Multiple sequence alignment - TraesCS4D01G156700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G156700 chr4D 100.000 4949 0 0 1 4949 211742372 211737424 0.000000e+00 9140.0
1 TraesCS4D01G156700 chr4D 100.000 376 0 0 5224 5599 211737149 211736774 0.000000e+00 695.0
2 TraesCS4D01G156700 chr4B 95.577 1854 50 7 1916 3767 316520403 316518580 0.000000e+00 2940.0
3 TraesCS4D01G156700 chr4B 96.471 1275 33 3 428 1702 316522085 316520823 0.000000e+00 2095.0
4 TraesCS4D01G156700 chr4B 94.753 953 26 6 3997 4949 316518343 316517415 0.000000e+00 1461.0
5 TraesCS4D01G156700 chr4B 90.909 385 25 5 5224 5599 316517016 316516633 5.000000e-140 508.0
6 TraesCS4D01G156700 chr4B 92.908 141 4 2 3752 3892 316518475 316518341 3.420000e-47 200.0
7 TraesCS4D01G156700 chr4B 95.283 106 4 1 1704 1809 316520666 316520562 3.470000e-37 167.0
8 TraesCS4D01G156700 chr4B 93.333 45 3 0 229 273 316522121 316522077 3.620000e-07 67.6
9 TraesCS4D01G156700 chr4A 94.122 1429 46 6 674 2078 258637575 258636161 0.000000e+00 2139.0
10 TraesCS4D01G156700 chr4A 94.453 1334 45 8 2581 3891 258629087 258627760 0.000000e+00 2026.0
11 TraesCS4D01G156700 chr4A 95.276 508 23 1 2076 2583 258629653 258629147 0.000000e+00 804.0
12 TraesCS4D01G156700 chr4A 96.305 406 15 0 4010 4415 258627742 258627337 0.000000e+00 667.0
13 TraesCS4D01G156700 chr4A 94.527 201 11 0 428 628 258637781 258637581 1.510000e-80 311.0
14 TraesCS4D01G156700 chr4A 95.783 166 7 0 265 430 377271608 377271773 9.250000e-68 268.0
15 TraesCS4D01G156700 chr4A 87.222 180 10 6 5224 5401 258626766 258626598 5.720000e-45 193.0
16 TraesCS4D01G156700 chr4A 93.600 125 7 1 3893 4016 239632708 239632832 9.580000e-43 185.0
17 TraesCS4D01G156700 chr3B 98.824 170 1 1 260 428 785459152 785458983 9.120000e-78 302.0
18 TraesCS4D01G156700 chr3B 100.000 162 0 0 267 428 595291185 595291024 3.280000e-77 300.0
19 TraesCS4D01G156700 chr3B 95.041 121 4 2 3879 3999 12156979 12156861 7.400000e-44 189.0
20 TraesCS4D01G156700 chr7B 100.000 162 0 0 267 428 679494539 679494700 3.280000e-77 300.0
21 TraesCS4D01G156700 chr7B 87.755 196 15 4 1 188 156435434 156435240 2.630000e-53 220.0
22 TraesCS4D01G156700 chr7B 87.629 194 14 4 1 185 218559767 218559959 3.400000e-52 217.0
23 TraesCS4D01G156700 chr7A 99.394 165 1 0 264 428 448100996 448101160 3.280000e-77 300.0
24 TraesCS4D01G156700 chr7A 100.000 162 0 0 267 428 448101162 448101323 3.280000e-77 300.0
25 TraesCS4D01G156700 chr7A 96.386 166 6 0 265 430 138380628 138380793 1.990000e-69 274.0
26 TraesCS4D01G156700 chr7A 95.763 118 5 0 3893 4010 269960320 269960437 2.060000e-44 191.0
27 TraesCS4D01G156700 chr2A 99.394 165 1 0 267 431 36232855 36232691 3.280000e-77 300.0
28 TraesCS4D01G156700 chr2A 87.629 194 14 4 1 185 533912210 533912402 3.400000e-52 217.0
29 TraesCS4D01G156700 chr2A 97.345 113 3 0 3887 3999 78333821 78333709 5.720000e-45 193.0
30 TraesCS4D01G156700 chr6A 95.031 161 8 0 268 428 556981539 556981379 2.590000e-63 254.0
31 TraesCS4D01G156700 chr6A 87.629 194 14 4 1 185 604314470 604314662 3.400000e-52 217.0
32 TraesCS4D01G156700 chr6A 93.600 125 6 2 3887 4009 537040700 537040824 9.580000e-43 185.0
33 TraesCS4D01G156700 chr6A 76.364 165 29 8 3548 3707 545115943 545115784 4.650000e-11 80.5
34 TraesCS4D01G156700 chr6D 90.674 193 13 3 1 188 291414918 291414726 9.310000e-63 252.0
35 TraesCS4D01G156700 chr2D 88.947 190 14 5 1 185 37299816 37300003 1.570000e-55 228.0
36 TraesCS4D01G156700 chr2D 95.000 120 5 1 3893 4012 382457278 382457160 2.660000e-43 187.0
37 TraesCS4D01G156700 chrUn 87.817 197 14 4 1 188 50335389 50335194 7.300000e-54 222.0
38 TraesCS4D01G156700 chr6B 88.083 193 14 8 1 188 674215694 674215506 2.630000e-53 220.0
39 TraesCS4D01G156700 chr6B 77.778 162 32 3 3539 3696 588073086 588073247 4.620000e-16 97.1
40 TraesCS4D01G156700 chr5D 87.565 193 17 5 1 188 504003973 504003783 3.400000e-52 217.0
41 TraesCS4D01G156700 chr3A 96.581 117 2 2 3888 4002 221571427 221571543 5.720000e-45 193.0
42 TraesCS4D01G156700 chr1B 96.522 115 4 0 3892 4006 687254050 687253936 2.060000e-44 191.0
43 TraesCS4D01G156700 chr1A 96.522 115 4 0 3892 4006 535427578 535427464 2.060000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G156700 chr4D 211736774 211742372 5598 True 4917.500000 9140 100.000000 1 5599 2 chr4D.!!$R1 5598
1 TraesCS4D01G156700 chr4B 316516633 316522121 5488 True 1062.657143 2940 94.176286 229 5599 7 chr4B.!!$R1 5370
2 TraesCS4D01G156700 chr4A 258636161 258637781 1620 True 1225.000000 2139 94.324500 428 2078 2 chr4A.!!$R2 1650
3 TraesCS4D01G156700 chr4A 258626598 258629653 3055 True 922.500000 2026 93.314000 2076 5401 4 chr4A.!!$R1 3325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 339 0.033642 GTATCTTACCGGCCAGGAGC 59.966 60.000 18.74 0.0 45.00 4.70 F
383 384 0.035439 CGGATGGTGGCCTGTAACTT 60.035 55.000 3.32 0.0 0.00 2.66 F
688 689 0.379669 CCTGATCCGAATGCTTGTGC 59.620 55.000 0.00 0.0 40.20 4.57 F
762 763 0.591659 GGGGTTCTCGTTTTGAGTGC 59.408 55.000 0.00 0.0 45.46 4.40 F
2025 2260 1.272490 TCAAGGCAGACCAAGAGTACG 59.728 52.381 0.00 0.0 39.06 3.67 F
3269 3568 0.326927 TTTTCCGGCCTAGAAGGGTG 59.673 55.000 0.00 0.0 35.37 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2260 1.583709 GCGTGCAAGCTTATTCGCC 60.584 57.895 17.84 10.43 38.16 5.54 R
2112 2347 2.427453 ACATTCGGCTAGTCAGTACCAG 59.573 50.000 0.00 0.00 0.00 4.00 R
2517 2752 3.162666 TCTTATCTGAATCCCGCGGTAT 58.837 45.455 26.12 11.93 0.00 2.73 R
2897 3194 9.901172 ATAACCGACTTTTAGATACCAAGAAAT 57.099 29.630 0.00 0.00 0.00 2.17 R
3982 4428 0.178926 TGGTACTCCCTCCGTTCCAA 60.179 55.000 0.00 0.00 30.28 3.53 R
5368 5948 0.035915 GGAGTGGAGTGAGAAAGGGC 60.036 60.000 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.489771 CGATGCAGGGTGGGGGAC 62.490 72.222 0.00 0.00 0.00 4.46
27 28 3.017581 GATGCAGGGTGGGGGACT 61.018 66.667 0.00 0.00 0.00 3.85
28 29 3.017581 ATGCAGGGTGGGGGACTC 61.018 66.667 0.00 0.00 0.00 3.36
29 30 3.586225 ATGCAGGGTGGGGGACTCT 62.586 63.158 0.00 0.00 34.74 3.24
30 31 3.403558 GCAGGGTGGGGGACTCTC 61.404 72.222 0.00 0.00 30.29 3.20
31 32 2.689034 CAGGGTGGGGGACTCTCC 60.689 72.222 0.00 0.00 30.29 3.71
32 33 3.208592 AGGGTGGGGGACTCTCCA 61.209 66.667 0.00 0.00 38.64 3.86
33 34 2.689034 GGGTGGGGGACTCTCCAG 60.689 72.222 0.00 0.00 38.64 3.86
34 35 2.450243 GGTGGGGGACTCTCCAGA 59.550 66.667 0.00 0.00 38.64 3.86
36 37 1.687493 GTGGGGGACTCTCCAGAGG 60.687 68.421 8.47 0.00 46.13 3.69
42 43 3.125520 GACTCTCCAGAGGCCTAGG 57.874 63.158 4.42 11.95 44.42 3.02
43 44 1.075600 ACTCTCCAGAGGCCTAGGC 60.076 63.158 26.55 26.55 46.13 3.93
44 45 2.123683 TCTCCAGAGGCCTAGGCG 60.124 66.667 27.24 13.30 43.06 5.52
45 46 3.230245 CTCCAGAGGCCTAGGCGG 61.230 72.222 27.24 21.70 43.06 6.13
46 47 4.860881 TCCAGAGGCCTAGGCGGG 62.861 72.222 27.24 23.28 43.06 6.13
48 49 3.854669 CAGAGGCCTAGGCGGGTG 61.855 72.222 27.24 18.84 43.06 4.61
128 129 4.840005 GCGGCGGGGAAGGAGAAG 62.840 72.222 9.78 0.00 0.00 2.85
129 130 4.162690 CGGCGGGGAAGGAGAAGG 62.163 72.222 0.00 0.00 0.00 3.46
130 131 3.798511 GGCGGGGAAGGAGAAGGG 61.799 72.222 0.00 0.00 0.00 3.95
131 132 3.798511 GCGGGGAAGGAGAAGGGG 61.799 72.222 0.00 0.00 0.00 4.79
132 133 2.040606 CGGGGAAGGAGAAGGGGA 59.959 66.667 0.00 0.00 0.00 4.81
133 134 2.066999 CGGGGAAGGAGAAGGGGAG 61.067 68.421 0.00 0.00 0.00 4.30
134 135 1.694525 GGGGAAGGAGAAGGGGAGG 60.695 68.421 0.00 0.00 0.00 4.30
135 136 1.083141 GGGAAGGAGAAGGGGAGGT 59.917 63.158 0.00 0.00 0.00 3.85
136 137 1.275421 GGGAAGGAGAAGGGGAGGTG 61.275 65.000 0.00 0.00 0.00 4.00
137 138 1.275421 GGAAGGAGAAGGGGAGGTGG 61.275 65.000 0.00 0.00 0.00 4.61
138 139 1.229984 AAGGAGAAGGGGAGGTGGG 60.230 63.158 0.00 0.00 0.00 4.61
139 140 2.692741 GGAGAAGGGGAGGTGGGG 60.693 72.222 0.00 0.00 0.00 4.96
140 141 2.454941 GAGAAGGGGAGGTGGGGA 59.545 66.667 0.00 0.00 0.00 4.81
141 142 1.996187 GAGAAGGGGAGGTGGGGAC 60.996 68.421 0.00 0.00 0.00 4.46
182 183 4.180946 CCGAGTCGCCCGAGAGTG 62.181 72.222 7.12 0.00 0.00 3.51
183 184 4.180946 CGAGTCGCCCGAGAGTGG 62.181 72.222 0.00 0.00 0.00 4.00
184 185 2.750637 GAGTCGCCCGAGAGTGGA 60.751 66.667 0.00 0.00 0.00 4.02
185 186 2.043852 AGTCGCCCGAGAGTGGAT 60.044 61.111 0.00 0.00 0.00 3.41
186 187 2.105128 GTCGCCCGAGAGTGGATG 59.895 66.667 0.00 0.00 0.00 3.51
187 188 2.044352 TCGCCCGAGAGTGGATGA 60.044 61.111 0.00 0.00 0.00 2.92
188 189 1.680989 TCGCCCGAGAGTGGATGAA 60.681 57.895 0.00 0.00 0.00 2.57
189 190 1.218047 CGCCCGAGAGTGGATGAAA 59.782 57.895 0.00 0.00 0.00 2.69
190 191 0.807667 CGCCCGAGAGTGGATGAAAG 60.808 60.000 0.00 0.00 0.00 2.62
191 192 1.092345 GCCCGAGAGTGGATGAAAGC 61.092 60.000 0.00 0.00 0.00 3.51
192 193 0.807667 CCCGAGAGTGGATGAAAGCG 60.808 60.000 0.00 0.00 0.00 4.68
193 194 0.173481 CCGAGAGTGGATGAAAGCGA 59.827 55.000 0.00 0.00 0.00 4.93
194 195 1.404181 CCGAGAGTGGATGAAAGCGAA 60.404 52.381 0.00 0.00 0.00 4.70
195 196 2.544685 CGAGAGTGGATGAAAGCGAAT 58.455 47.619 0.00 0.00 0.00 3.34
196 197 2.932614 CGAGAGTGGATGAAAGCGAATT 59.067 45.455 0.00 0.00 0.00 2.17
197 198 3.242220 CGAGAGTGGATGAAAGCGAATTG 60.242 47.826 0.00 0.00 0.00 2.32
198 199 3.679389 AGAGTGGATGAAAGCGAATTGT 58.321 40.909 0.00 0.00 0.00 2.71
199 200 4.074970 AGAGTGGATGAAAGCGAATTGTT 58.925 39.130 0.00 0.00 0.00 2.83
200 201 4.520492 AGAGTGGATGAAAGCGAATTGTTT 59.480 37.500 0.00 0.00 0.00 2.83
201 202 5.010012 AGAGTGGATGAAAGCGAATTGTTTT 59.990 36.000 0.00 0.00 33.27 2.43
202 203 5.222631 AGTGGATGAAAGCGAATTGTTTTC 58.777 37.500 3.25 3.25 45.09 2.29
207 208 4.806056 GAAAGCGAATTGTTTTCATCGG 57.194 40.909 5.14 0.00 44.48 4.18
208 209 3.915437 AAGCGAATTGTTTTCATCGGT 57.085 38.095 0.00 0.00 42.26 4.69
209 210 5.365403 AAAGCGAATTGTTTTCATCGGTA 57.635 34.783 0.00 0.00 40.50 4.02
210 211 5.560966 AAGCGAATTGTTTTCATCGGTAT 57.439 34.783 0.00 0.00 40.50 2.73
211 212 4.908736 AGCGAATTGTTTTCATCGGTATG 58.091 39.130 0.00 0.00 39.91 2.39
212 213 4.394920 AGCGAATTGTTTTCATCGGTATGT 59.605 37.500 0.00 0.00 39.91 2.29
213 214 5.583061 AGCGAATTGTTTTCATCGGTATGTA 59.417 36.000 0.00 0.00 39.91 2.29
214 215 6.092944 AGCGAATTGTTTTCATCGGTATGTAA 59.907 34.615 0.00 0.00 39.91 2.41
215 216 6.743627 GCGAATTGTTTTCATCGGTATGTAAA 59.256 34.615 0.00 0.00 34.23 2.01
216 217 7.431084 GCGAATTGTTTTCATCGGTATGTAAAT 59.569 33.333 0.00 0.00 35.60 1.40
217 218 9.284594 CGAATTGTTTTCATCGGTATGTAAATT 57.715 29.630 0.00 0.00 35.60 1.82
220 221 9.730420 ATTGTTTTCATCGGTATGTAAATTAGC 57.270 29.630 0.00 0.00 35.60 3.09
221 222 8.270080 TGTTTTCATCGGTATGTAAATTAGCA 57.730 30.769 0.00 0.00 35.60 3.49
222 223 8.394877 TGTTTTCATCGGTATGTAAATTAGCAG 58.605 33.333 0.00 0.00 35.60 4.24
223 224 8.609176 GTTTTCATCGGTATGTAAATTAGCAGA 58.391 33.333 0.00 0.00 35.60 4.26
224 225 8.902540 TTTCATCGGTATGTAAATTAGCAGAT 57.097 30.769 0.00 0.00 34.50 2.90
225 226 8.534333 TTCATCGGTATGTAAATTAGCAGATC 57.466 34.615 0.00 0.00 34.50 2.75
226 227 7.097192 TCATCGGTATGTAAATTAGCAGATCC 58.903 38.462 0.00 0.00 34.50 3.36
227 228 5.466819 TCGGTATGTAAATTAGCAGATCCG 58.533 41.667 0.00 0.00 35.35 4.18
269 270 2.173382 CGCCGCGCATATTTAGGC 59.827 61.111 8.75 9.39 44.00 3.93
270 271 2.561373 GCCGCGCATATTTAGGCC 59.439 61.111 8.75 0.00 41.81 5.19
271 272 2.860293 CCGCGCATATTTAGGCCG 59.140 61.111 8.75 0.00 0.00 6.13
272 273 2.173382 CGCGCATATTTAGGCCGC 59.827 61.111 8.75 0.00 32.42 6.53
274 275 2.173382 CGCATATTTAGGCCGCGC 59.827 61.111 0.00 0.00 39.43 6.86
275 276 2.317609 CGCATATTTAGGCCGCGCT 61.318 57.895 5.56 0.00 39.43 5.92
276 277 1.841663 CGCATATTTAGGCCGCGCTT 61.842 55.000 5.56 0.00 39.43 4.68
277 278 0.385974 GCATATTTAGGCCGCGCTTG 60.386 55.000 5.56 0.00 0.00 4.01
278 279 0.238289 CATATTTAGGCCGCGCTTGG 59.762 55.000 5.56 0.18 0.00 3.61
279 280 0.107831 ATATTTAGGCCGCGCTTGGA 59.892 50.000 5.56 0.00 0.00 3.53
280 281 0.107606 TATTTAGGCCGCGCTTGGAA 60.108 50.000 5.56 0.00 0.00 3.53
281 282 0.751643 ATTTAGGCCGCGCTTGGAAT 60.752 50.000 5.56 0.00 0.00 3.01
282 283 1.373590 TTTAGGCCGCGCTTGGAATC 61.374 55.000 5.56 0.00 0.00 2.52
286 287 3.864686 CCGCGCTTGGAATCGGTG 61.865 66.667 5.56 0.00 37.33 4.94
287 288 3.118454 CGCGCTTGGAATCGGTGT 61.118 61.111 5.56 0.00 0.00 4.16
288 289 1.807981 CGCGCTTGGAATCGGTGTA 60.808 57.895 5.56 0.00 0.00 2.90
289 290 1.355796 CGCGCTTGGAATCGGTGTAA 61.356 55.000 5.56 0.00 0.00 2.41
290 291 0.800012 GCGCTTGGAATCGGTGTAAA 59.200 50.000 0.00 0.00 0.00 2.01
291 292 1.465187 GCGCTTGGAATCGGTGTAAAC 60.465 52.381 0.00 0.00 0.00 2.01
292 293 1.801771 CGCTTGGAATCGGTGTAAACA 59.198 47.619 0.00 0.00 0.00 2.83
293 294 2.418628 CGCTTGGAATCGGTGTAAACAT 59.581 45.455 0.00 0.00 0.00 2.71
294 295 3.619483 CGCTTGGAATCGGTGTAAACATA 59.381 43.478 0.00 0.00 0.00 2.29
295 296 4.272504 CGCTTGGAATCGGTGTAAACATAT 59.727 41.667 0.00 0.00 0.00 1.78
296 297 5.464057 CGCTTGGAATCGGTGTAAACATATA 59.536 40.000 0.00 0.00 0.00 0.86
297 298 6.563381 CGCTTGGAATCGGTGTAAACATATAC 60.563 42.308 0.00 0.00 0.00 1.47
298 299 6.259167 GCTTGGAATCGGTGTAAACATATACA 59.741 38.462 0.00 0.00 33.52 2.29
299 300 7.201661 GCTTGGAATCGGTGTAAACATATACAA 60.202 37.037 0.00 0.00 37.52 2.41
300 301 7.780008 TGGAATCGGTGTAAACATATACAAG 57.220 36.000 0.00 0.00 37.52 3.16
301 302 7.332557 TGGAATCGGTGTAAACATATACAAGT 58.667 34.615 0.00 0.00 37.52 3.16
302 303 7.279090 TGGAATCGGTGTAAACATATACAAGTG 59.721 37.037 0.00 0.00 37.52 3.16
303 304 7.279313 GGAATCGGTGTAAACATATACAAGTGT 59.721 37.037 0.00 0.00 37.52 3.55
304 305 9.304731 GAATCGGTGTAAACATATACAAGTGTA 57.695 33.333 0.00 0.00 37.52 2.90
305 306 9.826574 AATCGGTGTAAACATATACAAGTGTAT 57.173 29.630 8.88 8.88 43.15 2.29
306 307 9.826574 ATCGGTGTAAACATATACAAGTGTATT 57.173 29.630 9.15 0.00 41.18 1.89
307 308 9.656040 TCGGTGTAAACATATACAAGTGTATTT 57.344 29.630 9.15 0.00 41.18 1.40
318 319 9.895138 ATATACAAGTGTATTTTTCTTACGGGT 57.105 29.630 9.15 0.00 41.18 5.28
319 320 6.308371 ACAAGTGTATTTTTCTTACGGGTG 57.692 37.500 0.00 0.00 0.00 4.61
320 321 5.824097 ACAAGTGTATTTTTCTTACGGGTGT 59.176 36.000 0.00 0.00 0.00 4.16
321 322 6.991531 ACAAGTGTATTTTTCTTACGGGTGTA 59.008 34.615 0.00 0.00 0.00 2.90
322 323 7.662669 ACAAGTGTATTTTTCTTACGGGTGTAT 59.337 33.333 0.00 0.00 0.00 2.29
323 324 7.838771 AGTGTATTTTTCTTACGGGTGTATC 57.161 36.000 0.00 0.00 0.00 2.24
324 325 7.618137 AGTGTATTTTTCTTACGGGTGTATCT 58.382 34.615 0.00 0.00 0.00 1.98
325 326 8.098912 AGTGTATTTTTCTTACGGGTGTATCTT 58.901 33.333 0.00 0.00 0.00 2.40
326 327 9.369904 GTGTATTTTTCTTACGGGTGTATCTTA 57.630 33.333 0.00 0.00 0.00 2.10
327 328 9.369904 TGTATTTTTCTTACGGGTGTATCTTAC 57.630 33.333 0.00 0.00 0.00 2.34
328 329 7.854557 ATTTTTCTTACGGGTGTATCTTACC 57.145 36.000 0.00 0.00 37.48 2.85
331 332 4.744316 CGGGTGTATCTTACCGGC 57.256 61.111 0.00 0.00 42.48 6.13
332 333 1.068585 CGGGTGTATCTTACCGGCC 59.931 63.158 0.00 0.00 42.48 6.13
333 334 1.678598 CGGGTGTATCTTACCGGCCA 61.679 60.000 0.00 0.00 42.48 5.36
334 335 0.106149 GGGTGTATCTTACCGGCCAG 59.894 60.000 0.00 0.00 39.14 4.85
336 337 1.117150 GTGTATCTTACCGGCCAGGA 58.883 55.000 18.74 0.00 45.00 3.86
337 338 1.068741 GTGTATCTTACCGGCCAGGAG 59.931 57.143 18.74 8.01 45.00 3.69
338 339 0.033642 GTATCTTACCGGCCAGGAGC 59.966 60.000 18.74 0.00 45.00 4.70
339 340 1.461091 TATCTTACCGGCCAGGAGCG 61.461 60.000 18.74 7.32 45.17 5.03
340 341 3.458163 CTTACCGGCCAGGAGCGA 61.458 66.667 18.74 0.72 45.17 4.93
341 342 2.762459 TTACCGGCCAGGAGCGAT 60.762 61.111 18.74 0.62 45.17 4.58
342 343 2.311688 CTTACCGGCCAGGAGCGATT 62.312 60.000 18.74 0.00 45.17 3.34
343 344 1.906105 TTACCGGCCAGGAGCGATTT 61.906 55.000 18.74 0.00 45.17 2.17
344 345 2.587322 TACCGGCCAGGAGCGATTTG 62.587 60.000 18.74 0.00 45.17 2.32
345 346 3.880846 CGGCCAGGAGCGATTTGC 61.881 66.667 2.24 0.00 45.17 3.68
354 355 3.693411 GCGATTTGCAGGGGGAAA 58.307 55.556 0.00 0.00 45.45 3.13
355 356 2.201927 GCGATTTGCAGGGGGAAAT 58.798 52.632 0.00 0.00 46.17 2.17
356 357 0.179103 GCGATTTGCAGGGGGAAATG 60.179 55.000 0.00 0.00 43.93 2.32
357 358 1.473258 CGATTTGCAGGGGGAAATGA 58.527 50.000 0.00 0.00 43.93 2.57
358 359 1.824230 CGATTTGCAGGGGGAAATGAA 59.176 47.619 0.00 0.00 43.93 2.57
359 360 2.233431 CGATTTGCAGGGGGAAATGAAA 59.767 45.455 0.00 0.00 43.93 2.69
360 361 3.306641 CGATTTGCAGGGGGAAATGAAAA 60.307 43.478 0.00 0.00 43.93 2.29
361 362 3.483808 TTTGCAGGGGGAAATGAAAAC 57.516 42.857 0.00 0.00 28.60 2.43
362 363 0.965439 TGCAGGGGGAAATGAAAACG 59.035 50.000 0.00 0.00 0.00 3.60
363 364 1.253100 GCAGGGGGAAATGAAAACGA 58.747 50.000 0.00 0.00 0.00 3.85
364 365 1.067846 GCAGGGGGAAATGAAAACGAC 60.068 52.381 0.00 0.00 0.00 4.34
365 366 1.199097 CAGGGGGAAATGAAAACGACG 59.801 52.381 0.00 0.00 0.00 5.12
366 367 0.524414 GGGGGAAATGAAAACGACGG 59.476 55.000 0.00 0.00 0.00 4.79
367 368 1.525941 GGGGAAATGAAAACGACGGA 58.474 50.000 0.00 0.00 0.00 4.69
368 369 2.089201 GGGGAAATGAAAACGACGGAT 58.911 47.619 0.00 0.00 0.00 4.18
369 370 2.159435 GGGGAAATGAAAACGACGGATG 60.159 50.000 0.00 0.00 0.00 3.51
370 371 2.159435 GGGAAATGAAAACGACGGATGG 60.159 50.000 0.00 0.00 0.00 3.51
371 372 2.486592 GGAAATGAAAACGACGGATGGT 59.513 45.455 0.00 0.00 0.00 3.55
372 373 3.488489 GAAATGAAAACGACGGATGGTG 58.512 45.455 0.00 0.00 0.00 4.17
373 374 1.448985 ATGAAAACGACGGATGGTGG 58.551 50.000 0.00 0.00 0.00 4.61
374 375 1.231958 TGAAAACGACGGATGGTGGC 61.232 55.000 0.00 0.00 0.00 5.01
375 376 1.918868 GAAAACGACGGATGGTGGCC 61.919 60.000 0.00 0.00 0.00 5.36
376 377 2.406002 AAAACGACGGATGGTGGCCT 62.406 55.000 3.32 0.00 0.00 5.19
377 378 3.605749 AACGACGGATGGTGGCCTG 62.606 63.158 3.32 0.00 0.00 4.85
378 379 4.082523 CGACGGATGGTGGCCTGT 62.083 66.667 3.32 0.00 0.00 4.00
379 380 2.717044 CGACGGATGGTGGCCTGTA 61.717 63.158 3.32 0.00 0.00 2.74
380 381 1.600107 GACGGATGGTGGCCTGTAA 59.400 57.895 3.32 0.00 0.00 2.41
381 382 0.743345 GACGGATGGTGGCCTGTAAC 60.743 60.000 3.32 0.00 0.00 2.50
382 383 1.198759 ACGGATGGTGGCCTGTAACT 61.199 55.000 3.32 0.00 0.00 2.24
383 384 0.035439 CGGATGGTGGCCTGTAACTT 60.035 55.000 3.32 0.00 0.00 2.66
384 385 1.613255 CGGATGGTGGCCTGTAACTTT 60.613 52.381 3.32 0.00 0.00 2.66
385 386 2.525368 GGATGGTGGCCTGTAACTTTT 58.475 47.619 3.32 0.00 0.00 2.27
386 387 3.692690 GGATGGTGGCCTGTAACTTTTA 58.307 45.455 3.32 0.00 0.00 1.52
387 388 3.442625 GGATGGTGGCCTGTAACTTTTAC 59.557 47.826 3.32 0.00 0.00 2.01
388 389 3.579534 TGGTGGCCTGTAACTTTTACA 57.420 42.857 3.32 0.00 0.00 2.41
389 390 3.899726 TGGTGGCCTGTAACTTTTACAA 58.100 40.909 3.32 0.00 0.00 2.41
390 391 3.886505 TGGTGGCCTGTAACTTTTACAAG 59.113 43.478 3.32 0.00 35.92 3.16
391 392 3.305131 GGTGGCCTGTAACTTTTACAAGC 60.305 47.826 3.32 10.06 34.94 4.01
392 393 2.550606 TGGCCTGTAACTTTTACAAGCG 59.449 45.455 3.32 0.56 36.14 4.68
393 394 2.551032 GGCCTGTAACTTTTACAAGCGT 59.449 45.455 11.61 0.00 36.14 5.07
394 395 3.747529 GGCCTGTAACTTTTACAAGCGTA 59.252 43.478 11.61 0.00 36.14 4.42
395 396 4.393990 GGCCTGTAACTTTTACAAGCGTAT 59.606 41.667 11.61 0.00 36.14 3.06
396 397 5.106436 GGCCTGTAACTTTTACAAGCGTATT 60.106 40.000 11.61 0.00 36.14 1.89
397 398 6.019762 GCCTGTAACTTTTACAAGCGTATTC 58.980 40.000 4.38 0.00 32.57 1.75
398 399 6.347888 GCCTGTAACTTTTACAAGCGTATTCA 60.348 38.462 4.38 0.00 32.57 2.57
399 400 7.577979 CCTGTAACTTTTACAAGCGTATTCAA 58.422 34.615 0.74 0.00 32.57 2.69
400 401 8.071368 CCTGTAACTTTTACAAGCGTATTCAAA 58.929 33.333 0.74 0.00 32.57 2.69
401 402 8.996988 TGTAACTTTTACAAGCGTATTCAAAG 57.003 30.769 0.00 0.00 32.66 2.77
402 403 8.614346 TGTAACTTTTACAAGCGTATTCAAAGT 58.386 29.630 0.00 0.00 37.60 2.66
405 406 8.597662 ACTTTTACAAGCGTATTCAAAGTAGA 57.402 30.769 0.00 0.00 35.71 2.59
406 407 9.048446 ACTTTTACAAGCGTATTCAAAGTAGAA 57.952 29.630 0.00 0.00 35.71 2.10
407 408 9.872757 CTTTTACAAGCGTATTCAAAGTAGAAA 57.127 29.630 0.00 0.00 0.00 2.52
408 409 9.654417 TTTTACAAGCGTATTCAAAGTAGAAAC 57.346 29.630 0.00 0.00 0.00 2.78
409 410 5.912528 ACAAGCGTATTCAAAGTAGAAACG 58.087 37.500 0.00 0.00 36.28 3.60
410 411 5.693104 ACAAGCGTATTCAAAGTAGAAACGA 59.307 36.000 0.00 0.00 35.78 3.85
411 412 5.758570 AGCGTATTCAAAGTAGAAACGAC 57.241 39.130 0.00 0.00 35.78 4.34
412 413 5.224888 AGCGTATTCAAAGTAGAAACGACA 58.775 37.500 0.00 0.00 35.78 4.35
413 414 5.867716 AGCGTATTCAAAGTAGAAACGACAT 59.132 36.000 0.00 0.00 35.78 3.06
414 415 6.367969 AGCGTATTCAAAGTAGAAACGACATT 59.632 34.615 0.00 0.00 35.78 2.71
415 416 6.677411 GCGTATTCAAAGTAGAAACGACATTC 59.323 38.462 0.00 0.00 35.78 2.67
416 417 7.171434 CGTATTCAAAGTAGAAACGACATTCC 58.829 38.462 0.00 0.00 35.78 3.01
417 418 7.148705 CGTATTCAAAGTAGAAACGACATTCCA 60.149 37.037 0.00 0.00 35.78 3.53
418 419 6.928979 TTCAAAGTAGAAACGACATTCCAA 57.071 33.333 0.00 0.00 0.00 3.53
419 420 6.928979 TCAAAGTAGAAACGACATTCCAAA 57.071 33.333 0.00 0.00 0.00 3.28
420 421 6.721321 TCAAAGTAGAAACGACATTCCAAAC 58.279 36.000 0.00 0.00 0.00 2.93
421 422 6.316640 TCAAAGTAGAAACGACATTCCAAACA 59.683 34.615 0.00 0.00 0.00 2.83
422 423 5.924475 AGTAGAAACGACATTCCAAACAG 57.076 39.130 0.00 0.00 0.00 3.16
423 424 4.755123 AGTAGAAACGACATTCCAAACAGG 59.245 41.667 0.00 0.00 39.47 4.00
424 425 2.884639 AGAAACGACATTCCAAACAGGG 59.115 45.455 0.00 0.00 38.24 4.45
425 426 0.958822 AACGACATTCCAAACAGGGC 59.041 50.000 0.00 0.00 38.24 5.19
426 427 0.893727 ACGACATTCCAAACAGGGCC 60.894 55.000 0.00 0.00 38.24 5.80
551 552 2.671963 GAAGCCGAACCACCCCAC 60.672 66.667 0.00 0.00 0.00 4.61
584 585 3.622826 CCGAACGACAGGGTGGGT 61.623 66.667 0.00 0.00 0.00 4.51
642 643 2.003548 GCTCCATCCTCCCCACCTT 61.004 63.158 0.00 0.00 0.00 3.50
643 644 1.988982 GCTCCATCCTCCCCACCTTC 61.989 65.000 0.00 0.00 0.00 3.46
644 645 1.307866 TCCATCCTCCCCACCTTCC 60.308 63.158 0.00 0.00 0.00 3.46
645 646 2.386935 CCATCCTCCCCACCTTCCC 61.387 68.421 0.00 0.00 0.00 3.97
646 647 2.044620 ATCCTCCCCACCTTCCCC 59.955 66.667 0.00 0.00 0.00 4.81
647 648 2.591821 ATCCTCCCCACCTTCCCCT 61.592 63.158 0.00 0.00 0.00 4.79
688 689 0.379669 CCTGATCCGAATGCTTGTGC 59.620 55.000 0.00 0.00 40.20 4.57
762 763 0.591659 GGGGTTCTCGTTTTGAGTGC 59.408 55.000 0.00 0.00 45.46 4.40
926 927 2.270352 TGGTTCTGCCAAATCGAACT 57.730 45.000 0.00 0.00 45.94 3.01
1020 1021 5.171874 TGTTTCGCGTGTATATTATCGACAC 59.828 40.000 5.77 0.00 40.07 3.67
1592 1598 2.852449 TGTTATCGGCTTGTGTTTGGA 58.148 42.857 0.00 0.00 0.00 3.53
1703 1886 5.703592 AGATTGCGTGGTGTTAACAGAAATA 59.296 36.000 8.98 0.00 0.00 1.40
1704 1887 5.752892 TTGCGTGGTGTTAACAGAAATAA 57.247 34.783 8.98 0.00 0.00 1.40
1705 1888 5.752892 TGCGTGGTGTTAACAGAAATAAA 57.247 34.783 8.98 0.00 0.00 1.40
1706 1889 5.512473 TGCGTGGTGTTAACAGAAATAAAC 58.488 37.500 8.98 0.00 0.00 2.01
1839 2022 3.011818 TGGTAGATCACTTTGCATGCTG 58.988 45.455 20.33 8.87 0.00 4.41
1910 2093 5.064834 GGTGCTTTATAGTTGGACAAGTAGC 59.935 44.000 5.88 5.81 30.56 3.58
1942 2177 4.022849 AGCCAATGCAAACTGAGAAGTTAC 60.023 41.667 0.00 0.00 41.13 2.50
2025 2260 1.272490 TCAAGGCAGACCAAGAGTACG 59.728 52.381 0.00 0.00 39.06 3.67
2087 2322 5.673337 TCTGTAGTTGCTCACAATGTTTC 57.327 39.130 0.00 0.00 38.27 2.78
2481 2716 2.661866 GTCTTGTGTGGCGCGAGT 60.662 61.111 12.10 0.00 0.00 4.18
2482 2717 2.661537 TCTTGTGTGGCGCGAGTG 60.662 61.111 12.10 0.00 0.00 3.51
2517 2752 7.568349 AGACATTCTGAGGTAAATATTGCTCA 58.432 34.615 0.00 0.00 0.00 4.26
3004 3301 8.507524 AGTTATCTTGGTATCTAAAAGTTGGC 57.492 34.615 0.00 0.00 0.00 4.52
3049 3346 4.134563 GGTTCATTCCGTGCCAGTAATAT 58.865 43.478 0.00 0.00 0.00 1.28
3125 3422 1.202973 CGTCGATCTACAGCCGCAAG 61.203 60.000 0.00 0.00 0.00 4.01
3167 3464 2.813754 CACCTTCACATTGGTCGTCATT 59.186 45.455 0.00 0.00 33.75 2.57
3181 3478 4.153986 GTCGTCATTGCATCAAACTTCTG 58.846 43.478 0.00 0.00 0.00 3.02
3269 3568 0.326927 TTTTCCGGCCTAGAAGGGTG 59.673 55.000 0.00 0.00 35.37 4.61
3272 3571 1.382146 CCGGCCTAGAAGGGTGGTA 60.382 63.158 0.00 0.00 35.37 3.25
3273 3572 0.979187 CCGGCCTAGAAGGGTGGTAA 60.979 60.000 0.00 0.00 35.37 2.85
3299 3598 1.618343 TGCTCTGAATCGGTCTCAACA 59.382 47.619 0.00 0.00 0.00 3.33
3331 3630 1.089920 CCGAGCAGATTCACCAAAGG 58.910 55.000 0.00 0.00 0.00 3.11
3516 3819 0.345146 TGATAGACCCATCCCACCCA 59.655 55.000 0.00 0.00 0.00 4.51
3587 3891 6.723977 TGAAGCCCTTTGTTTTGTAGGAATAT 59.276 34.615 0.00 0.00 0.00 1.28
3827 4273 3.797039 TGGCAAGACATATCAGTGTAGC 58.203 45.455 0.00 0.00 31.16 3.58
3828 4274 3.452264 TGGCAAGACATATCAGTGTAGCT 59.548 43.478 0.00 0.00 31.16 3.32
3829 4275 4.054671 GGCAAGACATATCAGTGTAGCTC 58.945 47.826 0.00 0.00 31.16 4.09
3830 4276 4.202202 GGCAAGACATATCAGTGTAGCTCT 60.202 45.833 0.00 0.00 31.16 4.09
3831 4277 4.744137 GCAAGACATATCAGTGTAGCTCTG 59.256 45.833 0.00 0.00 31.16 3.35
3859 4305 8.655970 TGATGCGTTTATATTATGTATGTCTGC 58.344 33.333 0.00 0.00 0.00 4.26
3870 4316 7.543947 TTATGTATGTCTGCTCTTGTGATTG 57.456 36.000 0.00 0.00 0.00 2.67
3884 4330 9.604626 GCTCTTGTGATTGAGTTTATATATTGC 57.395 33.333 0.00 0.00 33.22 3.56
3902 4348 4.713824 TTGCGATTATATACTCCCTCCG 57.286 45.455 0.00 0.00 0.00 4.63
3903 4349 3.693807 TGCGATTATATACTCCCTCCGT 58.306 45.455 0.00 0.00 0.00 4.69
3904 4350 4.084287 TGCGATTATATACTCCCTCCGTT 58.916 43.478 0.00 0.00 0.00 4.44
3905 4351 4.157289 TGCGATTATATACTCCCTCCGTTC 59.843 45.833 0.00 0.00 0.00 3.95
3906 4352 4.439837 GCGATTATATACTCCCTCCGTTCC 60.440 50.000 0.00 0.00 0.00 3.62
3907 4353 4.201891 CGATTATATACTCCCTCCGTTCCG 60.202 50.000 0.00 0.00 0.00 4.30
3908 4354 2.965671 ATATACTCCCTCCGTTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
3909 4355 2.734755 TATACTCCCTCCGTTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
3910 4356 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
3911 4357 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
3912 4358 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3913 4359 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
3914 4360 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
3915 4361 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
3916 4362 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3917 4363 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3918 4364 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3919 4365 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
3920 4366 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
3921 4367 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
3922 4368 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
3923 4369 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
3924 4370 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
3925 4371 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
3926 4372 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
3927 4373 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
3928 4374 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
3929 4375 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
3930 4376 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
3931 4377 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
3932 4378 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
3933 4379 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
3934 4380 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
3935 4381 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
3936 4382 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
3937 4383 3.005791 TGTCGCAGGTATGGATGTATCTG 59.994 47.826 0.00 0.00 36.18 2.90
3938 4384 2.562738 TCGCAGGTATGGATGTATCTGG 59.437 50.000 0.00 0.00 34.16 3.86
3939 4385 2.562738 CGCAGGTATGGATGTATCTGGA 59.437 50.000 0.00 0.00 34.16 3.86
3940 4386 3.196469 CGCAGGTATGGATGTATCTGGAT 59.804 47.826 0.00 0.00 34.16 3.41
3941 4387 4.511527 GCAGGTATGGATGTATCTGGATG 58.488 47.826 0.00 0.00 34.16 3.51
3942 4388 4.019860 GCAGGTATGGATGTATCTGGATGT 60.020 45.833 0.00 0.00 34.16 3.06
3943 4389 5.187772 GCAGGTATGGATGTATCTGGATGTA 59.812 44.000 0.00 0.00 34.16 2.29
3944 4390 6.126940 GCAGGTATGGATGTATCTGGATGTAT 60.127 42.308 0.00 0.00 34.16 2.29
3945 4391 7.582242 GCAGGTATGGATGTATCTGGATGTATT 60.582 40.741 0.00 0.00 34.16 1.89
3946 4392 8.324306 CAGGTATGGATGTATCTGGATGTATTT 58.676 37.037 0.00 0.00 30.73 1.40
3947 4393 8.894592 AGGTATGGATGTATCTGGATGTATTTT 58.105 33.333 0.00 0.00 0.00 1.82
3952 4398 9.778741 TGGATGTATCTGGATGTATTTTAGTTC 57.221 33.333 0.00 0.00 0.00 3.01
3972 4418 7.251704 AGTTCTAAATACATCCATTTCTGCG 57.748 36.000 0.00 0.00 30.84 5.18
3973 4419 7.047891 AGTTCTAAATACATCCATTTCTGCGA 58.952 34.615 0.00 0.00 30.84 5.10
3974 4420 6.844696 TCTAAATACATCCATTTCTGCGAC 57.155 37.500 0.00 0.00 30.84 5.19
3975 4421 4.536364 AAATACATCCATTTCTGCGACG 57.464 40.909 0.00 0.00 0.00 5.12
3976 4422 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
3977 4423 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
3978 4424 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
3979 4425 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
3980 4426 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
3981 4427 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
3982 4428 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
3983 4429 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
3984 4430 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
3985 4431 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
3986 4432 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
3987 4433 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
3988 4434 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
3989 4435 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
3990 4436 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
3991 4437 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
3992 4438 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3993 4439 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3994 4440 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3995 4441 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
3996 4442 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
3997 4443 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
3998 4444 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
4444 4896 2.347114 CGGTGTCCAGTGCATCCA 59.653 61.111 0.00 0.00 0.00 3.41
4489 4941 0.816825 CAAGACGGCCATGGATGAGG 60.817 60.000 18.40 0.89 0.00 3.86
4567 5019 4.158025 ACGAATCACGACCTCTCATTTACT 59.842 41.667 0.00 0.00 45.77 2.24
4611 5063 6.156519 GTGTTTATTGGAAAACCCTGATGAC 58.843 40.000 0.00 0.00 38.35 3.06
4672 5124 1.104577 GTTTGCCGAGTTGGTTGGGA 61.105 55.000 0.00 0.00 41.21 4.37
4733 5185 8.351461 AGAAGTAGAAGTACTGGTAAATATCGC 58.649 37.037 0.00 0.00 39.60 4.58
4734 5186 7.820578 AGTAGAAGTACTGGTAAATATCGCT 57.179 36.000 0.00 0.00 38.14 4.93
4735 5187 7.873910 AGTAGAAGTACTGGTAAATATCGCTC 58.126 38.462 0.00 0.00 38.14 5.03
4736 5188 5.759963 AGAAGTACTGGTAAATATCGCTCG 58.240 41.667 0.00 0.00 0.00 5.03
4737 5189 5.298777 AGAAGTACTGGTAAATATCGCTCGT 59.701 40.000 0.00 0.00 0.00 4.18
4738 5190 4.856664 AGTACTGGTAAATATCGCTCGTG 58.143 43.478 0.00 0.00 0.00 4.35
4739 5191 4.577693 AGTACTGGTAAATATCGCTCGTGA 59.422 41.667 0.00 0.00 0.00 4.35
4740 5192 3.703420 ACTGGTAAATATCGCTCGTGAC 58.297 45.455 0.00 0.00 0.00 3.67
4741 5193 3.129813 ACTGGTAAATATCGCTCGTGACA 59.870 43.478 0.00 0.00 0.00 3.58
4742 5194 3.441163 TGGTAAATATCGCTCGTGACAC 58.559 45.455 0.00 0.00 0.00 3.67
4743 5195 2.793232 GGTAAATATCGCTCGTGACACC 59.207 50.000 0.00 0.00 0.00 4.16
4744 5196 1.556564 AAATATCGCTCGTGACACCG 58.443 50.000 0.00 0.00 0.00 4.94
4755 5207 2.357323 TCGTGACACCGTTTAGTACACA 59.643 45.455 0.00 0.00 0.00 3.72
4766 5218 2.537639 TAGTACACACACATCGCTCG 57.462 50.000 0.00 0.00 0.00 5.03
4767 5219 0.596577 AGTACACACACATCGCTCGT 59.403 50.000 0.00 0.00 0.00 4.18
4768 5220 0.708370 GTACACACACATCGCTCGTG 59.292 55.000 0.00 0.00 40.32 4.35
4769 5221 0.594110 TACACACACATCGCTCGTGA 59.406 50.000 5.81 0.00 37.80 4.35
4770 5222 0.939577 ACACACACATCGCTCGTGAC 60.940 55.000 5.81 0.00 37.80 3.67
4771 5223 0.939106 CACACACATCGCTCGTGACA 60.939 55.000 5.81 0.00 37.80 3.58
4772 5224 0.939577 ACACACATCGCTCGTGACAC 60.940 55.000 0.00 0.00 37.80 3.67
4773 5225 1.729484 ACACATCGCTCGTGACACG 60.729 57.895 21.88 21.88 44.19 4.49
4774 5226 2.126463 ACATCGCTCGTGACACGG 60.126 61.111 26.55 17.99 42.81 4.94
4775 5227 3.545481 CATCGCTCGTGACACGGC 61.545 66.667 26.55 24.63 42.81 5.68
4807 5259 5.579904 CCGCTGTATATTCAGGATCTTGATG 59.420 44.000 8.52 0.00 36.12 3.07
4888 5340 4.839796 CGTATTGAACGTTTTGTCCTTGT 58.160 39.130 0.46 0.00 46.72 3.16
4893 5345 4.872664 TGAACGTTTTGTCCTTGTGTTTT 58.127 34.783 0.46 0.00 0.00 2.43
4914 5366 9.974980 TGTTTTTAAGATACACTTGGAATTTCC 57.025 29.630 8.59 8.59 39.38 3.13
4918 5370 4.906618 AGATACACTTGGAATTTCCGTGT 58.093 39.130 23.75 23.75 41.68 4.49
4931 5383 6.747280 GGAATTTCCGTGTATTTCATGACTTG 59.253 38.462 0.00 0.00 35.23 3.16
5245 5821 2.026641 CTCAAACCCAGCCCATATGTG 58.973 52.381 1.24 0.00 0.00 3.21
5280 5858 1.134560 GTGGAGTGGACATAGTCGGAC 59.865 57.143 0.00 0.00 32.65 4.79
5297 5875 2.967076 CGCGCCGCCACATTAGAT 60.967 61.111 2.28 0.00 0.00 1.98
5340 5918 4.343323 CCACGCCCACCATGACCA 62.343 66.667 0.00 0.00 0.00 4.02
5364 5944 0.171455 CCTAGCTCACTCGTTCGCTT 59.829 55.000 0.00 0.00 34.14 4.68
5402 5982 1.019650 ACTCCCATCCACTACCCTCT 58.980 55.000 0.00 0.00 0.00 3.69
5459 6039 2.776526 ACAGCAAGGTGGACCCCA 60.777 61.111 4.16 0.00 36.42 4.96
5480 6060 2.590575 ACTGGGACGCGTTGTTGG 60.591 61.111 15.53 5.91 0.00 3.77
5506 6086 2.449031 AATTGAGCGACGCCAGGACA 62.449 55.000 17.79 6.69 0.00 4.02
5511 6091 2.738521 CGACGCCAGGACAACCAG 60.739 66.667 0.00 0.00 38.94 4.00
5525 6107 2.181975 CAACCAGAAATGCCCTCCATT 58.818 47.619 0.00 0.00 45.90 3.16
5526 6108 1.856629 ACCAGAAATGCCCTCCATTG 58.143 50.000 0.00 0.00 43.22 2.82
5530 6112 1.642762 AGAAATGCCCTCCATTGGTCT 59.357 47.619 1.86 0.00 43.22 3.85
5537 6119 4.776322 TCCATTGGTCTGCGCCCG 62.776 66.667 4.18 0.00 0.00 6.13
5571 6156 2.685380 CCCTTCTCCTGGTCGGCT 60.685 66.667 0.00 0.00 0.00 5.52
5576 6161 3.522731 CTCCTGGTCGGCTCTCGG 61.523 72.222 0.00 0.00 39.77 4.63
5592 6177 0.528466 TCGGTGCTCATTCTCGCATC 60.528 55.000 0.00 0.00 38.56 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.489771 GTCCCCCACCCTGCATCG 62.490 72.222 0.00 0.00 0.00 3.84
10 11 3.017581 AGTCCCCCACCCTGCATC 61.018 66.667 0.00 0.00 0.00 3.91
11 12 3.017581 GAGTCCCCCACCCTGCAT 61.018 66.667 0.00 0.00 0.00 3.96
12 13 4.270153 AGAGTCCCCCACCCTGCA 62.270 66.667 0.00 0.00 0.00 4.41
13 14 3.403558 GAGAGTCCCCCACCCTGC 61.404 72.222 0.00 0.00 0.00 4.85
14 15 2.689034 GGAGAGTCCCCCACCCTG 60.689 72.222 0.00 0.00 0.00 4.45
15 16 3.208592 TGGAGAGTCCCCCACCCT 61.209 66.667 0.00 0.00 35.03 4.34
16 17 2.689034 CTGGAGAGTCCCCCACCC 60.689 72.222 0.00 0.00 35.03 4.61
17 18 1.687493 CTCTGGAGAGTCCCCCACC 60.687 68.421 0.00 0.00 35.03 4.61
18 19 1.687493 CCTCTGGAGAGTCCCCCAC 60.687 68.421 3.03 0.00 40.48 4.61
19 20 2.780693 CCTCTGGAGAGTCCCCCA 59.219 66.667 3.03 2.32 40.48 4.96
20 21 2.766229 GCCTCTGGAGAGTCCCCC 60.766 72.222 3.03 0.00 40.48 5.40
21 22 1.950748 TAGGCCTCTGGAGAGTCCCC 61.951 65.000 9.68 0.00 40.90 4.81
22 23 0.469144 CTAGGCCTCTGGAGAGTCCC 60.469 65.000 9.68 2.02 40.90 4.46
23 24 0.469144 CCTAGGCCTCTGGAGAGTCC 60.469 65.000 9.68 0.00 40.33 3.85
24 25 1.112916 GCCTAGGCCTCTGGAGAGTC 61.113 65.000 24.19 6.29 40.48 3.36
25 26 1.075600 GCCTAGGCCTCTGGAGAGT 60.076 63.158 24.19 0.00 40.48 3.24
26 27 2.199652 CGCCTAGGCCTCTGGAGAG 61.200 68.421 28.09 9.67 41.71 3.20
27 28 2.123683 CGCCTAGGCCTCTGGAGA 60.124 66.667 28.09 0.00 37.98 3.71
28 29 3.230245 CCGCCTAGGCCTCTGGAG 61.230 72.222 28.09 20.84 37.98 3.86
29 30 4.860881 CCCGCCTAGGCCTCTGGA 62.861 72.222 28.09 0.64 39.21 3.86
31 32 3.854669 CACCCGCCTAGGCCTCTG 61.855 72.222 28.09 15.53 39.21 3.35
111 112 4.840005 CTTCTCCTTCCCCGCCGC 62.840 72.222 0.00 0.00 0.00 6.53
112 113 4.162690 CCTTCTCCTTCCCCGCCG 62.163 72.222 0.00 0.00 0.00 6.46
113 114 3.798511 CCCTTCTCCTTCCCCGCC 61.799 72.222 0.00 0.00 0.00 6.13
114 115 3.798511 CCCCTTCTCCTTCCCCGC 61.799 72.222 0.00 0.00 0.00 6.13
115 116 2.040606 TCCCCTTCTCCTTCCCCG 59.959 66.667 0.00 0.00 0.00 5.73
116 117 1.694525 CCTCCCCTTCTCCTTCCCC 60.695 68.421 0.00 0.00 0.00 4.81
117 118 1.083141 ACCTCCCCTTCTCCTTCCC 59.917 63.158 0.00 0.00 0.00 3.97
118 119 1.275421 CCACCTCCCCTTCTCCTTCC 61.275 65.000 0.00 0.00 0.00 3.46
119 120 1.275421 CCCACCTCCCCTTCTCCTTC 61.275 65.000 0.00 0.00 0.00 3.46
120 121 1.229984 CCCACCTCCCCTTCTCCTT 60.230 63.158 0.00 0.00 0.00 3.36
121 122 2.456840 CCCACCTCCCCTTCTCCT 59.543 66.667 0.00 0.00 0.00 3.69
122 123 2.692741 CCCCACCTCCCCTTCTCC 60.693 72.222 0.00 0.00 0.00 3.71
123 124 1.996187 GTCCCCACCTCCCCTTCTC 60.996 68.421 0.00 0.00 0.00 2.87
124 125 2.125225 GTCCCCACCTCCCCTTCT 59.875 66.667 0.00 0.00 0.00 2.85
125 126 3.015753 GGTCCCCACCTCCCCTTC 61.016 72.222 0.00 0.00 40.00 3.46
126 127 4.695791 GGGTCCCCACCTCCCCTT 62.696 72.222 0.00 0.00 43.22 3.95
165 166 4.180946 CACTCTCGGGCGACTCGG 62.181 72.222 0.00 0.00 0.00 4.63
166 167 4.180946 CCACTCTCGGGCGACTCG 62.181 72.222 0.00 0.00 0.00 4.18
167 168 2.122167 ATCCACTCTCGGGCGACTC 61.122 63.158 0.00 0.00 0.00 3.36
168 169 2.043852 ATCCACTCTCGGGCGACT 60.044 61.111 0.00 0.00 0.00 4.18
169 170 1.945354 TTCATCCACTCTCGGGCGAC 61.945 60.000 0.00 0.00 0.00 5.19
170 171 1.254975 TTTCATCCACTCTCGGGCGA 61.255 55.000 0.00 0.00 0.00 5.54
171 172 0.807667 CTTTCATCCACTCTCGGGCG 60.808 60.000 0.00 0.00 0.00 6.13
172 173 1.092345 GCTTTCATCCACTCTCGGGC 61.092 60.000 0.00 0.00 0.00 6.13
173 174 0.807667 CGCTTTCATCCACTCTCGGG 60.808 60.000 0.00 0.00 0.00 5.14
174 175 0.173481 TCGCTTTCATCCACTCTCGG 59.827 55.000 0.00 0.00 0.00 4.63
175 176 1.996292 TTCGCTTTCATCCACTCTCG 58.004 50.000 0.00 0.00 0.00 4.04
176 177 3.686726 ACAATTCGCTTTCATCCACTCTC 59.313 43.478 0.00 0.00 0.00 3.20
177 178 3.679389 ACAATTCGCTTTCATCCACTCT 58.321 40.909 0.00 0.00 0.00 3.24
178 179 4.425577 AACAATTCGCTTTCATCCACTC 57.574 40.909 0.00 0.00 0.00 3.51
179 180 4.853924 AAACAATTCGCTTTCATCCACT 57.146 36.364 0.00 0.00 0.00 4.00
180 181 4.981674 TGAAAACAATTCGCTTTCATCCAC 59.018 37.500 3.21 0.00 35.32 4.02
181 182 5.193663 TGAAAACAATTCGCTTTCATCCA 57.806 34.783 3.21 0.00 35.32 3.41
185 186 4.225984 CCGATGAAAACAATTCGCTTTCA 58.774 39.130 8.00 8.00 42.34 2.69
186 187 4.226761 ACCGATGAAAACAATTCGCTTTC 58.773 39.130 0.00 0.00 31.53 2.62
187 188 4.237349 ACCGATGAAAACAATTCGCTTT 57.763 36.364 0.00 0.00 0.00 3.51
188 189 3.915437 ACCGATGAAAACAATTCGCTT 57.085 38.095 0.00 0.00 0.00 4.68
189 190 4.394920 ACATACCGATGAAAACAATTCGCT 59.605 37.500 0.00 0.00 36.48 4.93
190 191 4.658071 ACATACCGATGAAAACAATTCGC 58.342 39.130 0.00 0.00 36.48 4.70
191 192 8.835467 ATTTACATACCGATGAAAACAATTCG 57.165 30.769 0.00 0.00 36.48 3.34
194 195 9.730420 GCTAATTTACATACCGATGAAAACAAT 57.270 29.630 0.00 0.00 36.48 2.71
195 196 8.731605 TGCTAATTTACATACCGATGAAAACAA 58.268 29.630 0.00 0.00 36.48 2.83
196 197 8.270080 TGCTAATTTACATACCGATGAAAACA 57.730 30.769 0.00 0.00 36.48 2.83
197 198 8.609176 TCTGCTAATTTACATACCGATGAAAAC 58.391 33.333 0.00 0.00 36.48 2.43
198 199 8.725405 TCTGCTAATTTACATACCGATGAAAA 57.275 30.769 0.00 0.00 36.48 2.29
199 200 8.902540 ATCTGCTAATTTACATACCGATGAAA 57.097 30.769 0.00 0.00 36.48 2.69
200 201 7.602644 GGATCTGCTAATTTACATACCGATGAA 59.397 37.037 0.00 0.00 36.48 2.57
201 202 7.097192 GGATCTGCTAATTTACATACCGATGA 58.903 38.462 0.00 0.00 36.48 2.92
202 203 6.035005 CGGATCTGCTAATTTACATACCGATG 59.965 42.308 0.00 0.00 38.09 3.84
203 204 6.071560 TCGGATCTGCTAATTTACATACCGAT 60.072 38.462 0.00 0.00 39.48 4.18
204 205 5.242171 TCGGATCTGCTAATTTACATACCGA 59.758 40.000 0.00 0.00 41.49 4.69
205 206 5.466819 TCGGATCTGCTAATTTACATACCG 58.533 41.667 0.00 0.00 37.37 4.02
206 207 7.724305 TTTCGGATCTGCTAATTTACATACC 57.276 36.000 0.00 0.00 0.00 2.73
207 208 9.813080 GAATTTCGGATCTGCTAATTTACATAC 57.187 33.333 12.75 1.03 0.00 2.39
208 209 9.554395 TGAATTTCGGATCTGCTAATTTACATA 57.446 29.630 12.75 1.23 0.00 2.29
209 210 8.450578 TGAATTTCGGATCTGCTAATTTACAT 57.549 30.769 12.75 0.00 0.00 2.29
210 211 7.857734 TGAATTTCGGATCTGCTAATTTACA 57.142 32.000 12.75 7.22 0.00 2.41
211 212 9.010366 GTTTGAATTTCGGATCTGCTAATTTAC 57.990 33.333 12.75 9.41 0.00 2.01
212 213 8.188139 GGTTTGAATTTCGGATCTGCTAATTTA 58.812 33.333 12.75 8.27 0.00 1.40
213 214 7.035612 GGTTTGAATTTCGGATCTGCTAATTT 58.964 34.615 12.75 1.25 0.00 1.82
214 215 6.405842 GGGTTTGAATTTCGGATCTGCTAATT 60.406 38.462 11.84 11.84 0.00 1.40
215 216 5.067805 GGGTTTGAATTTCGGATCTGCTAAT 59.932 40.000 0.00 0.00 0.00 1.73
216 217 4.398044 GGGTTTGAATTTCGGATCTGCTAA 59.602 41.667 0.00 0.00 0.00 3.09
217 218 3.945285 GGGTTTGAATTTCGGATCTGCTA 59.055 43.478 0.00 0.00 0.00 3.49
218 219 2.755103 GGGTTTGAATTTCGGATCTGCT 59.245 45.455 0.00 0.00 0.00 4.24
219 220 2.477863 CGGGTTTGAATTTCGGATCTGC 60.478 50.000 0.00 0.00 0.00 4.26
220 221 2.747446 ACGGGTTTGAATTTCGGATCTG 59.253 45.455 0.00 0.00 0.00 2.90
221 222 3.067684 ACGGGTTTGAATTTCGGATCT 57.932 42.857 0.00 0.00 0.00 2.75
222 223 3.242641 GCTACGGGTTTGAATTTCGGATC 60.243 47.826 0.00 0.00 0.00 3.36
223 224 2.681344 GCTACGGGTTTGAATTTCGGAT 59.319 45.455 0.00 0.00 0.00 4.18
224 225 2.078392 GCTACGGGTTTGAATTTCGGA 58.922 47.619 0.00 0.00 0.00 4.55
225 226 2.081462 AGCTACGGGTTTGAATTTCGG 58.919 47.619 0.00 0.00 0.00 4.30
226 227 2.739913 TCAGCTACGGGTTTGAATTTCG 59.260 45.455 0.00 0.00 0.00 3.46
227 228 4.000988 TCTCAGCTACGGGTTTGAATTTC 58.999 43.478 0.00 0.00 0.00 2.17
260 261 0.107831 TCCAAGCGCGGCCTAAATAT 59.892 50.000 8.83 0.00 0.00 1.28
264 265 1.817941 GATTCCAAGCGCGGCCTAA 60.818 57.895 8.83 0.00 0.00 2.69
265 266 2.203015 GATTCCAAGCGCGGCCTA 60.203 61.111 8.83 0.00 0.00 3.93
270 271 1.355796 TTACACCGATTCCAAGCGCG 61.356 55.000 0.00 0.00 36.32 6.86
271 272 0.800012 TTTACACCGATTCCAAGCGC 59.200 50.000 0.00 0.00 36.32 5.92
272 273 1.801771 TGTTTACACCGATTCCAAGCG 59.198 47.619 0.00 0.00 37.59 4.68
273 274 5.751243 ATATGTTTACACCGATTCCAAGC 57.249 39.130 0.00 0.00 0.00 4.01
274 275 7.780008 TGTATATGTTTACACCGATTCCAAG 57.220 36.000 0.00 0.00 0.00 3.61
275 276 7.825270 ACTTGTATATGTTTACACCGATTCCAA 59.175 33.333 0.00 0.00 31.98 3.53
276 277 7.279090 CACTTGTATATGTTTACACCGATTCCA 59.721 37.037 0.00 0.00 31.98 3.53
277 278 7.279313 ACACTTGTATATGTTTACACCGATTCC 59.721 37.037 0.00 0.00 31.98 3.01
278 279 8.193250 ACACTTGTATATGTTTACACCGATTC 57.807 34.615 0.00 0.00 31.98 2.52
279 280 9.826574 ATACACTTGTATATGTTTACACCGATT 57.173 29.630 0.00 0.00 39.29 3.34
280 281 9.826574 AATACACTTGTATATGTTTACACCGAT 57.173 29.630 2.30 0.00 40.10 4.18
281 282 9.656040 AAATACACTTGTATATGTTTACACCGA 57.344 29.630 2.30 0.00 40.10 4.69
292 293 9.895138 ACCCGTAAGAAAAATACACTTGTATAT 57.105 29.630 2.30 0.00 39.07 0.86
293 294 9.153721 CACCCGTAAGAAAAATACACTTGTATA 57.846 33.333 2.30 0.00 39.07 1.47
294 295 7.662669 ACACCCGTAAGAAAAATACACTTGTAT 59.337 33.333 0.00 0.00 40.88 2.29
295 296 6.991531 ACACCCGTAAGAAAAATACACTTGTA 59.008 34.615 0.00 0.00 43.02 2.41
296 297 5.824097 ACACCCGTAAGAAAAATACACTTGT 59.176 36.000 0.00 0.00 43.02 3.16
297 298 6.308371 ACACCCGTAAGAAAAATACACTTG 57.692 37.500 0.00 0.00 43.02 3.16
298 299 8.098912 AGATACACCCGTAAGAAAAATACACTT 58.901 33.333 0.00 0.00 43.02 3.16
299 300 7.618137 AGATACACCCGTAAGAAAAATACACT 58.382 34.615 0.00 0.00 43.02 3.55
300 301 7.838771 AGATACACCCGTAAGAAAAATACAC 57.161 36.000 0.00 0.00 43.02 2.90
301 302 9.369904 GTAAGATACACCCGTAAGAAAAATACA 57.630 33.333 0.00 0.00 43.02 2.29
302 303 8.820933 GGTAAGATACACCCGTAAGAAAAATAC 58.179 37.037 0.00 0.00 43.02 1.89
303 304 7.706179 CGGTAAGATACACCCGTAAGAAAAATA 59.294 37.037 0.00 0.00 43.02 1.40
304 305 6.536224 CGGTAAGATACACCCGTAAGAAAAAT 59.464 38.462 0.00 0.00 43.02 1.82
305 306 5.868801 CGGTAAGATACACCCGTAAGAAAAA 59.131 40.000 0.00 0.00 43.02 1.94
306 307 5.410067 CGGTAAGATACACCCGTAAGAAAA 58.590 41.667 0.00 0.00 43.02 2.29
307 308 4.142182 CCGGTAAGATACACCCGTAAGAAA 60.142 45.833 0.00 0.00 38.79 2.52
308 309 3.381272 CCGGTAAGATACACCCGTAAGAA 59.619 47.826 0.00 0.00 38.79 2.52
309 310 2.951642 CCGGTAAGATACACCCGTAAGA 59.048 50.000 0.00 0.00 38.79 2.10
310 311 2.544486 GCCGGTAAGATACACCCGTAAG 60.544 54.545 1.90 0.00 38.79 2.34
311 312 1.408702 GCCGGTAAGATACACCCGTAA 59.591 52.381 1.90 0.00 38.79 3.18
312 313 1.032014 GCCGGTAAGATACACCCGTA 58.968 55.000 1.90 0.00 38.79 4.02
313 314 1.679559 GGCCGGTAAGATACACCCGT 61.680 60.000 1.90 0.00 38.79 5.28
314 315 1.068585 GGCCGGTAAGATACACCCG 59.931 63.158 1.90 0.00 40.12 5.28
315 316 0.106149 CTGGCCGGTAAGATACACCC 59.894 60.000 2.29 0.00 31.96 4.61
316 317 0.106149 CCTGGCCGGTAAGATACACC 59.894 60.000 11.58 0.00 0.00 4.16
317 318 1.068741 CTCCTGGCCGGTAAGATACAC 59.931 57.143 11.58 0.00 0.00 2.90
318 319 1.410004 CTCCTGGCCGGTAAGATACA 58.590 55.000 11.58 0.00 0.00 2.29
319 320 0.033642 GCTCCTGGCCGGTAAGATAC 59.966 60.000 11.58 0.00 34.27 2.24
320 321 1.461091 CGCTCCTGGCCGGTAAGATA 61.461 60.000 11.58 0.00 37.74 1.98
321 322 2.797278 CGCTCCTGGCCGGTAAGAT 61.797 63.158 11.58 0.00 37.74 2.40
322 323 3.458163 CGCTCCTGGCCGGTAAGA 61.458 66.667 11.58 0.00 37.74 2.10
323 324 2.311688 AATCGCTCCTGGCCGGTAAG 62.312 60.000 11.58 8.83 37.74 2.34
324 325 1.906105 AAATCGCTCCTGGCCGGTAA 61.906 55.000 11.58 0.00 37.74 2.85
325 326 2.363975 AAATCGCTCCTGGCCGGTA 61.364 57.895 11.58 0.00 37.74 4.02
326 327 3.717294 AAATCGCTCCTGGCCGGT 61.717 61.111 11.58 0.00 37.74 5.28
327 328 3.204827 CAAATCGCTCCTGGCCGG 61.205 66.667 3.88 3.88 37.74 6.13
328 329 3.880846 GCAAATCGCTCCTGGCCG 61.881 66.667 0.00 0.00 37.77 6.13
329 330 2.751436 TGCAAATCGCTCCTGGCC 60.751 61.111 0.00 0.00 43.06 5.36
330 331 2.768492 CCTGCAAATCGCTCCTGGC 61.768 63.158 0.00 0.00 43.06 4.85
331 332 2.117156 CCCTGCAAATCGCTCCTGG 61.117 63.158 0.00 0.00 43.06 4.45
332 333 2.117156 CCCCTGCAAATCGCTCCTG 61.117 63.158 0.00 0.00 43.06 3.86
333 334 2.273449 CCCCTGCAAATCGCTCCT 59.727 61.111 0.00 0.00 43.06 3.69
334 335 2.830370 CCCCCTGCAAATCGCTCC 60.830 66.667 0.00 0.00 43.06 4.70
335 336 0.965363 TTTCCCCCTGCAAATCGCTC 60.965 55.000 0.00 0.00 43.06 5.03
336 337 0.324645 ATTTCCCCCTGCAAATCGCT 60.325 50.000 0.00 0.00 43.06 4.93
337 338 0.179103 CATTTCCCCCTGCAAATCGC 60.179 55.000 0.00 0.00 42.89 4.58
338 339 1.473258 TCATTTCCCCCTGCAAATCG 58.527 50.000 0.00 0.00 0.00 3.34
339 340 3.979101 TTTCATTTCCCCCTGCAAATC 57.021 42.857 0.00 0.00 0.00 2.17
340 341 3.556843 CGTTTTCATTTCCCCCTGCAAAT 60.557 43.478 0.00 0.00 0.00 2.32
341 342 2.224161 CGTTTTCATTTCCCCCTGCAAA 60.224 45.455 0.00 0.00 0.00 3.68
342 343 1.342819 CGTTTTCATTTCCCCCTGCAA 59.657 47.619 0.00 0.00 0.00 4.08
343 344 0.965439 CGTTTTCATTTCCCCCTGCA 59.035 50.000 0.00 0.00 0.00 4.41
344 345 1.067846 GTCGTTTTCATTTCCCCCTGC 60.068 52.381 0.00 0.00 0.00 4.85
345 346 1.199097 CGTCGTTTTCATTTCCCCCTG 59.801 52.381 0.00 0.00 0.00 4.45
346 347 1.530323 CGTCGTTTTCATTTCCCCCT 58.470 50.000 0.00 0.00 0.00 4.79
347 348 0.524414 CCGTCGTTTTCATTTCCCCC 59.476 55.000 0.00 0.00 0.00 5.40
348 349 1.525941 TCCGTCGTTTTCATTTCCCC 58.474 50.000 0.00 0.00 0.00 4.81
349 350 2.159435 CCATCCGTCGTTTTCATTTCCC 60.159 50.000 0.00 0.00 0.00 3.97
350 351 2.486592 ACCATCCGTCGTTTTCATTTCC 59.513 45.455 0.00 0.00 0.00 3.13
351 352 3.488489 CACCATCCGTCGTTTTCATTTC 58.512 45.455 0.00 0.00 0.00 2.17
352 353 2.227865 CCACCATCCGTCGTTTTCATTT 59.772 45.455 0.00 0.00 0.00 2.32
353 354 1.810151 CCACCATCCGTCGTTTTCATT 59.190 47.619 0.00 0.00 0.00 2.57
354 355 1.448985 CCACCATCCGTCGTTTTCAT 58.551 50.000 0.00 0.00 0.00 2.57
355 356 1.231958 GCCACCATCCGTCGTTTTCA 61.232 55.000 0.00 0.00 0.00 2.69
356 357 1.500396 GCCACCATCCGTCGTTTTC 59.500 57.895 0.00 0.00 0.00 2.29
357 358 1.969589 GGCCACCATCCGTCGTTTT 60.970 57.895 0.00 0.00 0.00 2.43
358 359 2.359478 GGCCACCATCCGTCGTTT 60.359 61.111 0.00 0.00 0.00 3.60
359 360 3.319198 AGGCCACCATCCGTCGTT 61.319 61.111 5.01 0.00 0.00 3.85
360 361 4.082523 CAGGCCACCATCCGTCGT 62.083 66.667 5.01 0.00 0.00 4.34
361 362 2.233605 TTACAGGCCACCATCCGTCG 62.234 60.000 5.01 0.00 0.00 5.12
362 363 0.743345 GTTACAGGCCACCATCCGTC 60.743 60.000 5.01 0.00 0.00 4.79
363 364 1.198759 AGTTACAGGCCACCATCCGT 61.199 55.000 5.01 0.00 0.00 4.69
364 365 0.035439 AAGTTACAGGCCACCATCCG 60.035 55.000 5.01 0.00 0.00 4.18
365 366 2.215942 AAAGTTACAGGCCACCATCC 57.784 50.000 5.01 0.00 0.00 3.51
366 367 4.076394 TGTAAAAGTTACAGGCCACCATC 58.924 43.478 5.01 0.00 0.00 3.51
367 368 4.107127 TGTAAAAGTTACAGGCCACCAT 57.893 40.909 5.01 0.00 0.00 3.55
368 369 3.579534 TGTAAAAGTTACAGGCCACCA 57.420 42.857 5.01 0.00 0.00 4.17
369 370 3.305131 GCTTGTAAAAGTTACAGGCCACC 60.305 47.826 19.09 0.00 42.40 4.61
370 371 3.608474 CGCTTGTAAAAGTTACAGGCCAC 60.608 47.826 22.06 0.00 44.42 5.01
371 372 2.550606 CGCTTGTAAAAGTTACAGGCCA 59.449 45.455 22.06 1.37 44.42 5.36
372 373 2.551032 ACGCTTGTAAAAGTTACAGGCC 59.449 45.455 22.06 0.00 44.42 5.19
373 374 3.891056 ACGCTTGTAAAAGTTACAGGC 57.109 42.857 19.59 19.59 44.01 4.85
374 375 7.124347 TGAATACGCTTGTAAAAGTTACAGG 57.876 36.000 6.03 6.03 0.00 4.00
375 376 8.996988 TTTGAATACGCTTGTAAAAGTTACAG 57.003 30.769 1.49 0.00 0.00 2.74
376 377 8.614346 ACTTTGAATACGCTTGTAAAAGTTACA 58.386 29.630 0.00 0.00 34.99 2.41
377 378 8.998558 ACTTTGAATACGCTTGTAAAAGTTAC 57.001 30.769 0.00 0.00 34.99 2.50
379 380 9.048446 TCTACTTTGAATACGCTTGTAAAAGTT 57.952 29.630 8.27 0.00 37.60 2.66
380 381 8.597662 TCTACTTTGAATACGCTTGTAAAAGT 57.402 30.769 0.00 0.00 38.85 2.66
381 382 9.872757 TTTCTACTTTGAATACGCTTGTAAAAG 57.127 29.630 0.00 0.00 33.02 2.27
382 383 9.654417 GTTTCTACTTTGAATACGCTTGTAAAA 57.346 29.630 0.00 0.00 0.00 1.52
383 384 8.005466 CGTTTCTACTTTGAATACGCTTGTAAA 58.995 33.333 0.00 0.00 0.00 2.01
384 385 7.381948 TCGTTTCTACTTTGAATACGCTTGTAA 59.618 33.333 0.00 0.00 34.18 2.41
385 386 6.862608 TCGTTTCTACTTTGAATACGCTTGTA 59.137 34.615 0.00 0.00 34.18 2.41
386 387 5.693104 TCGTTTCTACTTTGAATACGCTTGT 59.307 36.000 0.00 0.00 34.18 3.16
387 388 6.007677 GTCGTTTCTACTTTGAATACGCTTG 58.992 40.000 0.00 0.00 34.18 4.01
388 389 5.693104 TGTCGTTTCTACTTTGAATACGCTT 59.307 36.000 0.00 0.00 34.18 4.68
389 390 5.224888 TGTCGTTTCTACTTTGAATACGCT 58.775 37.500 0.00 0.00 34.18 5.07
390 391 5.505165 TGTCGTTTCTACTTTGAATACGC 57.495 39.130 0.00 0.00 34.18 4.42
391 392 7.148705 TGGAATGTCGTTTCTACTTTGAATACG 60.149 37.037 0.00 0.00 34.78 3.06
392 393 8.025243 TGGAATGTCGTTTCTACTTTGAATAC 57.975 34.615 0.00 0.00 0.00 1.89
393 394 8.610248 TTGGAATGTCGTTTCTACTTTGAATA 57.390 30.769 0.00 0.00 0.00 1.75
394 395 7.504924 TTGGAATGTCGTTTCTACTTTGAAT 57.495 32.000 0.00 0.00 0.00 2.57
395 396 6.928979 TTGGAATGTCGTTTCTACTTTGAA 57.071 33.333 0.00 0.00 0.00 2.69
396 397 6.316640 TGTTTGGAATGTCGTTTCTACTTTGA 59.683 34.615 0.00 0.00 0.00 2.69
397 398 6.491394 TGTTTGGAATGTCGTTTCTACTTTG 58.509 36.000 0.00 0.00 0.00 2.77
398 399 6.238648 CCTGTTTGGAATGTCGTTTCTACTTT 60.239 38.462 0.00 0.00 38.35 2.66
399 400 5.238650 CCTGTTTGGAATGTCGTTTCTACTT 59.761 40.000 0.00 0.00 38.35 2.24
400 401 4.755123 CCTGTTTGGAATGTCGTTTCTACT 59.245 41.667 0.00 0.00 38.35 2.57
401 402 4.083484 CCCTGTTTGGAATGTCGTTTCTAC 60.083 45.833 0.00 0.00 38.35 2.59
402 403 4.069304 CCCTGTTTGGAATGTCGTTTCTA 58.931 43.478 0.00 0.00 38.35 2.10
403 404 2.884639 CCCTGTTTGGAATGTCGTTTCT 59.115 45.455 0.00 0.00 38.35 2.52
404 405 2.607038 GCCCTGTTTGGAATGTCGTTTC 60.607 50.000 0.00 0.00 38.35 2.78
405 406 1.339929 GCCCTGTTTGGAATGTCGTTT 59.660 47.619 0.00 0.00 38.35 3.60
406 407 0.958822 GCCCTGTTTGGAATGTCGTT 59.041 50.000 0.00 0.00 38.35 3.85
407 408 0.893727 GGCCCTGTTTGGAATGTCGT 60.894 55.000 0.00 0.00 38.35 4.34
408 409 0.609131 AGGCCCTGTTTGGAATGTCG 60.609 55.000 0.00 0.00 38.35 4.35
409 410 1.632589 AAGGCCCTGTTTGGAATGTC 58.367 50.000 0.00 0.00 38.35 3.06
410 411 2.990740 TAAGGCCCTGTTTGGAATGT 57.009 45.000 0.00 0.00 38.35 2.71
411 412 2.159057 GCATAAGGCCCTGTTTGGAATG 60.159 50.000 0.00 0.00 38.35 2.67
412 413 2.110578 GCATAAGGCCCTGTTTGGAAT 58.889 47.619 0.00 0.00 38.35 3.01
413 414 1.077005 AGCATAAGGCCCTGTTTGGAA 59.923 47.619 0.00 0.00 46.50 3.53
414 415 0.704076 AGCATAAGGCCCTGTTTGGA 59.296 50.000 0.00 0.00 46.50 3.53
415 416 0.819582 CAGCATAAGGCCCTGTTTGG 59.180 55.000 0.00 0.00 46.50 3.28
416 417 0.174162 GCAGCATAAGGCCCTGTTTG 59.826 55.000 0.00 0.00 46.50 2.93
417 418 0.040204 AGCAGCATAAGGCCCTGTTT 59.960 50.000 0.00 0.00 46.50 2.83
418 419 0.394899 GAGCAGCATAAGGCCCTGTT 60.395 55.000 0.00 0.00 46.50 3.16
419 420 1.225704 GAGCAGCATAAGGCCCTGT 59.774 57.895 0.00 0.00 46.50 4.00
420 421 1.527844 GGAGCAGCATAAGGCCCTG 60.528 63.158 0.00 0.00 46.50 4.45
421 422 1.284841 AAGGAGCAGCATAAGGCCCT 61.285 55.000 0.00 0.00 46.50 5.19
422 423 0.396278 AAAGGAGCAGCATAAGGCCC 60.396 55.000 0.00 0.00 46.50 5.80
423 424 1.028130 GAAAGGAGCAGCATAAGGCC 58.972 55.000 0.00 0.00 46.50 5.19
424 425 1.028130 GGAAAGGAGCAGCATAAGGC 58.972 55.000 0.00 0.00 45.30 4.35
425 426 1.303309 CGGAAAGGAGCAGCATAAGG 58.697 55.000 0.00 0.00 0.00 2.69
426 427 2.029838 ACGGAAAGGAGCAGCATAAG 57.970 50.000 0.00 0.00 0.00 1.73
561 562 4.421479 CCTGTCGTTCGGCGCTCT 62.421 66.667 7.64 0.00 41.07 4.09
584 585 2.047655 CGGGCGTACCTTGCAGAA 60.048 61.111 0.00 0.00 36.97 3.02
688 689 3.521947 AAATCCCCGAAAGTACGAGAG 57.478 47.619 0.00 0.00 35.09 3.20
762 763 6.603237 TGAATTCATAAGCAACTGGATACG 57.397 37.500 3.38 0.00 42.51 3.06
926 927 5.553123 TGGCTGAAGATTTTTCGTAACCTA 58.447 37.500 0.00 0.00 0.00 3.08
1020 1021 1.705256 TGCAGAAACGCGGTACTAAG 58.295 50.000 12.47 0.00 33.35 2.18
1592 1598 2.808543 GGAAACAACATGACGAGCTCTT 59.191 45.455 12.85 1.07 0.00 2.85
1703 1886 9.767228 TTCAGAATTCATCAATGATGTTTGTTT 57.233 25.926 21.13 9.86 40.55 2.83
1704 1887 9.767228 TTTCAGAATTCATCAATGATGTTTGTT 57.233 25.926 21.13 12.24 40.55 2.83
1705 1888 9.767228 TTTTCAGAATTCATCAATGATGTTTGT 57.233 25.926 21.13 12.54 40.55 2.83
1797 1980 7.792374 ACCATACATCATTGTCATAAGTCAC 57.208 36.000 0.00 0.00 37.28 3.67
1852 2035 9.547279 AACATTCCTTTTTCCCTATTTGTAGAT 57.453 29.630 0.00 0.00 0.00 1.98
1854 2037 8.802267 TCAACATTCCTTTTTCCCTATTTGTAG 58.198 33.333 0.00 0.00 0.00 2.74
1910 2093 2.982470 GTTTGCATTGGCTCTTTTCTCG 59.018 45.455 0.00 0.00 41.91 4.04
1942 2177 7.475771 TCCCAAATTTTCTTTTCATTTCACG 57.524 32.000 0.00 0.00 0.00 4.35
2025 2260 1.583709 GCGTGCAAGCTTATTCGCC 60.584 57.895 17.84 10.43 38.16 5.54
2087 2322 4.884668 TGTTGTACTCCCAAGTCCTAAG 57.115 45.455 0.00 0.00 36.92 2.18
2112 2347 2.427453 ACATTCGGCTAGTCAGTACCAG 59.573 50.000 0.00 0.00 0.00 4.00
2254 2489 3.368323 CCACCCTTTTATTGTCCACATGC 60.368 47.826 0.00 0.00 0.00 4.06
2351 2586 6.150140 CCCCTCAAGAAATCTACTTTCAACAG 59.850 42.308 1.06 0.00 44.82 3.16
2481 2716 5.045359 ACCTCAGAATGTCTTGGATTCATCA 60.045 40.000 0.00 0.00 37.40 3.07
2482 2717 5.435291 ACCTCAGAATGTCTTGGATTCATC 58.565 41.667 0.00 0.00 37.40 2.92
2517 2752 3.162666 TCTTATCTGAATCCCGCGGTAT 58.837 45.455 26.12 11.93 0.00 2.73
2897 3194 9.901172 ATAACCGACTTTTAGATACCAAGAAAT 57.099 29.630 0.00 0.00 0.00 2.17
2917 3214 3.270027 TGTTCATCAGCCAAGATAACCG 58.730 45.455 0.00 0.00 0.00 4.44
3004 3301 2.118679 TGATCCCAGGTCACCACATAG 58.881 52.381 0.00 0.00 0.00 2.23
3049 3346 1.136305 CGCCTCGGAATCAAGGAACTA 59.864 52.381 5.26 0.00 38.49 2.24
3125 3422 2.175878 ACAGCAAGGACATCAGTGAC 57.824 50.000 0.00 0.00 0.00 3.67
3181 3478 1.474330 ATCGTTGGAGGGGATTTTGC 58.526 50.000 0.00 0.00 0.00 3.68
3269 3568 3.743396 CCGATTCAGAGCAAGCTATTACC 59.257 47.826 0.00 0.00 0.00 2.85
3272 3571 3.133721 AGACCGATTCAGAGCAAGCTATT 59.866 43.478 0.00 0.00 0.00 1.73
3273 3572 2.697751 AGACCGATTCAGAGCAAGCTAT 59.302 45.455 0.00 0.00 0.00 2.97
3516 3819 8.857694 TTCTTAATTCCTACAAAATTCGGACT 57.142 30.769 0.00 0.00 0.00 3.85
3727 4032 3.692593 TCTAAAAATGTTAAGGCCTCCGC 59.307 43.478 5.23 0.00 0.00 5.54
3827 4273 7.658179 ACATAATATAAACGCATCACCAGAG 57.342 36.000 0.00 0.00 0.00 3.35
3828 4274 9.150348 CATACATAATATAAACGCATCACCAGA 57.850 33.333 0.00 0.00 0.00 3.86
3829 4275 8.935844 ACATACATAATATAAACGCATCACCAG 58.064 33.333 0.00 0.00 0.00 4.00
3830 4276 8.840833 ACATACATAATATAAACGCATCACCA 57.159 30.769 0.00 0.00 0.00 4.17
3831 4277 9.151471 AGACATACATAATATAAACGCATCACC 57.849 33.333 0.00 0.00 0.00 4.02
3859 4305 9.803130 CGCAATATATAAACTCAATCACAAGAG 57.197 33.333 0.00 0.00 37.87 2.85
3884 4330 5.246145 GGAACGGAGGGAGTATATAATCG 57.754 47.826 4.23 0.00 0.00 3.34
3902 4348 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
3903 4349 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
3904 4350 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
3905 4351 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
3906 4352 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
3907 4353 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
3908 4354 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
3909 4355 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
3910 4356 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
3911 4357 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
3912 4358 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
3913 4359 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
3914 4360 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
3915 4361 3.005791 CAGATACATCCATACCTGCGACA 59.994 47.826 0.00 0.00 0.00 4.35
3916 4362 3.579709 CAGATACATCCATACCTGCGAC 58.420 50.000 0.00 0.00 0.00 5.19
3917 4363 2.562738 CCAGATACATCCATACCTGCGA 59.437 50.000 0.00 0.00 0.00 5.10
3918 4364 2.562738 TCCAGATACATCCATACCTGCG 59.437 50.000 0.00 0.00 0.00 5.18
3919 4365 4.019860 ACATCCAGATACATCCATACCTGC 60.020 45.833 0.00 0.00 0.00 4.85
3920 4366 5.752036 ACATCCAGATACATCCATACCTG 57.248 43.478 0.00 0.00 0.00 4.00
3921 4367 8.454859 AAATACATCCAGATACATCCATACCT 57.545 34.615 0.00 0.00 0.00 3.08
3926 4372 9.778741 GAACTAAAATACATCCAGATACATCCA 57.221 33.333 0.00 0.00 0.00 3.41
3946 4392 8.826710 CGCAGAAATGGATGTATTTAGAACTAA 58.173 33.333 0.00 0.00 30.78 2.24
3947 4393 8.201464 TCGCAGAAATGGATGTATTTAGAACTA 58.799 33.333 0.00 0.00 30.78 2.24
3948 4394 7.011482 GTCGCAGAAATGGATGTATTTAGAACT 59.989 37.037 0.00 0.00 39.69 3.01
3949 4395 7.126398 GTCGCAGAAATGGATGTATTTAGAAC 58.874 38.462 0.00 0.00 39.69 3.01
3950 4396 6.019075 CGTCGCAGAAATGGATGTATTTAGAA 60.019 38.462 0.00 0.00 39.69 2.10
3951 4397 5.462068 CGTCGCAGAAATGGATGTATTTAGA 59.538 40.000 0.00 0.00 39.69 2.10
3952 4398 5.462068 TCGTCGCAGAAATGGATGTATTTAG 59.538 40.000 0.00 0.00 39.69 1.85
3953 4399 5.353111 TCGTCGCAGAAATGGATGTATTTA 58.647 37.500 0.00 0.00 39.69 1.40
3954 4400 4.188462 TCGTCGCAGAAATGGATGTATTT 58.812 39.130 0.00 0.00 39.69 1.40
3955 4401 3.792401 TCGTCGCAGAAATGGATGTATT 58.208 40.909 0.00 0.00 39.69 1.89
3956 4402 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
3957 4403 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
3958 4404 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
3959 4405 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
3960 4406 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
3961 4407 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
3962 4408 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
3963 4409 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
3964 4410 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
3965 4411 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
3966 4412 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
3967 4413 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
3968 4414 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
3969 4415 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
3970 4416 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
3971 4417 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
3972 4418 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
3973 4419 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
3974 4420 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
3975 4421 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
3976 4422 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3977 4423 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3978 4424 3.198417 GGTACTCCCTCCGTTCCAAATTA 59.802 47.826 0.00 0.00 0.00 1.40
3979 4425 2.026542 GGTACTCCCTCCGTTCCAAATT 60.027 50.000 0.00 0.00 0.00 1.82
3980 4426 1.558294 GGTACTCCCTCCGTTCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
3981 4427 0.978907 GGTACTCCCTCCGTTCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
3982 4428 0.178926 TGGTACTCCCTCCGTTCCAA 60.179 55.000 0.00 0.00 30.28 3.53
3983 4429 0.901580 GTGGTACTCCCTCCGTTCCA 60.902 60.000 0.00 0.00 30.66 3.53
3984 4430 0.614134 AGTGGTACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 0.00 3.62
3985 4431 1.264295 AAGTGGTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
3986 4432 2.610438 TAAGTGGTACTCCCTCCGTT 57.390 50.000 0.00 0.00 0.00 4.44
3987 4433 2.042162 TCTTAAGTGGTACTCCCTCCGT 59.958 50.000 1.63 0.00 0.00 4.69
3988 4434 2.426381 GTCTTAAGTGGTACTCCCTCCG 59.574 54.545 1.63 0.00 0.00 4.63
3989 4435 3.438183 TGTCTTAAGTGGTACTCCCTCC 58.562 50.000 1.63 0.00 0.00 4.30
3990 4436 6.778559 AGATATGTCTTAAGTGGTACTCCCTC 59.221 42.308 1.63 0.00 0.00 4.30
3991 4437 6.551601 CAGATATGTCTTAAGTGGTACTCCCT 59.448 42.308 1.63 0.00 30.42 4.20
3992 4438 6.324254 ACAGATATGTCTTAAGTGGTACTCCC 59.676 42.308 1.63 0.00 30.42 4.30
3993 4439 7.349412 ACAGATATGTCTTAAGTGGTACTCC 57.651 40.000 1.63 0.00 30.42 3.85
3994 4440 8.688151 AGAACAGATATGTCTTAAGTGGTACTC 58.312 37.037 1.63 0.00 30.42 2.59
3995 4441 8.470805 CAGAACAGATATGTCTTAAGTGGTACT 58.529 37.037 1.63 0.00 30.42 2.73
3996 4442 7.222999 GCAGAACAGATATGTCTTAAGTGGTAC 59.777 40.741 1.63 0.00 30.42 3.34
3997 4443 7.124298 AGCAGAACAGATATGTCTTAAGTGGTA 59.876 37.037 1.63 0.00 30.42 3.25
3998 4444 6.070538 AGCAGAACAGATATGTCTTAAGTGGT 60.071 38.462 1.63 0.00 30.42 4.16
4444 4896 2.645838 TCTACCGTTACCGAGCCTAT 57.354 50.000 0.00 0.00 35.63 2.57
4460 4912 1.876714 GCCGTCTTGCGCGATTCTA 60.877 57.895 12.10 0.00 39.71 2.10
4461 4913 3.188786 GCCGTCTTGCGCGATTCT 61.189 61.111 12.10 0.00 39.71 2.40
4462 4914 4.223964 GGCCGTCTTGCGCGATTC 62.224 66.667 12.10 0.00 39.71 2.52
4464 4916 4.838152 ATGGCCGTCTTGCGCGAT 62.838 61.111 12.10 0.00 39.71 4.58
4489 4941 1.801178 CTCACCTTTGGAAGAACGAGC 59.199 52.381 0.00 0.00 0.00 5.03
4611 5063 3.550992 CCCGACCGACGCGAATTG 61.551 66.667 15.93 0.00 41.07 2.32
4730 5182 0.386352 CTAAACGGTGTCACGAGCGA 60.386 55.000 7.05 0.00 40.07 4.93
4731 5183 0.662374 ACTAAACGGTGTCACGAGCG 60.662 55.000 0.00 0.00 42.50 5.03
4732 5184 1.981533 GTACTAAACGGTGTCACGAGC 59.018 52.381 0.00 0.00 37.61 5.03
4733 5185 2.975851 GTGTACTAAACGGTGTCACGAG 59.024 50.000 0.00 0.00 37.61 4.18
4734 5186 2.357323 TGTGTACTAAACGGTGTCACGA 59.643 45.455 0.00 0.00 37.61 4.35
4735 5187 2.468777 GTGTGTACTAAACGGTGTCACG 59.531 50.000 0.00 0.00 40.31 4.35
4736 5188 3.243643 GTGTGTGTACTAAACGGTGTCAC 59.756 47.826 0.00 0.00 0.00 3.67
4737 5189 3.119209 TGTGTGTGTACTAAACGGTGTCA 60.119 43.478 0.00 0.00 0.00 3.58
4738 5190 3.446799 TGTGTGTGTACTAAACGGTGTC 58.553 45.455 0.00 0.00 0.00 3.67
4739 5191 3.523606 TGTGTGTGTACTAAACGGTGT 57.476 42.857 0.00 0.00 0.00 4.16
4740 5192 3.120616 CGATGTGTGTGTACTAAACGGTG 59.879 47.826 0.00 0.00 0.00 4.94
4741 5193 3.311106 CGATGTGTGTGTACTAAACGGT 58.689 45.455 0.00 0.00 0.00 4.83
4742 5194 2.091588 GCGATGTGTGTGTACTAAACGG 59.908 50.000 0.00 0.00 0.00 4.44
4743 5195 2.984471 AGCGATGTGTGTGTACTAAACG 59.016 45.455 0.00 0.00 0.00 3.60
4744 5196 3.059044 CGAGCGATGTGTGTGTACTAAAC 59.941 47.826 0.00 0.00 0.00 2.01
4755 5207 1.729484 CGTGTCACGAGCGATGTGT 60.729 57.895 20.75 0.00 46.05 3.72
4774 5226 1.871080 ATATACAGCGGCAGACAAGC 58.129 50.000 1.45 0.00 0.00 4.01
4775 5227 3.457234 TGAATATACAGCGGCAGACAAG 58.543 45.455 1.45 0.00 0.00 3.16
4783 5235 5.139435 TCAAGATCCTGAATATACAGCGG 57.861 43.478 0.00 0.00 36.67 5.52
4807 5259 0.663153 AACAAACTGCAGCCGAAGAC 59.337 50.000 15.27 0.00 0.00 3.01
4888 5340 9.974980 GGAAATTCCAAGTGTATCTTAAAAACA 57.025 29.630 7.23 0.00 36.28 2.83
4893 5345 6.938030 ACACGGAAATTCCAAGTGTATCTTAA 59.062 34.615 19.43 0.00 38.67 1.85
5245 5821 2.189521 CACCACGTATCTGCCCCC 59.810 66.667 0.00 0.00 0.00 5.40
5280 5858 2.534019 AATCTAATGTGGCGGCGCG 61.534 57.895 26.95 10.24 0.00 6.86
5340 5918 2.609737 CGAACGAGTGAGCTAGGGTTTT 60.610 50.000 0.00 0.00 0.00 2.43
5364 5944 2.261671 GAGTGAGAAAGGGCGCGA 59.738 61.111 12.10 0.00 0.00 5.87
5368 5948 0.035915 GGAGTGGAGTGAGAAAGGGC 60.036 60.000 0.00 0.00 0.00 5.19
5447 6027 1.229529 AGTCGATGGGGTCCACCTT 60.230 57.895 0.00 0.00 35.80 3.50
5459 6039 2.126071 CAACGCGTCCCAGTCGAT 60.126 61.111 14.44 0.00 0.00 3.59
5470 6050 1.722011 ATTCCTCTACCAACAACGCG 58.278 50.000 3.53 3.53 0.00 6.01
5480 6060 1.201343 GCGTCGCTCAATTCCTCTAC 58.799 55.000 10.68 0.00 0.00 2.59
5506 6086 2.181975 CAATGGAGGGCATTTCTGGTT 58.818 47.619 0.00 0.00 0.00 3.67
5511 6091 1.753073 CAGACCAATGGAGGGCATTTC 59.247 52.381 6.16 0.00 40.05 2.17
5537 6119 3.009714 GGTGACAGGGGAGGGGAC 61.010 72.222 0.00 0.00 0.00 4.46
5544 6126 2.301738 GGAGAAGGGGTGACAGGGG 61.302 68.421 0.00 0.00 0.00 4.79
5571 6156 1.139734 GCGAGAATGAGCACCGAGA 59.860 57.895 0.00 0.00 0.00 4.04
5576 6161 1.275066 GCGATGCGAGAATGAGCAC 59.725 57.895 0.00 0.00 46.83 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.