Multiple sequence alignment - TraesCS4D01G157600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G157600 | chr4D | 100.000 | 2198 | 0 | 0 | 1 | 2198 | 216532975 | 216535172 | 0.000000e+00 | 4060.0 |
1 | TraesCS4D01G157600 | chr4B | 92.344 | 1489 | 55 | 26 | 201 | 1647 | 245683713 | 245682242 | 0.000000e+00 | 2063.0 |
2 | TraesCS4D01G157600 | chr4B | 93.088 | 217 | 10 | 2 | 1 | 214 | 245685288 | 245685074 | 1.640000e-81 | 313.0 |
3 | TraesCS4D01G157600 | chr4B | 92.188 | 192 | 11 | 2 | 1891 | 2079 | 245681708 | 245681518 | 3.600000e-68 | 268.0 |
4 | TraesCS4D01G157600 | chr4B | 95.161 | 62 | 3 | 0 | 2018 | 2079 | 245681491 | 245681430 | 4.990000e-17 | 99.0 |
5 | TraesCS4D01G157600 | chr4A | 93.853 | 1269 | 58 | 10 | 181 | 1435 | 414424277 | 414423015 | 0.000000e+00 | 1893.0 |
6 | TraesCS4D01G157600 | chr4A | 88.800 | 375 | 36 | 5 | 1825 | 2196 | 414231044 | 414230673 | 2.570000e-124 | 455.0 |
7 | TraesCS4D01G157600 | chr3D | 93.720 | 207 | 13 | 0 | 993 | 1199 | 609922795 | 609922589 | 5.890000e-81 | 311.0 |
8 | TraesCS4D01G157600 | chr3D | 90.909 | 231 | 15 | 4 | 976 | 1200 | 609929087 | 609928857 | 2.740000e-79 | 305.0 |
9 | TraesCS4D01G157600 | chr3D | 81.013 | 158 | 21 | 8 | 1315 | 1470 | 609922483 | 609922333 | 1.380000e-22 | 117.0 |
10 | TraesCS4D01G157600 | chr3D | 91.463 | 82 | 7 | 0 | 1315 | 1396 | 609921553 | 609921472 | 1.780000e-21 | 113.0 |
11 | TraesCS4D01G157600 | chr3B | 90.909 | 231 | 15 | 4 | 976 | 1200 | 821089558 | 821089328 | 2.740000e-79 | 305.0 |
12 | TraesCS4D01G157600 | chr3B | 93.171 | 205 | 14 | 0 | 995 | 1199 | 821076983 | 821076779 | 3.550000e-78 | 302.0 |
13 | TraesCS4D01G157600 | chr3B | 87.349 | 166 | 15 | 2 | 1753 | 1912 | 529407954 | 529407789 | 3.730000e-43 | 185.0 |
14 | TraesCS4D01G157600 | chr3B | 85.124 | 121 | 12 | 5 | 1315 | 1433 | 821076673 | 821076557 | 3.830000e-23 | 119.0 |
15 | TraesCS4D01G157600 | chr3B | 79.032 | 124 | 13 | 8 | 279 | 394 | 821091339 | 821091221 | 3.030000e-09 | 73.1 |
16 | TraesCS4D01G157600 | chr3A | 90.909 | 231 | 15 | 4 | 976 | 1200 | 743758278 | 743758048 | 2.740000e-79 | 305.0 |
17 | TraesCS4D01G157600 | chr3A | 91.220 | 205 | 18 | 0 | 995 | 1199 | 743674296 | 743674092 | 1.660000e-71 | 279.0 |
18 | TraesCS4D01G157600 | chr3A | 86.624 | 157 | 21 | 0 | 1756 | 1912 | 738134356 | 738134512 | 8.070000e-40 | 174.0 |
19 | TraesCS4D01G157600 | chr5D | 87.500 | 168 | 14 | 2 | 1754 | 1914 | 377987999 | 377988166 | 1.040000e-43 | 187.0 |
20 | TraesCS4D01G157600 | chr2D | 87.730 | 163 | 13 | 2 | 1757 | 1912 | 134301488 | 134301650 | 1.340000e-42 | 183.0 |
21 | TraesCS4D01G157600 | chr7A | 86.471 | 170 | 16 | 2 | 1754 | 1916 | 59406904 | 59407073 | 1.730000e-41 | 180.0 |
22 | TraesCS4D01G157600 | chr1D | 86.747 | 166 | 14 | 3 | 1757 | 1915 | 314014422 | 314014258 | 6.240000e-41 | 178.0 |
23 | TraesCS4D01G157600 | chr1D | 91.463 | 82 | 7 | 0 | 1315 | 1396 | 347311299 | 347311218 | 1.780000e-21 | 113.0 |
24 | TraesCS4D01G157600 | chr5A | 86.228 | 167 | 15 | 3 | 1757 | 1915 | 558675497 | 558675663 | 8.070000e-40 | 174.0 |
25 | TraesCS4D01G157600 | chr1B | 86.145 | 166 | 13 | 7 | 1755 | 1911 | 31245241 | 31245077 | 1.040000e-38 | 171.0 |
26 | TraesCS4D01G157600 | chr7D | 91.463 | 82 | 7 | 0 | 1315 | 1396 | 623714290 | 623714209 | 1.780000e-21 | 113.0 |
27 | TraesCS4D01G157600 | chr7B | 91.463 | 82 | 7 | 0 | 1315 | 1396 | 123985844 | 123985763 | 1.780000e-21 | 113.0 |
28 | TraesCS4D01G157600 | chr5B | 91.463 | 82 | 7 | 0 | 1315 | 1396 | 616514035 | 616514116 | 1.780000e-21 | 113.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4D01G157600 | chr4D | 216532975 | 216535172 | 2197 | False | 4060.00 | 4060 | 100.00000 | 1 | 2198 | 1 | chr4D.!!$F1 | 2197 |
1 | TraesCS4D01G157600 | chr4B | 245681430 | 245685288 | 3858 | True | 685.75 | 2063 | 93.19525 | 1 | 2079 | 4 | chr4B.!!$R1 | 2078 |
2 | TraesCS4D01G157600 | chr4A | 414423015 | 414424277 | 1262 | True | 1893.00 | 1893 | 93.85300 | 181 | 1435 | 1 | chr4A.!!$R2 | 1254 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
444 | 1847 | 0.686441 | TGTCACATCCCTCCCCTACG | 60.686 | 60.0 | 0.0 | 0.0 | 0.0 | 3.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1677 | 3109 | 0.318107 | CAAAACTCCGCACTGGCTTG | 60.318 | 55.0 | 0.0 | 0.0 | 38.1 | 4.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
126 | 130 | 9.715121 | AAAATTACTAAGGATCGTACAAAGTGA | 57.285 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
152 | 156 | 8.862325 | AAATATCAACATGAACACACCTTCTA | 57.138 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
168 | 172 | 7.227910 | CACACCTTCTAGGCTAAAGTTTGTTTA | 59.772 | 37.037 | 0.00 | 0.00 | 39.63 | 2.01 |
176 | 180 | 9.886132 | CTAGGCTAAAGTTTGTTTATCTAGGAA | 57.114 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
266 | 1656 | 1.303317 | GGCCCAACAGACCATTCGT | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
275 | 1665 | 1.593006 | CAGACCATTCGTTCGCATACC | 59.407 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
276 | 1666 | 0.935196 | GACCATTCGTTCGCATACCC | 59.065 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
279 | 1669 | 1.227438 | ATTCGTTCGCATACCCCGG | 60.227 | 57.895 | 0.00 | 0.00 | 0.00 | 5.73 |
281 | 1671 | 4.524318 | CGTTCGCATACCCCGGCT | 62.524 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
318 | 1720 | 4.142359 | CCTTATATAAGCATCGGACGAGCT | 60.142 | 45.833 | 15.86 | 11.11 | 41.03 | 4.09 |
444 | 1847 | 0.686441 | TGTCACATCCCTCCCCTACG | 60.686 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
445 | 1848 | 1.760875 | TCACATCCCTCCCCTACGC | 60.761 | 63.158 | 0.00 | 0.00 | 0.00 | 4.42 |
446 | 1849 | 2.446036 | ACATCCCTCCCCTACGCC | 60.446 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
447 | 1850 | 2.122813 | CATCCCTCCCCTACGCCT | 60.123 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
460 | 1863 | 0.978667 | TACGCCTGCCTATTCACCCA | 60.979 | 55.000 | 0.00 | 0.00 | 0.00 | 4.51 |
615 | 2019 | 7.277174 | ACTCCTTTCATTTTCCACTTGTAAG | 57.723 | 36.000 | 0.00 | 0.00 | 0.00 | 2.34 |
671 | 2075 | 3.220674 | AGATCTCAAATAAGCCCTGGC | 57.779 | 47.619 | 0.00 | 0.00 | 42.33 | 4.85 |
770 | 2174 | 3.497332 | AGCTGTATTATGCCTCGGTAGA | 58.503 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
797 | 2201 | 2.094597 | TGCTGCCGATTTCTTGATTTGG | 60.095 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
828 | 2232 | 2.309136 | AGTATGCAAAACAGGGGCTT | 57.691 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
846 | 2250 | 4.382362 | GGGCTTTGAATTGCTTGCTTATCT | 60.382 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
849 | 2253 | 6.324819 | GCTTTGAATTGCTTGCTTATCTGTA | 58.675 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
872 | 2276 | 5.864418 | ACCGCTTACTTATGGATCACTTA | 57.136 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
974 | 2378 | 3.320256 | TGAATTGTACACCAGCATTTGCA | 59.680 | 39.130 | 5.20 | 0.00 | 45.16 | 4.08 |
1251 | 2655 | 8.621532 | AACTCTACTGCATTTGAATCAACTTA | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
1252 | 2656 | 8.621532 | ACTCTACTGCATTTGAATCAACTTAA | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
1410 | 2814 | 8.553696 | GGTTATTTGAATTGATTGGATGAATGC | 58.446 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
1461 | 2893 | 2.922740 | TGGTTACCTGTGGTGACTTC | 57.077 | 50.000 | 2.07 | 0.00 | 41.20 | 3.01 |
1463 | 2895 | 2.104111 | TGGTTACCTGTGGTGACTTCTG | 59.896 | 50.000 | 2.07 | 0.00 | 41.20 | 3.02 |
1465 | 2897 | 3.433173 | GGTTACCTGTGGTGACTTCTGTT | 60.433 | 47.826 | 10.67 | 0.00 | 41.20 | 3.16 |
1467 | 2899 | 2.919228 | ACCTGTGGTGACTTCTGTTTC | 58.081 | 47.619 | 0.00 | 0.00 | 32.98 | 2.78 |
1468 | 2900 | 2.505819 | ACCTGTGGTGACTTCTGTTTCT | 59.494 | 45.455 | 0.00 | 0.00 | 32.98 | 2.52 |
1469 | 2901 | 3.054361 | ACCTGTGGTGACTTCTGTTTCTT | 60.054 | 43.478 | 0.00 | 0.00 | 32.98 | 2.52 |
1470 | 2902 | 3.313526 | CCTGTGGTGACTTCTGTTTCTTG | 59.686 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
1471 | 2903 | 4.191544 | CTGTGGTGACTTCTGTTTCTTGA | 58.808 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
1494 | 2926 | 4.936891 | ACACTTGAACTGGAAAATTCAGC | 58.063 | 39.130 | 0.00 | 0.00 | 36.26 | 4.26 |
1499 | 2931 | 6.321181 | ACTTGAACTGGAAAATTCAGCAGTTA | 59.679 | 34.615 | 13.96 | 4.06 | 38.73 | 2.24 |
1516 | 2948 | 4.333926 | GCAGTTATCTCTCACAACAATCCC | 59.666 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
1519 | 2951 | 0.036388 | TCTCTCACAACAATCCCGCC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1552 | 2984 | 6.849085 | AGTGAATGCAATTTGGGTTACATA | 57.151 | 33.333 | 0.00 | 0.00 | 36.07 | 2.29 |
1573 | 3005 | 7.141363 | ACATACAAAGTTTTCTCTCACAATGC | 58.859 | 34.615 | 0.00 | 0.00 | 0.00 | 3.56 |
1587 | 3019 | 1.005294 | CAATGCTGTGCTCCGTTTGC | 61.005 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1588 | 3020 | 1.174712 | AATGCTGTGCTCCGTTTGCT | 61.175 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1599 | 3031 | 2.808543 | CTCCGTTTGCTTAAAGCTGTCT | 59.191 | 45.455 | 0.00 | 0.00 | 42.97 | 3.41 |
1612 | 3044 | 5.573337 | AAAGCTGTCTTATCATCCAAAGC | 57.427 | 39.130 | 0.00 | 0.00 | 31.02 | 3.51 |
1617 | 3049 | 4.194640 | TGTCTTATCATCCAAAGCTGCTC | 58.805 | 43.478 | 1.00 | 0.00 | 0.00 | 4.26 |
1624 | 3056 | 4.194640 | TCATCCAAAGCTGCTCTATGAAC | 58.805 | 43.478 | 1.00 | 0.00 | 0.00 | 3.18 |
1640 | 3072 | 0.507358 | GAACGGAGAACAGCGTTGAC | 59.493 | 55.000 | 6.16 | 0.00 | 0.00 | 3.18 |
1647 | 3079 | 2.924290 | GAGAACAGCGTTGACAGATACC | 59.076 | 50.000 | 6.16 | 0.00 | 0.00 | 2.73 |
1648 | 3080 | 2.299013 | AGAACAGCGTTGACAGATACCA | 59.701 | 45.455 | 6.16 | 0.00 | 0.00 | 3.25 |
1649 | 3081 | 3.055819 | AGAACAGCGTTGACAGATACCAT | 60.056 | 43.478 | 6.16 | 0.00 | 0.00 | 3.55 |
1650 | 3082 | 4.159693 | AGAACAGCGTTGACAGATACCATA | 59.840 | 41.667 | 6.16 | 0.00 | 0.00 | 2.74 |
1651 | 3083 | 3.782046 | ACAGCGTTGACAGATACCATAC | 58.218 | 45.455 | 6.16 | 0.00 | 0.00 | 2.39 |
1652 | 3084 | 3.447586 | ACAGCGTTGACAGATACCATACT | 59.552 | 43.478 | 6.16 | 0.00 | 0.00 | 2.12 |
1653 | 3085 | 4.643334 | ACAGCGTTGACAGATACCATACTA | 59.357 | 41.667 | 6.16 | 0.00 | 0.00 | 1.82 |
1654 | 3086 | 4.976731 | CAGCGTTGACAGATACCATACTAC | 59.023 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
1655 | 3087 | 4.643334 | AGCGTTGACAGATACCATACTACA | 59.357 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1656 | 3088 | 4.738740 | GCGTTGACAGATACCATACTACAC | 59.261 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
1657 | 3089 | 4.968181 | CGTTGACAGATACCATACTACACG | 59.032 | 45.833 | 0.00 | 0.00 | 0.00 | 4.49 |
1658 | 3090 | 5.220719 | CGTTGACAGATACCATACTACACGA | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1659 | 3091 | 6.512903 | CGTTGACAGATACCATACTACACGAT | 60.513 | 42.308 | 0.00 | 0.00 | 0.00 | 3.73 |
1660 | 3092 | 6.954487 | TGACAGATACCATACTACACGATT | 57.046 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
1661 | 3093 | 7.342769 | TGACAGATACCATACTACACGATTT | 57.657 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1662 | 3094 | 7.200455 | TGACAGATACCATACTACACGATTTG | 58.800 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
1663 | 3095 | 6.513180 | ACAGATACCATACTACACGATTTGG | 58.487 | 40.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1664 | 3096 | 5.926542 | CAGATACCATACTACACGATTTGGG | 59.073 | 44.000 | 0.00 | 0.00 | 0.00 | 4.12 |
1665 | 3097 | 5.601313 | AGATACCATACTACACGATTTGGGT | 59.399 | 40.000 | 0.00 | 0.00 | 0.00 | 4.51 |
1666 | 3098 | 4.563140 | ACCATACTACACGATTTGGGTT | 57.437 | 40.909 | 0.00 | 0.00 | 0.00 | 4.11 |
1667 | 3099 | 5.680594 | ACCATACTACACGATTTGGGTTA | 57.319 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
1668 | 3100 | 5.422145 | ACCATACTACACGATTTGGGTTAC | 58.578 | 41.667 | 0.00 | 0.00 | 0.00 | 2.50 |
1669 | 3101 | 5.188359 | ACCATACTACACGATTTGGGTTACT | 59.812 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1670 | 3102 | 5.751990 | CCATACTACACGATTTGGGTTACTC | 59.248 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1671 | 3103 | 4.198028 | ACTACACGATTTGGGTTACTCC | 57.802 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
1672 | 3104 | 3.579586 | ACTACACGATTTGGGTTACTCCA | 59.420 | 43.478 | 0.00 | 0.00 | 38.11 | 3.86 |
1673 | 3105 | 3.495434 | ACACGATTTGGGTTACTCCAA | 57.505 | 42.857 | 0.00 | 2.03 | 44.29 | 3.53 |
1681 | 3113 | 1.892474 | TGGGTTACTCCAAATGCAAGC | 59.108 | 47.619 | 0.00 | 0.00 | 38.11 | 4.01 |
1682 | 3114 | 1.204704 | GGGTTACTCCAAATGCAAGCC | 59.795 | 52.381 | 0.00 | 0.00 | 38.11 | 4.35 |
1683 | 3115 | 1.892474 | GGTTACTCCAAATGCAAGCCA | 59.108 | 47.619 | 0.00 | 0.00 | 35.97 | 4.75 |
1684 | 3116 | 2.094545 | GGTTACTCCAAATGCAAGCCAG | 60.095 | 50.000 | 0.00 | 0.00 | 35.97 | 4.85 |
1685 | 3117 | 2.558359 | GTTACTCCAAATGCAAGCCAGT | 59.442 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
1686 | 3118 | 0.963962 | ACTCCAAATGCAAGCCAGTG | 59.036 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1687 | 3119 | 0.389426 | CTCCAAATGCAAGCCAGTGC | 60.389 | 55.000 | 0.00 | 0.00 | 45.15 | 4.40 |
1701 | 3133 | 1.200020 | CCAGTGCGGAGTTTTGGAATC | 59.800 | 52.381 | 0.00 | 0.00 | 36.56 | 2.52 |
1736 | 3169 | 9.489393 | GAAGCCATTTCAAAGTTAAACTTTTTG | 57.511 | 29.630 | 0.00 | 1.50 | 45.38 | 2.44 |
1764 | 3197 | 9.725206 | ACATTTTCTTTACCTATCTACTCCCTA | 57.275 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
1814 | 3269 | 9.751542 | AGAGATTTCAATAAGAACTATGTACGG | 57.248 | 33.333 | 0.00 | 0.00 | 35.56 | 4.02 |
1864 | 3324 | 6.109359 | ACTCATTTTGCTCTGTATGTAGTCC | 58.891 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1874 | 3334 | 5.828747 | TCTGTATGTAGTCCGCATTAGAAC | 58.171 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1880 | 3340 | 4.951715 | TGTAGTCCGCATTAGAACCTCTAA | 59.048 | 41.667 | 0.00 | 0.00 | 42.49 | 2.10 |
1917 | 3683 | 5.896073 | AGGAATGGAGGGAGTATAAAGTG | 57.104 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
1918 | 3684 | 4.103311 | AGGAATGGAGGGAGTATAAAGTGC | 59.897 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
1925 | 3691 | 5.041191 | AGGGAGTATAAAGTGCCATTGAG | 57.959 | 43.478 | 0.00 | 0.00 | 38.98 | 3.02 |
1937 | 3703 | 7.951530 | AAGTGCCATTGAGAATAAAGTTTTG | 57.048 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1947 | 3713 | 4.835056 | AGAATAAAGTTTTGCAAGGAGGCT | 59.165 | 37.500 | 0.00 | 0.00 | 34.04 | 4.58 |
1971 | 3737 | 2.041701 | AGCCAAATGCCTTGTGAAGTT | 58.958 | 42.857 | 0.00 | 0.00 | 42.71 | 2.66 |
1972 | 3738 | 2.036346 | AGCCAAATGCCTTGTGAAGTTC | 59.964 | 45.455 | 0.00 | 0.00 | 42.71 | 3.01 |
1983 | 3749 | 5.473504 | GCCTTGTGAAGTTCTTCCAGAAATA | 59.526 | 40.000 | 4.17 | 0.00 | 35.75 | 1.40 |
2086 | 3855 | 8.190122 | TGATTGATGAAATATTTTAGTTGCGCT | 58.810 | 29.630 | 9.73 | 0.00 | 0.00 | 5.92 |
2087 | 3856 | 7.739022 | TTGATGAAATATTTTAGTTGCGCTG | 57.261 | 32.000 | 9.73 | 0.00 | 0.00 | 5.18 |
2089 | 3858 | 7.188834 | TGATGAAATATTTTAGTTGCGCTGAG | 58.811 | 34.615 | 9.73 | 0.00 | 0.00 | 3.35 |
2090 | 3859 | 6.735678 | TGAAATATTTTAGTTGCGCTGAGA | 57.264 | 33.333 | 9.73 | 0.00 | 0.00 | 3.27 |
2091 | 3860 | 7.320443 | TGAAATATTTTAGTTGCGCTGAGAT | 57.680 | 32.000 | 9.73 | 0.00 | 0.00 | 2.75 |
2092 | 3861 | 7.188834 | TGAAATATTTTAGTTGCGCTGAGATG | 58.811 | 34.615 | 9.73 | 0.00 | 0.00 | 2.90 |
2093 | 3862 | 5.679734 | ATATTTTAGTTGCGCTGAGATGG | 57.320 | 39.130 | 9.73 | 0.00 | 0.00 | 3.51 |
2094 | 3863 | 2.472695 | TTTAGTTGCGCTGAGATGGT | 57.527 | 45.000 | 9.73 | 0.00 | 0.00 | 3.55 |
2097 | 3866 | 2.472695 | AGTTGCGCTGAGATGGTTAA | 57.527 | 45.000 | 9.73 | 0.00 | 0.00 | 2.01 |
2098 | 3867 | 2.991250 | AGTTGCGCTGAGATGGTTAAT | 58.009 | 42.857 | 9.73 | 0.00 | 0.00 | 1.40 |
2099 | 3868 | 3.347216 | AGTTGCGCTGAGATGGTTAATT | 58.653 | 40.909 | 9.73 | 0.00 | 0.00 | 1.40 |
2100 | 3869 | 3.375299 | AGTTGCGCTGAGATGGTTAATTC | 59.625 | 43.478 | 9.73 | 0.00 | 0.00 | 2.17 |
2101 | 3870 | 2.984562 | TGCGCTGAGATGGTTAATTCA | 58.015 | 42.857 | 9.73 | 0.00 | 0.00 | 2.57 |
2102 | 3871 | 3.342719 | TGCGCTGAGATGGTTAATTCAA | 58.657 | 40.909 | 9.73 | 0.00 | 0.00 | 2.69 |
2103 | 3872 | 3.126858 | TGCGCTGAGATGGTTAATTCAAC | 59.873 | 43.478 | 9.73 | 0.00 | 36.32 | 3.18 |
2106 | 3875 | 5.064707 | GCGCTGAGATGGTTAATTCAACTAA | 59.935 | 40.000 | 0.00 | 0.00 | 37.30 | 2.24 |
2107 | 3876 | 6.709643 | CGCTGAGATGGTTAATTCAACTAAG | 58.290 | 40.000 | 0.00 | 0.00 | 37.30 | 2.18 |
2108 | 3877 | 6.535150 | CGCTGAGATGGTTAATTCAACTAAGA | 59.465 | 38.462 | 7.26 | 0.00 | 37.30 | 2.10 |
2109 | 3878 | 7.254252 | CGCTGAGATGGTTAATTCAACTAAGAG | 60.254 | 40.741 | 7.26 | 2.31 | 37.30 | 2.85 |
2111 | 3880 | 8.777865 | TGAGATGGTTAATTCAACTAAGAGTG | 57.222 | 34.615 | 0.00 | 0.00 | 37.30 | 3.51 |
2112 | 3881 | 8.375506 | TGAGATGGTTAATTCAACTAAGAGTGT | 58.624 | 33.333 | 0.00 | 0.00 | 37.30 | 3.55 |
2124 | 3893 | 9.470399 | TTCAACTAAGAGTGTATATGGTAGTGA | 57.530 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2125 | 3894 | 9.642343 | TCAACTAAGAGTGTATATGGTAGTGAT | 57.358 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2152 | 3921 | 2.634982 | TCATTTGTGATTTCCTGCGC | 57.365 | 45.000 | 0.00 | 0.00 | 0.00 | 6.09 |
2153 | 3922 | 1.885233 | TCATTTGTGATTTCCTGCGCA | 59.115 | 42.857 | 10.98 | 10.98 | 0.00 | 6.09 |
2155 | 3924 | 2.879002 | TTTGTGATTTCCTGCGCAAA | 57.121 | 40.000 | 13.05 | 2.84 | 40.82 | 3.68 |
2156 | 3925 | 2.879002 | TTGTGATTTCCTGCGCAAAA | 57.121 | 40.000 | 13.05 | 11.00 | 32.21 | 2.44 |
2158 | 3927 | 3.383620 | TGTGATTTCCTGCGCAAAAAT | 57.616 | 38.095 | 23.15 | 23.15 | 0.00 | 1.82 |
2160 | 3929 | 4.876125 | TGTGATTTCCTGCGCAAAAATAA | 58.124 | 34.783 | 23.04 | 16.65 | 0.00 | 1.40 |
2163 | 3932 | 7.093354 | TGTGATTTCCTGCGCAAAAATAAATA | 58.907 | 30.769 | 23.04 | 13.82 | 0.00 | 1.40 |
2164 | 3933 | 7.600375 | TGTGATTTCCTGCGCAAAAATAAATAA | 59.400 | 29.630 | 23.04 | 11.08 | 0.00 | 1.40 |
2165 | 3934 | 8.439286 | GTGATTTCCTGCGCAAAAATAAATAAA | 58.561 | 29.630 | 23.04 | 9.91 | 0.00 | 1.40 |
2166 | 3935 | 8.655092 | TGATTTCCTGCGCAAAAATAAATAAAG | 58.345 | 29.630 | 23.04 | 4.31 | 0.00 | 1.85 |
2167 | 3936 | 7.954788 | TTTCCTGCGCAAAAATAAATAAAGT | 57.045 | 28.000 | 13.05 | 0.00 | 0.00 | 2.66 |
2168 | 3937 | 9.646427 | ATTTCCTGCGCAAAAATAAATAAAGTA | 57.354 | 25.926 | 22.17 | 0.00 | 0.00 | 2.24 |
2169 | 3938 | 9.646427 | TTTCCTGCGCAAAAATAAATAAAGTAT | 57.354 | 25.926 | 13.05 | 0.00 | 0.00 | 2.12 |
2170 | 3939 | 8.850454 | TCCTGCGCAAAAATAAATAAAGTATC | 57.150 | 30.769 | 13.05 | 0.00 | 0.00 | 2.24 |
2171 | 3940 | 8.462811 | TCCTGCGCAAAAATAAATAAAGTATCA | 58.537 | 29.630 | 13.05 | 0.00 | 0.00 | 2.15 |
2172 | 3941 | 9.248291 | CCTGCGCAAAAATAAATAAAGTATCAT | 57.752 | 29.630 | 13.05 | 0.00 | 0.00 | 2.45 |
2187 | 3956 | 7.945033 | AAAGTATCATTTGCGATTTGTTTGT | 57.055 | 28.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2189 | 3958 | 8.673626 | AAGTATCATTTGCGATTTGTTTGTAG | 57.326 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
2190 | 3959 | 6.747280 | AGTATCATTTGCGATTTGTTTGTAGC | 59.253 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
2191 | 3960 | 4.864633 | TCATTTGCGATTTGTTTGTAGCA | 58.135 | 34.783 | 0.00 | 0.00 | 0.00 | 3.49 |
2192 | 3961 | 4.916831 | TCATTTGCGATTTGTTTGTAGCAG | 59.083 | 37.500 | 0.00 | 0.00 | 35.95 | 4.24 |
2193 | 3962 | 2.330231 | TGCGATTTGTTTGTAGCAGC | 57.670 | 45.000 | 0.00 | 0.00 | 0.00 | 5.25 |
2194 | 3963 | 1.879380 | TGCGATTTGTTTGTAGCAGCT | 59.121 | 42.857 | 0.00 | 0.00 | 0.00 | 4.24 |
2195 | 3964 | 3.070748 | TGCGATTTGTTTGTAGCAGCTA | 58.929 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
2196 | 3965 | 3.689161 | TGCGATTTGTTTGTAGCAGCTAT | 59.311 | 39.130 | 5.14 | 0.00 | 0.00 | 2.97 |
2197 | 3966 | 4.031028 | GCGATTTGTTTGTAGCAGCTATG | 58.969 | 43.478 | 5.14 | 0.00 | 0.00 | 2.23 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
64 | 65 | 5.065235 | GCACCCAAGTTGGTACTTACTAAA | 58.935 | 41.667 | 20.54 | 0.00 | 42.67 | 1.85 |
65 | 66 | 4.348754 | AGCACCCAAGTTGGTACTTACTAA | 59.651 | 41.667 | 20.54 | 0.00 | 42.67 | 2.24 |
66 | 67 | 3.905591 | AGCACCCAAGTTGGTACTTACTA | 59.094 | 43.478 | 20.54 | 0.00 | 42.67 | 1.82 |
67 | 68 | 2.709397 | AGCACCCAAGTTGGTACTTACT | 59.291 | 45.455 | 20.54 | 6.27 | 42.67 | 2.24 |
126 | 130 | 8.181904 | AGAAGGTGTGTTCATGTTGATATTTT | 57.818 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
152 | 156 | 9.755122 | AATTCCTAGATAAACAAACTTTAGCCT | 57.245 | 29.630 | 0.00 | 0.00 | 0.00 | 4.58 |
176 | 180 | 3.439857 | TTGCAACTCTAGGCCTCAAAT | 57.560 | 42.857 | 9.68 | 0.00 | 0.00 | 2.32 |
223 | 1602 | 1.600023 | CCCAAACGAGTGCTGGTTTA | 58.400 | 50.000 | 11.00 | 0.00 | 39.02 | 2.01 |
226 | 1605 | 2.594592 | GCCCAAACGAGTGCTGGT | 60.595 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
266 | 1656 | 4.849310 | GCAGCCGGGGTATGCGAA | 62.849 | 66.667 | 2.18 | 0.00 | 0.00 | 4.70 |
444 | 1847 | 0.825010 | CCATGGGTGAATAGGCAGGC | 60.825 | 60.000 | 2.85 | 0.00 | 0.00 | 4.85 |
445 | 1848 | 0.825010 | GCCATGGGTGAATAGGCAGG | 60.825 | 60.000 | 15.13 | 0.00 | 44.59 | 4.85 |
446 | 1849 | 2.724520 | GCCATGGGTGAATAGGCAG | 58.275 | 57.895 | 15.13 | 0.00 | 44.59 | 4.85 |
460 | 1863 | 1.068083 | CGCAGATCCGTAGTGCCAT | 59.932 | 57.895 | 0.00 | 0.00 | 33.42 | 4.40 |
615 | 2019 | 1.539827 | ACATCGGCACAAAACTAAGCC | 59.460 | 47.619 | 0.00 | 0.00 | 43.61 | 4.35 |
770 | 2174 | 5.581126 | TCAAGAAATCGGCAGCAAAATAT | 57.419 | 34.783 | 0.00 | 0.00 | 0.00 | 1.28 |
828 | 2232 | 6.620678 | GGTTACAGATAAGCAAGCAATTCAA | 58.379 | 36.000 | 0.00 | 0.00 | 38.44 | 2.69 |
846 | 2250 | 5.128171 | AGTGATCCATAAGTAAGCGGTTACA | 59.872 | 40.000 | 32.21 | 17.71 | 41.06 | 2.41 |
849 | 2253 | 4.755266 | AGTGATCCATAAGTAAGCGGTT | 57.245 | 40.909 | 4.76 | 4.76 | 0.00 | 4.44 |
872 | 2276 | 4.939052 | AAGCGAATGCCTACATACTAGT | 57.061 | 40.909 | 0.00 | 0.00 | 44.31 | 2.57 |
1251 | 2655 | 1.609208 | AGACAAAGCCAGCGTTCATT | 58.391 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1252 | 2656 | 1.609208 | AAGACAAAGCCAGCGTTCAT | 58.391 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1444 | 2876 | 3.470645 | ACAGAAGTCACCACAGGTAAC | 57.529 | 47.619 | 0.00 | 0.00 | 32.11 | 2.50 |
1463 | 2895 | 5.560966 | TCCAGTTCAAGTGTTCAAGAAAC | 57.439 | 39.130 | 0.00 | 0.00 | 38.43 | 2.78 |
1465 | 2897 | 6.582677 | TTTTCCAGTTCAAGTGTTCAAGAA | 57.417 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1467 | 2899 | 7.035004 | TGAATTTTCCAGTTCAAGTGTTCAAG | 58.965 | 34.615 | 0.00 | 0.00 | 31.85 | 3.02 |
1468 | 2900 | 6.929625 | TGAATTTTCCAGTTCAAGTGTTCAA | 58.070 | 32.000 | 0.00 | 0.00 | 31.85 | 2.69 |
1469 | 2901 | 6.522625 | TGAATTTTCCAGTTCAAGTGTTCA | 57.477 | 33.333 | 0.00 | 0.00 | 31.85 | 3.18 |
1470 | 2902 | 5.460091 | GCTGAATTTTCCAGTTCAAGTGTTC | 59.540 | 40.000 | 0.00 | 0.00 | 34.26 | 3.18 |
1471 | 2903 | 5.105392 | TGCTGAATTTTCCAGTTCAAGTGTT | 60.105 | 36.000 | 0.00 | 0.00 | 34.26 | 3.32 |
1494 | 2926 | 4.568359 | CGGGATTGTTGTGAGAGATAACTG | 59.432 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
1499 | 2931 | 1.407437 | GGCGGGATTGTTGTGAGAGAT | 60.407 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
1516 | 2948 | 3.743911 | TGCATTCACTATTATTACCGGCG | 59.256 | 43.478 | 0.00 | 0.00 | 0.00 | 6.46 |
1519 | 2951 | 7.594758 | CCCAAATTGCATTCACTATTATTACCG | 59.405 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
1552 | 2984 | 5.126061 | ACAGCATTGTGAGAGAAAACTTTGT | 59.874 | 36.000 | 0.00 | 0.00 | 35.83 | 2.83 |
1571 | 3003 | 0.533978 | TAAGCAAACGGAGCACAGCA | 60.534 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1573 | 3005 | 2.918131 | GCTTTAAGCAAACGGAGCACAG | 60.918 | 50.000 | 12.54 | 0.00 | 41.89 | 3.66 |
1577 | 3009 | 1.266989 | ACAGCTTTAAGCAAACGGAGC | 59.733 | 47.619 | 19.63 | 0.00 | 45.56 | 4.70 |
1581 | 3013 | 5.927030 | TGATAAGACAGCTTTAAGCAAACG | 58.073 | 37.500 | 19.63 | 6.90 | 45.56 | 3.60 |
1587 | 3019 | 7.066766 | AGCTTTGGATGATAAGACAGCTTTAAG | 59.933 | 37.037 | 0.00 | 0.00 | 35.56 | 1.85 |
1588 | 3020 | 6.886459 | AGCTTTGGATGATAAGACAGCTTTAA | 59.114 | 34.615 | 0.00 | 0.00 | 35.56 | 1.52 |
1599 | 3031 | 6.178607 | TCATAGAGCAGCTTTGGATGATAA | 57.821 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
1612 | 3044 | 3.443037 | CTGTTCTCCGTTCATAGAGCAG | 58.557 | 50.000 | 0.00 | 0.00 | 42.23 | 4.24 |
1617 | 3049 | 2.279582 | ACGCTGTTCTCCGTTCATAG | 57.720 | 50.000 | 0.00 | 0.00 | 33.26 | 2.23 |
1624 | 3056 | 0.318699 | TCTGTCAACGCTGTTCTCCG | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1640 | 3072 | 5.926542 | CCCAAATCGTGTAGTATGGTATCTG | 59.073 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1647 | 3079 | 5.751990 | GGAGTAACCCAAATCGTGTAGTATG | 59.248 | 44.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1648 | 3080 | 5.422970 | TGGAGTAACCCAAATCGTGTAGTAT | 59.577 | 40.000 | 0.00 | 0.00 | 38.00 | 2.12 |
1649 | 3081 | 4.771577 | TGGAGTAACCCAAATCGTGTAGTA | 59.228 | 41.667 | 0.00 | 0.00 | 38.00 | 1.82 |
1650 | 3082 | 3.579586 | TGGAGTAACCCAAATCGTGTAGT | 59.420 | 43.478 | 0.00 | 0.00 | 38.00 | 2.73 |
1651 | 3083 | 4.196626 | TGGAGTAACCCAAATCGTGTAG | 57.803 | 45.455 | 0.00 | 0.00 | 38.00 | 2.74 |
1652 | 3084 | 4.620589 | TTGGAGTAACCCAAATCGTGTA | 57.379 | 40.909 | 0.00 | 0.00 | 42.75 | 2.90 |
1653 | 3085 | 3.495434 | TTGGAGTAACCCAAATCGTGT | 57.505 | 42.857 | 0.00 | 0.00 | 42.75 | 4.49 |
1660 | 3092 | 2.298729 | GCTTGCATTTGGAGTAACCCAA | 59.701 | 45.455 | 0.00 | 0.00 | 43.90 | 4.12 |
1661 | 3093 | 1.892474 | GCTTGCATTTGGAGTAACCCA | 59.108 | 47.619 | 0.00 | 0.00 | 38.00 | 4.51 |
1662 | 3094 | 1.204704 | GGCTTGCATTTGGAGTAACCC | 59.795 | 52.381 | 0.00 | 0.00 | 38.00 | 4.11 |
1663 | 3095 | 1.892474 | TGGCTTGCATTTGGAGTAACC | 59.108 | 47.619 | 0.00 | 0.00 | 39.54 | 2.85 |
1664 | 3096 | 2.558359 | ACTGGCTTGCATTTGGAGTAAC | 59.442 | 45.455 | 0.00 | 0.00 | 0.00 | 2.50 |
1665 | 3097 | 2.557924 | CACTGGCTTGCATTTGGAGTAA | 59.442 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
1666 | 3098 | 2.161855 | CACTGGCTTGCATTTGGAGTA | 58.838 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
1667 | 3099 | 0.963962 | CACTGGCTTGCATTTGGAGT | 59.036 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1668 | 3100 | 0.389426 | GCACTGGCTTGCATTTGGAG | 60.389 | 55.000 | 6.77 | 0.00 | 42.49 | 3.86 |
1669 | 3101 | 1.667151 | GCACTGGCTTGCATTTGGA | 59.333 | 52.632 | 6.77 | 0.00 | 42.49 | 3.53 |
1670 | 3102 | 1.735198 | CGCACTGGCTTGCATTTGG | 60.735 | 57.895 | 11.40 | 0.00 | 43.15 | 3.28 |
1671 | 3103 | 1.735198 | CCGCACTGGCTTGCATTTG | 60.735 | 57.895 | 11.40 | 0.00 | 43.15 | 2.32 |
1672 | 3104 | 1.870055 | CTCCGCACTGGCTTGCATTT | 61.870 | 55.000 | 11.40 | 0.00 | 43.15 | 2.32 |
1673 | 3105 | 2.282391 | TCCGCACTGGCTTGCATT | 60.282 | 55.556 | 11.40 | 0.00 | 43.15 | 3.56 |
1674 | 3106 | 2.749044 | CTCCGCACTGGCTTGCAT | 60.749 | 61.111 | 11.40 | 0.00 | 43.15 | 3.96 |
1675 | 3107 | 3.772853 | AACTCCGCACTGGCTTGCA | 62.773 | 57.895 | 11.40 | 0.00 | 43.15 | 4.08 |
1676 | 3108 | 2.075426 | AAAACTCCGCACTGGCTTGC | 62.075 | 55.000 | 1.98 | 1.98 | 39.28 | 4.01 |
1677 | 3109 | 0.318107 | CAAAACTCCGCACTGGCTTG | 60.318 | 55.000 | 0.00 | 0.00 | 38.10 | 4.01 |
1678 | 3110 | 1.455383 | CCAAAACTCCGCACTGGCTT | 61.455 | 55.000 | 0.00 | 0.00 | 38.10 | 4.35 |
1679 | 3111 | 1.898574 | CCAAAACTCCGCACTGGCT | 60.899 | 57.895 | 0.00 | 0.00 | 38.10 | 4.75 |
1680 | 3112 | 1.452145 | TTCCAAAACTCCGCACTGGC | 61.452 | 55.000 | 0.00 | 0.00 | 37.80 | 4.85 |
1681 | 3113 | 1.200020 | GATTCCAAAACTCCGCACTGG | 59.800 | 52.381 | 0.00 | 0.00 | 40.09 | 4.00 |
1682 | 3114 | 1.200020 | GGATTCCAAAACTCCGCACTG | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
1683 | 3115 | 1.202879 | TGGATTCCAAAACTCCGCACT | 60.203 | 47.619 | 1.94 | 0.00 | 31.36 | 4.40 |
1684 | 3116 | 1.200020 | CTGGATTCCAAAACTCCGCAC | 59.800 | 52.381 | 6.88 | 0.00 | 30.80 | 5.34 |
1685 | 3117 | 1.202879 | ACTGGATTCCAAAACTCCGCA | 60.203 | 47.619 | 6.88 | 0.00 | 30.80 | 5.69 |
1686 | 3118 | 1.200020 | CACTGGATTCCAAAACTCCGC | 59.800 | 52.381 | 6.88 | 0.00 | 30.80 | 5.54 |
1687 | 3119 | 2.504367 | ACACTGGATTCCAAAACTCCG | 58.496 | 47.619 | 6.88 | 0.00 | 30.80 | 4.63 |
1688 | 3120 | 4.340950 | TCAAACACTGGATTCCAAAACTCC | 59.659 | 41.667 | 6.88 | 0.00 | 30.80 | 3.85 |
1689 | 3121 | 5.514274 | TCAAACACTGGATTCCAAAACTC | 57.486 | 39.130 | 6.88 | 0.00 | 30.80 | 3.01 |
1701 | 3133 | 3.731652 | TGAAATGGCTTCAAACACTGG | 57.268 | 42.857 | 0.00 | 0.00 | 41.21 | 4.00 |
1736 | 3169 | 9.761504 | GGGAGTAGATAGGTAAAGAAAATGTAC | 57.238 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1742 | 3175 | 9.725206 | AACATAGGGAGTAGATAGGTAAAGAAA | 57.275 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1828 | 3283 | 8.559536 | CAGAGCAAAATGAGTTACACTCTAAAA | 58.440 | 33.333 | 5.53 | 0.00 | 45.27 | 1.52 |
1839 | 3294 | 6.595716 | GGACTACATACAGAGCAAAATGAGTT | 59.404 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1864 | 3324 | 6.969828 | AGTCTTTTTAGAGGTTCTAATGCG | 57.030 | 37.500 | 0.00 | 0.00 | 38.60 | 4.73 |
1880 | 3340 | 9.868160 | CCCTCCATTCCTAAATATAAGTCTTTT | 57.132 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
1917 | 3683 | 6.128472 | CCTTGCAAAACTTTATTCTCAATGGC | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
1918 | 3684 | 7.153985 | TCCTTGCAAAACTTTATTCTCAATGG | 58.846 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
1925 | 3691 | 4.925646 | CAGCCTCCTTGCAAAACTTTATTC | 59.074 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
1971 | 3737 | 5.190528 | ACTGCAGGAATCTATTTCTGGAAGA | 59.809 | 40.000 | 19.93 | 0.00 | 42.18 | 2.87 |
1972 | 3738 | 5.435291 | ACTGCAGGAATCTATTTCTGGAAG | 58.565 | 41.667 | 19.93 | 6.72 | 42.18 | 3.46 |
1983 | 3749 | 3.387374 | CCTGAGTATGACTGCAGGAATCT | 59.613 | 47.826 | 19.93 | 9.35 | 41.69 | 2.40 |
2063 | 3832 | 7.534282 | TCAGCGCAACTAAAATATTTCATCAA | 58.466 | 30.769 | 11.47 | 0.00 | 0.00 | 2.57 |
2079 | 3848 | 3.126858 | TGAATTAACCATCTCAGCGCAAC | 59.873 | 43.478 | 11.47 | 0.00 | 0.00 | 4.17 |
2081 | 3850 | 2.984562 | TGAATTAACCATCTCAGCGCA | 58.015 | 42.857 | 11.47 | 0.00 | 0.00 | 6.09 |
2082 | 3851 | 3.375299 | AGTTGAATTAACCATCTCAGCGC | 59.625 | 43.478 | 0.00 | 0.00 | 40.24 | 5.92 |
2084 | 3853 | 7.550906 | ACTCTTAGTTGAATTAACCATCTCAGC | 59.449 | 37.037 | 0.00 | 0.00 | 40.24 | 4.26 |
2086 | 3855 | 8.375506 | ACACTCTTAGTTGAATTAACCATCTCA | 58.624 | 33.333 | 0.00 | 0.00 | 40.24 | 3.27 |
2087 | 3856 | 8.779354 | ACACTCTTAGTTGAATTAACCATCTC | 57.221 | 34.615 | 0.00 | 0.00 | 40.24 | 2.75 |
2098 | 3867 | 9.470399 | TCACTACCATATACACTCTTAGTTGAA | 57.530 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2099 | 3868 | 9.642343 | ATCACTACCATATACACTCTTAGTTGA | 57.358 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2126 | 3895 | 7.596248 | GCGCAGGAAATCACAAATGATATTAAT | 59.404 | 33.333 | 0.30 | 0.00 | 45.26 | 1.40 |
2127 | 3896 | 6.917477 | GCGCAGGAAATCACAAATGATATTAA | 59.083 | 34.615 | 0.30 | 0.00 | 45.26 | 1.40 |
2128 | 3897 | 6.039159 | TGCGCAGGAAATCACAAATGATATTA | 59.961 | 34.615 | 5.66 | 0.00 | 45.26 | 0.98 |
2129 | 3898 | 5.163530 | TGCGCAGGAAATCACAAATGATATT | 60.164 | 36.000 | 5.66 | 0.00 | 45.26 | 1.28 |
2130 | 3899 | 4.338964 | TGCGCAGGAAATCACAAATGATAT | 59.661 | 37.500 | 5.66 | 0.00 | 45.26 | 1.63 |
2133 | 3902 | 1.885233 | TGCGCAGGAAATCACAAATGA | 59.115 | 42.857 | 5.66 | 0.00 | 39.83 | 2.57 |
2134 | 3903 | 2.350899 | TGCGCAGGAAATCACAAATG | 57.649 | 45.000 | 5.66 | 0.00 | 0.00 | 2.32 |
2135 | 3904 | 3.383620 | TTTGCGCAGGAAATCACAAAT | 57.616 | 38.095 | 11.31 | 0.00 | 44.43 | 2.32 |
2136 | 3905 | 2.879002 | TTTGCGCAGGAAATCACAAA | 57.121 | 40.000 | 11.31 | 0.00 | 44.43 | 2.83 |
2144 | 3913 | 9.296400 | GATACTTTATTTATTTTTGCGCAGGAA | 57.704 | 29.630 | 11.31 | 10.21 | 34.77 | 3.36 |
2146 | 3915 | 8.627487 | TGATACTTTATTTATTTTTGCGCAGG | 57.373 | 30.769 | 11.31 | 0.00 | 0.00 | 4.85 |
2163 | 3932 | 7.945033 | ACAAACAAATCGCAAATGATACTTT | 57.055 | 28.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2164 | 3933 | 7.273381 | GCTACAAACAAATCGCAAATGATACTT | 59.727 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2165 | 3934 | 6.747280 | GCTACAAACAAATCGCAAATGATACT | 59.253 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
2166 | 3935 | 6.526325 | TGCTACAAACAAATCGCAAATGATAC | 59.474 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2167 | 3936 | 6.616017 | TGCTACAAACAAATCGCAAATGATA | 58.384 | 32.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2168 | 3937 | 5.468592 | TGCTACAAACAAATCGCAAATGAT | 58.531 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
2169 | 3938 | 4.864633 | TGCTACAAACAAATCGCAAATGA | 58.135 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
2170 | 3939 | 4.433283 | GCTGCTACAAACAAATCGCAAATG | 60.433 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
2171 | 3940 | 3.674753 | GCTGCTACAAACAAATCGCAAAT | 59.325 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
2172 | 3941 | 3.049206 | GCTGCTACAAACAAATCGCAAA | 58.951 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
2173 | 3942 | 2.293122 | AGCTGCTACAAACAAATCGCAA | 59.707 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
2174 | 3943 | 1.879380 | AGCTGCTACAAACAAATCGCA | 59.121 | 42.857 | 0.00 | 0.00 | 0.00 | 5.10 |
2175 | 3944 | 2.619013 | AGCTGCTACAAACAAATCGC | 57.381 | 45.000 | 0.00 | 0.00 | 0.00 | 4.58 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.