.87
5612 6962 6.149640 GTCCCCTGTTTTATTCTTCTGAAGAC 59.850 42.308 19.17 8.42 37.23 3.01
5626 6976 2.297597 CTGAAGACGAGTCCTTGAACCT 59.702 50.000 0.00 0.00 0.00 3.50
5836 7187 2.938451 TGATAAAGGCTTGCATCACTCG 59.062 45.455 16.64 0.00 0.00 4.18
5839 7190 0.674895 AAGGCTTGCATCACTCGACC 60.675 55.000 0.00 0.00 0.00 4.79
5843 7194 0.792640 CTTGCATCACTCGACCACAC 59.207 55.000 0.00 0.00 0.00 3.82
5957 7308 6.545666 TCTTGTTGCTCTGTTTTTCTAATCCA 59.454 34.615 0.00 0.00 0.00 3.41
6116 7468 3.941483 CACCATGTTTGTCCTACCAGATC 59.059 47.826 0.00 0.00 0.00 2.75
6219 7571 4.082300 TGTTGTCAGCAAAAGCTTTCAGAA 60.082 37.500 13.10 0.00 36.22 3.02
6271 7624 3.445450 TGCTGCAGTCCTTTTGTAACAAA 59.555 39.130 16.64 0.00 0.00 2.83
6399 7752 4.188937 ACGAGTATGTAGGAATACCCCA 57.811 45.455 0.00 0.00 34.16 4.96
6508 7861 4.330944 AGAGTACCACAAAACATGACGA 57.669 40.909 0.00 0.00 0.00 4.20
6510 7863 4.056050 GAGTACCACAAAACATGACGAGT 58.944 43.478 0.00 0.00 0.00 4.18
6511 7864 4.448210 AGTACCACAAAACATGACGAGTT 58.552 39.130 0.00 0.00 0.00 3.01
6512 7865 3.963383 ACCACAAAACATGACGAGTTC 57.037 42.857 0.00 0.00 0.00 3.01
6513 7866 2.286833 ACCACAAAACATGACGAGTTCG 59.713 45.455 0.00 0.00 46.33 3.95
6514 7867 2.298300 CACAAAACATGACGAGTTCGC 58.702 47.619 0.00 0.00 44.43 4.70
6515 7868 1.937223 ACAAAACATGACGAGTTCGCA 59.063 42.857 0.00 1.62 44.43 5.10
6517 7870 0.865769 AAACATGACGAGTTCGCACC 59.134 50.000 0.00 0.00 44.43 5.01
6518 7871 1.282248 AACATGACGAGTTCGCACCG 61.282 55.000 0.00 0.00 44.43 4.94
6519 7872 2.809601 ATGACGAGTTCGCACCGC 60.810 61.111 0.73 0.00 44.43 5.68
6572 7925 1.045911 ACTAGGGCTGCCAGCTAGTC 61.046 60.000 23.68 6.32 41.99 2.59
6600 7953 0.032540 CTGCAGTGCAAAAACCTCCC 59.967 55.000 20.22 0.00 38.41 4.30
6612 7965 2.437359 CCTCCCAAGGCTTCAGCG 60.437 66.667 0.00 0.00 43.26 5.18
6619 7972 0.882042 CAAGGCTTCAGCGTCAGTGT 60.882 55.000 0.00 0.00 43.26 3.55
6660 8013 4.404654 GGCGTTTTGGCTCTGGCG 62.405 66.667 0.00 0.00 40.72 5.69
6674 8027 3.766644 TGGCGTCCAGATGATCTTG 57.233 52.632 0.00 0.00 0.00 3.02
6712 8065 2.361757 GCTGCTTCTCTAGATCTGAGCA 59.638 50.000 5.18 11.46 0.00 4.26
6759 8112 5.478332 AGTTGGCTTAGAAAATCAGGGAAAG 59.522 40.000 0.00 0.00 0.00 2.62
6760 8113 3.763897 TGGCTTAGAAAATCAGGGAAAGC 59.236 43.478 0.00 0.00 37.67 3.51
6761 8114 3.763897 GGCTTAGAAAATCAGGGAAAGCA 59.236 43.478 6.50 0.00 39.60 3.91
6762 8115 4.220602 GGCTTAGAAAATCAGGGAAAGCAA 59.779 41.667 6.50 0.00 39.60 3.91
6763 8116 5.105187 GGCTTAGAAAATCAGGGAAAGCAAT 60.105 40.000 6.50 0.00 39.60 3.56
6764 8117 6.401394 GCTTAGAAAATCAGGGAAAGCAATT 58.599 36.000 0.00 0.00 38.15 2.32
6765 8118 7.363793 GGCTTAGAAAATCAGGGAAAGCAATTA 60.364 37.037 6.50 0.00 39.60 1.40
6766 8119 8.034804 GCTTAGAAAATCAGGGAAAGCAATTAA 58.965 33.333 0.00 0.00 38.15 1.40
6768 8121 9.874205 TTAGAAAATCAGGGAAAGCAATTAATG 57.126 29.630 0.00 0.00 0.00 1.90
6769 8122 8.137745 AGAAAATCAGGGAAAGCAATTAATGA 57.862 30.769 0.00 0.00 0.00 2.57
6770 8123 8.765517 AGAAAATCAGGGAAAGCAATTAATGAT 58.234 29.630 0.00 0.00 0.00 2.45
6797 8150 9.104965 GCAATTAATGATTATATACGGTGGCTA 57.895 33.333 0.00 0.00 0.00 3.93
6801 8154 7.719871 AATGATTATATACGGTGGCTAGACT 57.280 36.000 0.00 0.00 0.00 3.24
6802 8155 8.818622 AATGATTATATACGGTGGCTAGACTA 57.181 34.615 0.00 0.00 0.00 2.59
6803 8156 7.860918 TGATTATATACGGTGGCTAGACTAG 57.139 40.000 5.03 5.03 0.00 2.57
6814 8167 3.104843 GCTAGACTAGCCACAATGAGG 57.895 52.381 21.82 0.00 45.95 3.86
6815 8168 2.695666 GCTAGACTAGCCACAATGAGGA 59.304 50.000 21.82 0.00 45.95 3.71
6816 8169 3.243704 GCTAGACTAGCCACAATGAGGAG 60.244 52.174 21.82 0.00 45.95 3.69
6817 8170 2.826488 AGACTAGCCACAATGAGGAGT 58.174 47.619 0.00 0.00 0.00 3.85
6818 8171 3.982516 AGACTAGCCACAATGAGGAGTA 58.017 45.455 0.00 0.00 0.00 2.59
6819 8172 4.353777 AGACTAGCCACAATGAGGAGTAA 58.646 43.478 0.00 0.00 0.00 2.24
6820 8173 4.160626 AGACTAGCCACAATGAGGAGTAAC 59.839 45.833 0.00 0.00 0.00 2.50
6821 8174 4.097418 ACTAGCCACAATGAGGAGTAACT 58.903 43.478 0.00 0.00 0.00 2.24
6822 8175 4.532521 ACTAGCCACAATGAGGAGTAACTT 59.467 41.667 0.00 0.00 0.00 2.66
6823 8176 5.720041 ACTAGCCACAATGAGGAGTAACTTA 59.280 40.000 0.00 0.00 0.00 2.24
6824 8177 5.700402 AGCCACAATGAGGAGTAACTTAT 57.300 39.130 0.00 0.00 0.00 1.73
6825 8178 6.808321 AGCCACAATGAGGAGTAACTTATA 57.192 37.500 0.00 0.00 0.00 0.98
6826 8179 7.380423 AGCCACAATGAGGAGTAACTTATAT 57.620 36.000 0.00 0.00 0.00 0.86
6827 8180 8.492415 AGCCACAATGAGGAGTAACTTATATA 57.508 34.615 0.00 0.00 0.00 0.86
6828 8181 8.589338 AGCCACAATGAGGAGTAACTTATATAG 58.411 37.037 0.00 0.00 0.00 1.31
6829 8182 8.585881 GCCACAATGAGGAGTAACTTATATAGA 58.414 37.037 0.00 0.00 0.00 1.98
6878 8231 9.756571 ACTCTATATTACTACCTCTACAATGGG 57.243 37.037 0.00 0.00 0.00 4.00
6879 8232 9.191479 CTCTATATTACTACCTCTACAATGGGG 57.809 40.741 0.00 0.00 0.00 4.96
6880 8233 8.908095 TCTATATTACTACCTCTACAATGGGGA 58.092 37.037 0.00 0.00 0.00 4.81
6881 8234 9.191479 CTATATTACTACCTCTACAATGGGGAG 57.809 40.741 0.00 0.00 37.12 4.30
6882 8235 3.778622 ACTACCTCTACAATGGGGAGT 57.221 47.619 0.00 0.00 39.29 3.85
6883 8236 4.894252 ACTACCTCTACAATGGGGAGTA 57.106 45.455 0.00 0.00 42.00 2.59
6884 8237 5.216665 ACTACCTCTACAATGGGGAGTAA 57.783 43.478 0.00 0.00 42.00 2.24
6885 8238 4.961099 ACTACCTCTACAATGGGGAGTAAC 59.039 45.833 0.00 0.00 42.00 2.50
6886 8239 3.798515 ACCTCTACAATGGGGAGTAACA 58.201 45.455 0.00 0.00 0.00 2.41
6887 8240 4.371681 ACCTCTACAATGGGGAGTAACAT 58.628 43.478 0.00 0.00 0.00 2.71
6888 8241 5.535029 ACCTCTACAATGGGGAGTAACATA 58.465 41.667 0.00 0.00 0.00 2.29
6889 8242 6.151049 ACCTCTACAATGGGGAGTAACATAT 58.849 40.000 0.00 0.00 0.00 1.78
6890 8243 6.043243 ACCTCTACAATGGGGAGTAACATATG 59.957 42.308 0.00 0.00 0.00 1.78
6891 8244 6.043243 CCTCTACAATGGGGAGTAACATATGT 59.957 42.308 1.41 1.41 0.00 2.29
6892 8245 6.826668 TCTACAATGGGGAGTAACATATGTG 58.173 40.000 9.63 0.00 0.00 3.21
6893 8246 5.450818 ACAATGGGGAGTAACATATGTGT 57.549 39.130 9.63 2.63 41.28 3.72
6894 8247 5.192927 ACAATGGGGAGTAACATATGTGTG 58.807 41.667 9.63 0.00 38.92 3.82
6895 8248 3.924114 TGGGGAGTAACATATGTGTGG 57.076 47.619 9.63 0.00 38.92 4.17
6896 8249 3.186283 TGGGGAGTAACATATGTGTGGT 58.814 45.455 9.63 0.00 38.92 4.16
6897 8250 3.054728 TGGGGAGTAACATATGTGTGGTG 60.055 47.826 9.63 0.00 38.92 4.17
6898 8251 3.054655 GGGGAGTAACATATGTGTGGTGT 60.055 47.826 9.63 0.00 38.92 4.16
6899 8252 4.189231 GGGAGTAACATATGTGTGGTGTC 58.811 47.826 9.63 1.25 38.92 3.67
6900 8253 4.323180 GGGAGTAACATATGTGTGGTGTCA 60.323 45.833 9.63 0.00 38.92 3.58
6901 8254 5.428253 GGAGTAACATATGTGTGGTGTCAT 58.572 41.667 9.63 0.00 38.92 3.06
6902 8255 5.294306 GGAGTAACATATGTGTGGTGTCATG 59.706 44.000 9.63 0.00 38.92 3.07
6903 8256 4.635765 AGTAACATATGTGTGGTGTCATGC 59.364 41.667 9.63 0.00 38.92 4.06
6904 8257 3.070476 ACATATGTGTGGTGTCATGCA 57.930 42.857 7.78 0.00 37.14 3.96
6905 8258 3.419943 ACATATGTGTGGTGTCATGCAA 58.580 40.909 7.78 0.00 37.14 4.08
6906 8259 3.191162 ACATATGTGTGGTGTCATGCAAC 59.809 43.478 7.78 0.00 37.14 4.17
6907 8260 1.689984 ATGTGTGGTGTCATGCAACA 58.310 45.000 4.08 4.08 43.58 3.33
6946 8299 9.601217 AGTTGTAGATTCATCTTGTATTGGTAC 57.399 33.333 0.00 0.00 38.32 3.34
6947 8300 8.540492 GTTGTAGATTCATCTTGTATTGGTACG 58.460 37.037 0.00 0.00 38.32 3.67
6948 8301 7.778083 TGTAGATTCATCTTGTATTGGTACGT 58.222 34.615 0.00 0.00 38.32 3.57
6949 8302 7.704899 TGTAGATTCATCTTGTATTGGTACGTG 59.295 37.037 0.00 0.00 38.32 4.49
6950 8303 6.640518 AGATTCATCTTGTATTGGTACGTGT 58.359 36.000 0.00 0.00 31.97 4.49
6951 8304 6.535150 AGATTCATCTTGTATTGGTACGTGTG 59.465 38.462 0.00 0.00 31.97 3.82
6952 8305 5.394224 TCATCTTGTATTGGTACGTGTGA 57.606 39.130 0.00 0.00 33.36 3.58
6953 8306 5.972935 TCATCTTGTATTGGTACGTGTGAT 58.027 37.500 0.00 0.00 33.36 3.06
6954 8307 5.810074 TCATCTTGTATTGGTACGTGTGATG 59.190 40.000 0.00 0.00 33.36 3.07
6955 8308 5.142061 TCTTGTATTGGTACGTGTGATGT 57.858 39.130 0.00 0.00 33.36 3.06
6956 8309 5.543714 TCTTGTATTGGTACGTGTGATGTT 58.456 37.500 0.00 0.00 33.36 2.71
6957 8310 6.689554 TCTTGTATTGGTACGTGTGATGTTA 58.310 36.000 0.00 0.00 33.36 2.41
6958 8311 7.324935 TCTTGTATTGGTACGTGTGATGTTAT 58.675 34.615 0.00 0.00 33.36 1.89
6959 8312 7.820386 TCTTGTATTGGTACGTGTGATGTTATT 59.180 33.333 0.00 0.00 33.36 1.40
6960 8313 7.528481 TGTATTGGTACGTGTGATGTTATTC 57.472 36.000 0.00 0.00 33.36 1.75
6961 8314 7.097834 TGTATTGGTACGTGTGATGTTATTCA 58.902 34.615 0.00 0.00 33.36 2.57
6962 8315 7.766738 TGTATTGGTACGTGTGATGTTATTCAT 59.233 33.333 0.00 0.00 35.05 2.57
6963 8316 9.251792 GTATTGGTACGTGTGATGTTATTCATA 57.748 33.333 0.00 0.00 36.83 2.15
6964 8317 8.902540 ATTGGTACGTGTGATGTTATTCATAT 57.097 30.769 0.00 0.00 36.83 1.78
6965 8318 8.725405 TTGGTACGTGTGATGTTATTCATATT 57.275 30.769 0.00 0.00 36.83 1.28
6966 8319 9.819267 TTGGTACGTGTGATGTTATTCATATTA 57.181 29.630 0.00 0.00 36.83 0.98
6967 8320 9.251792 TGGTACGTGTGATGTTATTCATATTAC 57.748 33.333 0.00 0.00 36.83 1.89
6968 8321 9.472361 GGTACGTGTGATGTTATTCATATTACT 57.528 33.333 0.00 0.00 36.83 2.24
6995 8348 6.607004 AACTAGCTGTTACCACATTACTCT 57.393 37.500 0.00 0.00 37.07 3.24
6996 8349 6.607004 ACTAGCTGTTACCACATTACTCTT 57.393 37.500 0.00 0.00 30.39 2.85
6997 8350 7.005709 ACTAGCTGTTACCACATTACTCTTT 57.994 36.000 0.00 0.00 30.39 2.52
6998 8351 7.450903 ACTAGCTGTTACCACATTACTCTTTT 58.549 34.615 0.00 0.00 30.39 2.27
6999 8352 7.937394 ACTAGCTGTTACCACATTACTCTTTTT 59.063 33.333 0.00 0.00 30.39 1.94
7034 8387 9.754382 ATTATTTGCCACATCATCTATTTTGTC 57.246 29.630 0.00 0.00 0.00 3.18
7035 8388 6.839124 TTTGCCACATCATCTATTTTGTCT 57.161 33.333 0.00 0.00 0.00 3.41
7036 8389 7.936496 TTTGCCACATCATCTATTTTGTCTA 57.064 32.000 0.00 0.00 0.00 2.59
7037 8390 7.936496 TTGCCACATCATCTATTTTGTCTAA 57.064 32.000 0.00 0.00 0.00 2.10
7038 8391 7.936496 TGCCACATCATCTATTTTGTCTAAA 57.064 32.000 0.00 0.00 0.00 1.85
7039 8392 8.523915 TGCCACATCATCTATTTTGTCTAAAT 57.476 30.769 0.00 0.00 39.69 1.40
7040 8393 9.625747 TGCCACATCATCTATTTTGTCTAAATA 57.374 29.630 0.55 0.55 37.60 1.40
7053 8406 8.741101 TTTTGTCTAAATATGTGTGATGTTGC 57.259 30.769 0.00 0.00 0.00 4.17
7054 8407 6.435430 TGTCTAAATATGTGTGATGTTGCC 57.565 37.500 0.00 0.00 0.00 4.52
7055 8408 5.942826 TGTCTAAATATGTGTGATGTTGCCA 59.057 36.000 0.00 0.00 0.00 4.92
7056 8409 6.128035 TGTCTAAATATGTGTGATGTTGCCAC 60.128 38.462 0.00 0.00 35.23 5.01
7057 8410 4.454728 AAATATGTGTGATGTTGCCACC 57.545 40.909 0.00 0.00 33.80 4.61
7058 8411 2.877097 TATGTGTGATGTTGCCACCT 57.123 45.000 0.00 0.00 33.80 4.00
7059 8412 2.877097 ATGTGTGATGTTGCCACCTA 57.123 45.000 0.00 0.00 33.80 3.08
7060 8413 2.877097 TGTGTGATGTTGCCACCTAT 57.123 45.000 0.00 0.00 33.80 2.57
7061 8414 2.435422 TGTGTGATGTTGCCACCTATG 58.565 47.619 0.00 0.00 33.80 2.23
7062 8415 2.224744 TGTGTGATGTTGCCACCTATGT 60.225 45.455 0.00 0.00 33.80 2.29
7063 8416 2.819608 GTGTGATGTTGCCACCTATGTT 59.180 45.455 0.00 0.00 33.80 2.71
7064 8417 4.006989 GTGTGATGTTGCCACCTATGTTA 58.993 43.478 0.00 0.00 33.80 2.41
7065 8418 4.006989 TGTGATGTTGCCACCTATGTTAC 58.993 43.478 0.00 0.00 33.80 2.50
7066 8419 4.261801 GTGATGTTGCCACCTATGTTACT 58.738 43.478 0.00 0.00 0.00 2.24
7067 8420 4.700213 GTGATGTTGCCACCTATGTTACTT 59.300 41.667 0.00 0.00 0.00 2.24
7068 8421 4.941263 TGATGTTGCCACCTATGTTACTTC 59.059 41.667 0.00 0.00 0.00 3.01
7069 8422 4.634012 TGTTGCCACCTATGTTACTTCT 57.366 40.909 0.00 0.00 0.00 2.85
7070 8423 5.748670 TGTTGCCACCTATGTTACTTCTA 57.251 39.130 0.00 0.00 0.00 2.10
7071 8424 6.308015 TGTTGCCACCTATGTTACTTCTAT 57.692 37.500 0.00 0.00 0.00 1.98
7072 8425 6.717289 TGTTGCCACCTATGTTACTTCTATT 58.283 36.000 0.00 0.00 0.00 1.73
7073 8426 7.853299 TGTTGCCACCTATGTTACTTCTATTA 58.147 34.615 0.00 0.00 0.00 0.98
7074 8427 8.491134 TGTTGCCACCTATGTTACTTCTATTAT 58.509 33.333 0.00 0.00 0.00 1.28
7075 8428 8.774586 GTTGCCACCTATGTTACTTCTATTATG 58.225 37.037 0.00 0.00 0.00 1.90
7076 8429 7.450074 TGCCACCTATGTTACTTCTATTATGG 58.550 38.462 0.00 0.00 0.00 2.74
7077 8430 7.291416 TGCCACCTATGTTACTTCTATTATGGA 59.709 37.037 0.00 0.00 0.00 3.41
7078 8431 8.322091 GCCACCTATGTTACTTCTATTATGGAT 58.678 37.037 0.00 0.00 0.00 3.41
7138 8493 2.289532 GCAGCTCCCTGTGAGACCT 61.290 63.158 0.00 0.00 44.42 3.85
7191 8546 1.746239 CGATGTGCCATGGTGCAGA 60.746 57.895 14.67 4.83 43.02 4.26
7197 8552 2.094675 GTGCCATGGTGCAGAATTACT 58.905 47.619 14.67 0.00 43.02 2.24
7210 8565 3.612860 CAGAATTACTGTGCCGACTGTAC 59.387 47.826 0.00 0.00 41.30 2.90
7211 8566 2.667473 ATTACTGTGCCGACTGTACC 57.333 50.000 0.00 0.00 36.54 3.34
7212 8567 1.330234 TTACTGTGCCGACTGTACCA 58.670 50.000 0.00 0.00 36.54 3.25
7213 8568 1.552578 TACTGTGCCGACTGTACCAT 58.447 50.000 0.00 0.00 35.92 3.55
7214 8569 0.037326 ACTGTGCCGACTGTACCATG 60.037 55.000 0.00 0.00 32.84 3.66
7215 8570 0.740868 CTGTGCCGACTGTACCATGG 60.741 60.000 11.19 11.19 0.00 3.66
7216 8571 1.295423 GTGCCGACTGTACCATGGT 59.705 57.895 23.55 23.55 0.00 3.55
7217 8572 0.533491 GTGCCGACTGTACCATGGTA 59.467 55.000 21.05 21.05 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.683859 CCGACGCTCCACTACACGA 61.684 63.158 0.00 0.00 0.00 4.35
128 129 4.697756 CCGGGGCGTCTGAAAGCA 62.698 66.667 0.00 0.00 34.54 3.91
231 232 3.567797 GGAAGCTGATGCCGACGC 61.568 66.667 0.00 0.00 40.80 5.19
269 270 2.355502 TCCGAAGACGAGGAGGCT 59.644 61.111 0.00 0.00 42.73 4.58
442 444 3.353370 CTACCGCTAGTAGGCCTATCT 57.647 52.381 17.38 16.56 44.19 1.98
506 511 1.228510 GATTTGCCCCCTCCTCAGG 59.771 63.158 0.00 0.00 39.98 3.86
508 516 0.549902 TCAGATTTGCCCCCTCCTCA 60.550 55.000 0.00 0.00 0.00 3.86
510 519 1.575447 GGTCAGATTTGCCCCCTCCT 61.575 60.000 0.00 0.00 0.00 3.69
513 523 1.789576 AACGGTCAGATTTGCCCCCT 61.790 55.000 0.00 0.00 0.00 4.79
527 537 2.288729 GGCGAAAAGTAAGACAAACGGT 59.711 45.455 0.00 0.00 0.00 4.83
555 566 3.785122 AAACCACGCCTGGACCACC 62.785 63.158 8.88 0.00 40.55 4.61
560 571 2.002018 AAGGGAAAACCACGCCTGGA 62.002 55.000 8.88 0.00 43.89 3.86
610 624 1.078347 GATCCCAGGCCAAACCCAA 59.922 57.895 5.01 0.00 40.58 4.12
645 659 0.031585 CGAAATCCATCGGCTCGGTA 59.968 55.000 0.00 0.00 39.12 4.02
646 660 1.227263 CGAAATCCATCGGCTCGGT 60.227 57.895 0.00 0.00 39.12 4.69
655 669 1.633432 TCCCAGAACACCGAAATCCAT 59.367 47.619 0.00 0.00 0.00 3.41
656 670 1.003118 CTCCCAGAACACCGAAATCCA 59.997 52.381 0.00 0.00 0.00 3.41
666 680 1.367471 CAGTCACGCTCCCAGAACA 59.633 57.895 0.00 0.00 0.00 3.18
670 684 0.535102 AAAACCAGTCACGCTCCCAG 60.535 55.000 0.00 0.00 0.00 4.45
717 736 2.757099 CCCCAACATGCCCTCAGC 60.757 66.667 0.00 0.00 44.14 4.26
721 742 4.740822 GCGTCCCCAACATGCCCT 62.741 66.667 0.00 0.00 0.00 5.19
726 747 4.778143 GAGCCGCGTCCCCAACAT 62.778 66.667 4.92 0.00 0.00 2.71
743 764 0.245539 TCGGGGTTTAGAGCAACTCG 59.754 55.000 0.00 0.00 35.36 4.18
757 778 2.086869 CAATGGCATATTAGCTCGGGG 58.913 52.381 0.00 0.00 34.17 5.73
758 779 1.470098 GCAATGGCATATTAGCTCGGG 59.530 52.381 0.00 0.00 40.72 5.14
761 782 2.154462 ACCGCAATGGCATATTAGCTC 58.846 47.619 0.00 0.00 43.94 4.09
822 843 0.320247 AAGAGAGAGGCAGTTGCGTG 60.320 55.000 3.80 0.00 43.26 5.34
823 844 0.394565 AAAGAGAGAGGCAGTTGCGT 59.605 50.000 0.00 0.00 43.26 5.24
824 845 1.074752 GAAAGAGAGAGGCAGTTGCG 58.925 55.000 0.00 0.00 43.26 4.85
825 846 1.447945 GGAAAGAGAGAGGCAGTTGC 58.552 55.000 0.00 0.00 41.14 4.17
1246 2555 5.242434 ACGGACAACATACAGAGCAAAATA 58.758 37.500 0.00 0.00 0.00 1.40
1256 2565 6.485313 AGAGATTTCAAAACGGACAACATACA 59.515 34.615 0.00 0.00 0.00 2.29
1263 2572 7.992008 ACTTTTTAGAGATTTCAAAACGGACA 58.008 30.769 0.00 0.00 0.00 4.02
1450 2760 7.173218 CCTTTGCTATACCAGTATAACACATGG 59.827 40.741 0.00 0.00 38.83 3.66
1480 2790 4.296621 ACTCCCCACGCTAACTTATTTT 57.703 40.909 0.00 0.00 0.00 1.82
1598 2909 2.666508 GCAGCTGCAAATTTCACATGAG 59.333 45.455 33.36 0.00 41.59 2.90
1850 3161 2.340210 TTGTTCCAGCAAGCTGTACA 57.660 45.000 19.60 18.52 42.15 2.90
2162 3473 7.540400 CGTCCACATTTATTGAAATTGTGCTTA 59.460 33.333 7.07 0.00 35.26 3.09
2176 3487 0.106719 CCTGCCCCGTCCACATTTAT 60.107 55.000 0.00 0.00 0.00 1.40
2202 3513 5.754890 AGGACTTTGTGAATGCAAAAATCAC 59.245 36.000 14.67 14.67 42.90 3.06
2390 3701 3.275999 ACATAGGCGTTTGTATTCCACC 58.724 45.455 0.40 0.00 0.00 4.61
2772 4084 5.294306 ACAAATCAGATAGTATTGCACCACG 59.706 40.000 0.00 0.00 0.00 4.94
3341 4654 4.142773 ACTTGAAAACGCGAGTCTTTCAAA 60.143 37.500 26.43 17.75 46.80 2.69
3354 4667 4.378616 CACGAGGCATAAAACTTGAAAACG 59.621 41.667 0.00 0.00 0.00 3.60
3384 4697 7.762588 AGTTAGCAGAAGAACTAACAGTAGA 57.237 36.000 13.59 0.00 46.92 2.59
3609 4925 1.195674 GGCAGAGAAAACTCGTTCAGC 59.804 52.381 0.00 0.00 0.00 4.26
3635 4951 3.764885 ATACTTTCGAATGTTGCTGGC 57.235 42.857 20.20 0.00 0.00 4.85
3884 5214 8.674607 GGAGACGTGAACCAAATTAAGATAAAT 58.325 33.333 0.00 0.00 0.00 1.40
3956 5287 6.486657 CCGAATCTGGAGCCAATTAAGATAAA 59.513 38.462 0.00 0.00 0.00 1.40
4003 5334 7.391148 TGGGAAAATATTCTACTTCAAGCAC 57.609 36.000 0.00 0.00 35.79 4.40
4400 5732 1.967319 ACGCCACAAGAAATGAGTGT 58.033 45.000 0.00 0.00 0.00 3.55
4401 5733 4.481930 TTTACGCCACAAGAAATGAGTG 57.518 40.909 0.00 0.00 0.00 3.51
4402 5734 4.518970 ACATTTACGCCACAAGAAATGAGT 59.481 37.500 11.91 0.00 40.25 3.41
4403 5735 4.853196 CACATTTACGCCACAAGAAATGAG 59.147 41.667 11.91 2.17 40.25 2.90
4404 5736 4.277174 ACACATTTACGCCACAAGAAATGA 59.723 37.500 11.91 0.00 40.25 2.57
4405 5737 4.382457 CACACATTTACGCCACAAGAAATG 59.618 41.667 4.98 4.98 42.41 2.32
4406 5738 4.037446 ACACACATTTACGCCACAAGAAAT 59.963 37.500 0.00 0.00 0.00 2.17
4680 6013 8.046708 AGCACAACATTATGTCTACCTAATTCA 58.953 33.333 0.00 0.00 0.00 2.57
4773 6107 2.930682 GCTGAATCTTCGTAACACCTCC 59.069 50.000 0.00 0.00 0.00 4.30
4824 6158 1.337703 TGGCACAAGATGTTGAAGCAC 59.662 47.619 19.92 12.83 38.86 4.40
5049 6396 6.838198 AAAATCAATATCATGTGCATGTGC 57.162 33.333 11.38 0.00 39.72 4.57
5050 6397 8.192068 ACAAAAATCAATATCATGTGCATGTG 57.808 30.769 11.38 3.71 39.72 3.21
5051 6398 8.780846 AACAAAAATCAATATCATGTGCATGT 57.219 26.923 11.38 3.14 39.72 3.21
5417 6764 9.201989 TCTTTCATGTCCTCTGTATACAATAGT 57.798 33.333 7.06 0.00 0.00 2.12
5427 6774 3.245016 TGGCAATCTTTCATGTCCTCTGT 60.245 43.478 0.00 0.00 0.00 3.41
5482 6832 5.048504 CGTCCTATATTAGTTTACAGGCGGA 60.049 44.000 0.00 0.00 0.00 5.54
5483 6833 5.159209 CGTCCTATATTAGTTTACAGGCGG 58.841 45.833 0.00 0.00 0.00 6.13
5484 6834 5.766222 ACGTCCTATATTAGTTTACAGGCG 58.234 41.667 0.00 0.00 0.00 5.52
5485 6835 8.429493 AAAACGTCCTATATTAGTTTACAGGC 57.571 34.615 0.00 0.00 34.42 4.85
5529 6879 8.980832 ATTCCCTCTGTGAACTAATATAGGAT 57.019 34.615 0.00 0.00 0.00 3.24
5605 6955 2.297597 AGGTTCAAGGACTCGTCTTCAG 59.702 50.000 0.00 0.00 0.00 3.02
5612 6962 0.037232 GACCCAGGTTCAAGGACTCG 60.037 60.000 0.00 0.00 0.00 4.18
5626 6976 2.523168 TGAGCTGTCACCGACCCA 60.523 61.111 0.00 0.00 0.00 4.51
5669 7019 4.218312 AGTTGAATGCAAAAACTCTCCCT 58.782 39.130 6.29 0.00 35.42 4.20
5761 7111 6.158598 CCAAATTACTTGTCACAGAAATGGG 58.841 40.000 0.00 0.00 32.65 4.00
5836 7187 0.606604 TTTCGCTCCCTAGTGTGGTC 59.393 55.000 0.00 0.00 34.68 4.02
5839 7190 2.069273 CTTGTTTCGCTCCCTAGTGTG 58.931 52.381 0.00 0.00 34.68 3.82
5843 7194 2.289444 TGAACCTTGTTTCGCTCCCTAG 60.289 50.000 0.00 0.00 0.00 3.02
6116 7468 1.434555 TCTTGTTATGCGGGTTGACG 58.565 50.000 0.00 0.00 0.00 4.35
6219 7571 2.098607 CCGCATGCAATCATCAAAGACT 59.901 45.455 19.57 0.00 0.00 3.24
6480 7833 9.216117 GTCATGTTTTGTGGTACTCTATAAACT 57.784 33.333 0.00 0.00 0.00 2.66
6482 7835 8.089597 TCGTCATGTTTTGTGGTACTCTATAAA 58.910 33.333 0.00 0.00 0.00 1.40
6485 7838 6.032956 TCGTCATGTTTTGTGGTACTCTAT 57.967 37.500 0.00 0.00 0.00 1.98
6486 7839 5.010314 ACTCGTCATGTTTTGTGGTACTCTA 59.990 40.000 0.00 0.00 0.00 2.43
6490 7843 4.607557 CGAACTCGTCATGTTTTGTGGTAC 60.608 45.833 0.00 0.00 34.11 3.34
6492 7845 2.286833 CGAACTCGTCATGTTTTGTGGT 59.713 45.455 0.00 0.00 34.11 4.16
6493 7846 2.903678 CGAACTCGTCATGTTTTGTGG 58.096 47.619 0.00 0.00 34.11 4.17
6494 7847 2.286125 TGCGAACTCGTCATGTTTTGTG 60.286 45.455 0.51 0.00 42.22 3.33
6495 7848 1.937223 TGCGAACTCGTCATGTTTTGT 59.063 42.857 0.51 0.00 42.22 2.83
6496 7849 2.298300 GTGCGAACTCGTCATGTTTTG 58.702 47.619 0.51 0.00 42.22 2.44
6499 7852 1.282248 CGGTGCGAACTCGTCATGTT 61.282 55.000 0.00 0.00 42.22 2.71
6500 7853 1.733041 CGGTGCGAACTCGTCATGT 60.733 57.895 0.00 0.00 42.22 3.21
6502 7855 2.809601 GCGGTGCGAACTCGTCAT 60.810 61.111 6.33 0.00 42.22 3.06
6503 7856 3.973516 AGCGGTGCGAACTCGTCA 61.974 61.111 6.33 0.00 42.22 4.35
6504 7857 3.470567 CAGCGGTGCGAACTCGTC 61.471 66.667 0.00 0.28 42.22 4.20
6518 7871 4.498682 CCTCAATTAAATACAGCTGCCAGC 60.499 45.833 15.27 9.13 42.84 4.85
6519 7872 4.498682 GCCTCAATTAAATACAGCTGCCAG 60.499 45.833 15.27 0.00 0.00 4.85
6581 7934 0.032540 GGGAGGTTTTTGCACTGCAG 59.967 55.000 13.48 13.48 40.61 4.41
6600 7953 0.882042 ACACTGACGCTGAAGCCTTG 60.882 55.000 0.00 0.00 37.91 3.61
6612 7965 6.035758 AGTGTTTTCTTTTCTCGTACACTGAC 59.964 38.462 0.00 0.00 42.05 3.51
6619 7972 7.330208 GCCACTATAGTGTTTTCTTTTCTCGTA 59.670 37.037 27.07 0.00 44.21 3.43
6660 8013 5.540337 TCCAGTATACCAAGATCATCTGGAC 59.460 44.000 13.70 3.97 43.12 4.02
6666 8019 4.281182 GGACGTCCAGTATACCAAGATCAT 59.719 45.833 29.75 0.00 35.64 2.45
6669 8022 3.638860 TGGACGTCCAGTATACCAAGAT 58.361 45.455 33.23 0.00 42.01 2.40
6768 8121 9.935682 CCACCGTATATAATCATTAATTGCATC 57.064 33.333 0.00 0.00 0.00 3.91
6769 8122 8.405531 GCCACCGTATATAATCATTAATTGCAT 58.594 33.333 0.00 0.00 0.00 3.96
6770 8123 7.609918 AGCCACCGTATATAATCATTAATTGCA 59.390 33.333 0.00 0.00 0.00 4.08
6797 8150 2.826488 ACTCCTCATTGTGGCTAGTCT 58.174 47.619 0.00 0.00 0.00 3.24
6798 8151 4.160626 AGTTACTCCTCATTGTGGCTAGTC 59.839 45.833 0.00 0.00 0.00 2.59
6799 8152 4.097418 AGTTACTCCTCATTGTGGCTAGT 58.903 43.478 0.00 2.77 0.00 2.57
6800 8153 4.744795 AGTTACTCCTCATTGTGGCTAG 57.255 45.455 0.00 0.00 0.00 3.42
6801 8154 6.808321 ATAAGTTACTCCTCATTGTGGCTA 57.192 37.500 0.00 0.00 0.00 3.93
6802 8155 5.700402 ATAAGTTACTCCTCATTGTGGCT 57.300 39.130 0.00 0.00 0.00 4.75
6803 8156 8.585881 TCTATATAAGTTACTCCTCATTGTGGC 58.414 37.037 0.00 0.00 0.00 5.01
6852 8205 9.756571 CCCATTGTAGAGGTAGTAATATAGAGT 57.243 37.037 0.00 0.00 0.00 3.24
6853 8206 9.191479 CCCCATTGTAGAGGTAGTAATATAGAG 57.809 40.741 0.00 0.00 0.00 2.43
6854 8207 8.908095 TCCCCATTGTAGAGGTAGTAATATAGA 58.092 37.037 0.00 0.00 0.00 1.98
6855 8208 9.191479 CTCCCCATTGTAGAGGTAGTAATATAG 57.809 40.741 0.00 0.00 0.00 1.31
6856 8209 8.685311 ACTCCCCATTGTAGAGGTAGTAATATA 58.315 37.037 5.48 0.00 31.70 0.86
6857 8210 7.545546 ACTCCCCATTGTAGAGGTAGTAATAT 58.454 38.462 5.48 0.00 31.70 1.28
6858 8211 6.930475 ACTCCCCATTGTAGAGGTAGTAATA 58.070 40.000 5.48 0.00 31.70 0.98
6859 8212 5.789535 ACTCCCCATTGTAGAGGTAGTAAT 58.210 41.667 5.48 0.00 31.70 1.89
6860 8213 5.216665 ACTCCCCATTGTAGAGGTAGTAA 57.783 43.478 5.48 0.00 31.70 2.24
6861 8214 4.894252 ACTCCCCATTGTAGAGGTAGTA 57.106 45.455 5.48 0.00 31.70 1.82
6862 8215 3.778622 ACTCCCCATTGTAGAGGTAGT 57.221 47.619 5.48 0.00 31.70 2.73
6863 8216 4.960469 TGTTACTCCCCATTGTAGAGGTAG 59.040 45.833 5.48 0.00 31.70 3.18
6864 8217 4.950361 TGTTACTCCCCATTGTAGAGGTA 58.050 43.478 5.48 0.00 31.70 3.08
6865 8218 3.798515 TGTTACTCCCCATTGTAGAGGT 58.201 45.455 5.48 0.00 31.70 3.85
6866 8219 6.043243 ACATATGTTACTCCCCATTGTAGAGG 59.957 42.308 1.41 0.00 31.70 3.69
6867 8220 6.931281 CACATATGTTACTCCCCATTGTAGAG 59.069 42.308 5.37 0.00 0.00 2.43
6868 8221 6.385759 ACACATATGTTACTCCCCATTGTAGA 59.614 38.462 5.37 0.00 34.46 2.59
6869 8222 6.483307 CACACATATGTTACTCCCCATTGTAG 59.517 42.308 5.37 0.00 36.72 2.74
6870 8223 6.353323 CACACATATGTTACTCCCCATTGTA 58.647 40.000 5.37 0.00 36.72 2.41
6871 8224 5.192927 CACACATATGTTACTCCCCATTGT 58.807 41.667 5.37 0.00 36.72 2.71
6872 8225 4.580167 CCACACATATGTTACTCCCCATTG 59.420 45.833 5.37 0.00 36.72 2.82
6873 8226 4.229582 ACCACACATATGTTACTCCCCATT 59.770 41.667 5.37 0.00 36.72 3.16
6874 8227 3.785887 ACCACACATATGTTACTCCCCAT 59.214 43.478 5.37 0.00 36.72 4.00
6875 8228 3.054728 CACCACACATATGTTACTCCCCA 60.055 47.826 5.37 0.00 36.72 4.96
6876 8229 3.054655 ACACCACACATATGTTACTCCCC 60.055 47.826 5.37 0.00 36.72 4.81
6877 8230 4.189231 GACACCACACATATGTTACTCCC 58.811 47.826 5.37 0.00 36.72 4.30
6878 8231 4.827692 TGACACCACACATATGTTACTCC 58.172 43.478 5.37 0.00 36.72 3.85
6879 8232 5.220662 GCATGACACCACACATATGTTACTC 60.221 44.000 5.37 0.00 36.72 2.59
6880 8233 4.635765 GCATGACACCACACATATGTTACT 59.364 41.667 5.37 0.00 36.72 2.24
6881 8234 4.394610 TGCATGACACCACACATATGTTAC 59.605 41.667 5.37 0.00 36.72 2.50
6882 8235 4.583871 TGCATGACACCACACATATGTTA 58.416 39.130 5.37 0.00 36.72 2.41
6883 8236 3.419943 TGCATGACACCACACATATGTT 58.580 40.909 5.37 0.00 36.72 2.71
6884 8237 3.070476 TGCATGACACCACACATATGT 57.930 42.857 1.41 1.41 40.80 2.29
6885 8238 3.190953 TGTTGCATGACACCACACATATG 59.809 43.478 0.00 0.00 0.00 1.78
6886 8239 3.419943 TGTTGCATGACACCACACATAT 58.580 40.909 0.00 0.00 0.00 1.78
6887 8240 2.856222 TGTTGCATGACACCACACATA 58.144 42.857 0.00 0.00 0.00 2.29
6888 8241 1.689984 TGTTGCATGACACCACACAT 58.310 45.000 0.00 0.00 0.00 3.21
6889 8242 1.689984 ATGTTGCATGACACCACACA 58.310 45.000 0.00 0.00 31.30 3.72
6890 8243 2.798976 AATGTTGCATGACACCACAC 57.201 45.000 0.00 0.00 31.30 3.82
6891 8244 3.815856 AAAATGTTGCATGACACCACA 57.184 38.095 0.00 0.00 31.30 4.17
6892 8245 6.783892 AAATAAAATGTTGCATGACACCAC 57.216 33.333 0.00 0.00 31.30 4.16
6920 8273 9.601217 GTACCAATACAAGATGAATCTACAACT 57.399 33.333 0.00 0.00 35.76 3.16
6921 8274 8.540492 CGTACCAATACAAGATGAATCTACAAC 58.460 37.037 0.00 0.00 35.76 3.32
6922 8275 8.255206 ACGTACCAATACAAGATGAATCTACAA 58.745 33.333 0.00 0.00 35.76 2.41
6923 8276 7.704899 CACGTACCAATACAAGATGAATCTACA 59.295 37.037 0.00 0.00 35.76 2.74
6924 8277 7.705325 ACACGTACCAATACAAGATGAATCTAC 59.295 37.037 0.00 0.00 35.76 2.59
6925 8278 7.704899 CACACGTACCAATACAAGATGAATCTA 59.295 37.037 0.00 0.00 35.76 1.98
6926 8279 6.535150 CACACGTACCAATACAAGATGAATCT 59.465 38.462 0.00 0.00 39.22 2.40
6927 8280 6.533723 TCACACGTACCAATACAAGATGAATC 59.466 38.462 0.00 0.00 0.00 2.52
6928 8281 6.403049 TCACACGTACCAATACAAGATGAAT 58.597 36.000 0.00 0.00 0.00 2.57
6929 8282 5.785243 TCACACGTACCAATACAAGATGAA 58.215 37.500 0.00 0.00 0.00 2.57
6930 8283 5.394224 TCACACGTACCAATACAAGATGA 57.606 39.130 0.00 0.00 0.00 2.92
6931 8284 5.580691 ACATCACACGTACCAATACAAGATG 59.419 40.000 0.00 0.00 34.37 2.90
6932 8285 5.730550 ACATCACACGTACCAATACAAGAT 58.269 37.500 0.00 0.00 0.00 2.40
6933 8286 5.142061 ACATCACACGTACCAATACAAGA 57.858 39.130 0.00 0.00 0.00 3.02
6934 8287 5.856126 AACATCACACGTACCAATACAAG 57.144 39.130 0.00 0.00 0.00 3.16
6935 8288 7.603024 TGAATAACATCACACGTACCAATACAA 59.397 33.333 0.00 0.00 0.00 2.41
6936 8289 7.097834 TGAATAACATCACACGTACCAATACA 58.902 34.615 0.00 0.00 0.00 2.29
6937 8290 7.528481 TGAATAACATCACACGTACCAATAC 57.472 36.000 0.00 0.00 0.00 1.89
6938 8291 9.990360 ATATGAATAACATCACACGTACCAATA 57.010 29.630 0.00 0.00 40.07 1.90
6939 8292 8.902540 ATATGAATAACATCACACGTACCAAT 57.097 30.769 0.00 0.00 40.07 3.16
6940 8293 8.725405 AATATGAATAACATCACACGTACCAA 57.275 30.769 0.00 0.00 40.07 3.67
6941 8294 9.251792 GTAATATGAATAACATCACACGTACCA 57.748 33.333 0.00 0.00 40.07 3.25
6942 8295 9.472361 AGTAATATGAATAACATCACACGTACC 57.528 33.333 0.00 0.00 40.07 3.34
7008 8361 9.754382 GACAAAATAGATGATGTGGCAAATAAT 57.246 29.630 0.00 0.00 0.00 1.28
7009 8362 8.970020 AGACAAAATAGATGATGTGGCAAATAA 58.030 29.630 0.00 0.00 0.00 1.40
7010 8363 8.523915 AGACAAAATAGATGATGTGGCAAATA 57.476 30.769 0.00 0.00 0.00 1.40
7011 8364 7.414222 AGACAAAATAGATGATGTGGCAAAT 57.586 32.000 0.00 0.00 0.00 2.32
7012 8365 6.839124 AGACAAAATAGATGATGTGGCAAA 57.161 33.333 0.00 0.00 0.00 3.68
7013 8366 7.936496 TTAGACAAAATAGATGATGTGGCAA 57.064 32.000 0.00 0.00 0.00 4.52
7014 8367 7.936496 TTTAGACAAAATAGATGATGTGGCA 57.064 32.000 0.00 0.00 0.00 4.92
7027 8380 9.357652 GCAACATCACACATATTTAGACAAAAT 57.642 29.630 0.00 0.00 40.87 1.82
7028 8381 7.812191 GGCAACATCACACATATTTAGACAAAA 59.188 33.333 0.00 0.00 0.00 2.44
7029 8382 7.040132 TGGCAACATCACACATATTTAGACAAA 60.040 33.333 0.00 0.00 46.17 2.83
7030 8383 6.432472 TGGCAACATCACACATATTTAGACAA 59.568 34.615 0.00 0.00 46.17 3.18
7031 8384 5.942826 TGGCAACATCACACATATTTAGACA 59.057 36.000 0.00 0.00 46.17 3.41
7032 8385 6.435430 TGGCAACATCACACATATTTAGAC 57.565 37.500 0.00 0.00 46.17 2.59
7049 8402 8.774586 CATAATAGAAGTAACATAGGTGGCAAC 58.225 37.037 0.00 0.00 0.00 4.17
7050 8403 7.936847 CCATAATAGAAGTAACATAGGTGGCAA 59.063 37.037 0.00 0.00 0.00 4.52
7051 8404 7.291416 TCCATAATAGAAGTAACATAGGTGGCA 59.709 37.037 0.00 0.00 0.00 4.92
7052 8405 7.676947 TCCATAATAGAAGTAACATAGGTGGC 58.323 38.462 0.00 0.00 0.00 5.01
7071 8424 9.447279 TCCCTGATTTTCTAAGACTATCCATAA 57.553 33.333 0.00 0.00 0.00 1.90
7072 8425 9.447279 TTCCCTGATTTTCTAAGACTATCCATA 57.553 33.333 0.00 0.00 0.00 2.74
7073 8426 7.937700 TCCCTGATTTTCTAAGACTATCCAT 57.062 36.000 0.00 0.00 0.00 3.41
7074 8427 7.749377 TTCCCTGATTTTCTAAGACTATCCA 57.251 36.000 0.00 0.00 0.00 3.41
7075 8428 7.227711 GCTTTCCCTGATTTTCTAAGACTATCC 59.772 40.741 0.00 0.00 0.00 2.59
7076 8429 7.042389 CGCTTTCCCTGATTTTCTAAGACTATC 60.042 40.741 0.00 0.00 0.00 2.08
7077 8430 6.763610 CGCTTTCCCTGATTTTCTAAGACTAT 59.236 38.462 0.00 0.00 0.00 2.12
7078 8431 6.106673 CGCTTTCCCTGATTTTCTAAGACTA 58.893 40.000 0.00 0.00 0.00 2.59
7079 8432 4.938226 CGCTTTCCCTGATTTTCTAAGACT 59.062 41.667 0.00 0.00 0.00 3.24
7080 8433 4.095036 CCGCTTTCCCTGATTTTCTAAGAC 59.905 45.833 0.00 0.00 0.00 3.01
7081 8434 4.261801 CCGCTTTCCCTGATTTTCTAAGA 58.738 43.478 0.00 0.00 0.00 2.10
7082 8435 3.181496 GCCGCTTTCCCTGATTTTCTAAG 60.181 47.826 0.00 0.00 0.00 2.18
7083 8436 2.752903 GCCGCTTTCCCTGATTTTCTAA 59.247 45.455 0.00 0.00 0.00 2.10
7149 8504 1.076533 ATAGCCAAACTGTCGTCGCG 61.077 55.000 0.00 0.00 0.00 5.87
7156 8511 0.037697 TCGCGACATAGCCAAACTGT 60.038 50.000 3.71 0.00 0.00 3.55
7191 8546 2.300723 TGGTACAGTCGGCACAGTAATT 59.699 45.455 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.