Multiple sequence alignment - TraesCS4D01G161600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G161600 chr4D 100.000 2648 0 0 1 2648 241367404 241364757 0.000000e+00 4891
1 TraesCS4D01G161600 chr4D 95.238 2331 98 8 1 2321 241073943 241076270 0.000000e+00 3677
2 TraesCS4D01G161600 chr4D 94.637 2331 108 11 1 2321 241283580 241281257 0.000000e+00 3596
3 TraesCS4D01G161600 chr4D 96.024 327 13 0 2322 2648 276821680 276821354 1.400000e-147 532
4 TraesCS4D01G161600 chr4D 95.719 327 14 0 2322 2648 239192458 239192784 6.490000e-146 527
5 TraesCS4D01G161600 chr4D 95.427 328 15 0 2321 2648 239186001 239186328 8.400000e-145 523
6 TraesCS4D01G161600 chr4D 95.427 328 15 0 2321 2648 276828075 276827748 8.400000e-145 523
7 TraesCS4D01G161600 chr4D 95.413 327 15 0 2322 2648 289224600 289224274 3.020000e-144 521
8 TraesCS4D01G161600 chr4D 95.413 327 14 1 2322 2648 241083296 241083621 1.090000e-143 520
9 TraesCS4D01G161600 chr4D 94.154 325 19 0 2324 2648 288434327 288434003 1.830000e-136 496
10 TraesCS4D01G161600 chr4D 93.884 327 20 0 2322 2648 241358665 241358339 6.580000e-136 494
11 TraesCS4D01G161600 chr4D 93.578 327 21 0 2322 2648 241089737 241090063 3.060000e-134 488
12 TraesCS4D01G161600 chrUn 96.827 2332 60 8 1 2321 171044486 171046814 0.000000e+00 3884
13 TraesCS4D01G161600 chrUn 96.682 1899 48 8 1 1887 45094199 45096094 0.000000e+00 3144
14 TraesCS4D01G161600 chrUn 96.594 1615 42 6 1 1603 336782381 336783994 0.000000e+00 2665
15 TraesCS4D01G161600 chr6D 96.220 2328 73 9 1 2318 283206946 283209268 0.000000e+00 3797
16 TraesCS4D01G161600 chr6D 95.969 2332 80 8 1 2321 425972822 425975150 0.000000e+00 3773
17 TraesCS4D01G161600 chr6D 92.749 1586 97 12 748 2321 182936471 182938050 0.000000e+00 2276
18 TraesCS4D01G161600 chr6B 96.096 2331 78 8 1 2321 388156072 388153745 0.000000e+00 3788
19 TraesCS4D01G161600 chr6B 95.410 2331 91 11 1 2321 388346394 388344070 0.000000e+00 3698
20 TraesCS4D01G161600 chr3D 95.574 2327 91 7 1 2318 193371587 193373910 0.000000e+00 3716
21 TraesCS4D01G161600 chr3A 96.788 1899 46 8 1 1887 66036872 66034977 0.000000e+00 3155
22 TraesCS4D01G161600 chr3A 96.374 1103 30 5 1 1094 593302764 593303865 0.000000e+00 1807
23 TraesCS4D01G161600 chr2A 96.786 1898 46 9 1 1887 735230023 735228130 0.000000e+00 3153
24 TraesCS4D01G161600 chr7A 96.681 1898 49 8 1 1887 60300688 60302582 0.000000e+00 3144
25 TraesCS4D01G161600 chr5B 96.682 1899 48 8 1 1887 130575321 130573426 0.000000e+00 3144


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G161600 chr4D 241364757 241367404 2647 True 4891 4891 100.000 1 2648 1 chr4D.!!$R3 2647
1 TraesCS4D01G161600 chr4D 241073943 241076270 2327 False 3677 3677 95.238 1 2321 1 chr4D.!!$F3 2320
2 TraesCS4D01G161600 chr4D 241281257 241283580 2323 True 3596 3596 94.637 1 2321 1 chr4D.!!$R1 2320
3 TraesCS4D01G161600 chrUn 171044486 171046814 2328 False 3884 3884 96.827 1 2321 1 chrUn.!!$F2 2320
4 TraesCS4D01G161600 chrUn 45094199 45096094 1895 False 3144 3144 96.682 1 1887 1 chrUn.!!$F1 1886
5 TraesCS4D01G161600 chrUn 336782381 336783994 1613 False 2665 2665 96.594 1 1603 1 chrUn.!!$F3 1602
6 TraesCS4D01G161600 chr6D 283206946 283209268 2322 False 3797 3797 96.220 1 2318 1 chr6D.!!$F2 2317
7 TraesCS4D01G161600 chr6D 425972822 425975150 2328 False 3773 3773 95.969 1 2321 1 chr6D.!!$F3 2320
8 TraesCS4D01G161600 chr6D 182936471 182938050 1579 False 2276 2276 92.749 748 2321 1 chr6D.!!$F1 1573
9 TraesCS4D01G161600 chr6B 388153745 388156072 2327 True 3788 3788 96.096 1 2321 1 chr6B.!!$R1 2320
10 TraesCS4D01G161600 chr6B 388344070 388346394 2324 True 3698 3698 95.410 1 2321 1 chr6B.!!$R2 2320
11 TraesCS4D01G161600 chr3D 193371587 193373910 2323 False 3716 3716 95.574 1 2318 1 chr3D.!!$F1 2317
12 TraesCS4D01G161600 chr3A 66034977 66036872 1895 True 3155 3155 96.788 1 1887 1 chr3A.!!$R1 1886
13 TraesCS4D01G161600 chr3A 593302764 593303865 1101 False 1807 1807 96.374 1 1094 1 chr3A.!!$F1 1093
14 TraesCS4D01G161600 chr2A 735228130 735230023 1893 True 3153 3153 96.786 1 1887 1 chr2A.!!$R1 1886
15 TraesCS4D01G161600 chr7A 60300688 60302582 1894 False 3144 3144 96.681 1 1887 1 chr7A.!!$F1 1886
16 TraesCS4D01G161600 chr5B 130573426 130575321 1895 True 3144 3144 96.682 1 1887 1 chr5B.!!$R1 1886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 852 1.270893 ACGGGCAAAAAGAGAGAGACC 60.271 52.381 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 2366 0.036875 ACAGCTTGCAACCTCCTACC 59.963 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 4.290093 AGAAGATCTACAGGCATGTACCA 58.710 43.478 7.21 0.00 41.01 3.25
125 126 5.615289 AGATCTACAGGCATGTACCAATTC 58.385 41.667 7.21 0.93 41.01 2.17
126 127 5.367937 AGATCTACAGGCATGTACCAATTCT 59.632 40.000 7.21 3.13 41.01 2.40
127 128 5.023533 TCTACAGGCATGTACCAATTCTC 57.976 43.478 7.21 0.00 41.01 2.87
129 130 2.578021 ACAGGCATGTACCAATTCTCCT 59.422 45.455 0.06 0.00 38.09 3.69
169 171 3.193691 CCCGAGTGAGTATGGACCATATC 59.806 52.174 17.24 14.71 0.00 1.63
188 190 9.163894 ACCATATCCTCATCTTTCTTCTCAATA 57.836 33.333 0.00 0.00 0.00 1.90
203 205 3.949754 TCTCAATATACACCTCGTTCCGT 59.050 43.478 0.00 0.00 0.00 4.69
236 238 7.553044 CCTATCCTCGTTTCAAAATAAAGGACT 59.447 37.037 0.00 0.00 31.83 3.85
277 279 1.471119 TAAGCGAGTCAGTGTAGGGG 58.529 55.000 0.00 0.00 0.00 4.79
366 368 8.885722 CCAAATATCAACAAAAAGATGAATGGG 58.114 33.333 0.00 0.00 32.40 4.00
398 400 7.047271 TGTCGATATGAATTGATCTTCAACCA 58.953 34.615 1.90 0.00 39.45 3.67
554 556 4.634184 TTGACTTATCTAGCCGTGTCTC 57.366 45.455 0.00 0.00 0.00 3.36
625 627 5.488919 TGGTCCTTTGGATGTAAGAGATCTT 59.511 40.000 0.00 0.07 35.52 2.40
802 804 4.654262 AGATATTGGAAAGCGAACTCCCTA 59.346 41.667 0.00 0.00 0.00 3.53
842 852 1.270893 ACGGGCAAAAAGAGAGAGACC 60.271 52.381 0.00 0.00 0.00 3.85
864 874 3.067742 CGACTAACTACCCGGATCAATGT 59.932 47.826 0.73 0.00 0.00 2.71
890 900 6.992123 TGATTGATGACTGAATAAATAGCCGT 59.008 34.615 0.00 0.00 0.00 5.68
1031 1041 5.419760 AAAGAACGCAGAAGTAAGGAAAC 57.580 39.130 0.00 0.00 0.00 2.78
1062 1072 9.663904 CGACTCTTTCTTGAACAATTTCATAAA 57.336 29.630 0.00 0.00 41.50 1.40
1147 1164 7.062956 CGCCCTTAATGATAGGTTTTGAAAAAC 59.937 37.037 9.66 9.66 45.70 2.43
1383 1400 4.665833 TCCGTACCAATTCGATCAATCT 57.334 40.909 0.00 0.00 0.00 2.40
1418 1435 6.602278 GGTTAAACATTCTATTAGGGAGCCT 58.398 40.000 0.00 0.00 37.71 4.58
1432 1449 2.180276 GGAGCCTGGTCTTGACTCTTA 58.820 52.381 0.00 0.00 0.00 2.10
1609 1626 7.136885 TGGGTATTCCTCTCCTTTTGTATCTA 58.863 38.462 0.00 0.00 36.20 1.98
1724 1741 1.208776 GCCCGGGTATGTAAGTTCAGT 59.791 52.381 24.63 0.00 0.00 3.41
1805 1823 9.690446 TTAGGGAAGAATAAGGAAGAGGAATAT 57.310 33.333 0.00 0.00 0.00 1.28
1862 1880 5.487433 CGGATCCAATACACATAAGGCATA 58.513 41.667 13.41 0.00 0.00 3.14
1866 1884 5.865085 TCCAATACACATAAGGCATAGGTC 58.135 41.667 0.00 0.00 0.00 3.85
1914 1932 0.830444 AGTCTTCGGGTAGCACCACA 60.830 55.000 7.49 0.00 41.02 4.17
1971 1989 0.391130 GTACATGTTCCTGCGGCTCA 60.391 55.000 2.30 0.00 0.00 4.26
2034 2052 5.538849 TCCTTGTTCCCATTAACAAAACC 57.461 39.130 4.00 0.00 45.88 3.27
2098 2116 7.159322 TGGTGCTTTTTCTACTTTGTTTACA 57.841 32.000 0.00 0.00 0.00 2.41
2187 2205 9.567776 TTTAACTTCTGTATTCATCTTGTTCCA 57.432 29.630 0.00 0.00 0.00 3.53
2246 2264 1.136305 TCGAACCGGCTCCTATTTCAG 59.864 52.381 0.00 0.00 0.00 3.02
2265 2283 4.873129 CCGTGCTGGACCGATCGG 62.873 72.222 32.20 32.20 42.00 4.18
2310 2328 2.236146 TCAACTGGTGGAATACATCGCT 59.764 45.455 0.00 0.00 30.79 4.93
2321 2339 0.981183 TACATCGCTTCAACCTGGGT 59.019 50.000 0.00 0.00 0.00 4.51
2322 2340 0.606401 ACATCGCTTCAACCTGGGTG 60.606 55.000 5.05 5.05 0.00 4.61
2323 2341 0.606401 CATCGCTTCAACCTGGGTGT 60.606 55.000 12.26 0.00 0.00 4.16
2324 2342 0.321653 ATCGCTTCAACCTGGGTGTC 60.322 55.000 12.26 1.69 0.00 3.67
2325 2343 2.317609 CGCTTCAACCTGGGTGTCG 61.318 63.158 12.26 10.13 0.00 4.35
2326 2344 1.966451 GCTTCAACCTGGGTGTCGG 60.966 63.158 12.26 4.47 0.00 4.79
2327 2345 1.450211 CTTCAACCTGGGTGTCGGT 59.550 57.895 12.26 0.00 34.27 4.69
2328 2346 0.884704 CTTCAACCTGGGTGTCGGTG 60.885 60.000 12.26 0.00 32.86 4.94
2329 2347 1.628238 TTCAACCTGGGTGTCGGTGT 61.628 55.000 12.26 0.00 32.86 4.16
2330 2348 1.597027 CAACCTGGGTGTCGGTGTC 60.597 63.158 2.79 0.00 32.86 3.67
2331 2349 2.067605 AACCTGGGTGTCGGTGTCA 61.068 57.895 0.00 0.00 32.86 3.58
2332 2350 1.628238 AACCTGGGTGTCGGTGTCAA 61.628 55.000 0.00 0.00 32.86 3.18
2333 2351 1.147376 CCTGGGTGTCGGTGTCAAA 59.853 57.895 0.00 0.00 0.00 2.69
2334 2352 0.464735 CCTGGGTGTCGGTGTCAAAA 60.465 55.000 0.00 0.00 0.00 2.44
2335 2353 0.661020 CTGGGTGTCGGTGTCAAAAC 59.339 55.000 0.00 0.00 0.00 2.43
2336 2354 0.748729 TGGGTGTCGGTGTCAAAACC 60.749 55.000 0.00 0.00 36.82 3.27
2342 2360 4.150994 GGTGTCAAAACCGGCAGA 57.849 55.556 0.00 0.00 0.00 4.26
2343 2361 2.641197 GGTGTCAAAACCGGCAGAT 58.359 52.632 0.00 0.00 0.00 2.90
2344 2362 0.521735 GGTGTCAAAACCGGCAGATC 59.478 55.000 0.00 0.00 0.00 2.75
2345 2363 1.523758 GTGTCAAAACCGGCAGATCT 58.476 50.000 0.00 0.00 0.00 2.75
2346 2364 1.464997 GTGTCAAAACCGGCAGATCTC 59.535 52.381 0.00 0.00 0.00 2.75
2347 2365 0.721718 GTCAAAACCGGCAGATCTCG 59.278 55.000 0.00 0.00 0.00 4.04
2351 2369 0.974010 AAACCGGCAGATCTCGGGTA 60.974 55.000 22.66 0.00 46.82 3.69
2352 2370 1.392710 AACCGGCAGATCTCGGGTAG 61.393 60.000 22.66 0.00 45.54 3.18
2353 2371 2.565645 CCGGCAGATCTCGGGTAGG 61.566 68.421 13.71 0.00 42.32 3.18
2354 2372 1.528542 CGGCAGATCTCGGGTAGGA 60.529 63.158 0.00 0.00 0.00 2.94
2355 2373 1.519751 CGGCAGATCTCGGGTAGGAG 61.520 65.000 0.00 0.00 35.32 3.69
2356 2374 1.182385 GGCAGATCTCGGGTAGGAGG 61.182 65.000 0.00 0.00 34.74 4.30
2357 2375 0.468400 GCAGATCTCGGGTAGGAGGT 60.468 60.000 0.00 0.00 34.74 3.85
2358 2376 2.030045 GCAGATCTCGGGTAGGAGGTT 61.030 57.143 0.00 0.00 34.74 3.50
2359 2377 1.683917 CAGATCTCGGGTAGGAGGTTG 59.316 57.143 0.00 0.00 34.74 3.77
2360 2378 0.389757 GATCTCGGGTAGGAGGTTGC 59.610 60.000 0.00 0.00 34.74 4.17
2361 2379 0.325296 ATCTCGGGTAGGAGGTTGCA 60.325 55.000 0.00 0.00 34.74 4.08
2362 2380 0.543410 TCTCGGGTAGGAGGTTGCAA 60.543 55.000 0.00 0.00 34.74 4.08
2363 2381 0.108138 CTCGGGTAGGAGGTTGCAAG 60.108 60.000 0.00 0.00 0.00 4.01
2364 2382 1.745489 CGGGTAGGAGGTTGCAAGC 60.745 63.158 20.81 20.81 0.00 4.01
2365 2383 1.685820 GGGTAGGAGGTTGCAAGCT 59.314 57.895 30.06 30.06 39.89 3.74
2366 2384 0.678048 GGGTAGGAGGTTGCAAGCTG 60.678 60.000 34.11 0.00 36.78 4.24
2367 2385 0.036875 GGTAGGAGGTTGCAAGCTGT 59.963 55.000 34.11 22.47 36.78 4.40
2368 2386 1.160137 GTAGGAGGTTGCAAGCTGTG 58.840 55.000 34.11 0.00 36.78 3.66
2369 2387 1.055849 TAGGAGGTTGCAAGCTGTGA 58.944 50.000 34.11 16.08 36.78 3.58
2370 2388 0.183492 AGGAGGTTGCAAGCTGTGAA 59.817 50.000 34.11 0.00 36.78 3.18
2371 2389 1.202976 AGGAGGTTGCAAGCTGTGAAT 60.203 47.619 34.11 10.79 36.78 2.57
2372 2390 1.200948 GGAGGTTGCAAGCTGTGAATC 59.799 52.381 34.11 18.60 36.78 2.52
2373 2391 2.157738 GAGGTTGCAAGCTGTGAATCT 58.842 47.619 34.11 9.22 36.78 2.40
2374 2392 3.338249 GAGGTTGCAAGCTGTGAATCTA 58.662 45.455 34.11 0.00 36.78 1.98
2375 2393 3.341823 AGGTTGCAAGCTGTGAATCTAG 58.658 45.455 29.20 0.00 35.05 2.43
2376 2394 2.421424 GGTTGCAAGCTGTGAATCTAGG 59.579 50.000 21.06 0.00 0.00 3.02
2377 2395 3.338249 GTTGCAAGCTGTGAATCTAGGA 58.662 45.455 0.00 0.00 0.00 2.94
2378 2396 3.920231 TGCAAGCTGTGAATCTAGGAT 57.080 42.857 0.00 0.00 0.00 3.24
2379 2397 3.801698 TGCAAGCTGTGAATCTAGGATC 58.198 45.455 0.00 0.00 0.00 3.36
2380 2398 2.799412 GCAAGCTGTGAATCTAGGATCG 59.201 50.000 0.00 0.00 0.00 3.69
2381 2399 3.491619 GCAAGCTGTGAATCTAGGATCGA 60.492 47.826 0.00 0.00 0.00 3.59
2382 2400 4.798924 GCAAGCTGTGAATCTAGGATCGAT 60.799 45.833 0.00 0.00 0.00 3.59
2383 2401 4.517952 AGCTGTGAATCTAGGATCGATG 57.482 45.455 0.54 0.00 0.00 3.84
2384 2402 3.257873 AGCTGTGAATCTAGGATCGATGG 59.742 47.826 0.54 0.00 0.00 3.51
2385 2403 3.616076 GCTGTGAATCTAGGATCGATGGG 60.616 52.174 0.54 0.00 0.00 4.00
2386 2404 3.576118 CTGTGAATCTAGGATCGATGGGT 59.424 47.826 0.54 0.00 0.00 4.51
2387 2405 4.736473 TGTGAATCTAGGATCGATGGGTA 58.264 43.478 0.54 0.00 0.00 3.69
2388 2406 5.144832 TGTGAATCTAGGATCGATGGGTAA 58.855 41.667 0.54 0.00 0.00 2.85
2389 2407 5.010719 TGTGAATCTAGGATCGATGGGTAAC 59.989 44.000 0.54 0.00 0.00 2.50
2390 2408 5.010719 GTGAATCTAGGATCGATGGGTAACA 59.989 44.000 0.54 0.00 39.74 2.41
2391 2409 5.243954 TGAATCTAGGATCGATGGGTAACAG 59.756 44.000 0.54 0.00 39.74 3.16
2392 2410 3.497332 TCTAGGATCGATGGGTAACAGG 58.503 50.000 0.54 0.00 39.74 4.00
2393 2411 2.471815 AGGATCGATGGGTAACAGGA 57.528 50.000 0.54 0.00 39.74 3.86
2394 2412 2.320781 AGGATCGATGGGTAACAGGAG 58.679 52.381 0.54 0.00 39.74 3.69
2395 2413 2.091278 AGGATCGATGGGTAACAGGAGA 60.091 50.000 0.54 0.00 39.74 3.71
2396 2414 2.036089 GGATCGATGGGTAACAGGAGAC 59.964 54.545 0.54 0.00 39.74 3.36
2397 2415 2.225382 TCGATGGGTAACAGGAGACA 57.775 50.000 0.00 0.00 39.74 3.41
2398 2416 2.531771 TCGATGGGTAACAGGAGACAA 58.468 47.619 0.00 0.00 39.74 3.18
2399 2417 2.496070 TCGATGGGTAACAGGAGACAAG 59.504 50.000 0.00 0.00 39.74 3.16
2400 2418 2.418746 CGATGGGTAACAGGAGACAAGG 60.419 54.545 0.00 0.00 39.74 3.61
2401 2419 1.358152 TGGGTAACAGGAGACAAGGG 58.642 55.000 0.00 0.00 39.74 3.95
2402 2420 1.132657 TGGGTAACAGGAGACAAGGGA 60.133 52.381 0.00 0.00 39.74 4.20
2403 2421 1.278413 GGGTAACAGGAGACAAGGGAC 59.722 57.143 0.00 0.00 39.74 4.46
2404 2422 1.975680 GGTAACAGGAGACAAGGGACA 59.024 52.381 0.00 0.00 0.00 4.02
2405 2423 2.289506 GGTAACAGGAGACAAGGGACAC 60.290 54.545 0.00 0.00 0.00 3.67
2406 2424 0.393077 AACAGGAGACAAGGGACACG 59.607 55.000 0.00 0.00 0.00 4.49
2407 2425 1.293498 CAGGAGACAAGGGACACGG 59.707 63.158 0.00 0.00 0.00 4.94
2408 2426 1.152312 AGGAGACAAGGGACACGGT 60.152 57.895 0.00 0.00 0.00 4.83
2409 2427 1.004918 GGAGACAAGGGACACGGTG 60.005 63.158 6.58 6.58 0.00 4.94
2410 2428 1.746517 GAGACAAGGGACACGGTGT 59.253 57.895 14.66 14.66 0.00 4.16
2411 2429 0.106149 GAGACAAGGGACACGGTGTT 59.894 55.000 15.94 0.00 0.00 3.32
2412 2430 0.544697 AGACAAGGGACACGGTGTTT 59.455 50.000 15.94 2.92 0.00 2.83
2413 2431 1.764134 AGACAAGGGACACGGTGTTTA 59.236 47.619 15.94 0.00 0.00 2.01
2414 2432 1.869132 GACAAGGGACACGGTGTTTAC 59.131 52.381 15.94 8.88 0.00 2.01
2415 2433 1.232119 CAAGGGACACGGTGTTTACC 58.768 55.000 15.94 16.90 43.89 2.85
2416 2434 0.109153 AAGGGACACGGTGTTTACCC 59.891 55.000 22.60 22.60 44.53 3.69
2417 2435 1.055551 AGGGACACGGTGTTTACCCA 61.056 55.000 28.35 0.00 44.53 4.51
2418 2436 0.604511 GGGACACGGTGTTTACCCAG 60.605 60.000 24.26 0.00 44.53 4.45
2419 2437 0.604511 GGACACGGTGTTTACCCAGG 60.605 60.000 15.94 0.00 44.53 4.45
2420 2438 0.107268 GACACGGTGTTTACCCAGGT 59.893 55.000 15.94 0.00 44.53 4.00
2421 2439 0.547553 ACACGGTGTTTACCCAGGTT 59.452 50.000 8.21 0.00 44.53 3.50
2422 2440 1.232119 CACGGTGTTTACCCAGGTTC 58.768 55.000 0.00 0.00 44.53 3.62
2423 2441 0.249996 ACGGTGTTTACCCAGGTTCG 60.250 55.000 0.00 0.00 44.53 3.95
2424 2442 1.571215 CGGTGTTTACCCAGGTTCGC 61.571 60.000 0.00 0.00 44.53 4.70
2425 2443 1.571215 GGTGTTTACCCAGGTTCGCG 61.571 60.000 0.00 0.00 41.36 5.87
2426 2444 1.962306 TGTTTACCCAGGTTCGCGC 60.962 57.895 0.00 0.00 0.00 6.86
2427 2445 2.358984 TTTACCCAGGTTCGCGCC 60.359 61.111 0.00 0.00 0.00 6.53
2428 2446 3.905437 TTTACCCAGGTTCGCGCCC 62.905 63.158 0.00 3.39 0.00 6.13
2432 2450 2.983592 CCAGGTTCGCGCCCTTTT 60.984 61.111 13.65 0.00 0.00 2.27
2433 2451 1.673009 CCAGGTTCGCGCCCTTTTA 60.673 57.895 13.65 0.00 0.00 1.52
2434 2452 1.238625 CCAGGTTCGCGCCCTTTTAA 61.239 55.000 13.65 0.00 0.00 1.52
2435 2453 0.808755 CAGGTTCGCGCCCTTTTAAT 59.191 50.000 13.65 0.00 0.00 1.40
2436 2454 0.808755 AGGTTCGCGCCCTTTTAATG 59.191 50.000 10.91 0.00 0.00 1.90
2437 2455 0.179148 GGTTCGCGCCCTTTTAATGG 60.179 55.000 0.00 0.00 0.00 3.16
2438 2456 0.806241 GTTCGCGCCCTTTTAATGGA 59.194 50.000 0.00 0.00 0.00 3.41
2439 2457 1.091537 TTCGCGCCCTTTTAATGGAG 58.908 50.000 0.00 0.00 0.00 3.86
2440 2458 0.746563 TCGCGCCCTTTTAATGGAGG 60.747 55.000 0.00 0.00 0.00 4.30
2441 2459 1.029947 CGCGCCCTTTTAATGGAGGT 61.030 55.000 0.00 0.00 0.00 3.85
2442 2460 1.744456 CGCGCCCTTTTAATGGAGGTA 60.744 52.381 0.00 0.00 0.00 3.08
2443 2461 2.371306 GCGCCCTTTTAATGGAGGTAA 58.629 47.619 0.00 0.00 0.00 2.85
2444 2462 2.956333 GCGCCCTTTTAATGGAGGTAAT 59.044 45.455 0.00 0.00 0.00 1.89
2445 2463 4.139038 GCGCCCTTTTAATGGAGGTAATA 58.861 43.478 0.00 0.00 0.00 0.98
2446 2464 4.023450 GCGCCCTTTTAATGGAGGTAATAC 60.023 45.833 0.00 0.00 0.00 1.89
2447 2465 4.517832 CGCCCTTTTAATGGAGGTAATACC 59.482 45.833 0.07 0.07 38.99 2.73
2448 2466 4.831155 GCCCTTTTAATGGAGGTAATACCC 59.169 45.833 5.71 0.00 39.75 3.69
2449 2467 5.399842 GCCCTTTTAATGGAGGTAATACCCT 60.400 44.000 5.71 0.00 39.75 4.34
2450 2468 6.183361 GCCCTTTTAATGGAGGTAATACCCTA 60.183 42.308 5.71 0.00 39.75 3.53
2451 2469 7.229308 CCCTTTTAATGGAGGTAATACCCTAC 58.771 42.308 5.71 0.00 39.75 3.18
2452 2470 7.073343 CCCTTTTAATGGAGGTAATACCCTACT 59.927 40.741 5.71 0.00 39.75 2.57
2453 2471 8.500238 CCTTTTAATGGAGGTAATACCCTACTT 58.500 37.037 5.71 0.00 39.75 2.24
2454 2472 9.557061 CTTTTAATGGAGGTAATACCCTACTTC 57.443 37.037 5.71 0.00 39.75 3.01
2455 2473 7.622502 TTAATGGAGGTAATACCCTACTTCC 57.377 40.000 5.71 6.77 44.47 3.46
2456 2474 4.913154 TGGAGGTAATACCCTACTTCCT 57.087 45.455 13.63 0.00 44.50 3.36
2457 2475 4.553678 TGGAGGTAATACCCTACTTCCTG 58.446 47.826 13.63 0.00 44.50 3.86
2458 2476 3.324268 GGAGGTAATACCCTACTTCCTGC 59.676 52.174 5.71 0.00 42.18 4.85
2459 2477 4.224762 GAGGTAATACCCTACTTCCTGCT 58.775 47.826 5.71 0.00 39.75 4.24
2460 2478 4.632292 AGGTAATACCCTACTTCCTGCTT 58.368 43.478 5.71 0.00 39.75 3.91
2461 2479 4.409247 AGGTAATACCCTACTTCCTGCTTG 59.591 45.833 5.71 0.00 39.75 4.01
2462 2480 4.407945 GGTAATACCCTACTTCCTGCTTGA 59.592 45.833 0.00 0.00 30.04 3.02
2463 2481 5.071923 GGTAATACCCTACTTCCTGCTTGAT 59.928 44.000 0.00 0.00 30.04 2.57
2464 2482 5.717119 AATACCCTACTTCCTGCTTGATT 57.283 39.130 0.00 0.00 0.00 2.57
2465 2483 3.356529 ACCCTACTTCCTGCTTGATTG 57.643 47.619 0.00 0.00 0.00 2.67
2466 2484 2.912956 ACCCTACTTCCTGCTTGATTGA 59.087 45.455 0.00 0.00 0.00 2.57
2467 2485 3.525199 ACCCTACTTCCTGCTTGATTGAT 59.475 43.478 0.00 0.00 0.00 2.57
2468 2486 4.133078 CCCTACTTCCTGCTTGATTGATC 58.867 47.826 0.00 0.00 0.00 2.92
2469 2487 4.141528 CCCTACTTCCTGCTTGATTGATCT 60.142 45.833 0.00 0.00 0.00 2.75
2470 2488 5.435291 CCTACTTCCTGCTTGATTGATCTT 58.565 41.667 0.00 0.00 0.00 2.40
2471 2489 5.296283 CCTACTTCCTGCTTGATTGATCTTG 59.704 44.000 0.00 0.00 0.00 3.02
2472 2490 4.914983 ACTTCCTGCTTGATTGATCTTGA 58.085 39.130 0.00 0.00 0.00 3.02
2473 2491 5.507637 ACTTCCTGCTTGATTGATCTTGAT 58.492 37.500 0.00 0.00 0.00 2.57
2474 2492 5.357314 ACTTCCTGCTTGATTGATCTTGATG 59.643 40.000 0.00 0.00 0.00 3.07
2475 2493 5.106876 TCCTGCTTGATTGATCTTGATGA 57.893 39.130 0.00 0.00 0.00 2.92
2476 2494 5.503002 TCCTGCTTGATTGATCTTGATGAA 58.497 37.500 0.00 0.00 0.00 2.57
2477 2495 6.127101 TCCTGCTTGATTGATCTTGATGAAT 58.873 36.000 0.00 0.00 0.00 2.57
2478 2496 7.284820 TCCTGCTTGATTGATCTTGATGAATA 58.715 34.615 0.00 0.00 0.00 1.75
2479 2497 7.942894 TCCTGCTTGATTGATCTTGATGAATAT 59.057 33.333 0.00 0.00 0.00 1.28
2480 2498 8.023706 CCTGCTTGATTGATCTTGATGAATATG 58.976 37.037 0.00 0.00 0.00 1.78
2481 2499 8.685838 TGCTTGATTGATCTTGATGAATATGA 57.314 30.769 0.00 0.00 0.00 2.15
2482 2500 8.784043 TGCTTGATTGATCTTGATGAATATGAG 58.216 33.333 0.00 0.00 0.00 2.90
2483 2501 8.237949 GCTTGATTGATCTTGATGAATATGAGG 58.762 37.037 0.00 0.00 0.00 3.86
2484 2502 9.503399 CTTGATTGATCTTGATGAATATGAGGA 57.497 33.333 0.00 0.00 0.00 3.71
2493 2511 9.993454 TCTTGATGAATATGAGGATTACAAGAG 57.007 33.333 0.00 0.00 33.62 2.85
2494 2512 9.775854 CTTGATGAATATGAGGATTACAAGAGT 57.224 33.333 0.00 0.00 32.48 3.24
2496 2514 9.551734 TGATGAATATGAGGATTACAAGAGTTG 57.448 33.333 0.00 0.00 0.00 3.16
2497 2515 9.770097 GATGAATATGAGGATTACAAGAGTTGA 57.230 33.333 0.00 0.00 0.00 3.18
2499 2517 9.770097 TGAATATGAGGATTACAAGAGTTGATC 57.230 33.333 0.00 0.00 0.00 2.92
2500 2518 9.995003 GAATATGAGGATTACAAGAGTTGATCT 57.005 33.333 0.00 0.00 41.27 2.75
2503 2521 7.113658 TGAGGATTACAAGAGTTGATCTACC 57.886 40.000 3.54 0.00 37.23 3.18
2504 2522 6.897966 TGAGGATTACAAGAGTTGATCTACCT 59.102 38.462 3.54 0.00 37.23 3.08
2505 2523 7.400339 TGAGGATTACAAGAGTTGATCTACCTT 59.600 37.037 3.54 4.78 37.23 3.50
2506 2524 7.560368 AGGATTACAAGAGTTGATCTACCTTG 58.440 38.462 23.37 23.37 37.23 3.61
2507 2525 7.400339 AGGATTACAAGAGTTGATCTACCTTGA 59.600 37.037 27.70 16.39 37.23 3.02
2508 2526 7.708752 GGATTACAAGAGTTGATCTACCTTGAG 59.291 40.741 27.70 14.25 37.23 3.02
2509 2527 7.776618 TTACAAGAGTTGATCTACCTTGAGA 57.223 36.000 27.70 18.79 37.23 3.27
2510 2528 6.865834 ACAAGAGTTGATCTACCTTGAGAT 57.134 37.500 27.70 14.24 37.23 2.75
2522 2540 6.820335 TCTACCTTGAGATCATATGTTGTGG 58.180 40.000 1.90 0.83 0.00 4.17
2523 2541 5.441718 ACCTTGAGATCATATGTTGTGGT 57.558 39.130 1.90 1.40 0.00 4.16
2524 2542 5.431765 ACCTTGAGATCATATGTTGTGGTC 58.568 41.667 1.90 0.00 0.00 4.02
2525 2543 5.190528 ACCTTGAGATCATATGTTGTGGTCT 59.809 40.000 1.90 0.00 0.00 3.85
2526 2544 6.384015 ACCTTGAGATCATATGTTGTGGTCTA 59.616 38.462 1.90 0.00 0.00 2.59
2527 2545 7.092891 ACCTTGAGATCATATGTTGTGGTCTAA 60.093 37.037 1.90 0.00 0.00 2.10
2528 2546 7.770433 CCTTGAGATCATATGTTGTGGTCTAAA 59.230 37.037 1.90 0.00 0.00 1.85
2529 2547 8.492673 TTGAGATCATATGTTGTGGTCTAAAC 57.507 34.615 1.90 0.00 0.00 2.01
2530 2548 7.047891 TGAGATCATATGTTGTGGTCTAAACC 58.952 38.462 1.90 0.00 46.66 3.27
2574 2592 5.233083 TCATAATCTATCAACCAGCCTGG 57.767 43.478 9.83 9.83 45.02 4.45
2575 2593 2.355010 AATCTATCAACCAGCCTGGC 57.645 50.000 11.63 11.65 42.67 4.85
2576 2594 0.475906 ATCTATCAACCAGCCTGGCC 59.524 55.000 16.57 0.00 42.67 5.36
2577 2595 0.621571 TCTATCAACCAGCCTGGCCT 60.622 55.000 16.57 0.00 42.67 5.19
2578 2596 0.179034 CTATCAACCAGCCTGGCCTC 60.179 60.000 16.57 0.00 42.67 4.70
2579 2597 1.971505 TATCAACCAGCCTGGCCTCG 61.972 60.000 16.57 5.33 42.67 4.63
2586 2604 3.148084 GCCTGGCCTCGGCTTATA 58.852 61.111 24.05 0.00 44.17 0.98
2587 2605 1.679898 GCCTGGCCTCGGCTTATAT 59.320 57.895 24.05 0.00 44.17 0.86
2588 2606 0.902531 GCCTGGCCTCGGCTTATATA 59.097 55.000 24.05 0.00 44.17 0.86
2589 2607 1.278127 GCCTGGCCTCGGCTTATATAA 59.722 52.381 24.05 0.00 44.17 0.98
2590 2608 2.935676 GCCTGGCCTCGGCTTATATAAC 60.936 54.545 24.05 0.00 44.17 1.89
2591 2609 2.301870 CCTGGCCTCGGCTTATATAACA 59.698 50.000 3.32 0.00 41.60 2.41
2592 2610 3.055094 CCTGGCCTCGGCTTATATAACAT 60.055 47.826 3.32 0.00 41.60 2.71
2593 2611 4.161565 CCTGGCCTCGGCTTATATAACATA 59.838 45.833 3.32 0.00 41.60 2.29
2594 2612 5.080969 TGGCCTCGGCTTATATAACATAC 57.919 43.478 3.32 0.00 41.60 2.39
2595 2613 4.081309 TGGCCTCGGCTTATATAACATACC 60.081 45.833 3.32 0.00 41.60 2.73
2596 2614 4.081309 GGCCTCGGCTTATATAACATACCA 60.081 45.833 8.00 0.00 41.60 3.25
2597 2615 5.109903 GCCTCGGCTTATATAACATACCAG 58.890 45.833 0.00 0.00 38.26 4.00
2598 2616 5.105473 GCCTCGGCTTATATAACATACCAGA 60.105 44.000 0.00 0.00 38.26 3.86
2599 2617 6.565234 CCTCGGCTTATATAACATACCAGAG 58.435 44.000 0.00 3.70 0.00 3.35
2600 2618 6.405953 CCTCGGCTTATATAACATACCAGAGG 60.406 46.154 15.63 15.63 33.51 3.69
2601 2619 5.105473 TCGGCTTATATAACATACCAGAGGC 60.105 44.000 0.00 0.00 0.00 4.70
2602 2620 5.109903 GGCTTATATAACATACCAGAGGCG 58.890 45.833 0.00 0.00 0.00 5.52
2603 2621 5.337330 GGCTTATATAACATACCAGAGGCGT 60.337 44.000 0.00 0.00 0.00 5.68
2604 2622 6.127535 GGCTTATATAACATACCAGAGGCGTA 60.128 42.308 0.00 0.00 0.00 4.42
2605 2623 6.973474 GCTTATATAACATACCAGAGGCGTAG 59.027 42.308 0.00 0.00 0.00 3.51
2606 2624 5.916661 ATATAACATACCAGAGGCGTAGG 57.083 43.478 0.00 0.00 0.00 3.18
2607 2625 2.154567 AACATACCAGAGGCGTAGGA 57.845 50.000 4.54 0.00 0.00 2.94
2608 2626 2.383442 ACATACCAGAGGCGTAGGAT 57.617 50.000 4.54 0.00 0.00 3.24
2609 2627 3.520691 ACATACCAGAGGCGTAGGATA 57.479 47.619 4.54 0.00 0.00 2.59
2610 2628 3.840991 ACATACCAGAGGCGTAGGATAA 58.159 45.455 4.54 0.00 0.00 1.75
2611 2629 3.573110 ACATACCAGAGGCGTAGGATAAC 59.427 47.826 4.54 0.00 0.00 1.89
2612 2630 2.154567 ACCAGAGGCGTAGGATAACA 57.845 50.000 4.54 0.00 0.00 2.41
2613 2631 2.463752 ACCAGAGGCGTAGGATAACAA 58.536 47.619 4.54 0.00 0.00 2.83
2614 2632 2.431057 ACCAGAGGCGTAGGATAACAAG 59.569 50.000 4.54 0.00 0.00 3.16
2615 2633 2.693591 CCAGAGGCGTAGGATAACAAGA 59.306 50.000 0.00 0.00 0.00 3.02
2616 2634 3.243569 CCAGAGGCGTAGGATAACAAGAG 60.244 52.174 0.00 0.00 0.00 2.85
2617 2635 3.381908 CAGAGGCGTAGGATAACAAGAGT 59.618 47.826 0.00 0.00 0.00 3.24
2618 2636 3.633065 AGAGGCGTAGGATAACAAGAGTC 59.367 47.826 0.00 0.00 0.00 3.36
2619 2637 2.694109 AGGCGTAGGATAACAAGAGTCC 59.306 50.000 0.00 0.00 0.00 3.85
2620 2638 2.694109 GGCGTAGGATAACAAGAGTCCT 59.306 50.000 0.00 0.00 44.31 3.85
2621 2639 3.887716 GGCGTAGGATAACAAGAGTCCTA 59.112 47.826 0.00 0.00 42.24 2.94
2622 2640 4.023021 GGCGTAGGATAACAAGAGTCCTAG 60.023 50.000 0.82 0.00 43.35 3.02
2623 2641 4.579753 GCGTAGGATAACAAGAGTCCTAGT 59.420 45.833 0.82 0.00 43.35 2.57
2624 2642 5.277925 GCGTAGGATAACAAGAGTCCTAGTC 60.278 48.000 0.82 0.00 43.35 2.59
2625 2643 5.050227 CGTAGGATAACAAGAGTCCTAGTCG 60.050 48.000 0.82 0.00 43.35 4.18
2626 2644 5.113446 AGGATAACAAGAGTCCTAGTCGA 57.887 43.478 0.00 0.00 40.49 4.20
2627 2645 5.507637 AGGATAACAAGAGTCCTAGTCGAA 58.492 41.667 0.00 0.00 40.49 3.71
2628 2646 6.130569 AGGATAACAAGAGTCCTAGTCGAAT 58.869 40.000 0.00 0.00 40.49 3.34
2629 2647 7.288560 AGGATAACAAGAGTCCTAGTCGAATA 58.711 38.462 0.00 0.00 40.49 1.75
2630 2648 7.446013 AGGATAACAAGAGTCCTAGTCGAATAG 59.554 40.741 12.86 12.86 40.49 1.73
2631 2649 5.838531 AACAAGAGTCCTAGTCGAATAGG 57.161 43.478 28.82 28.82 43.30 2.57
2632 2650 4.857679 ACAAGAGTCCTAGTCGAATAGGT 58.142 43.478 31.76 18.31 42.63 3.08
2633 2651 4.883006 ACAAGAGTCCTAGTCGAATAGGTC 59.117 45.833 31.76 27.32 42.63 3.85
2643 2661 0.669077 CGAATAGGTCGGTGGAGAGG 59.331 60.000 0.00 0.00 46.45 3.69
2644 2662 1.749635 CGAATAGGTCGGTGGAGAGGA 60.750 57.143 0.00 0.00 46.45 3.71
2645 2663 1.957877 GAATAGGTCGGTGGAGAGGAG 59.042 57.143 0.00 0.00 0.00 3.69
2646 2664 0.927767 ATAGGTCGGTGGAGAGGAGT 59.072 55.000 0.00 0.00 0.00 3.85
2647 2665 0.255318 TAGGTCGGTGGAGAGGAGTC 59.745 60.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 9.045223 GTTCAAACTTATTTTGCAAGGAGAATT 57.955 29.630 0.00 0.00 43.90 2.17
125 126 5.696270 GGGTTCAAACTTATTTTGCAAGGAG 59.304 40.000 0.00 0.00 43.90 3.69
126 127 5.606505 GGGTTCAAACTTATTTTGCAAGGA 58.393 37.500 0.00 0.00 43.90 3.36
127 128 4.447389 CGGGTTCAAACTTATTTTGCAAGG 59.553 41.667 0.00 0.00 43.90 3.61
129 130 5.163499 ACTCGGGTTCAAACTTATTTTGCAA 60.163 36.000 0.00 0.00 43.90 4.08
169 171 8.428063 AGGTGTATATTGAGAAGAAAGATGAGG 58.572 37.037 0.00 0.00 0.00 3.86
203 205 3.964411 TGAAACGAGGATAGGTCTCTCA 58.036 45.455 0.00 0.00 0.00 3.27
277 279 3.814283 CCTTTAGAATCATCAGCCTCTGC 59.186 47.826 0.00 0.00 37.95 4.26
366 368 8.586570 AGATCAATTCATATCGACAAGACTTC 57.413 34.615 0.00 0.00 0.00 3.01
398 400 5.295431 TCGAAATCGAAGCATTGTCATTT 57.705 34.783 2.51 0.00 46.30 2.32
554 556 0.458543 AGCCGAGTATGTGCAAGACG 60.459 55.000 0.00 0.00 0.00 4.18
705 707 4.398044 TCACACAGTATGCTGATCGTTCTA 59.602 41.667 18.40 0.00 45.28 2.10
802 804 6.519213 GCCCGTCCTTCTCTATCTATGAATTT 60.519 42.308 0.00 0.00 0.00 1.82
842 852 3.067742 ACATTGATCCGGGTAGTTAGTCG 59.932 47.826 0.00 0.00 0.00 4.18
864 874 7.498900 ACGGCTATTTATTCAGTCATCAATCAA 59.501 33.333 0.00 0.00 0.00 2.57
1031 1041 3.629058 TGTTCAAGAAAGAGTCGTCTCG 58.371 45.455 4.01 0.00 44.65 4.04
1062 1072 1.280457 GTGTGGAGGGGAAGATCTGT 58.720 55.000 0.00 0.00 0.00 3.41
1147 1164 8.042515 ACCTAAATGGGAATGACATGAAAAATG 58.957 33.333 0.00 0.00 41.11 2.32
1308 1325 4.632688 CGACTTATTTGAATAACCCGGTGT 59.367 41.667 0.00 0.00 0.00 4.16
1383 1400 5.505780 AGAATGTTTAACCGATCCATTCCA 58.494 37.500 12.27 0.00 41.31 3.53
1418 1435 3.646162 ACCACACATAAGAGTCAAGACCA 59.354 43.478 0.00 0.00 0.00 4.02
1432 1449 4.566759 CGAACGAGAATGAATACCACACAT 59.433 41.667 0.00 0.00 0.00 3.21
1490 1507 1.981256 AGTGGTTGGATTTTGCGAGT 58.019 45.000 0.00 0.00 0.00 4.18
1542 1559 5.941555 ACCCTTCTGTTTCTATAGAGGTG 57.058 43.478 2.02 0.00 0.00 4.00
1805 1823 8.615211 GTTAGCATGAACACATGAATGAGATTA 58.385 33.333 13.30 0.00 42.56 1.75
1862 1880 2.607187 CATCGCTGTTAAGAACGACCT 58.393 47.619 0.00 0.00 37.37 3.85
1866 1884 1.359848 AGCCATCGCTGTTAAGAACG 58.640 50.000 0.00 0.00 46.19 3.95
1914 1932 6.779539 AGAATTTCCACCTTGTTGAAGATCTT 59.220 34.615 7.95 7.95 0.00 2.40
2034 2052 2.481289 AGAGCGAAGAAAAAGGGGAG 57.519 50.000 0.00 0.00 0.00 4.30
2144 2162 2.063015 AAACGAGCATCCCACACCCA 62.063 55.000 0.00 0.00 0.00 4.51
2187 2205 3.453353 ACGTAGTGCACCCAGGTAAATAT 59.547 43.478 14.63 0.00 42.51 1.28
2310 2328 1.147376 CACCGACACCCAGGTTGAA 59.853 57.895 0.00 0.00 39.00 2.69
2325 2343 0.521735 GATCTGCCGGTTTTGACACC 59.478 55.000 1.90 0.00 0.00 4.16
2326 2344 1.464997 GAGATCTGCCGGTTTTGACAC 59.535 52.381 0.00 0.00 0.00 3.67
2327 2345 1.808411 GAGATCTGCCGGTTTTGACA 58.192 50.000 0.00 0.00 0.00 3.58
2328 2346 0.721718 CGAGATCTGCCGGTTTTGAC 59.278 55.000 0.00 0.00 0.00 3.18
2329 2347 0.391130 CCGAGATCTGCCGGTTTTGA 60.391 55.000 13.39 0.00 40.78 2.69
2330 2348 1.369091 CCCGAGATCTGCCGGTTTTG 61.369 60.000 18.55 3.10 43.93 2.44
2331 2349 1.078426 CCCGAGATCTGCCGGTTTT 60.078 57.895 18.55 0.00 43.93 2.43
2332 2350 0.974010 TACCCGAGATCTGCCGGTTT 60.974 55.000 18.55 9.73 43.93 3.27
2333 2351 1.380785 TACCCGAGATCTGCCGGTT 60.381 57.895 18.55 9.56 43.93 4.44
2334 2352 1.828660 CTACCCGAGATCTGCCGGT 60.829 63.158 18.55 13.92 43.93 5.28
2335 2353 2.565645 CCTACCCGAGATCTGCCGG 61.566 68.421 14.42 14.42 44.94 6.13
2336 2354 1.519751 CTCCTACCCGAGATCTGCCG 61.520 65.000 0.00 0.00 30.97 5.69
2337 2355 1.182385 CCTCCTACCCGAGATCTGCC 61.182 65.000 0.00 0.00 30.97 4.85
2338 2356 0.468400 ACCTCCTACCCGAGATCTGC 60.468 60.000 0.00 0.00 30.97 4.26
2339 2357 1.683917 CAACCTCCTACCCGAGATCTG 59.316 57.143 0.00 0.00 30.97 2.90
2340 2358 2.030045 GCAACCTCCTACCCGAGATCT 61.030 57.143 0.00 0.00 30.97 2.75
2341 2359 0.389757 GCAACCTCCTACCCGAGATC 59.610 60.000 0.00 0.00 30.97 2.75
2342 2360 0.325296 TGCAACCTCCTACCCGAGAT 60.325 55.000 0.00 0.00 30.97 2.75
2343 2361 0.543410 TTGCAACCTCCTACCCGAGA 60.543 55.000 0.00 0.00 30.97 4.04
2344 2362 0.108138 CTTGCAACCTCCTACCCGAG 60.108 60.000 0.00 0.00 0.00 4.63
2345 2363 1.980052 CTTGCAACCTCCTACCCGA 59.020 57.895 0.00 0.00 0.00 5.14
2346 2364 1.745489 GCTTGCAACCTCCTACCCG 60.745 63.158 0.00 0.00 0.00 5.28
2347 2365 0.678048 CAGCTTGCAACCTCCTACCC 60.678 60.000 0.00 0.00 0.00 3.69
2348 2366 0.036875 ACAGCTTGCAACCTCCTACC 59.963 55.000 0.00 0.00 0.00 3.18
2349 2367 1.160137 CACAGCTTGCAACCTCCTAC 58.840 55.000 0.00 0.00 0.00 3.18
2350 2368 1.055849 TCACAGCTTGCAACCTCCTA 58.944 50.000 0.00 0.00 0.00 2.94
2351 2369 0.183492 TTCACAGCTTGCAACCTCCT 59.817 50.000 0.00 0.00 0.00 3.69
2352 2370 1.200948 GATTCACAGCTTGCAACCTCC 59.799 52.381 0.00 0.00 0.00 4.30
2353 2371 2.157738 AGATTCACAGCTTGCAACCTC 58.842 47.619 0.00 0.00 0.00 3.85
2354 2372 2.283145 AGATTCACAGCTTGCAACCT 57.717 45.000 0.00 0.00 0.00 3.50
2355 2373 2.421424 CCTAGATTCACAGCTTGCAACC 59.579 50.000 0.00 0.00 0.00 3.77
2356 2374 3.338249 TCCTAGATTCACAGCTTGCAAC 58.662 45.455 0.00 0.00 0.00 4.17
2357 2375 3.701205 TCCTAGATTCACAGCTTGCAA 57.299 42.857 0.00 0.00 0.00 4.08
2358 2376 3.739209 CGATCCTAGATTCACAGCTTGCA 60.739 47.826 0.00 0.00 0.00 4.08
2359 2377 2.799412 CGATCCTAGATTCACAGCTTGC 59.201 50.000 0.00 0.00 0.00 4.01
2360 2378 4.313277 TCGATCCTAGATTCACAGCTTG 57.687 45.455 0.00 0.00 0.00 4.01
2361 2379 4.262377 CCATCGATCCTAGATTCACAGCTT 60.262 45.833 0.00 0.00 0.00 3.74
2362 2380 3.257873 CCATCGATCCTAGATTCACAGCT 59.742 47.826 0.00 0.00 0.00 4.24
2363 2381 3.583806 CCATCGATCCTAGATTCACAGC 58.416 50.000 0.00 0.00 0.00 4.40
2364 2382 3.576118 ACCCATCGATCCTAGATTCACAG 59.424 47.826 0.00 0.00 0.00 3.66
2365 2383 3.576861 ACCCATCGATCCTAGATTCACA 58.423 45.455 0.00 0.00 0.00 3.58
2366 2384 5.010719 TGTTACCCATCGATCCTAGATTCAC 59.989 44.000 0.00 0.00 0.00 3.18
2367 2385 5.144832 TGTTACCCATCGATCCTAGATTCA 58.855 41.667 0.00 0.00 0.00 2.57
2368 2386 5.336849 CCTGTTACCCATCGATCCTAGATTC 60.337 48.000 0.00 0.00 0.00 2.52
2369 2387 4.528596 CCTGTTACCCATCGATCCTAGATT 59.471 45.833 0.00 0.00 0.00 2.40
2370 2388 4.090090 CCTGTTACCCATCGATCCTAGAT 58.910 47.826 0.00 0.00 0.00 1.98
2371 2389 3.139584 TCCTGTTACCCATCGATCCTAGA 59.860 47.826 0.00 0.00 0.00 2.43
2372 2390 3.497332 TCCTGTTACCCATCGATCCTAG 58.503 50.000 0.00 0.00 0.00 3.02
2373 2391 3.139584 TCTCCTGTTACCCATCGATCCTA 59.860 47.826 0.00 0.00 0.00 2.94
2374 2392 2.091278 TCTCCTGTTACCCATCGATCCT 60.091 50.000 0.00 0.00 0.00 3.24
2375 2393 2.036089 GTCTCCTGTTACCCATCGATCC 59.964 54.545 0.00 0.00 0.00 3.36
2376 2394 2.693591 TGTCTCCTGTTACCCATCGATC 59.306 50.000 0.00 0.00 0.00 3.69
2377 2395 2.747177 TGTCTCCTGTTACCCATCGAT 58.253 47.619 0.00 0.00 0.00 3.59
2378 2396 2.225382 TGTCTCCTGTTACCCATCGA 57.775 50.000 0.00 0.00 0.00 3.59
2379 2397 2.418746 CCTTGTCTCCTGTTACCCATCG 60.419 54.545 0.00 0.00 0.00 3.84
2380 2398 2.092914 CCCTTGTCTCCTGTTACCCATC 60.093 54.545 0.00 0.00 0.00 3.51
2381 2399 1.916181 CCCTTGTCTCCTGTTACCCAT 59.084 52.381 0.00 0.00 0.00 4.00
2382 2400 1.132657 TCCCTTGTCTCCTGTTACCCA 60.133 52.381 0.00 0.00 0.00 4.51
2383 2401 1.278413 GTCCCTTGTCTCCTGTTACCC 59.722 57.143 0.00 0.00 0.00 3.69
2384 2402 1.975680 TGTCCCTTGTCTCCTGTTACC 59.024 52.381 0.00 0.00 0.00 2.85
2385 2403 2.609737 CGTGTCCCTTGTCTCCTGTTAC 60.610 54.545 0.00 0.00 0.00 2.50
2386 2404 1.616865 CGTGTCCCTTGTCTCCTGTTA 59.383 52.381 0.00 0.00 0.00 2.41
2387 2405 0.393077 CGTGTCCCTTGTCTCCTGTT 59.607 55.000 0.00 0.00 0.00 3.16
2388 2406 1.472662 CCGTGTCCCTTGTCTCCTGT 61.473 60.000 0.00 0.00 0.00 4.00
2389 2407 1.293498 CCGTGTCCCTTGTCTCCTG 59.707 63.158 0.00 0.00 0.00 3.86
2390 2408 1.152312 ACCGTGTCCCTTGTCTCCT 60.152 57.895 0.00 0.00 0.00 3.69
2391 2409 1.004918 CACCGTGTCCCTTGTCTCC 60.005 63.158 0.00 0.00 0.00 3.71
2392 2410 0.106149 AACACCGTGTCCCTTGTCTC 59.894 55.000 4.23 0.00 0.00 3.36
2393 2411 0.544697 AAACACCGTGTCCCTTGTCT 59.455 50.000 4.23 0.00 0.00 3.41
2394 2412 1.869132 GTAAACACCGTGTCCCTTGTC 59.131 52.381 4.23 0.00 0.00 3.18
2395 2413 1.475571 GGTAAACACCGTGTCCCTTGT 60.476 52.381 4.23 0.00 0.00 3.16
2396 2414 1.232119 GGTAAACACCGTGTCCCTTG 58.768 55.000 4.23 0.00 0.00 3.61
2397 2415 0.109153 GGGTAAACACCGTGTCCCTT 59.891 55.000 16.37 6.10 32.89 3.95
2398 2416 1.055551 TGGGTAAACACCGTGTCCCT 61.056 55.000 21.64 7.13 36.23 4.20
2399 2417 0.604511 CTGGGTAAACACCGTGTCCC 60.605 60.000 16.67 16.67 35.85 4.46
2400 2418 0.604511 CCTGGGTAAACACCGTGTCC 60.605 60.000 4.23 2.37 0.00 4.02
2401 2419 0.107268 ACCTGGGTAAACACCGTGTC 59.893 55.000 4.23 0.00 0.00 3.67
2402 2420 0.547553 AACCTGGGTAAACACCGTGT 59.452 50.000 0.00 0.00 0.00 4.49
2403 2421 1.232119 GAACCTGGGTAAACACCGTG 58.768 55.000 0.00 0.00 0.00 4.94
2404 2422 0.249996 CGAACCTGGGTAAACACCGT 60.250 55.000 0.00 0.00 0.00 4.83
2405 2423 1.571215 GCGAACCTGGGTAAACACCG 61.571 60.000 0.00 0.00 0.00 4.94
2406 2424 1.571215 CGCGAACCTGGGTAAACACC 61.571 60.000 0.00 0.00 0.00 4.16
2407 2425 1.864176 CGCGAACCTGGGTAAACAC 59.136 57.895 0.00 0.00 0.00 3.32
2408 2426 1.962306 GCGCGAACCTGGGTAAACA 60.962 57.895 12.10 0.00 0.00 2.83
2409 2427 2.683859 GGCGCGAACCTGGGTAAAC 61.684 63.158 12.10 0.00 0.00 2.01
2410 2428 2.358984 GGCGCGAACCTGGGTAAA 60.359 61.111 12.10 0.00 0.00 2.01
2411 2429 4.397832 GGGCGCGAACCTGGGTAA 62.398 66.667 12.10 0.00 0.00 2.85
2415 2433 1.238625 TTAAAAGGGCGCGAACCTGG 61.239 55.000 21.22 0.00 38.63 4.45
2416 2434 0.808755 ATTAAAAGGGCGCGAACCTG 59.191 50.000 21.22 0.00 38.63 4.00
2417 2435 0.808755 CATTAAAAGGGCGCGAACCT 59.191 50.000 12.10 14.49 40.96 3.50
2418 2436 0.179148 CCATTAAAAGGGCGCGAACC 60.179 55.000 12.10 11.91 0.00 3.62
2419 2437 0.806241 TCCATTAAAAGGGCGCGAAC 59.194 50.000 12.10 0.11 0.00 3.95
2420 2438 1.091537 CTCCATTAAAAGGGCGCGAA 58.908 50.000 12.10 0.00 0.00 4.70
2421 2439 0.746563 CCTCCATTAAAAGGGCGCGA 60.747 55.000 12.10 0.00 0.00 5.87
2422 2440 1.029947 ACCTCCATTAAAAGGGCGCG 61.030 55.000 0.00 0.00 36.95 6.86
2423 2441 2.047002 TACCTCCATTAAAAGGGCGC 57.953 50.000 0.00 0.00 36.95 6.53
2424 2442 4.517832 GGTATTACCTCCATTAAAAGGGCG 59.482 45.833 5.56 0.00 36.95 6.13
2425 2443 4.831155 GGGTATTACCTCCATTAAAAGGGC 59.169 45.833 12.54 0.00 38.64 5.19
2426 2444 6.275692 AGGGTATTACCTCCATTAAAAGGG 57.724 41.667 12.54 0.00 38.64 3.95
2427 2445 8.042286 AGTAGGGTATTACCTCCATTAAAAGG 57.958 38.462 12.54 1.46 42.09 3.11
2428 2446 9.557061 GAAGTAGGGTATTACCTCCATTAAAAG 57.443 37.037 12.54 0.00 42.09 2.27
2429 2447 8.496916 GGAAGTAGGGTATTACCTCCATTAAAA 58.503 37.037 12.54 0.00 42.09 1.52
2430 2448 7.853003 AGGAAGTAGGGTATTACCTCCATTAAA 59.147 37.037 16.39 0.00 42.09 1.52
2431 2449 7.291651 CAGGAAGTAGGGTATTACCTCCATTAA 59.708 40.741 16.39 0.00 42.09 1.40
2432 2450 6.785963 CAGGAAGTAGGGTATTACCTCCATTA 59.214 42.308 16.39 1.30 42.09 1.90
2433 2451 5.607171 CAGGAAGTAGGGTATTACCTCCATT 59.393 44.000 16.39 7.07 42.09 3.16
2434 2452 5.155905 CAGGAAGTAGGGTATTACCTCCAT 58.844 45.833 16.39 4.17 42.09 3.41
2435 2453 4.553678 CAGGAAGTAGGGTATTACCTCCA 58.446 47.826 16.39 0.80 42.09 3.86
2436 2454 3.324268 GCAGGAAGTAGGGTATTACCTCC 59.676 52.174 12.54 10.66 42.09 4.30
2437 2455 4.224762 AGCAGGAAGTAGGGTATTACCTC 58.775 47.826 12.54 2.11 42.09 3.85
2438 2456 4.282292 AGCAGGAAGTAGGGTATTACCT 57.718 45.455 12.54 2.07 44.75 3.08
2439 2457 4.407945 TCAAGCAGGAAGTAGGGTATTACC 59.592 45.833 4.11 4.11 37.60 2.85
2440 2458 5.609533 TCAAGCAGGAAGTAGGGTATTAC 57.390 43.478 0.00 0.00 0.00 1.89
2441 2459 6.385759 TCAATCAAGCAGGAAGTAGGGTATTA 59.614 38.462 0.00 0.00 0.00 0.98
2442 2460 5.191722 TCAATCAAGCAGGAAGTAGGGTATT 59.808 40.000 0.00 0.00 0.00 1.89
2443 2461 4.721776 TCAATCAAGCAGGAAGTAGGGTAT 59.278 41.667 0.00 0.00 0.00 2.73
2444 2462 4.101114 TCAATCAAGCAGGAAGTAGGGTA 58.899 43.478 0.00 0.00 0.00 3.69
2445 2463 2.912956 TCAATCAAGCAGGAAGTAGGGT 59.087 45.455 0.00 0.00 0.00 4.34
2446 2464 3.634397 TCAATCAAGCAGGAAGTAGGG 57.366 47.619 0.00 0.00 0.00 3.53
2447 2465 5.033589 AGATCAATCAAGCAGGAAGTAGG 57.966 43.478 0.00 0.00 0.00 3.18
2448 2466 6.111382 TCAAGATCAATCAAGCAGGAAGTAG 58.889 40.000 0.00 0.00 0.00 2.57
2449 2467 6.053632 TCAAGATCAATCAAGCAGGAAGTA 57.946 37.500 0.00 0.00 0.00 2.24
2450 2468 4.914983 TCAAGATCAATCAAGCAGGAAGT 58.085 39.130 0.00 0.00 0.00 3.01
2451 2469 5.589050 TCATCAAGATCAATCAAGCAGGAAG 59.411 40.000 0.00 0.00 0.00 3.46
2452 2470 5.503002 TCATCAAGATCAATCAAGCAGGAA 58.497 37.500 0.00 0.00 0.00 3.36
2453 2471 5.106876 TCATCAAGATCAATCAAGCAGGA 57.893 39.130 0.00 0.00 0.00 3.86
2454 2472 5.830000 TTCATCAAGATCAATCAAGCAGG 57.170 39.130 0.00 0.00 0.00 4.85
2455 2473 8.784043 TCATATTCATCAAGATCAATCAAGCAG 58.216 33.333 0.00 0.00 0.00 4.24
2456 2474 8.685838 TCATATTCATCAAGATCAATCAAGCA 57.314 30.769 0.00 0.00 0.00 3.91
2457 2475 8.237949 CCTCATATTCATCAAGATCAATCAAGC 58.762 37.037 0.00 0.00 0.00 4.01
2458 2476 9.503399 TCCTCATATTCATCAAGATCAATCAAG 57.497 33.333 0.00 0.00 0.00 3.02
2467 2485 9.993454 CTCTTGTAATCCTCATATTCATCAAGA 57.007 33.333 0.00 0.00 34.28 3.02
2468 2486 9.775854 ACTCTTGTAATCCTCATATTCATCAAG 57.224 33.333 0.00 0.00 0.00 3.02
2470 2488 9.551734 CAACTCTTGTAATCCTCATATTCATCA 57.448 33.333 0.00 0.00 0.00 3.07
2471 2489 9.770097 TCAACTCTTGTAATCCTCATATTCATC 57.230 33.333 0.00 0.00 0.00 2.92
2473 2491 9.770097 GATCAACTCTTGTAATCCTCATATTCA 57.230 33.333 0.00 0.00 0.00 2.57
2474 2492 9.995003 AGATCAACTCTTGTAATCCTCATATTC 57.005 33.333 0.00 0.00 0.00 1.75
2477 2495 8.861086 GGTAGATCAACTCTTGTAATCCTCATA 58.139 37.037 0.00 0.00 35.28 2.15
2478 2496 7.566879 AGGTAGATCAACTCTTGTAATCCTCAT 59.433 37.037 0.00 0.00 35.28 2.90
2479 2497 6.897966 AGGTAGATCAACTCTTGTAATCCTCA 59.102 38.462 0.00 0.00 35.28 3.86
2480 2498 7.354751 AGGTAGATCAACTCTTGTAATCCTC 57.645 40.000 0.00 0.00 35.28 3.71
2481 2499 7.400339 TCAAGGTAGATCAACTCTTGTAATCCT 59.600 37.037 13.71 0.00 36.94 3.24
2482 2500 7.556844 TCAAGGTAGATCAACTCTTGTAATCC 58.443 38.462 13.71 0.00 36.94 3.01
2483 2501 8.470805 TCTCAAGGTAGATCAACTCTTGTAATC 58.529 37.037 13.71 0.00 36.94 1.75
2484 2502 8.367660 TCTCAAGGTAGATCAACTCTTGTAAT 57.632 34.615 13.71 0.00 36.94 1.89
2485 2503 7.776618 TCTCAAGGTAGATCAACTCTTGTAA 57.223 36.000 13.71 5.35 36.94 2.41
2486 2504 7.962995 ATCTCAAGGTAGATCAACTCTTGTA 57.037 36.000 13.71 7.55 36.94 2.41
2487 2505 6.865834 ATCTCAAGGTAGATCAACTCTTGT 57.134 37.500 13.71 0.00 36.94 3.16
2497 2515 7.071698 ACCACAACATATGATCTCAAGGTAGAT 59.928 37.037 10.38 0.00 38.95 1.98
2498 2516 6.384015 ACCACAACATATGATCTCAAGGTAGA 59.616 38.462 10.38 0.00 0.00 2.59
2499 2517 6.586344 ACCACAACATATGATCTCAAGGTAG 58.414 40.000 10.38 0.00 0.00 3.18
2500 2518 6.384015 AGACCACAACATATGATCTCAAGGTA 59.616 38.462 10.38 0.00 0.00 3.08
2501 2519 5.190528 AGACCACAACATATGATCTCAAGGT 59.809 40.000 10.38 7.55 0.00 3.50
2502 2520 5.678583 AGACCACAACATATGATCTCAAGG 58.321 41.667 10.38 4.48 0.00 3.61
2503 2521 8.607459 GTTTAGACCACAACATATGATCTCAAG 58.393 37.037 10.38 0.00 0.00 3.02
2504 2522 7.552687 GGTTTAGACCACAACATATGATCTCAA 59.447 37.037 10.38 0.00 45.77 3.02
2505 2523 7.047891 GGTTTAGACCACAACATATGATCTCA 58.952 38.462 10.38 0.00 45.77 3.27
2506 2524 7.484035 GGTTTAGACCACAACATATGATCTC 57.516 40.000 10.38 0.00 45.77 2.75
2548 2566 8.051535 CCAGGCTGGTTGATAGATTATGATATT 58.948 37.037 25.74 0.00 31.35 1.28
2549 2567 7.571919 CCAGGCTGGTTGATAGATTATGATAT 58.428 38.462 25.74 0.00 31.35 1.63
2550 2568 6.577039 GCCAGGCTGGTTGATAGATTATGATA 60.577 42.308 32.80 0.00 40.46 2.15
2551 2569 5.805751 GCCAGGCTGGTTGATAGATTATGAT 60.806 44.000 32.80 0.00 40.46 2.45
2552 2570 4.505566 GCCAGGCTGGTTGATAGATTATGA 60.506 45.833 32.80 0.00 40.46 2.15
2553 2571 3.755378 GCCAGGCTGGTTGATAGATTATG 59.245 47.826 32.80 4.38 40.46 1.90
2554 2572 3.245052 GGCCAGGCTGGTTGATAGATTAT 60.245 47.826 32.80 0.00 40.46 1.28
2555 2573 2.106511 GGCCAGGCTGGTTGATAGATTA 59.893 50.000 32.80 0.00 40.46 1.75
2556 2574 1.133668 GGCCAGGCTGGTTGATAGATT 60.134 52.381 32.80 0.00 40.46 2.40
2557 2575 0.475906 GGCCAGGCTGGTTGATAGAT 59.524 55.000 32.80 0.00 40.46 1.98
2558 2576 0.621571 AGGCCAGGCTGGTTGATAGA 60.622 55.000 32.80 0.00 40.46 1.98
2559 2577 0.179034 GAGGCCAGGCTGGTTGATAG 60.179 60.000 32.80 7.84 40.46 2.08
2560 2578 1.915228 GAGGCCAGGCTGGTTGATA 59.085 57.895 32.80 0.00 40.46 2.15
2561 2579 2.679716 GAGGCCAGGCTGGTTGAT 59.320 61.111 32.80 17.18 40.46 2.57
2562 2580 4.020617 CGAGGCCAGGCTGGTTGA 62.021 66.667 32.80 0.00 40.46 3.18
2570 2588 2.301870 TGTTATATAAGCCGAGGCCAGG 59.698 50.000 10.95 9.58 43.17 4.45
2571 2589 3.678056 TGTTATATAAGCCGAGGCCAG 57.322 47.619 10.95 0.00 43.17 4.85
2572 2590 4.081309 GGTATGTTATATAAGCCGAGGCCA 60.081 45.833 10.95 0.00 43.17 5.36
2573 2591 4.081309 TGGTATGTTATATAAGCCGAGGCC 60.081 45.833 10.95 0.00 43.17 5.19
2574 2592 5.080969 TGGTATGTTATATAAGCCGAGGC 57.919 43.478 5.89 5.89 42.33 4.70
2575 2593 6.405953 CCTCTGGTATGTTATATAAGCCGAGG 60.406 46.154 18.10 18.10 33.13 4.63
2576 2594 6.565234 CCTCTGGTATGTTATATAAGCCGAG 58.435 44.000 0.00 7.43 0.00 4.63
2577 2595 5.105473 GCCTCTGGTATGTTATATAAGCCGA 60.105 44.000 0.00 0.00 0.00 5.54
2578 2596 5.109903 GCCTCTGGTATGTTATATAAGCCG 58.890 45.833 0.00 0.00 0.00 5.52
2579 2597 5.109903 CGCCTCTGGTATGTTATATAAGCC 58.890 45.833 0.00 0.00 0.00 4.35
2580 2598 5.721232 ACGCCTCTGGTATGTTATATAAGC 58.279 41.667 0.00 0.00 0.00 3.09
2581 2599 7.338703 TCCTACGCCTCTGGTATGTTATATAAG 59.661 40.741 0.00 0.00 0.00 1.73
2582 2600 7.177184 TCCTACGCCTCTGGTATGTTATATAA 58.823 38.462 0.00 0.00 0.00 0.98
2583 2601 6.724351 TCCTACGCCTCTGGTATGTTATATA 58.276 40.000 0.00 0.00 0.00 0.86
2584 2602 5.577100 TCCTACGCCTCTGGTATGTTATAT 58.423 41.667 0.00 0.00 0.00 0.86
2585 2603 4.989277 TCCTACGCCTCTGGTATGTTATA 58.011 43.478 0.00 0.00 0.00 0.98
2586 2604 3.840991 TCCTACGCCTCTGGTATGTTAT 58.159 45.455 0.00 0.00 0.00 1.89
2587 2605 3.301794 TCCTACGCCTCTGGTATGTTA 57.698 47.619 0.00 0.00 0.00 2.41
2588 2606 2.154567 TCCTACGCCTCTGGTATGTT 57.845 50.000 0.00 0.00 0.00 2.71
2589 2607 2.383442 ATCCTACGCCTCTGGTATGT 57.617 50.000 0.00 0.00 0.00 2.29
2590 2608 3.572682 TGTTATCCTACGCCTCTGGTATG 59.427 47.826 0.00 0.00 0.00 2.39
2591 2609 3.840991 TGTTATCCTACGCCTCTGGTAT 58.159 45.455 0.00 0.00 0.00 2.73
2592 2610 3.301794 TGTTATCCTACGCCTCTGGTA 57.698 47.619 0.00 0.00 0.00 3.25
2593 2611 2.154567 TGTTATCCTACGCCTCTGGT 57.845 50.000 0.00 0.00 0.00 4.00
2594 2612 2.693591 TCTTGTTATCCTACGCCTCTGG 59.306 50.000 0.00 0.00 0.00 3.86
2595 2613 3.381908 ACTCTTGTTATCCTACGCCTCTG 59.618 47.826 0.00 0.00 0.00 3.35
2596 2614 3.633065 GACTCTTGTTATCCTACGCCTCT 59.367 47.826 0.00 0.00 0.00 3.69
2597 2615 3.243468 GGACTCTTGTTATCCTACGCCTC 60.243 52.174 0.00 0.00 0.00 4.70
2598 2616 2.694109 GGACTCTTGTTATCCTACGCCT 59.306 50.000 0.00 0.00 0.00 5.52
2599 2617 2.694109 AGGACTCTTGTTATCCTACGCC 59.306 50.000 0.00 0.00 41.22 5.68
2600 2618 4.579753 ACTAGGACTCTTGTTATCCTACGC 59.420 45.833 0.00 0.00 42.92 4.42
2601 2619 5.050227 CGACTAGGACTCTTGTTATCCTACG 60.050 48.000 0.00 0.00 42.92 3.51
2602 2620 6.054295 TCGACTAGGACTCTTGTTATCCTAC 58.946 44.000 0.00 0.00 42.92 3.18
2603 2621 6.244552 TCGACTAGGACTCTTGTTATCCTA 57.755 41.667 0.00 0.00 42.92 2.94
2604 2622 5.113446 TCGACTAGGACTCTTGTTATCCT 57.887 43.478 0.00 0.00 45.12 3.24
2605 2623 5.831702 TTCGACTAGGACTCTTGTTATCC 57.168 43.478 0.00 0.00 0.00 2.59
2606 2624 7.229106 ACCTATTCGACTAGGACTCTTGTTATC 59.771 40.741 29.67 0.00 40.76 1.75
2607 2625 7.061688 ACCTATTCGACTAGGACTCTTGTTAT 58.938 38.462 29.67 5.79 40.76 1.89
2608 2626 6.421485 ACCTATTCGACTAGGACTCTTGTTA 58.579 40.000 29.67 0.00 40.76 2.41
2609 2627 5.262804 ACCTATTCGACTAGGACTCTTGTT 58.737 41.667 29.67 7.09 40.76 2.83
2610 2628 4.857679 ACCTATTCGACTAGGACTCTTGT 58.142 43.478 29.67 7.75 40.76 3.16
2611 2629 5.427036 GACCTATTCGACTAGGACTCTTG 57.573 47.826 29.67 7.04 40.76 3.02
2625 2643 1.957877 CTCCTCTCCACCGACCTATTC 59.042 57.143 0.00 0.00 0.00 1.75
2626 2644 1.288335 ACTCCTCTCCACCGACCTATT 59.712 52.381 0.00 0.00 0.00 1.73
2627 2645 0.927767 ACTCCTCTCCACCGACCTAT 59.072 55.000 0.00 0.00 0.00 2.57
2628 2646 0.255318 GACTCCTCTCCACCGACCTA 59.745 60.000 0.00 0.00 0.00 3.08
2629 2647 1.000646 GACTCCTCTCCACCGACCT 60.001 63.158 0.00 0.00 0.00 3.85
2630 2648 3.605895 GACTCCTCTCCACCGACC 58.394 66.667 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.