Multiple sequence alignment - TraesCS4D01G156400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G156400 chr4D 100.000 3448 0 0 1 3448 211029114 211032561 0.000000e+00 6368.0
1 TraesCS4D01G156400 chr4D 90.845 142 10 1 1 142 272992056 272991918 1.630000e-43 187.0
2 TraesCS4D01G156400 chr4D 97.849 93 1 1 1974 2065 416450873 416450781 3.560000e-35 159.0
3 TraesCS4D01G156400 chr4A 97.259 1970 46 6 1 1967 438318633 438320597 0.000000e+00 3332.0
4 TraesCS4D01G156400 chr4A 97.417 929 23 1 2063 2991 438320715 438321642 0.000000e+00 1581.0
5 TraesCS4D01G156400 chr4A 96.241 399 7 2 2946 3341 438321637 438322030 0.000000e+00 647.0
6 TraesCS4D01G156400 chr4A 85.685 496 60 5 426 918 385690195 385690682 2.370000e-141 512.0
7 TraesCS4D01G156400 chr4A 91.304 276 20 4 3112 3385 38714837 38715110 1.170000e-99 374.0
8 TraesCS4D01G156400 chr6D 96.631 1692 38 4 1 1674 10464515 10462825 0.000000e+00 2791.0
9 TraesCS4D01G156400 chr6D 81.593 766 79 21 650 1387 124147609 124148340 8.300000e-161 577.0
10 TraesCS4D01G156400 chr3D 98.200 1389 20 3 2063 3448 480830104 480828718 0.000000e+00 2422.0
11 TraesCS4D01G156400 chr3D 97.789 407 8 1 1578 1983 480830507 480830101 0.000000e+00 701.0
12 TraesCS4D01G156400 chr3D 91.636 275 21 2 3112 3385 65435641 65435368 2.510000e-101 379.0
13 TraesCS4D01G156400 chr3B 95.226 1194 38 4 1 1176 309872592 309873784 0.000000e+00 1871.0
14 TraesCS4D01G156400 chr3B 96.234 770 15 2 1076 1844 309875203 309875959 0.000000e+00 1249.0
15 TraesCS4D01G156400 chr3B 94.619 762 17 7 2063 2824 309876070 309876807 0.000000e+00 1158.0
16 TraesCS4D01G156400 chr3B 86.884 1014 95 16 146 1131 806963058 806964061 0.000000e+00 1101.0
17 TraesCS4D01G156400 chr3B 86.978 1006 96 14 153 1131 56915231 56914234 0.000000e+00 1099.0
18 TraesCS4D01G156400 chr3B 94.273 681 15 8 2144 2824 309873783 309874439 0.000000e+00 1020.0
19 TraesCS4D01G156400 chr3B 87.969 773 66 14 153 918 235841667 235840915 0.000000e+00 887.0
20 TraesCS4D01G156400 chr3B 88.980 245 24 1 2617 2858 56914083 56913839 2.010000e-77 300.0
21 TraesCS4D01G156400 chr3B 88.353 249 22 4 2617 2858 806964212 806964460 3.370000e-75 292.0
22 TraesCS4D01G156400 chr3B 82.008 239 26 11 1064 1297 730390101 730390327 1.630000e-43 187.0
23 TraesCS4D01G156400 chr3B 82.008 239 26 11 1064 1297 730407140 730407366 1.630000e-43 187.0
24 TraesCS4D01G156400 chr2B 97.365 721 17 2 1264 1983 67327127 67327846 0.000000e+00 1225.0
25 TraesCS4D01G156400 chr2B 97.112 658 17 1 2063 2718 67346381 67347038 0.000000e+00 1109.0
26 TraesCS4D01G156400 chr2B 97.104 656 19 0 2063 2718 67327843 67328498 0.000000e+00 1107.0
27 TraesCS4D01G156400 chr2B 97.104 656 19 0 2063 2718 67333122 67333777 0.000000e+00 1107.0
28 TraesCS4D01G156400 chr2B 96.956 657 18 2 2063 2718 67339752 67340407 0.000000e+00 1101.0
29 TraesCS4D01G156400 chr2B 96.804 657 19 2 2063 2718 67343066 67343721 0.000000e+00 1096.0
30 TraesCS4D01G156400 chr2B 96.651 657 20 2 2063 2718 67336437 67337092 0.000000e+00 1090.0
31 TraesCS4D01G156400 chr2B 97.742 620 12 2 1365 1983 67345766 67346384 0.000000e+00 1066.0
32 TraesCS4D01G156400 chr2B 97.419 620 14 2 1365 1983 67335822 67336440 0.000000e+00 1055.0
33 TraesCS4D01G156400 chr2B 97.419 620 14 2 1365 1983 67339137 67339755 0.000000e+00 1055.0
34 TraesCS4D01G156400 chr2B 97.419 620 13 3 1365 1983 67342452 67343069 0.000000e+00 1053.0
35 TraesCS4D01G156400 chr2B 97.258 620 15 2 1365 1983 67332507 67333125 0.000000e+00 1050.0
36 TraesCS4D01G156400 chr2B 95.472 508 19 4 2711 3214 67329115 67329622 0.000000e+00 808.0
37 TraesCS4D01G156400 chr2B 96.552 58 2 0 2711 2768 67334394 67334451 2.830000e-16 97.1
38 TraesCS4D01G156400 chr2B 96.552 58 2 0 2711 2768 67337709 67337766 2.830000e-16 97.1
39 TraesCS4D01G156400 chr2B 96.552 58 2 0 2711 2768 67341024 67341081 2.830000e-16 97.1
40 TraesCS4D01G156400 chr2B 96.552 58 2 0 2711 2768 67344338 67344395 2.830000e-16 97.1
41 TraesCS4D01G156400 chr2B 90.769 65 3 2 3050 3113 49336112 49336174 2.210000e-12 84.2
42 TraesCS4D01G156400 chr1D 87.562 1005 84 18 153 1131 95441458 95440469 0.000000e+00 1125.0
43 TraesCS4D01G156400 chr1B 88.336 763 73 9 153 907 415219212 415218458 0.000000e+00 902.0
44 TraesCS4D01G156400 chr1B 92.308 286 21 1 1648 1932 415219421 415219136 4.140000e-109 405.0
45 TraesCS4D01G156400 chr1B 81.356 236 27 11 1067 1297 395225316 395225093 3.540000e-40 176.0
46 TraesCS4D01G156400 chr6B 87.726 774 67 15 153 918 641883085 641882332 0.000000e+00 878.0
47 TraesCS4D01G156400 chr6B 89.209 417 40 4 153 565 65861549 65861964 1.830000e-142 516.0
48 TraesCS4D01G156400 chr6B 88.942 416 42 3 153 565 65837172 65837586 8.540000e-141 510.0
49 TraesCS4D01G156400 chr6B 96.809 94 3 0 1980 2073 716607871 716607778 1.280000e-34 158.0
50 TraesCS4D01G156400 chr7A 81.274 769 82 21 650 1390 721889131 721889865 1.800000e-157 566.0
51 TraesCS4D01G156400 chr7A 91.544 272 20 3 3112 3382 676282235 676281966 4.200000e-99 372.0
52 TraesCS4D01G156400 chr7A 90.426 94 3 1 3112 3205 316239302 316239215 6.050000e-23 119.0
53 TraesCS4D01G156400 chr5B 91.636 275 21 2 3112 3385 382955684 382955957 2.510000e-101 379.0
54 TraesCS4D01G156400 chr5B 97.778 90 2 0 1980 2069 664669497 664669408 4.610000e-34 156.0
55 TraesCS4D01G156400 chr5B 81.818 121 18 3 2997 3113 622205115 622205235 7.880000e-17 99.0
56 TraesCS4D01G156400 chr2A 89.051 274 20 3 3112 3385 628524732 628524469 7.130000e-87 331.0
57 TraesCS4D01G156400 chr2A 94.118 102 5 1 1975 2075 718362309 718362208 1.660000e-33 154.0
58 TraesCS4D01G156400 chr5D 90.717 237 21 1 3149 3385 80212709 80212944 7.180000e-82 315.0
59 TraesCS4D01G156400 chr5D 95.455 44 0 1 3112 3153 80209895 80209938 6.170000e-08 69.4
60 TraesCS4D01G156400 chr7D 92.655 177 13 0 3166 3342 38012670 38012494 4.420000e-64 255.0
61 TraesCS4D01G156400 chr7D 95.789 95 4 0 1980 2074 329500130 329500224 1.660000e-33 154.0
62 TraesCS4D01G156400 chr4B 89.630 135 11 1 8 142 276365187 276365318 5.920000e-38 169.0
63 TraesCS4D01G156400 chrUn 100.000 87 0 0 1980 2066 9840368 9840454 9.900000e-36 161.0
64 TraesCS4D01G156400 chr5A 95.960 99 2 2 1976 2073 680978073 680978170 3.560000e-35 159.0
65 TraesCS4D01G156400 chr6A 97.802 91 2 0 1980 2070 26975970 26976060 1.280000e-34 158.0
66 TraesCS4D01G156400 chr1A 91.589 107 7 2 1979 2084 313905851 313905956 2.770000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G156400 chr4D 211029114 211032561 3447 False 6368.000000 6368 100.000000 1 3448 1 chr4D.!!$F1 3447
1 TraesCS4D01G156400 chr4A 438318633 438322030 3397 False 1853.333333 3332 96.972333 1 3341 3 chr4A.!!$F3 3340
2 TraesCS4D01G156400 chr6D 10462825 10464515 1690 True 2791.000000 2791 96.631000 1 1674 1 chr6D.!!$R1 1673
3 TraesCS4D01G156400 chr6D 124147609 124148340 731 False 577.000000 577 81.593000 650 1387 1 chr6D.!!$F1 737
4 TraesCS4D01G156400 chr3D 480828718 480830507 1789 True 1561.500000 2422 97.994500 1578 3448 2 chr3D.!!$R2 1870
5 TraesCS4D01G156400 chr3B 309872592 309876807 4215 False 1324.500000 1871 95.088000 1 2824 4 chr3B.!!$F3 2823
6 TraesCS4D01G156400 chr3B 235840915 235841667 752 True 887.000000 887 87.969000 153 918 1 chr3B.!!$R1 765
7 TraesCS4D01G156400 chr3B 56913839 56915231 1392 True 699.500000 1099 87.979000 153 2858 2 chr3B.!!$R2 2705
8 TraesCS4D01G156400 chr3B 806963058 806964460 1402 False 696.500000 1101 87.618500 146 2858 2 chr3B.!!$F4 2712
9 TraesCS4D01G156400 chr2B 67327127 67347038 19911 False 841.788235 1225 96.943118 1264 3214 17 chr2B.!!$F2 1950
10 TraesCS4D01G156400 chr1D 95440469 95441458 989 True 1125.000000 1125 87.562000 153 1131 1 chr1D.!!$R1 978
11 TraesCS4D01G156400 chr1B 415218458 415219421 963 True 653.500000 902 90.322000 153 1932 2 chr1B.!!$R2 1779
12 TraesCS4D01G156400 chr6B 641882332 641883085 753 True 878.000000 878 87.726000 153 918 1 chr6B.!!$R1 765
13 TraesCS4D01G156400 chr7A 721889131 721889865 734 False 566.000000 566 81.274000 650 1390 1 chr7A.!!$F1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 680 1.013596 CAGCCACTTTGTCGTTGTCA 58.986 50.000 0.0 0.0 0.00 3.58 F
1054 1140 1.544691 ACGCAGTCATCGTCCTTAACT 59.455 47.619 0.0 0.0 29.74 2.24 F
1348 2971 2.552155 CGGTCTTCTGGATTGGTTTGGA 60.552 50.000 0.0 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 9080 0.178903 TTGCCAGGTACTCCCTCTGT 60.179 55.000 0.00 0.0 43.86 3.41 R
2054 9081 0.984230 TTTGCCAGGTACTCCCTCTG 59.016 55.000 0.00 0.0 43.86 3.35 R
2902 23200 1.300233 GCGTCTCCGGGATGATGAC 60.300 63.158 14.24 10.6 32.95 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
330 392 3.876914 TCGATTTGCCTAACTATGCCTTG 59.123 43.478 0.00 0.00 0.00 3.61
442 513 1.899814 CTGACTACTTGCCTGGTGGTA 59.100 52.381 0.00 0.00 35.27 3.25
551 628 1.238439 CAGGAGCGGCTTTCTTTTCA 58.762 50.000 2.97 0.00 0.00 2.69
603 680 1.013596 CAGCCACTTTGTCGTTGTCA 58.986 50.000 0.00 0.00 0.00 3.58
1054 1140 1.544691 ACGCAGTCATCGTCCTTAACT 59.455 47.619 0.00 0.00 29.74 2.24
1121 1223 2.653115 CTCCAGCTGCTCACGTGA 59.347 61.111 18.88 18.88 0.00 4.35
1348 2971 2.552155 CGGTCTTCTGGATTGGTTTGGA 60.552 50.000 0.00 0.00 0.00 3.53
1517 8421 7.766278 TGAGATTAGCTTTTACTTCTGTCCATC 59.234 37.037 0.00 0.00 0.00 3.51
1639 8543 6.587990 CACAGAATACAAGTAGTGGTTCAGAG 59.412 42.308 0.00 0.00 32.10 3.35
1979 9006 8.434661 GCAGTACCATTGTATTTGTCAATTTTG 58.565 33.333 0.00 0.00 33.92 2.44
1980 9007 9.474920 CAGTACCATTGTATTTGTCAATTTTGT 57.525 29.630 0.00 0.00 33.92 2.83
1984 9011 9.691362 ACCATTGTATTTGTCAATTTTGTACTC 57.309 29.630 0.00 0.00 33.92 2.59
1985 9012 9.139174 CCATTGTATTTGTCAATTTTGTACTCC 57.861 33.333 0.00 0.00 33.92 3.85
1986 9013 9.139174 CATTGTATTTGTCAATTTTGTACTCCC 57.861 33.333 0.00 0.00 33.92 4.30
1987 9014 8.472007 TTGTATTTGTCAATTTTGTACTCCCT 57.528 30.769 0.00 0.00 0.00 4.20
1988 9015 8.106247 TGTATTTGTCAATTTTGTACTCCCTC 57.894 34.615 0.00 0.00 0.00 4.30
1989 9016 6.590234 ATTTGTCAATTTTGTACTCCCTCC 57.410 37.500 0.00 0.00 0.00 4.30
1990 9017 3.670625 TGTCAATTTTGTACTCCCTCCG 58.329 45.455 0.00 0.00 0.00 4.63
1991 9018 3.071892 TGTCAATTTTGTACTCCCTCCGT 59.928 43.478 0.00 0.00 0.00 4.69
1992 9019 4.283978 TGTCAATTTTGTACTCCCTCCGTA 59.716 41.667 0.00 0.00 0.00 4.02
1993 9020 5.221682 TGTCAATTTTGTACTCCCTCCGTAA 60.222 40.000 0.00 0.00 0.00 3.18
1994 9021 5.702209 GTCAATTTTGTACTCCCTCCGTAAA 59.298 40.000 0.00 0.00 0.00 2.01
1995 9022 5.702209 TCAATTTTGTACTCCCTCCGTAAAC 59.298 40.000 0.00 0.00 0.00 2.01
1996 9023 4.961438 TTTTGTACTCCCTCCGTAAACT 57.039 40.909 0.00 0.00 0.00 2.66
1997 9024 6.610075 ATTTTGTACTCCCTCCGTAAACTA 57.390 37.500 0.00 0.00 0.00 2.24
1998 9025 6.418057 TTTTGTACTCCCTCCGTAAACTAA 57.582 37.500 0.00 0.00 0.00 2.24
1999 9026 6.610075 TTTGTACTCCCTCCGTAAACTAAT 57.390 37.500 0.00 0.00 0.00 1.73
2000 9027 7.716799 TTTGTACTCCCTCCGTAAACTAATA 57.283 36.000 0.00 0.00 0.00 0.98
2001 9028 7.902920 TTGTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
2002 9029 8.995027 TTGTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
2003 9030 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
2004 9031 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
2005 9032 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2006 9033 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2007 9034 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2008 9035 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2009 9036 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2010 9037 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2011 9038 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2012 9039 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2013 9040 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2014 9041 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2028 9055 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
2029 9056 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
2030 9057 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
2031 9058 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
2032 9059 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
2724 23015 4.184629 GTCAATCTGGTACTTAGGCTGTG 58.815 47.826 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
551 628 3.138283 TGGACCTTGGTCATCTTCTTGTT 59.862 43.478 19.90 0.00 0.00 2.83
583 660 0.307760 GACAACGACAAAGTGGCTGG 59.692 55.000 0.00 0.00 0.00 4.85
603 680 3.118592 GGGACAATCTTGGACTCTTCGAT 60.119 47.826 0.00 0.00 0.00 3.59
943 1026 5.106157 ACCTTTTAGAATCATCAACGGCAAG 60.106 40.000 0.00 0.00 0.00 4.01
1024 1110 2.287849 CGATGACTGCGTAGACATCCAT 60.288 50.000 29.00 14.85 46.45 3.41
1121 1223 0.603569 ACCTGCGACGAACAGAGAAT 59.396 50.000 0.00 0.00 37.32 2.40
1511 8415 5.504665 CCAAAATCTGTAGCAATCGATGGAC 60.505 44.000 3.24 0.00 0.00 4.02
1517 8421 4.191544 TCTCCCAAAATCTGTAGCAATCG 58.808 43.478 0.00 0.00 0.00 3.34
1979 9006 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
1980 9007 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1981 9008 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
1982 9009 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
1983 9010 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
1984 9011 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
1985 9012 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
1986 9013 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
1987 9014 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
1988 9015 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2002 9029 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
2003 9030 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
2004 9031 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
2005 9032 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
2006 9033 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
2042 9069 9.584008 CAGGTACTCCCTCTGTAAACTAATATA 57.416 37.037 0.00 0.00 43.86 0.86
2043 9070 7.509659 CCAGGTACTCCCTCTGTAAACTAATAT 59.490 40.741 0.00 0.00 43.86 1.28
2044 9071 6.837568 CCAGGTACTCCCTCTGTAAACTAATA 59.162 42.308 0.00 0.00 43.86 0.98
2045 9072 5.661759 CCAGGTACTCCCTCTGTAAACTAAT 59.338 44.000 0.00 0.00 43.86 1.73
2046 9073 5.021458 CCAGGTACTCCCTCTGTAAACTAA 58.979 45.833 0.00 0.00 43.86 2.24
2047 9074 4.607239 CCAGGTACTCCCTCTGTAAACTA 58.393 47.826 0.00 0.00 43.86 2.24
2048 9075 3.442076 CCAGGTACTCCCTCTGTAAACT 58.558 50.000 0.00 0.00 43.86 2.66
2049 9076 2.093606 GCCAGGTACTCCCTCTGTAAAC 60.094 54.545 0.00 0.00 43.86 2.01
2050 9077 2.185387 GCCAGGTACTCCCTCTGTAAA 58.815 52.381 0.00 0.00 43.86 2.01
2051 9078 1.078159 TGCCAGGTACTCCCTCTGTAA 59.922 52.381 0.00 0.00 43.86 2.41
2052 9079 0.708209 TGCCAGGTACTCCCTCTGTA 59.292 55.000 0.00 0.00 43.86 2.74
2053 9080 0.178903 TTGCCAGGTACTCCCTCTGT 60.179 55.000 0.00 0.00 43.86 3.41
2054 9081 0.984230 TTTGCCAGGTACTCCCTCTG 59.016 55.000 0.00 0.00 43.86 3.35
2055 9082 1.280457 CTTTGCCAGGTACTCCCTCT 58.720 55.000 0.00 0.00 43.86 3.69
2056 9083 0.984995 ACTTTGCCAGGTACTCCCTC 59.015 55.000 0.00 0.00 43.86 4.30
2058 9085 2.570302 TCTTACTTTGCCAGGTACTCCC 59.430 50.000 0.00 0.00 34.60 4.30
2059 9086 3.975168 TCTTACTTTGCCAGGTACTCC 57.025 47.619 0.00 0.00 34.60 3.85
2060 9087 4.870991 GTCATCTTACTTTGCCAGGTACTC 59.129 45.833 0.00 0.00 34.60 2.59
2061 9088 4.323562 GGTCATCTTACTTTGCCAGGTACT 60.324 45.833 0.00 0.00 43.88 2.73
2724 23015 4.081087 TGGAAGAACTCTGCCCTGTATTAC 60.081 45.833 0.98 0.00 41.28 1.89
2902 23200 1.300233 GCGTCTCCGGGATGATGAC 60.300 63.158 14.24 10.60 32.95 3.06
3247 23588 8.974060 TTATTCTTTGTCAAACTCAAGGTAGT 57.026 30.769 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.