Multiple sequence alignment - TraesCS4D01G155300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G155300 chr4D 100.000 2471 0 0 1 2471 207362047 207364517 0 4564
1 TraesCS4D01G155300 chr4D 94.377 2472 129 8 6 2471 177441223 177443690 0 3786
2 TraesCS4D01G155300 chr5D 95.184 2471 113 6 6 2471 503226438 503223969 0 3899
3 TraesCS4D01G155300 chr5D 95.105 2472 114 7 6 2471 503270106 503272576 0 3888
4 TraesCS4D01G155300 chr5D 94.745 2474 120 7 6 2471 503236755 503234284 0 3840
5 TraesCS4D01G155300 chr3A 95.063 2471 115 7 6 2471 66009403 66011871 0 3880
6 TraesCS4D01G155300 chrUn 94.777 2470 123 6 6 2471 216510388 216512855 0 3842
7 TraesCS4D01G155300 chrUn 94.777 2470 123 6 6 2471 286272995 286270528 0 3842
8 TraesCS4D01G155300 chr3B 94.460 2473 129 6 6 2471 201535249 201532778 0 3801
9 TraesCS4D01G155300 chr2B 94.413 2470 129 9 6 2471 474916658 474914194 0 3788


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G155300 chr4D 207362047 207364517 2470 False 4564 4564 100.000 1 2471 1 chr4D.!!$F2 2470
1 TraesCS4D01G155300 chr4D 177441223 177443690 2467 False 3786 3786 94.377 6 2471 1 chr4D.!!$F1 2465
2 TraesCS4D01G155300 chr5D 503223969 503226438 2469 True 3899 3899 95.184 6 2471 1 chr5D.!!$R1 2465
3 TraesCS4D01G155300 chr5D 503270106 503272576 2470 False 3888 3888 95.105 6 2471 1 chr5D.!!$F1 2465
4 TraesCS4D01G155300 chr5D 503234284 503236755 2471 True 3840 3840 94.745 6 2471 1 chr5D.!!$R2 2465
5 TraesCS4D01G155300 chr3A 66009403 66011871 2468 False 3880 3880 95.063 6 2471 1 chr3A.!!$F1 2465
6 TraesCS4D01G155300 chrUn 216510388 216512855 2467 False 3842 3842 94.777 6 2471 1 chrUn.!!$F1 2465
7 TraesCS4D01G155300 chrUn 286270528 286272995 2467 True 3842 3842 94.777 6 2471 1 chrUn.!!$R1 2465
8 TraesCS4D01G155300 chr3B 201532778 201535249 2471 True 3801 3801 94.460 6 2471 1 chr3B.!!$R1 2465
9 TraesCS4D01G155300 chr2B 474914194 474916658 2464 True 3788 3788 94.413 6 2471 1 chr2B.!!$R1 2465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.251832 AAGAAGGGCGGAGACTCTCA 60.252 55.000 8.35 0.0 32.70 3.27 F
109 110 0.881118 AAATCGCATGCACGGTTCTT 59.119 45.000 19.57 0.0 34.74 2.52 F
777 782 1.146982 TGGGAAAAGGAGGGAAACAGG 59.853 52.381 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1282 1289 1.000938 GGCAAGTGCTCTTCCTTGTTG 60.001 52.381 2.85 0.00 40.13 3.33 R
1334 1341 1.303317 GCCATATTTCGGCCCGGAT 60.303 57.895 0.73 0.17 44.22 4.18 R
2330 2339 2.092753 CCAGAATAGAAGAGCTTGCCCA 60.093 50.000 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.251832 AAGAAGGGCGGAGACTCTCA 60.252 55.000 8.35 0.00 32.70 3.27
56 57 2.789409 ACGAGGAAAAGGATCCCTTG 57.211 50.000 8.55 4.38 43.92 3.61
57 58 2.266279 ACGAGGAAAAGGATCCCTTGA 58.734 47.619 8.55 0.00 43.92 3.02
77 78 3.578716 TGAGAAAGAATTGACCGAGGAGT 59.421 43.478 0.00 0.00 0.00 3.85
95 96 3.797256 GGAGTCGTATGAGGTGAAAATCG 59.203 47.826 0.00 0.00 0.00 3.34
100 101 2.857592 ATGAGGTGAAAATCGCATGC 57.142 45.000 7.91 7.91 0.00 4.06
109 110 0.881118 AAATCGCATGCACGGTTCTT 59.119 45.000 19.57 0.00 34.74 2.52
120 121 2.619646 GCACGGTTCTTTAAAGGGACAA 59.380 45.455 15.13 0.00 0.00 3.18
192 193 6.701432 CAACTCTACCTTACGTAAAGTTGG 57.299 41.667 27.20 19.70 46.02 3.77
195 196 5.212532 TCTACCTTACGTAAAGTTGGCAA 57.787 39.130 14.41 0.00 32.89 4.52
199 200 4.035909 ACCTTACGTAAAGTTGGCAAAGTG 59.964 41.667 9.68 0.00 32.89 3.16
218 219 4.589908 AGTGCGATTAACCTCTGGATTTT 58.410 39.130 0.00 0.00 0.00 1.82
368 370 2.991190 TCGCAGTAAAGAATCGTCAACC 59.009 45.455 0.00 0.00 0.00 3.77
440 442 1.802960 GATGCCATGTGAATCGCTAGG 59.197 52.381 0.00 0.00 0.00 3.02
465 467 2.967362 TGTGAAGTGTATGGCTAACCG 58.033 47.619 0.00 0.00 39.70 4.44
468 470 3.370061 GTGAAGTGTATGGCTAACCGAAC 59.630 47.826 0.00 0.00 39.70 3.95
480 482 7.108241 TGGCTAACCGAACAACGAAAGTTTT 62.108 40.000 0.00 0.00 46.97 2.43
492 494 5.294734 ACGAAAGTTTTGTAAGGGGACTA 57.705 39.130 6.71 0.00 46.40 2.59
585 587 7.105241 AGGTCAATATGGAAATTCTTTCAGC 57.895 36.000 2.39 0.00 41.43 4.26
595 597 2.060050 TTCTTTCAGCGGTTTTCCCA 57.940 45.000 0.00 0.00 36.42 4.37
606 608 3.150767 CGGTTTTCCCATACTTTGTCCA 58.849 45.455 0.00 0.00 36.42 4.02
616 618 5.335897 CCCATACTTTGTCCATGTCAACAAG 60.336 44.000 5.90 3.27 36.78 3.16
635 637 5.942872 ACAAGCAATTCAAAATACCTCGAG 58.057 37.500 5.13 5.13 0.00 4.04
669 672 3.055094 AGGTCCGAGTCAAATAGCAATGT 60.055 43.478 0.00 0.00 0.00 2.71
673 676 5.000591 TCCGAGTCAAATAGCAATGTTTCA 58.999 37.500 0.00 0.00 0.00 2.69
689 692 6.573617 ATGTTTCAAAGCACTTCTTTTTCG 57.426 33.333 0.00 0.00 42.82 3.46
721 726 5.477607 TTTTGAACCTAAGGACTCGATCA 57.522 39.130 0.00 0.00 0.00 2.92
757 762 9.945904 GGAAAATATAAGATTTCCGATCCTAGT 57.054 33.333 10.51 0.00 43.57 2.57
775 780 1.856920 AGTGGGAAAAGGAGGGAAACA 59.143 47.619 0.00 0.00 0.00 2.83
777 782 1.146982 TGGGAAAAGGAGGGAAACAGG 59.853 52.381 0.00 0.00 0.00 4.00
819 824 9.575783 GAGTAAATAGAATTCCATACTCGATCC 57.424 37.037 15.69 2.22 32.62 3.36
896 901 1.561542 GCTTGGAGGGAGATCTTTCCA 59.438 52.381 16.31 16.31 39.09 3.53
900 905 2.780010 TGGAGGGAGATCTTTCCAATCC 59.220 50.000 17.38 15.38 41.55 3.01
914 920 1.765314 CCAATCCTTCGAGATCCACCT 59.235 52.381 0.00 0.00 0.00 4.00
995 1002 4.911390 ACGGATTCTTGAACCTCTTTCAT 58.089 39.130 0.00 0.00 43.99 2.57
1061 1068 6.935741 ATCCGATCCAATTTTTCGTAATCA 57.064 33.333 0.00 0.00 0.00 2.57
1176 1183 6.564328 ACAAAAGACAGAAACAAATCCACTC 58.436 36.000 0.00 0.00 0.00 3.51
1187 1194 6.783708 AACAAATCCACTCTTGGTTTTACA 57.216 33.333 0.50 0.00 41.16 2.41
1220 1227 6.572167 ACGTAGAGTAACTCCCAATATAGC 57.428 41.667 0.00 0.00 0.00 2.97
1229 1236 9.614792 AGTAACTCCCAATATAGCAGTAAAAAG 57.385 33.333 0.00 0.00 0.00 2.27
1233 1240 7.775561 ACTCCCAATATAGCAGTAAAAAGAAGG 59.224 37.037 0.00 0.00 0.00 3.46
1235 1242 6.321181 CCCAATATAGCAGTAAAAAGAAGGCA 59.679 38.462 0.00 0.00 0.00 4.75
1282 1289 7.041712 GGAAAGTTCCGATTGAAATAGGATCTC 60.042 40.741 13.10 5.63 38.48 2.75
1334 1341 5.127031 GGTTATTAGAAGCATCCCAAAAGCA 59.873 40.000 0.00 0.00 0.00 3.91
1341 1348 1.758122 ATCCCAAAAGCATCCGGGC 60.758 57.895 0.00 0.00 38.68 6.13
1403 1410 2.440599 CAAAGGGAGTGGGGGTGG 59.559 66.667 0.00 0.00 0.00 4.61
1417 1424 0.601057 GGGTGGCATACGCAAAAAGT 59.399 50.000 0.00 0.00 41.54 2.66
1442 1449 2.625314 CGACTCATAGAATGGCAGAGGA 59.375 50.000 0.00 0.00 0.00 3.71
1456 1463 4.716784 TGGCAGAGGAAAATAGAGCTCTTA 59.283 41.667 23.84 8.44 0.00 2.10
1481 1488 7.601856 ACACATTTTCGTTAATCCATGAACAT 58.398 30.769 0.00 0.00 0.00 2.71
1509 1516 7.010160 TCTATGTATGTAGACACATGGATCCA 58.990 38.462 18.88 18.88 45.17 3.41
1514 1521 5.276461 TGTAGACACATGGATCCATACAC 57.724 43.478 26.87 17.09 34.91 2.90
1522 1529 2.957474 TGGATCCATACACCTCGATCA 58.043 47.619 11.44 0.00 34.14 2.92
1551 1558 7.552050 AGAATCAATAGAAGGAGAATCGGAT 57.448 36.000 0.00 0.00 34.37 4.18
1556 1563 7.831753 TCAATAGAAGGAGAATCGGATGATAC 58.168 38.462 0.00 0.00 34.37 2.24
1563 1570 5.011533 AGGAGAATCGGATGATACCTTTCTG 59.988 44.000 0.00 0.00 33.45 3.02
1564 1571 5.011125 GGAGAATCGGATGATACCTTTCTGA 59.989 44.000 0.00 0.00 33.45 3.27
1622 1629 8.829373 AAAATCATTATCAACTAAGCCCTCTT 57.171 30.769 0.00 0.00 36.35 2.85
1706 1714 4.041691 ACCTATTCATGGGGATTCCGTAAG 59.958 45.833 0.00 0.00 38.76 2.34
1734 1742 7.212976 TCCCATTTCAAAAATCGAAACAATCA 58.787 30.769 0.00 0.00 35.31 2.57
1736 1744 7.384660 CCCATTTCAAAAATCGAAACAATCAGA 59.615 33.333 0.00 0.00 35.31 3.27
1744 1752 8.925161 AAAATCGAAACAATCAGAACTTTTCA 57.075 26.923 0.00 0.00 0.00 2.69
1745 1753 9.533253 AAAATCGAAACAATCAGAACTTTTCAT 57.467 25.926 0.00 0.00 0.00 2.57
1928 1937 8.409358 TCTAATGATCGATTCAACCTCTGATA 57.591 34.615 0.00 0.00 38.03 2.15
1957 1966 9.790344 AAAGATAGACCTTGGATCTATTTCATG 57.210 33.333 10.70 0.00 39.09 3.07
1966 1975 7.201767 CCTTGGATCTATTTCATGTCTTCAACC 60.202 40.741 0.00 0.00 0.00 3.77
1987 1996 9.727859 TCAACCAGTTTAGTAATAAGCATAACA 57.272 29.630 0.00 0.00 0.00 2.41
2224 2233 9.386010 TGTGGTGCTAACGATTTAATAACTATT 57.614 29.630 0.00 0.00 0.00 1.73
2301 2310 5.457140 CAAGAGAGATCTACGGTCTAATGC 58.543 45.833 0.00 0.00 0.00 3.56
2311 2320 2.626743 ACGGTCTAATGCGGCTACTATT 59.373 45.455 0.00 0.00 0.00 1.73
2387 2396 3.326521 TGGCTATATGGTTCATCTGGGT 58.673 45.455 0.00 0.00 0.00 4.51
2397 2409 2.366916 GTTCATCTGGGTGGAGATCGAT 59.633 50.000 0.00 0.00 29.72 3.59
2398 2410 2.682594 TCATCTGGGTGGAGATCGATT 58.317 47.619 0.00 0.00 29.72 3.34
2412 2424 8.450964 GTGGAGATCGATTTTCAAGAAATTGTA 58.549 33.333 0.00 0.00 0.00 2.41
2425 2437 7.735500 TCAAGAAATTGTAAACGGTCTTATCG 58.264 34.615 0.00 0.00 0.00 2.92
2459 2471 9.719355 AATGTATAACTCCCCAAAAATTTCAAC 57.281 29.630 0.00 0.00 0.00 3.18
2463 2475 3.454082 ACTCCCCAAAAATTTCAACTGCA 59.546 39.130 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.384647 CCCTTCTTCCACTCCATCCTAAAG 60.385 50.000 0.00 0.00 0.00 1.85
1 2 3.523564 CCCTTCTTCCACTCCATCCTAAA 59.476 47.826 0.00 0.00 0.00 1.85
2 3 3.115390 CCCTTCTTCCACTCCATCCTAA 58.885 50.000 0.00 0.00 0.00 2.69
3 4 2.764269 CCCTTCTTCCACTCCATCCTA 58.236 52.381 0.00 0.00 0.00 2.94
4 5 1.589414 CCCTTCTTCCACTCCATCCT 58.411 55.000 0.00 0.00 0.00 3.24
8 9 2.592993 CCGCCCTTCTTCCACTCCA 61.593 63.158 0.00 0.00 0.00 3.86
35 36 3.073946 TCAAGGGATCCTTTTCCTCGTTT 59.926 43.478 12.58 0.00 41.69 3.60
56 57 4.177783 GACTCCTCGGTCAATTCTTTCTC 58.822 47.826 0.00 0.00 36.35 2.87
57 58 3.367498 CGACTCCTCGGTCAATTCTTTCT 60.367 47.826 0.00 0.00 36.16 2.52
77 78 3.239587 TGCGATTTTCACCTCATACGA 57.760 42.857 0.00 0.00 0.00 3.43
95 96 2.595386 CCTTTAAAGAACCGTGCATGC 58.405 47.619 16.98 11.82 0.00 4.06
100 101 6.349033 CCTTATTGTCCCTTTAAAGAACCGTG 60.349 42.308 16.98 0.00 0.00 4.94
109 110 5.853572 AGTCACCCTTATTGTCCCTTTAA 57.146 39.130 0.00 0.00 0.00 1.52
120 121 3.317430 GTCGACGGATAAGTCACCCTTAT 59.683 47.826 0.00 0.00 46.73 1.73
136 137 3.367025 GGTTGATAGTGGAAAAGTCGACG 59.633 47.826 10.46 0.00 37.54 5.12
176 177 4.035909 CACTTTGCCAACTTTACGTAAGGT 59.964 41.667 16.53 16.53 46.39 3.50
192 193 2.159517 CCAGAGGTTAATCGCACTTTGC 60.160 50.000 0.00 0.00 40.69 3.68
195 196 3.914426 ATCCAGAGGTTAATCGCACTT 57.086 42.857 0.00 0.00 0.00 3.16
199 200 7.644157 GTGATTTAAAATCCAGAGGTTAATCGC 59.356 37.037 0.00 0.00 0.00 4.58
227 228 6.970165 ATGGCCAATACCAGGTATATAAGT 57.030 37.500 10.96 0.00 44.71 2.24
368 370 1.374252 AACGCACTAGAACGCCCTG 60.374 57.895 0.00 0.00 0.00 4.45
440 442 5.163754 GGTTAGCCATACACTTCACATGTTC 60.164 44.000 0.00 0.00 34.09 3.18
465 467 5.038683 CCCCTTACAAAACTTTCGTTGTTC 58.961 41.667 0.00 0.00 38.80 3.18
468 470 4.337274 AGTCCCCTTACAAAACTTTCGTTG 59.663 41.667 0.00 0.00 32.65 4.10
480 482 1.965318 GCCTGCTCTAGTCCCCTTACA 60.965 57.143 0.00 0.00 0.00 2.41
492 494 1.118838 GTCTCATGGTAGCCTGCTCT 58.881 55.000 0.00 0.00 0.00 4.09
538 540 6.992715 CCTTGGACATATAAGAGTTCCGAATT 59.007 38.462 0.00 0.00 0.00 2.17
585 587 3.150767 TGGACAAAGTATGGGAAAACCG 58.849 45.455 0.00 0.00 44.64 4.44
595 597 4.826733 TGCTTGTTGACATGGACAAAGTAT 59.173 37.500 8.70 0.00 35.54 2.12
606 608 7.444299 AGGTATTTTGAATTGCTTGTTGACAT 58.556 30.769 0.00 0.00 0.00 3.06
616 618 7.637709 AAAAACTCGAGGTATTTTGAATTGC 57.362 32.000 18.41 0.00 0.00 3.56
641 644 5.831525 TGCTATTTGACTCGGACCTATTCTA 59.168 40.000 0.00 0.00 0.00 2.10
646 649 4.161565 ACATTGCTATTTGACTCGGACCTA 59.838 41.667 0.00 0.00 0.00 3.08
669 672 7.971168 TGTAATCGAAAAAGAAGTGCTTTGAAA 59.029 29.630 0.00 0.00 45.85 2.69
689 692 9.668497 AGTCCTTAGGTTCAAAATAGTGTAATC 57.332 33.333 0.00 0.00 0.00 1.75
739 744 4.811498 TCCCACTAGGATCGGAAATCTTA 58.189 43.478 0.00 0.00 40.93 2.10
741 746 3.330126 TCCCACTAGGATCGGAAATCT 57.670 47.619 0.00 0.00 40.93 2.40
757 762 1.146982 CCTGTTTCCCTCCTTTTCCCA 59.853 52.381 0.00 0.00 0.00 4.37
800 805 7.410991 TCTATGGGATCGAGTATGGAATTCTA 58.589 38.462 5.23 0.00 0.00 2.10
819 824 7.621285 TCCACAGAATTCTATAGGGATCTATGG 59.379 40.741 7.86 15.23 36.87 2.74
896 901 4.030913 TGTAAGGTGGATCTCGAAGGATT 58.969 43.478 0.00 0.00 0.00 3.01
900 905 5.928839 CCATATTGTAAGGTGGATCTCGAAG 59.071 44.000 0.00 0.00 33.53 3.79
914 920 5.087323 TGGCTTTTTGACCCCATATTGTAA 58.913 37.500 0.00 0.00 0.00 2.41
940 947 9.796120 TTTATAAGGGCGAAAATCACTTATTTG 57.204 29.630 3.26 0.00 37.85 2.32
955 962 8.132995 AGAATCCGTTTTATTTTTATAAGGGCG 58.867 33.333 0.00 0.00 0.00 6.13
969 976 6.768861 TGAAAGAGGTTCAAGAATCCGTTTTA 59.231 34.615 0.00 0.00 43.43 1.52
995 1002 4.335594 CAGTACCTCGATGTGACATGAGTA 59.664 45.833 1.23 0.00 0.00 2.59
1176 1183 6.378582 ACGTATTGCTTGATGTAAAACCAAG 58.621 36.000 0.00 0.00 40.00 3.61
1187 1194 6.461231 GGGAGTTACTCTACGTATTGCTTGAT 60.461 42.308 12.41 0.00 0.00 2.57
1282 1289 1.000938 GGCAAGTGCTCTTCCTTGTTG 60.001 52.381 2.85 0.00 40.13 3.33
1334 1341 1.303317 GCCATATTTCGGCCCGGAT 60.303 57.895 0.73 0.17 44.22 4.18
1341 1348 8.702163 AACTTAATTTGAAAGCCATATTTCGG 57.298 30.769 0.00 0.00 41.21 4.30
1417 1424 3.636764 TCTGCCATTCTATGAGTCGCTTA 59.363 43.478 0.00 0.00 0.00 3.09
1442 1449 8.324163 ACGAAAATGTGTAAGAGCTCTATTTT 57.676 30.769 24.32 24.32 0.00 1.82
1456 1463 6.976088 TGTTCATGGATTAACGAAAATGTGT 58.024 32.000 0.00 0.00 0.00 3.72
1509 1516 6.878317 TGATTCTTTTCTGATCGAGGTGTAT 58.122 36.000 0.00 0.00 0.00 2.29
1514 1521 8.654230 TTCTATTGATTCTTTTCTGATCGAGG 57.346 34.615 0.00 0.00 0.00 4.63
1522 1529 9.323985 CGATTCTCCTTCTATTGATTCTTTTCT 57.676 33.333 0.00 0.00 0.00 2.52
1551 1558 9.712305 TTTTTGTTTGTTTTCAGAAAGGTATCA 57.288 25.926 0.00 0.00 0.00 2.15
1595 1602 9.920946 AGAGGGCTTAGTTGATAATGATTTTTA 57.079 29.630 0.00 0.00 0.00 1.52
1597 1604 8.689972 CAAGAGGGCTTAGTTGATAATGATTTT 58.310 33.333 0.00 0.00 31.81 1.82
1622 1629 5.435686 TCTTATTCTTAAGCAAGCCCTCA 57.564 39.130 0.00 0.00 35.72 3.86
1706 1714 8.527567 TTGTTTCGATTTTTGAAATGGGATAC 57.472 30.769 0.00 0.00 37.62 2.24
1734 1742 6.888632 ACTGCATCCAATCTATGAAAAGTTCT 59.111 34.615 0.00 0.00 0.00 3.01
1736 1744 7.472334 AACTGCATCCAATCTATGAAAAGTT 57.528 32.000 0.00 0.00 0.00 2.66
1745 1753 9.276590 CATGAATTAGTAACTGCATCCAATCTA 57.723 33.333 0.00 0.00 0.00 1.98
1906 1915 8.737168 TTTTATCAGAGGTTGAATCGATCATT 57.263 30.769 0.00 0.00 39.77 2.57
1946 1955 8.641498 AAACTGGTTGAAGACATGAAATAGAT 57.359 30.769 0.00 0.00 0.00 1.98
1957 1966 8.319143 TGCTTATTACTAAACTGGTTGAAGAC 57.681 34.615 0.00 0.00 0.00 3.01
1966 1975 9.174166 AGGGTTGTTATGCTTATTACTAAACTG 57.826 33.333 0.00 0.00 0.00 3.16
1987 1996 3.112263 TCTCCATCGGAACAATAGGGTT 58.888 45.455 0.00 0.00 0.00 4.11
1988 1997 2.700897 CTCTCCATCGGAACAATAGGGT 59.299 50.000 0.00 0.00 0.00 4.34
2126 2135 9.113838 CTCTGTTATAGCCATTTCTGTACATTT 57.886 33.333 0.00 0.00 0.00 2.32
2224 2233 5.827797 ACTGAAACATTCTGGAGCTACAAAA 59.172 36.000 0.00 0.00 33.45 2.44
2311 2320 6.436027 TGCCCAACCCATGAGTAAATATTTA 58.564 36.000 3.71 3.71 0.00 1.40
2330 2339 2.092753 CCAGAATAGAAGAGCTTGCCCA 60.093 50.000 0.00 0.00 0.00 5.36
2387 2396 7.452880 ACAATTTCTTGAAAATCGATCTCCA 57.547 32.000 0.00 0.00 36.20 3.86
2398 2410 9.887406 GATAAGACCGTTTACAATTTCTTGAAA 57.113 29.630 0.00 0.00 36.20 2.69
2412 2424 6.592607 ACATTTGTGTATCGATAAGACCGTTT 59.407 34.615 6.72 0.00 0.00 3.60
2425 2437 8.514330 TTTGGGGAGTTATACATTTGTGTATC 57.486 34.615 4.49 0.00 36.50 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.