Multiple sequence alignment - TraesCS4D01G158300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G158300 chr4D 100.000 2333 0 0 1 2333 220914142 220916474 0.000000e+00 4309.0
1 TraesCS4D01G158300 chr4D 85.600 250 26 10 1889 2131 461224578 461224824 1.070000e-63 254.0
2 TraesCS4D01G158300 chr4D 93.529 170 9 2 1890 2058 462624405 462624573 3.850000e-63 252.0
3 TraesCS4D01G158300 chr6B 91.323 1164 70 14 750 1888 221851750 221852907 0.000000e+00 1561.0
4 TraesCS4D01G158300 chr6B 91.058 1163 74 13 750 1888 221488779 221489935 0.000000e+00 1544.0
5 TraesCS4D01G158300 chr6B 91.946 447 19 10 1890 2333 9937257 9937689 5.510000e-171 610.0
6 TraesCS4D01G158300 chr6B 92.941 425 20 7 323 739 221485437 221485859 5.510000e-171 610.0
7 TraesCS4D01G158300 chr6B 92.925 424 20 6 323 739 221848419 221848839 1.980000e-170 608.0
8 TraesCS4D01G158300 chr6B 94.977 219 10 1 104 322 221485269 221485486 2.220000e-90 342.0
9 TraesCS4D01G158300 chr6B 92.825 223 14 2 101 322 221848247 221848468 2.890000e-84 322.0
10 TraesCS4D01G158300 chr6B 82.558 258 35 8 826 1083 217929721 217929968 3.900000e-53 219.0
11 TraesCS4D01G158300 chr5B 91.294 804 54 5 750 1544 240337650 240338446 0.000000e+00 1083.0
12 TraesCS4D01G158300 chr5B 94.154 325 17 2 103 426 240326996 240327319 5.790000e-136 494.0
13 TraesCS4D01G158300 chr5B 87.500 368 21 4 1546 1888 240338483 240338850 3.610000e-108 401.0
14 TraesCS4D01G158300 chr5B 95.045 222 11 0 518 739 240328586 240328807 1.330000e-92 350.0
15 TraesCS4D01G158300 chr5B 89.328 253 16 3 1888 2130 43804500 43804249 8.100000e-80 307.0
16 TraesCS4D01G158300 chr5B 92.199 141 10 1 388 527 240327438 240327578 5.090000e-47 198.0
17 TraesCS4D01G158300 chr1B 89.925 804 52 5 750 1544 338039883 338040666 0.000000e+00 1009.0
18 TraesCS4D01G158300 chr1B 94.236 399 21 2 342 739 338036510 338036907 1.980000e-170 608.0
19 TraesCS4D01G158300 chr1B 88.043 368 19 10 1546 1888 338040703 338041070 1.670000e-111 412.0
20 TraesCS4D01G158300 chr1B 92.481 266 16 3 163 426 338036212 338036475 6.090000e-101 377.0
21 TraesCS4D01G158300 chr3A 92.417 633 41 2 892 1522 499239983 499240610 0.000000e+00 896.0
22 TraesCS4D01G158300 chr3A 91.358 648 40 10 100 739 499233262 499233901 0.000000e+00 872.0
23 TraesCS4D01G158300 chr3A 83.486 545 75 9 956 1495 347909103 347908569 5.790000e-136 494.0
24 TraesCS4D01G158300 chr3A 87.738 367 19 14 1546 1888 499240943 499241307 2.790000e-109 405.0
25 TraesCS4D01G158300 chr3A 78.097 662 91 26 97 739 347937770 347937144 1.020000e-98 370.0
26 TraesCS4D01G158300 chr7D 96.629 445 13 2 1889 2333 244776025 244776467 0.000000e+00 737.0
27 TraesCS4D01G158300 chr7D 80.211 662 70 26 104 739 439120356 439119730 7.650000e-120 440.0
28 TraesCS4D01G158300 chr2D 96.629 445 13 2 1890 2333 35976572 35976129 0.000000e+00 737.0
29 TraesCS4D01G158300 chr5D 95.946 444 16 2 1891 2333 69534521 69534079 0.000000e+00 719.0
30 TraesCS4D01G158300 chr5D 95.740 446 17 2 1887 2331 514423747 514423303 0.000000e+00 717.0
31 TraesCS4D01G158300 chr5D 79.054 296 42 15 752 1041 80799514 80799795 3.960000e-43 185.0
32 TraesCS4D01G158300 chr3D 81.797 879 101 28 750 1612 208027221 208026386 0.000000e+00 682.0
33 TraesCS4D01G158300 chr3D 81.456 879 106 27 750 1613 203682871 203683707 0.000000e+00 667.0
34 TraesCS4D01G158300 chr3D 80.303 660 73 30 104 739 194865293 194864667 1.640000e-121 446.0
35 TraesCS4D01G158300 chr3D 79.789 663 72 26 103 739 203678198 203678824 2.140000e-115 425.0
36 TraesCS4D01G158300 chr3D 77.548 677 127 16 752 1411 338739241 338739909 3.640000e-103 385.0
37 TraesCS4D01G158300 chr3B 91.314 449 31 8 1889 2333 802309357 802308913 7.130000e-170 606.0
38 TraesCS4D01G158300 chr3B 93.304 224 12 3 2060 2283 73031482 73031702 6.220000e-86 327.0
39 TraesCS4D01G158300 chr6D 77.548 677 123 23 752 1411 173897874 173897210 4.700000e-102 381.0
40 TraesCS4D01G158300 chr6D 79.470 302 41 15 752 1047 135216109 135215823 6.580000e-46 195.0
41 TraesCS4D01G158300 chr1A 92.982 228 13 3 2060 2286 444168874 444168649 1.730000e-86 329.0
42 TraesCS4D01G158300 chr1A 86.567 67 9 0 1 67 556602666 556602732 8.940000e-10 75.0
43 TraesCS4D01G158300 chr4A 92.511 227 14 2 2060 2286 36004029 36003806 2.890000e-84 322.0
44 TraesCS4D01G158300 chr4B 100.000 50 0 0 2284 2333 223392050 223392099 2.470000e-15 93.5
45 TraesCS4D01G158300 chr2A 98.000 50 1 0 2284 2333 281673508 281673459 1.150000e-13 87.9
46 TraesCS4D01G158300 chr2A 94.545 55 2 1 2279 2333 281679134 281679081 1.490000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G158300 chr4D 220914142 220916474 2332 False 4309.000000 4309 100.000000 1 2333 1 chr4D.!!$F1 2332
1 TraesCS4D01G158300 chr6B 221485269 221489935 4666 False 832.000000 1544 92.992000 104 1888 3 chr6B.!!$F3 1784
2 TraesCS4D01G158300 chr6B 221848247 221852907 4660 False 830.333333 1561 92.357667 101 1888 3 chr6B.!!$F4 1787
3 TraesCS4D01G158300 chr5B 240337650 240338850 1200 False 742.000000 1083 89.397000 750 1888 2 chr5B.!!$F2 1138
4 TraesCS4D01G158300 chr5B 240326996 240328807 1811 False 347.333333 494 93.799333 103 739 3 chr5B.!!$F1 636
5 TraesCS4D01G158300 chr1B 338036212 338041070 4858 False 601.500000 1009 91.171250 163 1888 4 chr1B.!!$F1 1725
6 TraesCS4D01G158300 chr3A 499233262 499233901 639 False 872.000000 872 91.358000 100 739 1 chr3A.!!$F1 639
7 TraesCS4D01G158300 chr3A 499239983 499241307 1324 False 650.500000 896 90.077500 892 1888 2 chr3A.!!$F2 996
8 TraesCS4D01G158300 chr3A 347908569 347909103 534 True 494.000000 494 83.486000 956 1495 1 chr3A.!!$R1 539
9 TraesCS4D01G158300 chr3A 347937144 347937770 626 True 370.000000 370 78.097000 97 739 1 chr3A.!!$R2 642
10 TraesCS4D01G158300 chr7D 439119730 439120356 626 True 440.000000 440 80.211000 104 739 1 chr7D.!!$R1 635
11 TraesCS4D01G158300 chr3D 208026386 208027221 835 True 682.000000 682 81.797000 750 1612 1 chr3D.!!$R2 862
12 TraesCS4D01G158300 chr3D 203682871 203683707 836 False 667.000000 667 81.456000 750 1613 1 chr3D.!!$F2 863
13 TraesCS4D01G158300 chr3D 194864667 194865293 626 True 446.000000 446 80.303000 104 739 1 chr3D.!!$R1 635
14 TraesCS4D01G158300 chr3D 203678198 203678824 626 False 425.000000 425 79.789000 103 739 1 chr3D.!!$F1 636
15 TraesCS4D01G158300 chr3D 338739241 338739909 668 False 385.000000 385 77.548000 752 1411 1 chr3D.!!$F3 659
16 TraesCS4D01G158300 chr6D 173897210 173897874 664 True 381.000000 381 77.548000 752 1411 1 chr6D.!!$R2 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 5050 0.035439 CCGTTGCAAGTCCCTGGTAT 60.035 55.0 0.0 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 6546 0.113776 ACCTGGAACGGAGACTACCA 59.886 55.0 0.0 0.0 36.31 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.695429 TGCAAAGTATTTCATTATTGCACCA 58.305 32.000 6.87 0.00 45.61 4.17
51 52 7.157347 TGCAAAGTATTTCATTATTGCACCAA 58.843 30.769 6.87 0.00 45.61 3.67
52 53 7.658982 TGCAAAGTATTTCATTATTGCACCAAA 59.341 29.630 6.87 0.00 45.61 3.28
53 54 7.956943 GCAAAGTATTTCATTATTGCACCAAAC 59.043 33.333 3.64 0.00 41.93 2.93
54 55 9.206870 CAAAGTATTTCATTATTGCACCAAACT 57.793 29.630 0.00 0.00 35.03 2.66
55 56 9.777297 AAAGTATTTCATTATTGCACCAAACTT 57.223 25.926 0.00 0.00 27.08 2.66
56 57 9.777297 AAGTATTTCATTATTGCACCAAACTTT 57.223 25.926 0.00 0.00 0.00 2.66
57 58 9.777297 AGTATTTCATTATTGCACCAAACTTTT 57.223 25.926 0.00 0.00 0.00 2.27
60 61 7.856145 TTCATTATTGCACCAAACTTTTTGT 57.144 28.000 0.00 0.00 0.00 2.83
61 62 7.244166 TCATTATTGCACCAAACTTTTTGTG 57.756 32.000 2.33 2.33 37.01 3.33
62 63 6.259608 TCATTATTGCACCAAACTTTTTGTGG 59.740 34.615 7.74 0.00 35.18 4.17
63 64 3.409026 TTGCACCAAACTTTTTGTGGT 57.591 38.095 7.74 0.00 46.72 4.16
64 65 4.537135 TTGCACCAAACTTTTTGTGGTA 57.463 36.364 7.74 0.00 43.90 3.25
65 66 4.116747 TGCACCAAACTTTTTGTGGTAG 57.883 40.909 7.74 0.00 43.90 3.18
66 67 3.511934 TGCACCAAACTTTTTGTGGTAGT 59.488 39.130 7.74 0.00 43.90 2.73
67 68 3.862845 GCACCAAACTTTTTGTGGTAGTG 59.137 43.478 7.74 4.10 43.90 2.74
68 69 4.429108 CACCAAACTTTTTGTGGTAGTGG 58.571 43.478 0.00 0.00 43.90 4.00
69 70 4.158764 CACCAAACTTTTTGTGGTAGTGGA 59.841 41.667 0.00 0.00 43.90 4.02
70 71 4.158949 ACCAAACTTTTTGTGGTAGTGGAC 59.841 41.667 0.00 0.00 43.90 4.02
71 72 4.401202 CCAAACTTTTTGTGGTAGTGGACT 59.599 41.667 0.00 0.00 0.00 3.85
72 73 5.591067 CCAAACTTTTTGTGGTAGTGGACTA 59.409 40.000 0.00 0.00 0.00 2.59
73 74 6.095720 CCAAACTTTTTGTGGTAGTGGACTAA 59.904 38.462 0.00 0.00 0.00 2.24
74 75 7.363094 CCAAACTTTTTGTGGTAGTGGACTAAA 60.363 37.037 0.00 0.00 0.00 1.85
75 76 6.937436 ACTTTTTGTGGTAGTGGACTAAAG 57.063 37.500 0.00 0.00 0.00 1.85
76 77 6.420638 ACTTTTTGTGGTAGTGGACTAAAGT 58.579 36.000 0.00 0.00 0.00 2.66
77 78 6.317893 ACTTTTTGTGGTAGTGGACTAAAGTG 59.682 38.462 0.00 0.00 0.00 3.16
78 79 5.362105 TTTGTGGTAGTGGACTAAAGTGT 57.638 39.130 0.00 0.00 0.00 3.55
79 80 6.482898 TTTGTGGTAGTGGACTAAAGTGTA 57.517 37.500 0.00 0.00 0.00 2.90
80 81 6.482898 TTGTGGTAGTGGACTAAAGTGTAA 57.517 37.500 0.00 0.00 0.00 2.41
81 82 5.846203 TGTGGTAGTGGACTAAAGTGTAAC 58.154 41.667 0.00 0.00 0.00 2.50
82 83 5.363292 TGTGGTAGTGGACTAAAGTGTAACA 59.637 40.000 0.00 0.00 41.43 2.41
83 84 6.127111 TGTGGTAGTGGACTAAAGTGTAACAA 60.127 38.462 0.00 0.00 41.43 2.83
84 85 6.762661 GTGGTAGTGGACTAAAGTGTAACAAA 59.237 38.462 0.00 0.00 41.43 2.83
85 86 6.762661 TGGTAGTGGACTAAAGTGTAACAAAC 59.237 38.462 0.00 0.00 41.43 2.93
86 87 6.988580 GGTAGTGGACTAAAGTGTAACAAACT 59.011 38.462 0.00 0.00 41.43 2.66
87 88 7.496920 GGTAGTGGACTAAAGTGTAACAAACTT 59.503 37.037 0.00 0.00 41.43 2.66
88 89 9.533253 GTAGTGGACTAAAGTGTAACAAACTTA 57.467 33.333 0.00 0.00 41.43 2.24
89 90 8.658499 AGTGGACTAAAGTGTAACAAACTTAG 57.342 34.615 0.00 0.00 41.43 2.18
90 91 7.713942 AGTGGACTAAAGTGTAACAAACTTAGG 59.286 37.037 0.00 0.00 41.43 2.69
91 92 7.712205 GTGGACTAAAGTGTAACAAACTTAGGA 59.288 37.037 0.00 0.00 41.43 2.94
92 93 7.929785 TGGACTAAAGTGTAACAAACTTAGGAG 59.070 37.037 0.00 0.00 41.43 3.69
93 94 7.930325 GGACTAAAGTGTAACAAACTTAGGAGT 59.070 37.037 0.00 0.00 41.43 3.85
95 96 9.106070 ACTAAAGTGTAACAAACTTAGGAGTTG 57.894 33.333 0.00 0.00 45.18 3.16
96 97 9.321562 CTAAAGTGTAACAAACTTAGGAGTTGA 57.678 33.333 0.00 0.00 45.18 3.18
97 98 8.570068 AAAGTGTAACAAACTTAGGAGTTGAA 57.430 30.769 0.00 0.00 45.18 2.69
98 99 8.747538 AAGTGTAACAAACTTAGGAGTTGAAT 57.252 30.769 0.00 0.00 45.18 2.57
99 100 9.841295 AAGTGTAACAAACTTAGGAGTTGAATA 57.159 29.630 0.00 0.00 45.18 1.75
153 156 8.009622 ACGGGTTAACCAGAAAAAGAAATTAA 57.990 30.769 28.52 0.00 40.22 1.40
379 508 1.029408 AAAGCCGCCACGCATCAATA 61.029 50.000 0.00 0.00 0.00 1.90
433 613 4.709397 TGCAAAGAAAGAAAAGACCCAAGA 59.291 37.500 0.00 0.00 0.00 3.02
470 650 3.744719 CGCCGAGTTCGAGGTGGA 61.745 66.667 2.59 0.00 43.02 4.02
547 1750 3.030291 CCAAGCCATACATGCCCTTTTA 58.970 45.455 0.00 0.00 0.00 1.52
599 1809 5.966636 TCTCACGATCAATTTTACCATCG 57.033 39.130 0.00 0.00 43.06 3.84
712 1924 2.627699 CCTCCAGCTTTTTAACTTGCCA 59.372 45.455 0.00 0.00 0.00 4.92
747 1959 8.399768 CTGATGTAGCTATTATTACGGACATG 57.600 38.462 0.00 0.00 0.00 3.21
748 1960 6.811665 TGATGTAGCTATTATTACGGACATGC 59.188 38.462 0.00 0.00 0.00 4.06
819 5046 2.594303 TGCCGTTGCAAGTCCCTG 60.594 61.111 0.00 0.00 46.66 4.45
823 5050 0.035439 CCGTTGCAAGTCCCTGGTAT 60.035 55.000 0.00 0.00 0.00 2.73
856 5083 7.312956 AGTGGAGGGGGCATAAATAAATTTAT 58.687 34.615 4.81 4.81 42.10 1.40
945 5177 9.579932 AGACAGGATAAGAAACAAGAAAAAGAT 57.420 29.630 0.00 0.00 0.00 2.40
1022 5257 0.976641 AGTCACCGAATTCAGGCTGA 59.023 50.000 14.43 14.43 0.00 4.26
1031 5266 0.036952 ATTCAGGCTGACACTGTCGG 60.037 55.000 18.55 13.02 41.44 4.79
1053 5288 2.376109 GATGAAGACGACCTACCAGGA 58.624 52.381 0.00 0.00 37.67 3.86
1182 5419 0.460311 CCTCCAAGGACGCTAACGAT 59.540 55.000 0.00 0.00 44.16 3.73
1192 5429 1.333115 CGCTAACGATGACGACACAA 58.667 50.000 0.00 0.00 43.93 3.33
1201 5438 4.108336 CGATGACGACACAATCAAGATCT 58.892 43.478 0.00 0.00 42.66 2.75
1227 5464 2.829914 GCATCCTCCATGGCGCAA 60.830 61.111 10.83 0.00 35.08 4.85
1317 5565 2.074967 CCAAACTAGGCTCACCCCA 58.925 57.895 0.00 0.00 36.11 4.96
1336 5584 2.359850 GGTCGCACCAATGAGCCA 60.360 61.111 1.01 0.00 38.42 4.75
1369 5617 1.601171 GTGCAGGTGAGGATGAGCT 59.399 57.895 0.00 0.00 0.00 4.09
1370 5618 0.035630 GTGCAGGTGAGGATGAGCTT 60.036 55.000 0.00 0.00 0.00 3.74
1377 5625 1.002430 GTGAGGATGAGCTTGGTCACA 59.998 52.381 4.58 0.00 35.45 3.58
1417 5665 4.770010 GGAATTGAGGTGTTGTTGGGAATA 59.230 41.667 0.00 0.00 0.00 1.75
1503 5766 6.190954 AGTCAAGAGCTACGTTTTTGTTTT 57.809 33.333 0.00 0.00 0.00 2.43
1557 6160 3.015516 AAAAACGATCCTGTGCGGT 57.984 47.368 0.00 0.00 0.00 5.68
1742 6373 8.267894 ACTCCTATAATGCATATTACATCACCC 58.732 37.037 0.00 0.00 31.90 4.61
1889 6523 4.090588 CGAGGCGCCCCCAAAGTA 62.091 66.667 26.15 0.00 35.39 2.24
1890 6524 2.595655 GAGGCGCCCCCAAAGTAT 59.404 61.111 26.15 0.00 35.39 2.12
1891 6525 1.526225 GAGGCGCCCCCAAAGTATC 60.526 63.158 26.15 6.83 35.39 2.24
1892 6526 1.984288 GAGGCGCCCCCAAAGTATCT 61.984 60.000 26.15 0.00 35.39 1.98
1893 6527 1.526225 GGCGCCCCCAAAGTATCTC 60.526 63.158 18.11 0.00 0.00 2.75
1894 6528 1.527370 GCGCCCCCAAAGTATCTCT 59.473 57.895 0.00 0.00 0.00 3.10
1895 6529 0.815615 GCGCCCCCAAAGTATCTCTG 60.816 60.000 0.00 0.00 0.00 3.35
1896 6530 0.815615 CGCCCCCAAAGTATCTCTGC 60.816 60.000 0.00 0.00 0.00 4.26
1897 6531 0.548510 GCCCCCAAAGTATCTCTGCT 59.451 55.000 0.00 0.00 0.00 4.24
1898 6532 1.475930 GCCCCCAAAGTATCTCTGCTC 60.476 57.143 0.00 0.00 0.00 4.26
1899 6533 1.141858 CCCCCAAAGTATCTCTGCTCC 59.858 57.143 0.00 0.00 0.00 4.70
1900 6534 2.122768 CCCCAAAGTATCTCTGCTCCT 58.877 52.381 0.00 0.00 0.00 3.69
1901 6535 3.309296 CCCCAAAGTATCTCTGCTCCTA 58.691 50.000 0.00 0.00 0.00 2.94
1902 6536 3.711704 CCCCAAAGTATCTCTGCTCCTAA 59.288 47.826 0.00 0.00 0.00 2.69
1903 6537 4.349342 CCCCAAAGTATCTCTGCTCCTAAT 59.651 45.833 0.00 0.00 0.00 1.73
1904 6538 5.303971 CCCAAAGTATCTCTGCTCCTAATG 58.696 45.833 0.00 0.00 0.00 1.90
1905 6539 5.163258 CCCAAAGTATCTCTGCTCCTAATGT 60.163 44.000 0.00 0.00 0.00 2.71
1906 6540 5.988561 CCAAAGTATCTCTGCTCCTAATGTC 59.011 44.000 0.00 0.00 0.00 3.06
1907 6541 6.183360 CCAAAGTATCTCTGCTCCTAATGTCT 60.183 42.308 0.00 0.00 0.00 3.41
1908 6542 6.648879 AAGTATCTCTGCTCCTAATGTCTC 57.351 41.667 0.00 0.00 0.00 3.36
1909 6543 5.700183 AGTATCTCTGCTCCTAATGTCTCA 58.300 41.667 0.00 0.00 0.00 3.27
1910 6544 5.769662 AGTATCTCTGCTCCTAATGTCTCAG 59.230 44.000 0.00 0.00 0.00 3.35
1911 6545 3.974719 TCTCTGCTCCTAATGTCTCAGT 58.025 45.455 0.00 0.00 0.00 3.41
1912 6546 4.348486 TCTCTGCTCCTAATGTCTCAGTT 58.652 43.478 0.00 0.00 0.00 3.16
1913 6547 4.159321 TCTCTGCTCCTAATGTCTCAGTTG 59.841 45.833 0.00 0.00 0.00 3.16
1914 6548 3.196469 TCTGCTCCTAATGTCTCAGTTGG 59.804 47.826 0.00 0.00 0.00 3.77
1915 6549 2.906389 TGCTCCTAATGTCTCAGTTGGT 59.094 45.455 0.00 0.00 0.00 3.67
1916 6550 4.093743 TGCTCCTAATGTCTCAGTTGGTA 58.906 43.478 0.00 0.00 0.00 3.25
1917 6551 4.160439 TGCTCCTAATGTCTCAGTTGGTAG 59.840 45.833 0.00 0.00 0.00 3.18
1918 6552 4.160626 GCTCCTAATGTCTCAGTTGGTAGT 59.839 45.833 0.00 0.00 0.00 2.73
1919 6553 5.680151 GCTCCTAATGTCTCAGTTGGTAGTC 60.680 48.000 0.00 0.00 0.00 2.59
1920 6554 5.580998 TCCTAATGTCTCAGTTGGTAGTCT 58.419 41.667 0.00 0.00 0.00 3.24
1921 6555 5.652891 TCCTAATGTCTCAGTTGGTAGTCTC 59.347 44.000 0.00 0.00 0.00 3.36
1922 6556 4.810191 AATGTCTCAGTTGGTAGTCTCC 57.190 45.455 0.00 0.00 0.00 3.71
1923 6557 2.160205 TGTCTCAGTTGGTAGTCTCCG 58.840 52.381 0.00 0.00 0.00 4.63
1924 6558 2.161030 GTCTCAGTTGGTAGTCTCCGT 58.839 52.381 0.00 0.00 0.00 4.69
1925 6559 2.557490 GTCTCAGTTGGTAGTCTCCGTT 59.443 50.000 0.00 0.00 0.00 4.44
1926 6560 2.818432 TCTCAGTTGGTAGTCTCCGTTC 59.182 50.000 0.00 0.00 0.00 3.95
1927 6561 1.891150 TCAGTTGGTAGTCTCCGTTCC 59.109 52.381 0.00 0.00 0.00 3.62
1928 6562 1.616865 CAGTTGGTAGTCTCCGTTCCA 59.383 52.381 0.00 0.00 0.00 3.53
1929 6563 1.893801 AGTTGGTAGTCTCCGTTCCAG 59.106 52.381 0.00 0.00 0.00 3.86
1930 6564 1.067071 GTTGGTAGTCTCCGTTCCAGG 60.067 57.143 0.00 0.00 0.00 4.45
1931 6565 0.113776 TGGTAGTCTCCGTTCCAGGT 59.886 55.000 0.00 0.00 0.00 4.00
1932 6566 1.264295 GGTAGTCTCCGTTCCAGGTT 58.736 55.000 0.00 0.00 0.00 3.50
1933 6567 1.622312 GGTAGTCTCCGTTCCAGGTTT 59.378 52.381 0.00 0.00 0.00 3.27
1934 6568 2.827921 GGTAGTCTCCGTTCCAGGTTTA 59.172 50.000 0.00 0.00 0.00 2.01
1935 6569 3.450096 GGTAGTCTCCGTTCCAGGTTTAT 59.550 47.826 0.00 0.00 0.00 1.40
1936 6570 4.081254 GGTAGTCTCCGTTCCAGGTTTATT 60.081 45.833 0.00 0.00 0.00 1.40
1937 6571 4.635699 AGTCTCCGTTCCAGGTTTATTT 57.364 40.909 0.00 0.00 0.00 1.40
1938 6572 4.981812 AGTCTCCGTTCCAGGTTTATTTT 58.018 39.130 0.00 0.00 0.00 1.82
1939 6573 5.001874 AGTCTCCGTTCCAGGTTTATTTTC 58.998 41.667 0.00 0.00 0.00 2.29
1940 6574 3.998341 TCTCCGTTCCAGGTTTATTTTCG 59.002 43.478 0.00 0.00 0.00 3.46
1941 6575 3.742385 TCCGTTCCAGGTTTATTTTCGT 58.258 40.909 0.00 0.00 0.00 3.85
1942 6576 3.747529 TCCGTTCCAGGTTTATTTTCGTC 59.252 43.478 0.00 0.00 0.00 4.20
1943 6577 3.120095 CCGTTCCAGGTTTATTTTCGTCC 60.120 47.826 0.00 0.00 0.00 4.79
1944 6578 3.120095 CGTTCCAGGTTTATTTTCGTCCC 60.120 47.826 0.00 0.00 0.00 4.46
1945 6579 3.791953 TCCAGGTTTATTTTCGTCCCA 57.208 42.857 0.00 0.00 0.00 4.37
1946 6580 3.414269 TCCAGGTTTATTTTCGTCCCAC 58.586 45.455 0.00 0.00 0.00 4.61
1947 6581 2.490509 CCAGGTTTATTTTCGTCCCACC 59.509 50.000 0.00 0.00 0.00 4.61
1948 6582 3.418047 CAGGTTTATTTTCGTCCCACCT 58.582 45.455 0.00 0.00 33.24 4.00
1949 6583 3.439129 CAGGTTTATTTTCGTCCCACCTC 59.561 47.826 0.00 0.00 30.43 3.85
1950 6584 3.073356 AGGTTTATTTTCGTCCCACCTCA 59.927 43.478 0.00 0.00 0.00 3.86
1951 6585 3.189910 GGTTTATTTTCGTCCCACCTCAC 59.810 47.826 0.00 0.00 0.00 3.51
1952 6586 3.773418 TTATTTTCGTCCCACCTCACA 57.227 42.857 0.00 0.00 0.00 3.58
1953 6587 1.892209 ATTTTCGTCCCACCTCACAC 58.108 50.000 0.00 0.00 0.00 3.82
1954 6588 0.531090 TTTTCGTCCCACCTCACACG 60.531 55.000 0.00 0.00 0.00 4.49
1955 6589 2.372040 TTTCGTCCCACCTCACACGG 62.372 60.000 0.00 0.00 33.02 4.94
1956 6590 3.612681 CGTCCCACCTCACACGGT 61.613 66.667 0.00 0.00 37.93 4.83
1957 6591 2.826702 GTCCCACCTCACACGGTT 59.173 61.111 0.00 0.00 34.29 4.44
1958 6592 1.147600 GTCCCACCTCACACGGTTT 59.852 57.895 0.00 0.00 34.29 3.27
1959 6593 0.464916 GTCCCACCTCACACGGTTTT 60.465 55.000 0.00 0.00 34.29 2.43
1960 6594 0.256464 TCCCACCTCACACGGTTTTT 59.744 50.000 0.00 0.00 34.29 1.94
1984 6618 8.943594 TTTTTGTACATATTTTGGTACCTCCT 57.056 30.769 14.36 0.00 39.23 3.69
1985 6619 8.570068 TTTTGTACATATTTTGGTACCTCCTC 57.430 34.615 14.36 0.00 39.23 3.71
1986 6620 6.243216 TGTACATATTTTGGTACCTCCTCC 57.757 41.667 14.36 0.00 39.23 4.30
1987 6621 4.790718 ACATATTTTGGTACCTCCTCCC 57.209 45.455 14.36 0.00 37.07 4.30
1988 6622 4.116113 ACATATTTTGGTACCTCCTCCCA 58.884 43.478 14.36 0.00 37.07 4.37
1989 6623 4.079958 ACATATTTTGGTACCTCCTCCCAC 60.080 45.833 14.36 0.00 37.07 4.61
1990 6624 1.069775 TTTTGGTACCTCCTCCCACC 58.930 55.000 14.36 0.00 37.07 4.61
1991 6625 0.195096 TTTGGTACCTCCTCCCACCT 59.805 55.000 14.36 0.00 37.07 4.00
1992 6626 0.252558 TTGGTACCTCCTCCCACCTC 60.253 60.000 14.36 0.00 37.07 3.85
1993 6627 1.390926 GGTACCTCCTCCCACCTCA 59.609 63.158 4.06 0.00 0.00 3.86
1994 6628 0.976590 GGTACCTCCTCCCACCTCAC 60.977 65.000 4.06 0.00 0.00 3.51
1995 6629 1.000019 TACCTCCTCCCACCTCACG 60.000 63.158 0.00 0.00 0.00 4.35
1996 6630 3.775654 CCTCCTCCCACCTCACGC 61.776 72.222 0.00 0.00 0.00 5.34
1997 6631 2.681778 CTCCTCCCACCTCACGCT 60.682 66.667 0.00 0.00 0.00 5.07
1998 6632 2.997315 TCCTCCCACCTCACGCTG 60.997 66.667 0.00 0.00 0.00 5.18
1999 6633 2.997315 CCTCCCACCTCACGCTGA 60.997 66.667 0.00 0.00 0.00 4.26
2000 6634 2.262915 CTCCCACCTCACGCTGAC 59.737 66.667 0.00 0.00 0.00 3.51
2001 6635 3.302347 CTCCCACCTCACGCTGACC 62.302 68.421 0.00 0.00 0.00 4.02
2002 6636 4.394712 CCCACCTCACGCTGACCC 62.395 72.222 0.00 0.00 0.00 4.46
2003 6637 4.742201 CCACCTCACGCTGACCCG 62.742 72.222 0.00 0.00 0.00 5.28
2009 6643 4.063967 CACGCTGACCCGCCACTA 62.064 66.667 0.00 0.00 0.00 2.74
2010 6644 3.760035 ACGCTGACCCGCCACTAG 61.760 66.667 0.00 0.00 0.00 2.57
2012 6646 4.840005 GCTGACCCGCCACTAGCC 62.840 72.222 0.00 0.00 38.78 3.93
2013 6647 4.514577 CTGACCCGCCACTAGCCG 62.515 72.222 0.00 0.00 38.78 5.52
2015 6649 3.766691 GACCCGCCACTAGCCGAA 61.767 66.667 0.00 0.00 38.78 4.30
2016 6650 3.305177 GACCCGCCACTAGCCGAAA 62.305 63.158 0.00 0.00 38.78 3.46
2017 6651 2.046700 CCCGCCACTAGCCGAAAA 60.047 61.111 0.00 0.00 38.78 2.29
2018 6652 1.673009 CCCGCCACTAGCCGAAAAA 60.673 57.895 0.00 0.00 38.78 1.94
2034 6668 1.869774 AAAAACCACGTACCGAGTCC 58.130 50.000 0.00 0.00 0.00 3.85
2035 6669 1.043022 AAAACCACGTACCGAGTCCT 58.957 50.000 0.00 0.00 0.00 3.85
2036 6670 0.600057 AAACCACGTACCGAGTCCTC 59.400 55.000 0.00 0.00 0.00 3.71
2037 6671 1.246737 AACCACGTACCGAGTCCTCC 61.247 60.000 0.00 0.00 0.00 4.30
2038 6672 1.676635 CCACGTACCGAGTCCTCCA 60.677 63.158 0.00 0.00 0.00 3.86
2039 6673 1.505353 CACGTACCGAGTCCTCCAC 59.495 63.158 0.00 0.00 0.00 4.02
2040 6674 1.676967 ACGTACCGAGTCCTCCACC 60.677 63.158 0.00 0.00 0.00 4.61
2041 6675 1.676635 CGTACCGAGTCCTCCACCA 60.677 63.158 0.00 0.00 0.00 4.17
2042 6676 1.654954 CGTACCGAGTCCTCCACCAG 61.655 65.000 0.00 0.00 0.00 4.00
2043 6677 1.681327 TACCGAGTCCTCCACCAGC 60.681 63.158 0.00 0.00 0.00 4.85
2044 6678 3.775654 CCGAGTCCTCCACCAGCC 61.776 72.222 0.00 0.00 0.00 4.85
2045 6679 3.775654 CGAGTCCTCCACCAGCCC 61.776 72.222 0.00 0.00 0.00 5.19
2046 6680 3.403558 GAGTCCTCCACCAGCCCC 61.404 72.222 0.00 0.00 0.00 5.80
2061 6695 4.821589 CCCCGCGCTCTTCAGGAC 62.822 72.222 5.56 0.00 0.00 3.85
2063 6697 4.421479 CCGCGCTCTTCAGGACGT 62.421 66.667 5.56 0.00 0.00 4.34
2064 6698 2.483745 CGCGCTCTTCAGGACGTA 59.516 61.111 5.56 0.00 0.00 3.57
2065 6699 1.583967 CGCGCTCTTCAGGACGTAG 60.584 63.158 5.56 0.00 0.00 3.51
2066 6700 1.801332 GCGCTCTTCAGGACGTAGA 59.199 57.895 0.00 0.00 0.00 2.59
2067 6701 0.170561 GCGCTCTTCAGGACGTAGAA 59.829 55.000 0.00 0.00 0.00 2.10
2068 6702 1.402456 GCGCTCTTCAGGACGTAGAAA 60.402 52.381 0.00 0.00 0.00 2.52
2069 6703 2.925306 GCGCTCTTCAGGACGTAGAAAA 60.925 50.000 0.00 0.00 0.00 2.29
2070 6704 3.314553 CGCTCTTCAGGACGTAGAAAAA 58.685 45.455 0.00 0.00 0.00 1.94
2090 6724 5.713822 AAAATCTACGACGATTAACCAGC 57.286 39.130 0.00 0.00 33.47 4.85
2091 6725 2.463553 TCTACGACGATTAACCAGCG 57.536 50.000 0.00 0.00 0.00 5.18
2092 6726 2.009051 TCTACGACGATTAACCAGCGA 58.991 47.619 0.00 0.00 0.00 4.93
2093 6727 2.615447 TCTACGACGATTAACCAGCGAT 59.385 45.455 0.00 0.00 0.00 4.58
2094 6728 3.809279 TCTACGACGATTAACCAGCGATA 59.191 43.478 0.00 0.00 0.00 2.92
2095 6729 3.425577 ACGACGATTAACCAGCGATAA 57.574 42.857 0.00 0.00 0.00 1.75
2096 6730 3.772932 ACGACGATTAACCAGCGATAAA 58.227 40.909 0.00 0.00 0.00 1.40
2097 6731 4.175516 ACGACGATTAACCAGCGATAAAA 58.824 39.130 0.00 0.00 0.00 1.52
2098 6732 4.626604 ACGACGATTAACCAGCGATAAAAA 59.373 37.500 0.00 0.00 0.00 1.94
2120 6754 5.970317 AAACCTACGAAAAATAACCAGGG 57.030 39.130 0.00 0.00 0.00 4.45
2121 6755 4.914177 ACCTACGAAAAATAACCAGGGA 57.086 40.909 0.00 0.00 0.00 4.20
2122 6756 5.245584 ACCTACGAAAAATAACCAGGGAA 57.754 39.130 0.00 0.00 0.00 3.97
2123 6757 5.633117 ACCTACGAAAAATAACCAGGGAAA 58.367 37.500 0.00 0.00 0.00 3.13
2124 6758 6.069994 ACCTACGAAAAATAACCAGGGAAAA 58.930 36.000 0.00 0.00 0.00 2.29
2125 6759 6.550481 ACCTACGAAAAATAACCAGGGAAAAA 59.450 34.615 0.00 0.00 0.00 1.94
2141 6775 4.359475 AAAAACCCCGGACGTACG 57.641 55.556 14.78 14.78 0.00 3.67
2142 6776 1.745264 AAAAACCCCGGACGTACGA 59.255 52.632 24.65 0.00 35.47 3.43
2143 6777 0.319813 AAAAACCCCGGACGTACGAG 60.320 55.000 24.65 15.40 35.47 4.18
2144 6778 2.770132 AAAACCCCGGACGTACGAGC 62.770 60.000 24.65 13.11 35.47 5.03
2147 6781 3.803082 CCCGGACGTACGAGCGAA 61.803 66.667 24.65 0.00 35.47 4.70
2148 6782 2.277120 CCGGACGTACGAGCGAAG 60.277 66.667 24.65 0.00 35.47 3.79
2149 6783 2.477845 CGGACGTACGAGCGAAGT 59.522 61.111 24.41 0.00 35.47 3.01
2150 6784 1.579626 CGGACGTACGAGCGAAGTC 60.580 63.158 24.41 6.76 35.47 3.01
2151 6785 1.579626 GGACGTACGAGCGAAGTCG 60.580 63.158 24.41 0.00 45.76 4.18
2161 6795 2.892425 CGAAGTCGCATGCCCTCC 60.892 66.667 13.15 0.00 0.00 4.30
2162 6796 2.268920 GAAGTCGCATGCCCTCCA 59.731 61.111 13.15 0.00 0.00 3.86
2163 6797 1.817099 GAAGTCGCATGCCCTCCAG 60.817 63.158 13.15 0.00 0.00 3.86
2164 6798 3.984193 AAGTCGCATGCCCTCCAGC 62.984 63.158 13.15 0.00 0.00 4.85
2168 6802 4.166888 GCATGCCCTCCAGCGAGA 62.167 66.667 6.36 0.00 38.52 4.04
2169 6803 2.586245 CATGCCCTCCAGCGAGAA 59.414 61.111 0.00 0.00 38.52 2.87
2170 6804 1.817099 CATGCCCTCCAGCGAGAAC 60.817 63.158 0.00 0.00 38.52 3.01
2171 6805 3.376935 ATGCCCTCCAGCGAGAACG 62.377 63.158 0.00 0.00 38.52 3.95
2172 6806 3.760035 GCCCTCCAGCGAGAACGA 61.760 66.667 0.00 0.00 42.66 3.85
2173 6807 2.182030 CCCTCCAGCGAGAACGAC 59.818 66.667 0.00 0.00 42.66 4.34
2174 6808 2.344203 CCCTCCAGCGAGAACGACT 61.344 63.158 0.00 0.00 42.66 4.18
2175 6809 1.137825 CCTCCAGCGAGAACGACTC 59.862 63.158 0.00 0.00 42.66 3.36
2182 6816 2.126812 GAGAACGACTCGCACGCT 60.127 61.111 0.00 0.00 35.84 5.07
2183 6817 1.134075 GAGAACGACTCGCACGCTA 59.866 57.895 0.00 0.00 35.84 4.26
2184 6818 0.858135 GAGAACGACTCGCACGCTAG 60.858 60.000 0.00 0.00 35.84 3.42
2185 6819 1.134075 GAACGACTCGCACGCTAGA 59.866 57.895 0.00 0.00 0.00 2.43
2186 6820 1.126996 GAACGACTCGCACGCTAGAC 61.127 60.000 0.00 0.00 0.00 2.59
2187 6821 1.575576 AACGACTCGCACGCTAGACT 61.576 55.000 0.00 0.00 0.00 3.24
2188 6822 1.297012 CGACTCGCACGCTAGACTC 60.297 63.158 0.00 0.00 0.00 3.36
2189 6823 1.062845 GACTCGCACGCTAGACTCC 59.937 63.158 0.00 0.00 0.00 3.85
2190 6824 2.325666 GACTCGCACGCTAGACTCCC 62.326 65.000 0.00 0.00 0.00 4.30
2191 6825 2.045242 TCGCACGCTAGACTCCCT 60.045 61.111 0.00 0.00 0.00 4.20
2192 6826 2.103143 CGCACGCTAGACTCCCTG 59.897 66.667 0.00 0.00 0.00 4.45
2193 6827 2.202810 GCACGCTAGACTCCCTGC 60.203 66.667 0.00 0.00 0.00 4.85
2194 6828 2.496817 CACGCTAGACTCCCTGCC 59.503 66.667 0.00 0.00 0.00 4.85
2195 6829 2.760385 ACGCTAGACTCCCTGCCC 60.760 66.667 0.00 0.00 0.00 5.36
2196 6830 2.443016 CGCTAGACTCCCTGCCCT 60.443 66.667 0.00 0.00 0.00 5.19
2197 6831 2.494530 CGCTAGACTCCCTGCCCTC 61.495 68.421 0.00 0.00 0.00 4.30
2198 6832 2.494530 GCTAGACTCCCTGCCCTCG 61.495 68.421 0.00 0.00 0.00 4.63
2199 6833 1.076632 CTAGACTCCCTGCCCTCGT 60.077 63.158 0.00 0.00 0.00 4.18
2200 6834 0.684805 CTAGACTCCCTGCCCTCGTT 60.685 60.000 0.00 0.00 0.00 3.85
2201 6835 0.683504 TAGACTCCCTGCCCTCGTTC 60.684 60.000 0.00 0.00 0.00 3.95
2202 6836 3.358076 GACTCCCTGCCCTCGTTCG 62.358 68.421 0.00 0.00 0.00 3.95
2203 6837 3.382832 CTCCCTGCCCTCGTTCGT 61.383 66.667 0.00 0.00 0.00 3.85
2204 6838 3.358076 CTCCCTGCCCTCGTTCGTC 62.358 68.421 0.00 0.00 0.00 4.20
2205 6839 4.796231 CCCTGCCCTCGTTCGTCG 62.796 72.222 0.00 0.00 41.41 5.12
2215 6849 2.813908 GTTCGTCGCCGCCTTCAT 60.814 61.111 0.00 0.00 0.00 2.57
2216 6850 2.508439 TTCGTCGCCGCCTTCATC 60.508 61.111 0.00 0.00 0.00 2.92
2217 6851 4.508128 TCGTCGCCGCCTTCATCC 62.508 66.667 0.00 0.00 0.00 3.51
2219 6853 4.162690 GTCGCCGCCTTCATCCCT 62.163 66.667 0.00 0.00 0.00 4.20
2220 6854 3.399181 TCGCCGCCTTCATCCCTT 61.399 61.111 0.00 0.00 0.00 3.95
2221 6855 2.897350 CGCCGCCTTCATCCCTTC 60.897 66.667 0.00 0.00 0.00 3.46
2222 6856 2.897350 GCCGCCTTCATCCCTTCG 60.897 66.667 0.00 0.00 0.00 3.79
2223 6857 2.897350 CCGCCTTCATCCCTTCGC 60.897 66.667 0.00 0.00 0.00 4.70
2224 6858 2.897350 CGCCTTCATCCCTTCGCC 60.897 66.667 0.00 0.00 0.00 5.54
2225 6859 2.592308 GCCTTCATCCCTTCGCCT 59.408 61.111 0.00 0.00 0.00 5.52
2226 6860 1.524849 GCCTTCATCCCTTCGCCTC 60.525 63.158 0.00 0.00 0.00 4.70
2227 6861 1.147153 CCTTCATCCCTTCGCCTCC 59.853 63.158 0.00 0.00 0.00 4.30
2228 6862 1.227380 CTTCATCCCTTCGCCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
2229 6863 3.385749 TTCATCCCTTCGCCTCCGC 62.386 63.158 0.00 0.00 0.00 5.54
2230 6864 4.918201 CATCCCTTCGCCTCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
2240 6874 4.918201 CCTCCGCCGCCCTTCATC 62.918 72.222 0.00 0.00 0.00 2.92
2241 6875 4.918201 CTCCGCCGCCCTTCATCC 62.918 72.222 0.00 0.00 0.00 3.51
2244 6878 4.489771 CGCCGCCCTTCATCCCTT 62.490 66.667 0.00 0.00 0.00 3.95
2245 6879 2.517166 GCCGCCCTTCATCCCTTC 60.517 66.667 0.00 0.00 0.00 3.46
2246 6880 2.203070 CCGCCCTTCATCCCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
2247 6881 2.897350 CGCCCTTCATCCCTTCGC 60.897 66.667 0.00 0.00 0.00 4.70
2248 6882 2.517166 GCCCTTCATCCCTTCGCC 60.517 66.667 0.00 0.00 0.00 5.54
2249 6883 2.203070 CCCTTCATCCCTTCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
2250 6884 2.897350 CCTTCATCCCTTCGCCGC 60.897 66.667 0.00 0.00 0.00 6.53
2251 6885 2.897350 CTTCATCCCTTCGCCGCC 60.897 66.667 0.00 0.00 0.00 6.13
2252 6886 4.830765 TTCATCCCTTCGCCGCCG 62.831 66.667 0.00 0.00 0.00 6.46
2268 6902 4.079090 CGCACTCGGTCTCACATC 57.921 61.111 0.00 0.00 0.00 3.06
2269 6903 1.212751 CGCACTCGGTCTCACATCA 59.787 57.895 0.00 0.00 0.00 3.07
2270 6904 0.388520 CGCACTCGGTCTCACATCAA 60.389 55.000 0.00 0.00 0.00 2.57
2271 6905 1.795768 GCACTCGGTCTCACATCAAA 58.204 50.000 0.00 0.00 0.00 2.69
2272 6906 1.728971 GCACTCGGTCTCACATCAAAG 59.271 52.381 0.00 0.00 0.00 2.77
2273 6907 2.341257 CACTCGGTCTCACATCAAAGG 58.659 52.381 0.00 0.00 0.00 3.11
2274 6908 1.338200 ACTCGGTCTCACATCAAAGGC 60.338 52.381 0.00 0.00 0.00 4.35
2275 6909 0.389817 TCGGTCTCACATCAAAGGCG 60.390 55.000 0.00 0.00 0.00 5.52
2276 6910 1.796796 GGTCTCACATCAAAGGCGC 59.203 57.895 0.00 0.00 0.00 6.53
2277 6911 1.648467 GGTCTCACATCAAAGGCGCC 61.648 60.000 21.89 21.89 0.00 6.53
2278 6912 1.377202 TCTCACATCAAAGGCGCCC 60.377 57.895 26.15 5.07 0.00 6.13
2279 6913 2.361104 TCACATCAAAGGCGCCCC 60.361 61.111 26.15 0.00 0.00 5.80
2280 6914 2.676121 CACATCAAAGGCGCCCCA 60.676 61.111 26.15 4.45 0.00 4.96
2281 6915 2.676471 ACATCAAAGGCGCCCCAC 60.676 61.111 26.15 0.00 0.00 4.61
2282 6916 2.361610 CATCAAAGGCGCCCCACT 60.362 61.111 26.15 0.00 0.00 4.00
2283 6917 2.044946 ATCAAAGGCGCCCCACTC 60.045 61.111 26.15 0.00 0.00 3.51
2284 6918 3.976701 ATCAAAGGCGCCCCACTCG 62.977 63.158 26.15 6.15 0.00 4.18
2296 6930 2.415010 CACTCGCGGGAGAGGATG 59.585 66.667 33.29 18.25 43.27 3.51
2297 6931 2.121538 CACTCGCGGGAGAGGATGA 61.122 63.158 33.29 0.00 43.27 2.92
2298 6932 1.826054 ACTCGCGGGAGAGGATGAG 60.826 63.158 33.29 7.97 43.27 2.90
2299 6933 3.206211 CTCGCGGGAGAGGATGAGC 62.206 68.421 24.08 0.00 43.27 4.26
2300 6934 3.222855 CGCGGGAGAGGATGAGCT 61.223 66.667 0.00 0.00 0.00 4.09
2301 6935 2.420890 GCGGGAGAGGATGAGCTG 59.579 66.667 0.00 0.00 0.00 4.24
2302 6936 2.130426 GCGGGAGAGGATGAGCTGA 61.130 63.158 0.00 0.00 0.00 4.26
2303 6937 1.470996 GCGGGAGAGGATGAGCTGAT 61.471 60.000 0.00 0.00 0.00 2.90
2304 6938 0.602562 CGGGAGAGGATGAGCTGATC 59.397 60.000 4.34 4.34 0.00 2.92
2305 6939 1.822854 CGGGAGAGGATGAGCTGATCT 60.823 57.143 13.10 0.00 0.00 2.75
2306 6940 1.895131 GGGAGAGGATGAGCTGATCTC 59.105 57.143 13.10 8.49 42.23 2.75
2307 6941 1.895131 GGAGAGGATGAGCTGATCTCC 59.105 57.143 13.10 9.17 46.70 3.71
2308 6942 2.596346 GAGAGGATGAGCTGATCTCCA 58.404 52.381 13.10 0.00 41.18 3.86
2309 6943 3.167485 GAGAGGATGAGCTGATCTCCAT 58.833 50.000 13.10 0.00 41.18 3.41
2310 6944 2.901192 AGAGGATGAGCTGATCTCCATG 59.099 50.000 13.10 0.00 41.18 3.66
2311 6945 1.979308 AGGATGAGCTGATCTCCATGG 59.021 52.381 13.10 4.97 41.18 3.66
2312 6946 1.611148 GGATGAGCTGATCTCCATGGC 60.611 57.143 13.10 0.00 41.18 4.40
2313 6947 0.400975 ATGAGCTGATCTCCATGGCC 59.599 55.000 6.96 0.00 41.18 5.36
2314 6948 0.984432 TGAGCTGATCTCCATGGCCA 60.984 55.000 8.56 8.56 41.18 5.36
2315 6949 0.250381 GAGCTGATCTCCATGGCCAG 60.250 60.000 13.05 12.16 35.77 4.85
2316 6950 0.693430 AGCTGATCTCCATGGCCAGA 60.693 55.000 13.05 14.27 0.00 3.86
2317 6951 0.400975 GCTGATCTCCATGGCCAGAT 59.599 55.000 13.05 14.30 31.70 2.90
2318 6952 1.882780 GCTGATCTCCATGGCCAGATG 60.883 57.143 18.27 5.28 29.01 2.90
2319 6953 1.697982 CTGATCTCCATGGCCAGATGA 59.302 52.381 18.27 10.69 29.01 2.92
2320 6954 1.697982 TGATCTCCATGGCCAGATGAG 59.302 52.381 18.27 16.42 29.01 2.90
2321 6955 1.003349 GATCTCCATGGCCAGATGAGG 59.997 57.143 18.27 14.26 29.01 3.86
2322 6956 1.058428 TCTCCATGGCCAGATGAGGG 61.058 60.000 22.01 12.53 0.00 4.30
2323 6957 1.004626 TCCATGGCCAGATGAGGGA 59.995 57.895 13.05 8.23 0.00 4.20
2324 6958 1.058428 TCCATGGCCAGATGAGGGAG 61.058 60.000 13.05 0.00 0.00 4.30
2325 6959 1.454976 CATGGCCAGATGAGGGAGG 59.545 63.158 13.05 0.00 0.00 4.30
2326 6960 1.058428 CATGGCCAGATGAGGGAGGA 61.058 60.000 13.05 0.00 0.00 3.71
2327 6961 0.327867 ATGGCCAGATGAGGGAGGAA 60.328 55.000 13.05 0.00 0.00 3.36
2328 6962 0.327867 TGGCCAGATGAGGGAGGAAT 60.328 55.000 0.00 0.00 0.00 3.01
2329 6963 1.061424 TGGCCAGATGAGGGAGGAATA 60.061 52.381 0.00 0.00 0.00 1.75
2330 6964 1.349357 GGCCAGATGAGGGAGGAATAC 59.651 57.143 0.00 0.00 0.00 1.89
2331 6965 1.001406 GCCAGATGAGGGAGGAATACG 59.999 57.143 0.00 0.00 0.00 3.06
2332 6966 1.620819 CCAGATGAGGGAGGAATACGG 59.379 57.143 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.695429 TGGTGCAATAATGAAATACTTTGCA 58.305 32.000 4.19 4.19 44.94 4.08
27 28 7.593875 TTGGTGCAATAATGAAATACTTTGC 57.406 32.000 0.00 0.00 39.78 3.68
28 29 9.206870 AGTTTGGTGCAATAATGAAATACTTTG 57.793 29.630 0.00 0.00 0.00 2.77
29 30 9.777297 AAGTTTGGTGCAATAATGAAATACTTT 57.223 25.926 0.00 0.00 0.00 2.66
30 31 9.777297 AAAGTTTGGTGCAATAATGAAATACTT 57.223 25.926 0.00 0.00 0.00 2.24
31 32 9.777297 AAAAGTTTGGTGCAATAATGAAATACT 57.223 25.926 0.00 0.00 0.00 2.12
34 35 8.901793 ACAAAAAGTTTGGTGCAATAATGAAAT 58.098 25.926 5.76 0.00 0.00 2.17
35 36 8.180267 CACAAAAAGTTTGGTGCAATAATGAAA 58.820 29.630 7.49 0.00 35.51 2.69
36 37 7.201679 CCACAAAAAGTTTGGTGCAATAATGAA 60.202 33.333 12.79 0.00 40.09 2.57
37 38 6.259608 CCACAAAAAGTTTGGTGCAATAATGA 59.740 34.615 12.79 0.00 40.09 2.57
38 39 6.038050 ACCACAAAAAGTTTGGTGCAATAATG 59.962 34.615 12.79 3.59 42.26 1.90
39 40 6.118852 ACCACAAAAAGTTTGGTGCAATAAT 58.881 32.000 12.79 0.00 42.26 1.28
40 41 5.491982 ACCACAAAAAGTTTGGTGCAATAA 58.508 33.333 12.79 0.00 42.26 1.40
41 42 5.091261 ACCACAAAAAGTTTGGTGCAATA 57.909 34.783 12.79 0.00 42.26 1.90
42 43 3.949132 ACCACAAAAAGTTTGGTGCAAT 58.051 36.364 12.79 1.83 42.26 3.56
43 44 3.409026 ACCACAAAAAGTTTGGTGCAA 57.591 38.095 12.79 0.00 42.26 4.08
44 45 3.511934 ACTACCACAAAAAGTTTGGTGCA 59.488 39.130 12.79 0.00 43.68 4.57
45 46 3.862845 CACTACCACAAAAAGTTTGGTGC 59.137 43.478 12.79 0.00 43.68 5.01
46 47 4.158764 TCCACTACCACAAAAAGTTTGGTG 59.841 41.667 7.14 9.66 43.68 4.17
47 48 4.158949 GTCCACTACCACAAAAAGTTTGGT 59.841 41.667 5.76 2.63 45.78 3.67
48 49 4.401202 AGTCCACTACCACAAAAAGTTTGG 59.599 41.667 5.76 0.00 36.39 3.28
49 50 5.576447 AGTCCACTACCACAAAAAGTTTG 57.424 39.130 0.00 0.00 0.00 2.93
50 51 7.395206 ACTTTAGTCCACTACCACAAAAAGTTT 59.605 33.333 0.00 0.00 31.84 2.66
51 52 6.888088 ACTTTAGTCCACTACCACAAAAAGTT 59.112 34.615 0.00 0.00 31.84 2.66
52 53 6.317893 CACTTTAGTCCACTACCACAAAAAGT 59.682 38.462 0.00 0.00 34.14 2.66
53 54 6.317893 ACACTTTAGTCCACTACCACAAAAAG 59.682 38.462 0.00 0.00 0.00 2.27
54 55 6.181908 ACACTTTAGTCCACTACCACAAAAA 58.818 36.000 0.00 0.00 0.00 1.94
55 56 5.747342 ACACTTTAGTCCACTACCACAAAA 58.253 37.500 0.00 0.00 0.00 2.44
56 57 5.362105 ACACTTTAGTCCACTACCACAAA 57.638 39.130 0.00 0.00 0.00 2.83
57 58 6.127111 TGTTACACTTTAGTCCACTACCACAA 60.127 38.462 0.00 0.00 0.00 3.33
58 59 5.363292 TGTTACACTTTAGTCCACTACCACA 59.637 40.000 0.00 0.00 0.00 4.17
59 60 5.846203 TGTTACACTTTAGTCCACTACCAC 58.154 41.667 0.00 0.00 0.00 4.16
60 61 6.482898 TTGTTACACTTTAGTCCACTACCA 57.517 37.500 0.00 0.00 0.00 3.25
61 62 6.988580 AGTTTGTTACACTTTAGTCCACTACC 59.011 38.462 0.00 0.00 0.00 3.18
62 63 8.429493 AAGTTTGTTACACTTTAGTCCACTAC 57.571 34.615 0.00 0.00 29.75 2.73
63 64 9.754382 CTAAGTTTGTTACACTTTAGTCCACTA 57.246 33.333 0.00 0.00 35.95 2.74
64 65 7.713942 CCTAAGTTTGTTACACTTTAGTCCACT 59.286 37.037 0.00 0.00 35.95 4.00
65 66 7.712205 TCCTAAGTTTGTTACACTTTAGTCCAC 59.288 37.037 0.00 0.00 35.95 4.02
66 67 7.794041 TCCTAAGTTTGTTACACTTTAGTCCA 58.206 34.615 0.00 0.00 35.95 4.02
67 68 7.930325 ACTCCTAAGTTTGTTACACTTTAGTCC 59.070 37.037 0.00 0.00 35.95 3.85
68 69 8.883954 ACTCCTAAGTTTGTTACACTTTAGTC 57.116 34.615 0.00 0.00 35.95 2.59
69 70 9.106070 CAACTCCTAAGTTTGTTACACTTTAGT 57.894 33.333 0.00 0.00 43.28 2.24
70 71 9.321562 TCAACTCCTAAGTTTGTTACACTTTAG 57.678 33.333 0.00 0.00 43.28 1.85
71 72 9.669887 TTCAACTCCTAAGTTTGTTACACTTTA 57.330 29.630 0.00 0.00 43.28 1.85
72 73 8.570068 TTCAACTCCTAAGTTTGTTACACTTT 57.430 30.769 0.00 0.00 43.28 2.66
73 74 8.747538 ATTCAACTCCTAAGTTTGTTACACTT 57.252 30.769 0.00 0.00 43.28 3.16
272 282 2.427232 TACGTGAAGAAAGGACGGTG 57.573 50.000 0.00 0.00 37.42 4.94
310 321 2.280524 CGGTCTTGCGTGGTGGAA 60.281 61.111 0.00 0.00 0.00 3.53
362 491 0.034756 TATATTGATGCGTGGCGGCT 59.965 50.000 11.43 0.00 0.00 5.52
363 492 0.443869 CTATATTGATGCGTGGCGGC 59.556 55.000 0.00 0.00 0.00 6.53
366 495 1.813513 AGCCTATATTGATGCGTGGC 58.186 50.000 0.00 0.00 39.19 5.01
400 530 8.650490 TCTTTTCTTTCTTTGCATCCCTAAATT 58.350 29.630 0.00 0.00 0.00 1.82
515 701 4.858850 TGTATGGCTTGGATGTTCAAGAT 58.141 39.130 5.23 0.00 44.98 2.40
599 1809 5.413833 AGATTGGTGTGAAGAACATGACATC 59.586 40.000 0.00 0.00 41.97 3.06
739 1951 9.609346 AATAAGTAATTAGTTTAGCATGTCCGT 57.391 29.630 10.74 0.00 0.00 4.69
831 5058 4.832560 ATTTATTTATGCCCCCTCCACT 57.167 40.909 0.00 0.00 0.00 4.00
864 5091 7.932491 TGTGCATTAAGGTACAACTTGTTAGTA 59.068 33.333 8.62 0.00 33.17 1.82
947 5179 9.717942 CCCTTTTCCTATCTTTCTCATATACTG 57.282 37.037 0.00 0.00 0.00 2.74
1022 5257 0.608640 GTCTTCATCCCCGACAGTGT 59.391 55.000 0.00 0.00 0.00 3.55
1031 5266 1.409427 CTGGTAGGTCGTCTTCATCCC 59.591 57.143 0.00 0.00 0.00 3.85
1053 5288 2.905996 TTGTCCCCGAGCAAGGCAT 61.906 57.895 0.00 0.00 0.00 4.40
1182 5419 2.995939 GCAGATCTTGATTGTGTCGTCA 59.004 45.455 0.00 0.00 0.00 4.35
1192 5429 1.297664 GCGAGCTTGCAGATCTTGAT 58.702 50.000 21.53 0.00 34.15 2.57
1227 5464 2.445682 AGTAGGGCTCGATGAGAAGT 57.554 50.000 0.00 0.00 0.00 3.01
1321 5569 2.334946 GCTTGGCTCATTGGTGCGA 61.335 57.895 0.00 0.00 34.40 5.10
1329 5577 2.888464 ATCGCTGCAGCTTGGCTCAT 62.888 55.000 34.22 12.64 36.40 2.90
1369 5617 4.531854 TCTTGATTCCTTGTTGTGACCAA 58.468 39.130 0.00 0.00 0.00 3.67
1370 5618 4.136796 CTCTTGATTCCTTGTTGTGACCA 58.863 43.478 0.00 0.00 0.00 4.02
1377 5625 4.682021 ATTCCCCTCTTGATTCCTTGTT 57.318 40.909 0.00 0.00 0.00 2.83
1417 5665 0.610174 TGCTTCCACTCGAGCTCAAT 59.390 50.000 13.61 0.00 39.60 2.57
1503 5766 5.878669 TCACACGTAGCTCTTGACTATTCTA 59.121 40.000 0.00 0.00 0.00 2.10
1510 5773 2.031069 TCACTCACACGTAGCTCTTGAC 60.031 50.000 0.00 0.00 0.00 3.18
1544 6104 1.375396 TGGAAACCGCACAGGATCG 60.375 57.895 0.00 0.00 45.00 3.69
1553 6156 2.223947 ACATTTTTCTGGTGGAAACCGC 60.224 45.455 0.00 0.00 42.80 5.68
1557 6160 3.196469 TGCACACATTTTTCTGGTGGAAA 59.804 39.130 0.00 0.00 41.58 3.13
1669 6276 2.102420 TGTGAACTCCACCTGTACACAG 59.898 50.000 2.23 2.23 45.09 3.66
1852 6486 2.281900 GTAGCCGTGGGTTTGCCA 60.282 61.111 0.00 0.00 36.17 4.92
1888 6522 5.700183 ACTGAGACATTAGGAGCAGAGATA 58.300 41.667 0.00 0.00 0.00 1.98
1889 6523 4.545678 ACTGAGACATTAGGAGCAGAGAT 58.454 43.478 0.00 0.00 0.00 2.75
1890 6524 3.974719 ACTGAGACATTAGGAGCAGAGA 58.025 45.455 0.00 0.00 0.00 3.10
1891 6525 4.431809 CAACTGAGACATTAGGAGCAGAG 58.568 47.826 0.00 0.00 0.00 3.35
1892 6526 3.196469 CCAACTGAGACATTAGGAGCAGA 59.804 47.826 0.00 0.00 0.00 4.26
1893 6527 3.055530 ACCAACTGAGACATTAGGAGCAG 60.056 47.826 0.00 0.00 0.00 4.24
1894 6528 2.906389 ACCAACTGAGACATTAGGAGCA 59.094 45.455 0.00 0.00 0.00 4.26
1895 6529 3.618690 ACCAACTGAGACATTAGGAGC 57.381 47.619 0.00 0.00 0.00 4.70
1896 6530 5.654650 AGACTACCAACTGAGACATTAGGAG 59.345 44.000 0.00 0.00 0.00 3.69
1897 6531 5.580998 AGACTACCAACTGAGACATTAGGA 58.419 41.667 0.00 0.00 0.00 2.94
1898 6532 5.163499 GGAGACTACCAACTGAGACATTAGG 60.163 48.000 0.00 0.00 0.00 2.69
1899 6533 5.449314 CGGAGACTACCAACTGAGACATTAG 60.449 48.000 0.00 0.00 0.00 1.73
1900 6534 4.398358 CGGAGACTACCAACTGAGACATTA 59.602 45.833 0.00 0.00 0.00 1.90
1901 6535 3.193691 CGGAGACTACCAACTGAGACATT 59.806 47.826 0.00 0.00 0.00 2.71
1902 6536 2.755655 CGGAGACTACCAACTGAGACAT 59.244 50.000 0.00 0.00 0.00 3.06
1903 6537 2.160205 CGGAGACTACCAACTGAGACA 58.840 52.381 0.00 0.00 0.00 3.41
1904 6538 2.161030 ACGGAGACTACCAACTGAGAC 58.839 52.381 0.00 0.00 0.00 3.36
1905 6539 2.581216 ACGGAGACTACCAACTGAGA 57.419 50.000 0.00 0.00 0.00 3.27
1906 6540 2.094649 GGAACGGAGACTACCAACTGAG 60.095 54.545 0.00 0.00 0.00 3.35
1907 6541 1.891150 GGAACGGAGACTACCAACTGA 59.109 52.381 0.00 0.00 0.00 3.41
1908 6542 1.616865 TGGAACGGAGACTACCAACTG 59.383 52.381 0.00 0.00 0.00 3.16
1909 6543 1.893801 CTGGAACGGAGACTACCAACT 59.106 52.381 0.00 0.00 36.31 3.16
1910 6544 1.067071 CCTGGAACGGAGACTACCAAC 60.067 57.143 0.00 0.00 36.31 3.77
1911 6545 1.263356 CCTGGAACGGAGACTACCAA 58.737 55.000 0.00 0.00 36.31 3.67
1912 6546 0.113776 ACCTGGAACGGAGACTACCA 59.886 55.000 0.00 0.00 36.31 3.25
1913 6547 1.264295 AACCTGGAACGGAGACTACC 58.736 55.000 0.00 0.00 36.31 3.18
1914 6548 4.732672 ATAAACCTGGAACGGAGACTAC 57.267 45.455 0.00 0.00 36.31 2.73
1915 6549 5.750352 AAATAAACCTGGAACGGAGACTA 57.250 39.130 0.00 0.00 36.31 2.59
1916 6550 4.635699 AAATAAACCTGGAACGGAGACT 57.364 40.909 0.00 0.00 36.31 3.24
1917 6551 4.142966 CGAAAATAAACCTGGAACGGAGAC 60.143 45.833 0.00 0.00 36.31 3.36
1918 6552 3.998341 CGAAAATAAACCTGGAACGGAGA 59.002 43.478 0.00 0.00 36.31 3.71
1919 6553 3.749609 ACGAAAATAAACCTGGAACGGAG 59.250 43.478 0.00 0.00 36.31 4.63
1920 6554 3.742385 ACGAAAATAAACCTGGAACGGA 58.258 40.909 0.00 0.00 36.31 4.69
1921 6555 3.120095 GGACGAAAATAAACCTGGAACGG 60.120 47.826 0.00 0.00 0.00 4.44
1922 6556 3.120095 GGGACGAAAATAAACCTGGAACG 60.120 47.826 0.00 0.00 0.00 3.95
1923 6557 3.822167 TGGGACGAAAATAAACCTGGAAC 59.178 43.478 0.00 0.00 0.00 3.62
1924 6558 3.822167 GTGGGACGAAAATAAACCTGGAA 59.178 43.478 0.00 0.00 0.00 3.53
1925 6559 3.414269 GTGGGACGAAAATAAACCTGGA 58.586 45.455 0.00 0.00 0.00 3.86
1926 6560 2.490509 GGTGGGACGAAAATAAACCTGG 59.509 50.000 0.00 0.00 0.00 4.45
1927 6561 3.418047 AGGTGGGACGAAAATAAACCTG 58.582 45.455 0.00 0.00 35.28 4.00
1928 6562 3.073356 TGAGGTGGGACGAAAATAAACCT 59.927 43.478 0.00 0.00 39.23 3.50
1929 6563 3.189910 GTGAGGTGGGACGAAAATAAACC 59.810 47.826 0.00 0.00 0.00 3.27
1930 6564 3.816523 TGTGAGGTGGGACGAAAATAAAC 59.183 43.478 0.00 0.00 0.00 2.01
1931 6565 3.816523 GTGTGAGGTGGGACGAAAATAAA 59.183 43.478 0.00 0.00 0.00 1.40
1932 6566 3.404899 GTGTGAGGTGGGACGAAAATAA 58.595 45.455 0.00 0.00 0.00 1.40
1933 6567 2.610976 CGTGTGAGGTGGGACGAAAATA 60.611 50.000 0.00 0.00 33.64 1.40
1934 6568 1.876416 CGTGTGAGGTGGGACGAAAAT 60.876 52.381 0.00 0.00 33.64 1.82
1935 6569 0.531090 CGTGTGAGGTGGGACGAAAA 60.531 55.000 0.00 0.00 33.64 2.29
1936 6570 1.068417 CGTGTGAGGTGGGACGAAA 59.932 57.895 0.00 0.00 33.64 3.46
1937 6571 2.732016 CGTGTGAGGTGGGACGAA 59.268 61.111 0.00 0.00 33.64 3.85
1938 6572 3.299977 CCGTGTGAGGTGGGACGA 61.300 66.667 0.00 0.00 33.64 4.20
1939 6573 2.653953 AAACCGTGTGAGGTGGGACG 62.654 60.000 0.00 0.00 45.21 4.79
1940 6574 0.464916 AAAACCGTGTGAGGTGGGAC 60.465 55.000 0.00 0.00 45.21 4.46
1941 6575 0.256464 AAAAACCGTGTGAGGTGGGA 59.744 50.000 0.00 0.00 45.21 4.37
1942 6576 2.801859 AAAAACCGTGTGAGGTGGG 58.198 52.632 0.00 0.00 45.21 4.61
1959 6593 8.943594 AGGAGGTACCAAAATATGTACAAAAA 57.056 30.769 15.94 0.00 39.23 1.94
1960 6594 7.612633 GGAGGAGGTACCAAAATATGTACAAAA 59.387 37.037 15.94 0.00 39.23 2.44
1961 6595 7.114095 GGAGGAGGTACCAAAATATGTACAAA 58.886 38.462 15.94 0.00 39.23 2.83
1962 6596 6.353255 GGGAGGAGGTACCAAAATATGTACAA 60.353 42.308 15.94 0.00 39.23 2.41
1963 6597 5.131475 GGGAGGAGGTACCAAAATATGTACA 59.869 44.000 15.94 0.00 39.23 2.90
1964 6598 5.131475 TGGGAGGAGGTACCAAAATATGTAC 59.869 44.000 15.94 0.00 42.04 2.90
1965 6599 5.131475 GTGGGAGGAGGTACCAAAATATGTA 59.869 44.000 15.94 0.00 42.04 2.29
1966 6600 4.079958 GTGGGAGGAGGTACCAAAATATGT 60.080 45.833 15.94 0.00 42.04 2.29
1967 6601 4.461198 GTGGGAGGAGGTACCAAAATATG 58.539 47.826 15.94 0.00 42.04 1.78
1968 6602 3.462205 GGTGGGAGGAGGTACCAAAATAT 59.538 47.826 15.94 0.00 42.04 1.28
1969 6603 2.848071 GGTGGGAGGAGGTACCAAAATA 59.152 50.000 15.94 0.00 42.04 1.40
1970 6604 1.639108 GGTGGGAGGAGGTACCAAAAT 59.361 52.381 15.94 0.00 42.04 1.82
1971 6605 1.069775 GGTGGGAGGAGGTACCAAAA 58.930 55.000 15.94 0.00 42.04 2.44
1972 6606 0.195096 AGGTGGGAGGAGGTACCAAA 59.805 55.000 15.94 0.00 42.04 3.28
1973 6607 0.252558 GAGGTGGGAGGAGGTACCAA 60.253 60.000 15.94 0.00 42.04 3.67
1974 6608 1.390926 GAGGTGGGAGGAGGTACCA 59.609 63.158 15.94 0.00 42.04 3.25
1975 6609 0.976590 GTGAGGTGGGAGGAGGTACC 60.977 65.000 2.73 2.73 39.35 3.34
1976 6610 1.321074 CGTGAGGTGGGAGGAGGTAC 61.321 65.000 0.00 0.00 0.00 3.34
1977 6611 1.000019 CGTGAGGTGGGAGGAGGTA 60.000 63.158 0.00 0.00 0.00 3.08
1978 6612 2.283966 CGTGAGGTGGGAGGAGGT 60.284 66.667 0.00 0.00 0.00 3.85
1979 6613 3.775654 GCGTGAGGTGGGAGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
1980 6614 2.681778 AGCGTGAGGTGGGAGGAG 60.682 66.667 0.00 0.00 42.35 3.69
1992 6626 3.989698 CTAGTGGCGGGTCAGCGTG 62.990 68.421 0.00 0.00 38.18 5.34
1993 6627 3.760035 CTAGTGGCGGGTCAGCGT 61.760 66.667 0.00 0.00 38.18 5.07
1995 6629 4.840005 GGCTAGTGGCGGGTCAGC 62.840 72.222 0.00 0.00 42.94 4.26
2024 6658 1.946475 GCTGGTGGAGGACTCGGTAC 61.946 65.000 0.00 0.00 0.00 3.34
2025 6659 1.681327 GCTGGTGGAGGACTCGGTA 60.681 63.158 0.00 0.00 0.00 4.02
2026 6660 2.997897 GCTGGTGGAGGACTCGGT 60.998 66.667 0.00 0.00 0.00 4.69
2027 6661 3.775654 GGCTGGTGGAGGACTCGG 61.776 72.222 0.00 0.00 0.00 4.63
2028 6662 3.775654 GGGCTGGTGGAGGACTCG 61.776 72.222 0.00 0.00 0.00 4.18
2029 6663 3.403558 GGGGCTGGTGGAGGACTC 61.404 72.222 0.00 0.00 0.00 3.36
2044 6678 4.821589 GTCCTGAAGAGCGCGGGG 62.822 72.222 8.83 0.00 32.48 5.73
2046 6680 2.921538 CTACGTCCTGAAGAGCGCGG 62.922 65.000 8.83 0.00 0.00 6.46
2047 6681 1.583967 CTACGTCCTGAAGAGCGCG 60.584 63.158 0.00 0.00 0.00 6.86
2048 6682 0.170561 TTCTACGTCCTGAAGAGCGC 59.829 55.000 0.00 0.00 0.00 5.92
2049 6683 2.631418 TTTCTACGTCCTGAAGAGCG 57.369 50.000 0.00 0.00 0.00 5.03
2067 6701 5.220340 CGCTGGTTAATCGTCGTAGATTTTT 60.220 40.000 11.86 0.00 40.83 1.94
2068 6702 4.266976 CGCTGGTTAATCGTCGTAGATTTT 59.733 41.667 11.86 0.00 40.83 1.82
2069 6703 3.795101 CGCTGGTTAATCGTCGTAGATTT 59.205 43.478 11.86 0.53 40.83 2.17
2070 6704 3.065786 TCGCTGGTTAATCGTCGTAGATT 59.934 43.478 11.47 11.47 42.77 2.40
2071 6705 2.615447 TCGCTGGTTAATCGTCGTAGAT 59.385 45.455 0.00 0.00 40.67 1.98
2072 6706 2.009051 TCGCTGGTTAATCGTCGTAGA 58.991 47.619 0.00 0.00 0.00 2.59
2073 6707 2.463553 TCGCTGGTTAATCGTCGTAG 57.536 50.000 0.00 0.00 0.00 3.51
2074 6708 4.550577 TTATCGCTGGTTAATCGTCGTA 57.449 40.909 0.00 0.00 0.00 3.43
2075 6709 3.425577 TTATCGCTGGTTAATCGTCGT 57.574 42.857 0.00 0.00 0.00 4.34
2076 6710 4.765281 TTTTATCGCTGGTTAATCGTCG 57.235 40.909 0.00 0.00 0.00 5.12
2096 6730 6.550481 TCCCTGGTTATTTTTCGTAGGTTTTT 59.450 34.615 0.00 0.00 0.00 1.94
2097 6731 6.069994 TCCCTGGTTATTTTTCGTAGGTTTT 58.930 36.000 0.00 0.00 0.00 2.43
2098 6732 5.633117 TCCCTGGTTATTTTTCGTAGGTTT 58.367 37.500 0.00 0.00 0.00 3.27
2099 6733 5.245584 TCCCTGGTTATTTTTCGTAGGTT 57.754 39.130 0.00 0.00 0.00 3.50
2100 6734 4.914177 TCCCTGGTTATTTTTCGTAGGT 57.086 40.909 0.00 0.00 0.00 3.08
2101 6735 6.578163 TTTTCCCTGGTTATTTTTCGTAGG 57.422 37.500 0.00 0.00 0.00 3.18
2124 6758 0.319813 CTCGTACGTCCGGGGTTTTT 60.320 55.000 16.05 0.00 0.00 1.94
2125 6759 1.290009 CTCGTACGTCCGGGGTTTT 59.710 57.895 16.05 0.00 0.00 2.43
2126 6760 2.964978 CTCGTACGTCCGGGGTTT 59.035 61.111 16.05 0.00 0.00 3.27
2127 6761 3.752339 GCTCGTACGTCCGGGGTT 61.752 66.667 16.05 0.00 0.00 4.11
2130 6764 3.729906 CTTCGCTCGTACGTCCGGG 62.730 68.421 22.54 16.76 0.00 5.73
2131 6765 2.277120 CTTCGCTCGTACGTCCGG 60.277 66.667 22.54 0.00 0.00 5.14
2132 6766 1.579626 GACTTCGCTCGTACGTCCG 60.580 63.158 16.05 17.84 0.00 4.79
2133 6767 1.579626 CGACTTCGCTCGTACGTCC 60.580 63.158 16.05 6.51 0.00 4.79
2134 6768 3.945240 CGACTTCGCTCGTACGTC 58.055 61.111 16.05 7.63 0.00 4.34
2144 6778 2.892425 GGAGGGCATGCGACTTCG 60.892 66.667 12.44 0.00 43.27 3.79
2145 6779 1.817099 CTGGAGGGCATGCGACTTC 60.817 63.158 12.44 11.79 0.00 3.01
2146 6780 2.270205 CTGGAGGGCATGCGACTT 59.730 61.111 12.44 0.00 0.00 3.01
2147 6781 4.479993 GCTGGAGGGCATGCGACT 62.480 66.667 12.44 12.57 0.00 4.18
2151 6785 3.687321 TTCTCGCTGGAGGGCATGC 62.687 63.158 9.90 9.90 40.85 4.06
2152 6786 1.817099 GTTCTCGCTGGAGGGCATG 60.817 63.158 0.00 0.00 40.85 4.06
2153 6787 2.586792 GTTCTCGCTGGAGGGCAT 59.413 61.111 0.00 0.00 40.85 4.40
2154 6788 4.069232 CGTTCTCGCTGGAGGGCA 62.069 66.667 0.00 0.00 40.85 5.36
2155 6789 3.760035 TCGTTCTCGCTGGAGGGC 61.760 66.667 0.00 0.00 40.85 5.19
2156 6790 2.182030 GTCGTTCTCGCTGGAGGG 59.818 66.667 0.00 0.00 40.85 4.30
2157 6791 1.137825 GAGTCGTTCTCGCTGGAGG 59.862 63.158 0.00 0.00 40.85 4.30
2158 6792 4.775746 GAGTCGTTCTCGCTGGAG 57.224 61.111 0.00 0.00 41.89 3.86
2165 6799 0.858135 CTAGCGTGCGAGTCGTTCTC 60.858 60.000 15.08 2.92 39.62 2.87
2166 6800 1.134901 CTAGCGTGCGAGTCGTTCT 59.865 57.895 15.08 8.52 0.00 3.01
2167 6801 1.126996 GTCTAGCGTGCGAGTCGTTC 61.127 60.000 15.08 6.71 0.00 3.95
2168 6802 1.154263 GTCTAGCGTGCGAGTCGTT 60.154 57.895 15.08 0.00 0.00 3.85
2169 6803 1.968703 GAGTCTAGCGTGCGAGTCGT 61.969 60.000 15.08 0.00 0.00 4.34
2170 6804 1.297012 GAGTCTAGCGTGCGAGTCG 60.297 63.158 8.54 8.54 0.00 4.18
2171 6805 1.062845 GGAGTCTAGCGTGCGAGTC 59.937 63.158 1.94 0.00 0.00 3.36
2172 6806 2.408241 GGGAGTCTAGCGTGCGAGT 61.408 63.158 1.94 0.00 0.00 4.18
2173 6807 2.115911 AGGGAGTCTAGCGTGCGAG 61.116 63.158 0.00 0.00 0.00 5.03
2174 6808 2.045242 AGGGAGTCTAGCGTGCGA 60.045 61.111 0.00 0.00 0.00 5.10
2175 6809 2.103143 CAGGGAGTCTAGCGTGCG 59.897 66.667 0.00 0.00 0.00 5.34
2176 6810 2.202810 GCAGGGAGTCTAGCGTGC 60.203 66.667 0.00 0.00 0.00 5.34
2177 6811 2.496817 GGCAGGGAGTCTAGCGTG 59.503 66.667 0.00 0.00 0.00 5.34
2178 6812 2.760385 GGGCAGGGAGTCTAGCGT 60.760 66.667 0.00 0.00 0.00 5.07
2179 6813 2.443016 AGGGCAGGGAGTCTAGCG 60.443 66.667 0.00 0.00 0.00 4.26
2180 6814 2.494530 CGAGGGCAGGGAGTCTAGC 61.495 68.421 0.00 0.00 0.00 3.42
2181 6815 0.684805 AACGAGGGCAGGGAGTCTAG 60.685 60.000 0.00 0.00 0.00 2.43
2182 6816 0.683504 GAACGAGGGCAGGGAGTCTA 60.684 60.000 0.00 0.00 0.00 2.59
2183 6817 1.985116 GAACGAGGGCAGGGAGTCT 60.985 63.158 0.00 0.00 0.00 3.24
2184 6818 2.579738 GAACGAGGGCAGGGAGTC 59.420 66.667 0.00 0.00 0.00 3.36
2185 6819 3.382832 CGAACGAGGGCAGGGAGT 61.383 66.667 0.00 0.00 0.00 3.85
2186 6820 3.358076 GACGAACGAGGGCAGGGAG 62.358 68.421 0.14 0.00 0.00 4.30
2187 6821 3.379445 GACGAACGAGGGCAGGGA 61.379 66.667 0.14 0.00 0.00 4.20
2188 6822 4.796231 CGACGAACGAGGGCAGGG 62.796 72.222 0.14 0.00 45.77 4.45
2202 6836 3.682292 AAGGGATGAAGGCGGCGAC 62.682 63.158 12.98 8.50 0.00 5.19
2203 6837 3.385749 GAAGGGATGAAGGCGGCGA 62.386 63.158 12.98 0.00 0.00 5.54
2204 6838 2.897350 GAAGGGATGAAGGCGGCG 60.897 66.667 0.51 0.51 0.00 6.46
2205 6839 2.897350 CGAAGGGATGAAGGCGGC 60.897 66.667 0.00 0.00 0.00 6.53
2206 6840 2.897350 GCGAAGGGATGAAGGCGG 60.897 66.667 0.00 0.00 0.00 6.13
2207 6841 2.897350 GGCGAAGGGATGAAGGCG 60.897 66.667 0.00 0.00 0.00 5.52
2208 6842 1.524849 GAGGCGAAGGGATGAAGGC 60.525 63.158 0.00 0.00 0.00 4.35
2209 6843 1.147153 GGAGGCGAAGGGATGAAGG 59.853 63.158 0.00 0.00 0.00 3.46
2210 6844 1.227380 CGGAGGCGAAGGGATGAAG 60.227 63.158 0.00 0.00 0.00 3.02
2211 6845 2.900273 CGGAGGCGAAGGGATGAA 59.100 61.111 0.00 0.00 0.00 2.57
2212 6846 3.849951 GCGGAGGCGAAGGGATGA 61.850 66.667 0.00 0.00 0.00 2.92
2223 6857 4.918201 GATGAAGGGCGGCGGAGG 62.918 72.222 9.78 0.00 0.00 4.30
2224 6858 4.918201 GGATGAAGGGCGGCGGAG 62.918 72.222 9.78 0.00 0.00 4.63
2227 6861 4.489771 AAGGGATGAAGGGCGGCG 62.490 66.667 0.51 0.51 0.00 6.46
2228 6862 2.517166 GAAGGGATGAAGGGCGGC 60.517 66.667 0.00 0.00 0.00 6.53
2229 6863 2.203070 CGAAGGGATGAAGGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
2230 6864 2.897350 GCGAAGGGATGAAGGGCG 60.897 66.667 0.00 0.00 0.00 6.13
2231 6865 2.517166 GGCGAAGGGATGAAGGGC 60.517 66.667 0.00 0.00 0.00 5.19
2232 6866 2.203070 CGGCGAAGGGATGAAGGG 60.203 66.667 0.00 0.00 0.00 3.95
2233 6867 2.897350 GCGGCGAAGGGATGAAGG 60.897 66.667 12.98 0.00 0.00 3.46
2234 6868 2.897350 GGCGGCGAAGGGATGAAG 60.897 66.667 12.98 0.00 0.00 3.02
2235 6869 4.830765 CGGCGGCGAAGGGATGAA 62.831 66.667 29.19 0.00 0.00 2.57
2251 6885 0.388520 TTGATGTGAGACCGAGTGCG 60.389 55.000 0.00 0.00 37.24 5.34
2252 6886 1.728971 CTTTGATGTGAGACCGAGTGC 59.271 52.381 0.00 0.00 0.00 4.40
2253 6887 2.341257 CCTTTGATGTGAGACCGAGTG 58.659 52.381 0.00 0.00 0.00 3.51
2254 6888 1.338200 GCCTTTGATGTGAGACCGAGT 60.338 52.381 0.00 0.00 0.00 4.18
2255 6889 1.363744 GCCTTTGATGTGAGACCGAG 58.636 55.000 0.00 0.00 0.00 4.63
2256 6890 0.389817 CGCCTTTGATGTGAGACCGA 60.390 55.000 0.00 0.00 0.00 4.69
2257 6891 1.970917 GCGCCTTTGATGTGAGACCG 61.971 60.000 0.00 0.00 0.00 4.79
2258 6892 1.648467 GGCGCCTTTGATGTGAGACC 61.648 60.000 22.15 0.00 0.00 3.85
2259 6893 1.648467 GGGCGCCTTTGATGTGAGAC 61.648 60.000 28.56 0.00 0.00 3.36
2260 6894 1.377202 GGGCGCCTTTGATGTGAGA 60.377 57.895 28.56 0.00 0.00 3.27
2261 6895 2.409870 GGGGCGCCTTTGATGTGAG 61.410 63.158 28.56 0.00 0.00 3.51
2262 6896 2.361104 GGGGCGCCTTTGATGTGA 60.361 61.111 28.56 0.00 0.00 3.58
2263 6897 2.676121 TGGGGCGCCTTTGATGTG 60.676 61.111 28.56 0.00 0.00 3.21
2264 6898 2.676471 GTGGGGCGCCTTTGATGT 60.676 61.111 28.56 0.00 0.00 3.06
2265 6899 2.361610 AGTGGGGCGCCTTTGATG 60.362 61.111 28.56 0.00 0.00 3.07
2266 6900 2.044946 GAGTGGGGCGCCTTTGAT 60.045 61.111 28.56 9.03 0.00 2.57
2267 6901 4.697756 CGAGTGGGGCGCCTTTGA 62.698 66.667 28.56 4.61 0.00 2.69
2278 6912 2.835431 ATCCTCTCCCGCGAGTGG 60.835 66.667 8.23 11.20 46.81 4.00
2279 6913 2.069465 CTCATCCTCTCCCGCGAGTG 62.069 65.000 8.23 0.00 37.40 3.51
2280 6914 1.826054 CTCATCCTCTCCCGCGAGT 60.826 63.158 8.23 0.00 37.40 4.18
2281 6915 3.038280 CTCATCCTCTCCCGCGAG 58.962 66.667 8.23 0.00 37.48 5.03
2282 6916 3.219928 GCTCATCCTCTCCCGCGA 61.220 66.667 8.23 0.00 0.00 5.87
2283 6917 3.222855 AGCTCATCCTCTCCCGCG 61.223 66.667 0.00 0.00 0.00 6.46
2284 6918 1.470996 ATCAGCTCATCCTCTCCCGC 61.471 60.000 0.00 0.00 0.00 6.13
2285 6919 0.602562 GATCAGCTCATCCTCTCCCG 59.397 60.000 0.00 0.00 0.00 5.14
2286 6920 1.895131 GAGATCAGCTCATCCTCTCCC 59.105 57.143 0.00 0.00 43.38 4.30
2287 6921 1.895131 GGAGATCAGCTCATCCTCTCC 59.105 57.143 0.00 2.68 45.81 3.71
2288 6922 2.596346 TGGAGATCAGCTCATCCTCTC 58.404 52.381 0.00 0.00 45.81 3.20
2289 6923 2.771562 TGGAGATCAGCTCATCCTCT 57.228 50.000 0.00 0.00 45.81 3.69
2290 6924 2.027929 CCATGGAGATCAGCTCATCCTC 60.028 54.545 5.56 0.00 45.81 3.71
2291 6925 1.979308 CCATGGAGATCAGCTCATCCT 59.021 52.381 5.56 0.00 45.81 3.24
2292 6926 1.611148 GCCATGGAGATCAGCTCATCC 60.611 57.143 18.40 0.00 45.81 3.51
2293 6927 1.611148 GGCCATGGAGATCAGCTCATC 60.611 57.143 18.40 0.00 45.81 2.92
2294 6928 0.400975 GGCCATGGAGATCAGCTCAT 59.599 55.000 18.40 0.00 45.81 2.90
2295 6929 0.984432 TGGCCATGGAGATCAGCTCA 60.984 55.000 18.40 0.00 45.81 4.26
2296 6930 0.250381 CTGGCCATGGAGATCAGCTC 60.250 60.000 18.40 0.00 43.17 4.09
2297 6931 0.693430 TCTGGCCATGGAGATCAGCT 60.693 55.000 18.40 0.00 0.00 4.24
2298 6932 0.400975 ATCTGGCCATGGAGATCAGC 59.599 55.000 18.40 0.00 0.00 4.26
2299 6933 1.697982 TCATCTGGCCATGGAGATCAG 59.302 52.381 18.40 15.94 0.00 2.90
2300 6934 1.697982 CTCATCTGGCCATGGAGATCA 59.302 52.381 18.40 0.78 0.00 2.92
2301 6935 1.003349 CCTCATCTGGCCATGGAGATC 59.997 57.143 18.40 1.69 0.00 2.75
2302 6936 1.065647 CCTCATCTGGCCATGGAGAT 58.934 55.000 18.40 13.18 0.00 2.75
2303 6937 1.058428 CCCTCATCTGGCCATGGAGA 61.058 60.000 18.40 11.13 0.00 3.71
2304 6938 1.058428 TCCCTCATCTGGCCATGGAG 61.058 60.000 18.40 13.52 0.00 3.86
2305 6939 1.004626 TCCCTCATCTGGCCATGGA 59.995 57.895 18.40 0.00 0.00 3.41
2306 6940 1.454976 CTCCCTCATCTGGCCATGG 59.545 63.158 5.51 7.63 0.00 3.66
2307 6941 1.058428 TCCTCCCTCATCTGGCCATG 61.058 60.000 5.51 1.93 0.00 3.66
2308 6942 0.327867 TTCCTCCCTCATCTGGCCAT 60.328 55.000 5.51 0.00 0.00 4.40
2309 6943 0.327867 ATTCCTCCCTCATCTGGCCA 60.328 55.000 4.71 4.71 0.00 5.36
2310 6944 1.349357 GTATTCCTCCCTCATCTGGCC 59.651 57.143 0.00 0.00 0.00 5.36
2311 6945 1.001406 CGTATTCCTCCCTCATCTGGC 59.999 57.143 0.00 0.00 0.00 4.85
2312 6946 1.620819 CCGTATTCCTCCCTCATCTGG 59.379 57.143 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.