Multiple sequence alignment - TraesCS4D01G154900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G154900 chr4D 100.000 2174 0 0 1 2174 206914582 206916755 0.000000e+00 4015
1 TraesCS4D01G154900 chr4D 91.912 272 22 0 1903 2174 202965375 202965646 4.380000e-102 381
2 TraesCS4D01G154900 chr4D 91.241 274 22 2 1899 2172 206970494 206970765 2.640000e-99 372
3 TraesCS4D01G154900 chr4D 100.000 111 0 0 1 111 207082796 207082686 2.830000e-49 206
4 TraesCS4D01G154900 chr4D 100.000 111 0 0 1 111 207267178 207267288 2.830000e-49 206
5 TraesCS4D01G154900 chr3B 94.775 1799 53 22 115 1904 101924728 101922962 0.000000e+00 2763
6 TraesCS4D01G154900 chr7B 94.708 1795 58 19 115 1904 662755182 662756944 0.000000e+00 2754
7 TraesCS4D01G154900 chr3A 94.509 1803 54 21 115 1904 105557105 105558875 0.000000e+00 2739
8 TraesCS4D01G154900 chr1B 94.435 1797 59 23 115 1904 633716824 633715062 0.000000e+00 2726
9 TraesCS4D01G154900 chr1D 93.813 1794 60 21 115 1904 254459268 254457522 0.000000e+00 2651
10 TraesCS4D01G154900 chr1D 95.429 1247 48 7 663 1904 51832627 51833869 0.000000e+00 1978
11 TraesCS4D01G154900 chr1D 92.620 271 20 0 1904 2174 132417735 132418005 7.280000e-105 390
12 TraesCS4D01G154900 chr1D 90.909 275 25 0 1900 2174 132399567 132399841 9.480000e-99 370
13 TraesCS4D01G154900 chr5B 93.989 1464 50 19 115 1573 57515273 57516703 0.000000e+00 2182
14 TraesCS4D01G154900 chr5D 96.240 1250 38 8 663 1904 503338774 503337526 0.000000e+00 2039
15 TraesCS4D01G154900 chr5D 95.763 1251 38 10 663 1904 481597092 481595848 0.000000e+00 2002
16 TraesCS4D01G154900 chr5D 95.520 1250 47 8 663 1904 503312839 503311591 0.000000e+00 1989
17 TraesCS4D01G154900 chr5D 92.876 1165 39 20 115 1272 299972655 299973782 0.000000e+00 1652
18 TraesCS4D01G154900 chr5D 90.217 276 26 1 1899 2174 84494596 84494322 2.050000e-95 359
19 TraesCS4D01G154900 chr5D 99.138 116 1 0 1 116 186100420 186100535 2.190000e-50 209
20 TraesCS4D01G154900 chr5D 98.291 117 1 1 1 117 188766993 188767108 1.020000e-48 204
21 TraesCS4D01G154900 chr1A 95.687 1252 43 8 663 1904 554481593 554480343 0.000000e+00 2002
22 TraesCS4D01G154900 chrUn 91.829 771 29 17 115 883 445187960 445187222 0.000000e+00 1044
23 TraesCS4D01G154900 chrUn 91.655 707 24 17 115 818 261568840 261569514 0.000000e+00 946
24 TraesCS4D01G154900 chrUn 100.000 111 0 0 1 111 80916785 80916675 2.830000e-49 206
25 TraesCS4D01G154900 chrUn 100.000 111 0 0 1 111 130920111 130920001 2.830000e-49 206
26 TraesCS4D01G154900 chrUn 98.276 116 2 0 1 116 219130557 219130672 1.020000e-48 204
27 TraesCS4D01G154900 chr3D 90.809 272 25 0 1903 2174 292201280 292201551 4.410000e-97 364
28 TraesCS4D01G154900 chr3D 89.706 272 28 0 1903 2174 208302142 208301871 4.440000e-92 348
29 TraesCS4D01G154900 chr3D 100.000 112 0 0 1 112 238768687 238768798 7.870000e-50 207
30 TraesCS4D01G154900 chr3D 100.000 111 0 0 1 111 242817697 242817807 2.830000e-49 206
31 TraesCS4D01G154900 chr2D 90.406 271 26 0 1904 2174 341198000 341197730 7.380000e-95 357
32 TraesCS4D01G154900 chr2B 89.338 272 28 1 1904 2174 476474124 476474395 7.430000e-90 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G154900 chr4D 206914582 206916755 2173 False 4015 4015 100.000 1 2174 1 chr4D.!!$F2 2173
1 TraesCS4D01G154900 chr3B 101922962 101924728 1766 True 2763 2763 94.775 115 1904 1 chr3B.!!$R1 1789
2 TraesCS4D01G154900 chr7B 662755182 662756944 1762 False 2754 2754 94.708 115 1904 1 chr7B.!!$F1 1789
3 TraesCS4D01G154900 chr3A 105557105 105558875 1770 False 2739 2739 94.509 115 1904 1 chr3A.!!$F1 1789
4 TraesCS4D01G154900 chr1B 633715062 633716824 1762 True 2726 2726 94.435 115 1904 1 chr1B.!!$R1 1789
5 TraesCS4D01G154900 chr1D 254457522 254459268 1746 True 2651 2651 93.813 115 1904 1 chr1D.!!$R1 1789
6 TraesCS4D01G154900 chr1D 51832627 51833869 1242 False 1978 1978 95.429 663 1904 1 chr1D.!!$F1 1241
7 TraesCS4D01G154900 chr5B 57515273 57516703 1430 False 2182 2182 93.989 115 1573 1 chr5B.!!$F1 1458
8 TraesCS4D01G154900 chr5D 503337526 503338774 1248 True 2039 2039 96.240 663 1904 1 chr5D.!!$R4 1241
9 TraesCS4D01G154900 chr5D 481595848 481597092 1244 True 2002 2002 95.763 663 1904 1 chr5D.!!$R2 1241
10 TraesCS4D01G154900 chr5D 503311591 503312839 1248 True 1989 1989 95.520 663 1904 1 chr5D.!!$R3 1241
11 TraesCS4D01G154900 chr5D 299972655 299973782 1127 False 1652 1652 92.876 115 1272 1 chr5D.!!$F3 1157
12 TraesCS4D01G154900 chr1A 554480343 554481593 1250 True 2002 2002 95.687 663 1904 1 chr1A.!!$R1 1241
13 TraesCS4D01G154900 chrUn 445187222 445187960 738 True 1044 1044 91.829 115 883 1 chrUn.!!$R3 768
14 TraesCS4D01G154900 chrUn 261568840 261569514 674 False 946 946 91.655 115 818 1 chrUn.!!$F2 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.16923 AATTTAATTGGCGTGCGCGA 59.831 45.0 26.19 2.13 43.06 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2038 0.036765 TTGGTCGCCTCGTATTTGCT 60.037 50.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.047413 ACGAAAGTACCTGGTAATTTAATTGG 57.953 34.615 26.60 17.17 46.88 3.16
27 28 6.970613 CGAAAGTACCTGGTAATTTAATTGGC 59.029 38.462 26.60 14.99 36.63 4.52
28 29 6.445357 AAGTACCTGGTAATTTAATTGGCG 57.555 37.500 13.39 0.00 0.00 5.69
29 30 5.503002 AGTACCTGGTAATTTAATTGGCGT 58.497 37.500 8.40 0.00 0.00 5.68
30 31 4.712122 ACCTGGTAATTTAATTGGCGTG 57.288 40.909 0.00 0.00 0.00 5.34
31 32 3.119280 ACCTGGTAATTTAATTGGCGTGC 60.119 43.478 0.00 0.00 0.00 5.34
32 33 3.105203 CTGGTAATTTAATTGGCGTGCG 58.895 45.455 0.00 0.00 0.00 5.34
33 34 1.849829 GGTAATTTAATTGGCGTGCGC 59.150 47.619 8.17 8.17 41.06 6.09
34 35 1.511147 GTAATTTAATTGGCGTGCGCG 59.489 47.619 16.86 16.86 43.06 6.86
35 36 0.169230 AATTTAATTGGCGTGCGCGA 59.831 45.000 26.19 2.13 43.06 5.87
36 37 0.248054 ATTTAATTGGCGTGCGCGAG 60.248 50.000 26.19 0.19 43.06 5.03
50 51 2.493713 CGCGAGCTCTAGTAATTGGT 57.506 50.000 12.85 0.00 0.00 3.67
51 52 2.386249 CGCGAGCTCTAGTAATTGGTC 58.614 52.381 12.85 0.00 0.00 4.02
52 53 2.745102 GCGAGCTCTAGTAATTGGTCC 58.255 52.381 12.85 0.00 0.00 4.46
53 54 2.100916 GCGAGCTCTAGTAATTGGTCCA 59.899 50.000 12.85 0.00 0.00 4.02
54 55 3.797184 GCGAGCTCTAGTAATTGGTCCAG 60.797 52.174 12.85 0.00 0.00 3.86
55 56 3.381908 CGAGCTCTAGTAATTGGTCCAGT 59.618 47.826 12.85 0.00 0.00 4.00
56 57 4.579340 CGAGCTCTAGTAATTGGTCCAGTA 59.421 45.833 12.85 0.00 0.00 2.74
57 58 5.241949 CGAGCTCTAGTAATTGGTCCAGTAT 59.758 44.000 12.85 0.00 0.00 2.12
58 59 6.412362 AGCTCTAGTAATTGGTCCAGTATG 57.588 41.667 0.00 0.00 0.00 2.39
59 60 5.900123 AGCTCTAGTAATTGGTCCAGTATGT 59.100 40.000 0.00 0.00 0.00 2.29
60 61 7.067421 AGCTCTAGTAATTGGTCCAGTATGTA 58.933 38.462 0.00 0.00 0.00 2.29
61 62 7.730784 AGCTCTAGTAATTGGTCCAGTATGTAT 59.269 37.037 0.00 0.00 0.00 2.29
62 63 9.021807 GCTCTAGTAATTGGTCCAGTATGTATA 57.978 37.037 0.00 0.00 0.00 1.47
64 65 9.021807 TCTAGTAATTGGTCCAGTATGTATAGC 57.978 37.037 0.00 0.00 0.00 2.97
65 66 7.612065 AGTAATTGGTCCAGTATGTATAGCA 57.388 36.000 0.00 0.00 0.00 3.49
66 67 7.671302 AGTAATTGGTCCAGTATGTATAGCAG 58.329 38.462 0.00 0.00 0.00 4.24
67 68 4.336889 TTGGTCCAGTATGTATAGCAGC 57.663 45.455 0.00 0.00 0.00 5.25
68 69 3.304829 TGGTCCAGTATGTATAGCAGCA 58.695 45.455 0.00 0.00 0.00 4.41
69 70 3.321968 TGGTCCAGTATGTATAGCAGCAG 59.678 47.826 0.00 0.00 0.00 4.24
70 71 3.306364 GGTCCAGTATGTATAGCAGCAGG 60.306 52.174 0.00 0.00 0.00 4.85
71 72 2.899900 TCCAGTATGTATAGCAGCAGGG 59.100 50.000 0.00 0.00 0.00 4.45
72 73 2.613977 CCAGTATGTATAGCAGCAGGGC 60.614 54.545 0.00 0.00 0.00 5.19
73 74 1.625818 AGTATGTATAGCAGCAGGGCC 59.374 52.381 0.00 0.00 0.00 5.80
74 75 1.625818 GTATGTATAGCAGCAGGGCCT 59.374 52.381 0.00 0.00 0.00 5.19
75 76 0.399454 ATGTATAGCAGCAGGGCCTG 59.601 55.000 29.44 29.44 35.93 4.85
76 77 0.982852 TGTATAGCAGCAGGGCCTGT 60.983 55.000 32.80 17.89 35.28 4.00
77 78 0.533755 GTATAGCAGCAGGGCCTGTG 60.534 60.000 32.80 27.43 35.28 3.66
78 79 1.699054 TATAGCAGCAGGGCCTGTGG 61.699 60.000 32.80 25.03 35.28 4.17
83 84 3.646715 GCAGGGCCTGTGGGTGTA 61.647 66.667 32.80 0.00 33.43 2.90
84 85 3.166434 CAGGGCCTGTGGGTGTAA 58.834 61.111 25.74 0.00 34.45 2.41
85 86 1.691219 CAGGGCCTGTGGGTGTAAT 59.309 57.895 25.74 0.00 34.45 1.89
86 87 0.916086 CAGGGCCTGTGGGTGTAATA 59.084 55.000 25.74 0.00 34.45 0.98
87 88 1.283613 CAGGGCCTGTGGGTGTAATAA 59.716 52.381 25.74 0.00 34.45 1.40
88 89 2.091885 CAGGGCCTGTGGGTGTAATAAT 60.092 50.000 25.74 0.00 34.45 1.28
89 90 2.585432 AGGGCCTGTGGGTGTAATAATT 59.415 45.455 4.50 0.00 34.45 1.40
90 91 2.693074 GGGCCTGTGGGTGTAATAATTG 59.307 50.000 0.84 0.00 34.45 2.32
91 92 3.361786 GGCCTGTGGGTGTAATAATTGT 58.638 45.455 0.00 0.00 34.45 2.71
92 93 4.528920 GGCCTGTGGGTGTAATAATTGTA 58.471 43.478 0.00 0.00 34.45 2.41
93 94 5.137551 GGCCTGTGGGTGTAATAATTGTAT 58.862 41.667 0.00 0.00 34.45 2.29
94 95 5.596772 GGCCTGTGGGTGTAATAATTGTATT 59.403 40.000 0.00 0.00 33.07 1.89
95 96 6.460953 GGCCTGTGGGTGTAATAATTGTATTG 60.461 42.308 0.00 0.00 31.81 1.90
96 97 6.320164 GCCTGTGGGTGTAATAATTGTATTGA 59.680 38.462 0.00 0.00 31.81 2.57
97 98 7.014230 GCCTGTGGGTGTAATAATTGTATTGAT 59.986 37.037 0.00 0.00 31.81 2.57
98 99 8.352201 CCTGTGGGTGTAATAATTGTATTGATG 58.648 37.037 0.00 0.00 32.10 3.07
99 100 8.815565 TGTGGGTGTAATAATTGTATTGATGT 57.184 30.769 0.00 0.00 32.10 3.06
100 101 8.898761 TGTGGGTGTAATAATTGTATTGATGTC 58.101 33.333 0.00 0.00 32.10 3.06
101 102 8.349983 GTGGGTGTAATAATTGTATTGATGTCC 58.650 37.037 0.00 0.00 32.10 4.02
102 103 8.278639 TGGGTGTAATAATTGTATTGATGTCCT 58.721 33.333 0.00 0.00 32.10 3.85
103 104 8.784043 GGGTGTAATAATTGTATTGATGTCCTC 58.216 37.037 0.00 0.00 32.10 3.71
104 105 9.337396 GGTGTAATAATTGTATTGATGTCCTCA 57.663 33.333 0.00 0.00 32.10 3.86
161 162 8.707796 AGCTAGAGTATGCAATAAAGTACCTA 57.292 34.615 0.00 0.00 0.00 3.08
210 211 6.436218 TGTCTCACAATACCTTCTACAGCTTA 59.564 38.462 0.00 0.00 0.00 3.09
290 291 2.229543 CCAGCAGCAATAACAGAAGCAA 59.770 45.455 0.00 0.00 0.00 3.91
291 292 3.119245 CCAGCAGCAATAACAGAAGCAAT 60.119 43.478 0.00 0.00 0.00 3.56
293 294 5.393352 CCAGCAGCAATAACAGAAGCAATAA 60.393 40.000 0.00 0.00 0.00 1.40
309 310 8.462016 AGAAGCAATAACAATTAGTGGATTCAC 58.538 33.333 0.00 0.00 43.93 3.18
334 335 4.807304 GTGAGTAGTTCCTCGTGTCAAAAA 59.193 41.667 0.00 0.00 34.04 1.94
629 636 9.406828 GAAATCATTACTTAAAGTGAAACCACC 57.593 33.333 0.00 0.00 37.80 4.61
633 640 8.164733 TCATTACTTAAAGTGAAACCACCCATA 58.835 33.333 0.00 0.00 37.80 2.74
634 641 8.798402 CATTACTTAAAGTGAAACCACCCATAA 58.202 33.333 0.00 0.00 37.80 1.90
635 642 8.763984 TTACTTAAAGTGAAACCACCCATAAA 57.236 30.769 0.00 0.00 37.80 1.40
636 643 7.663043 ACTTAAAGTGAAACCACCCATAAAA 57.337 32.000 0.00 0.00 37.80 1.52
637 644 7.722363 ACTTAAAGTGAAACCACCCATAAAAG 58.278 34.615 0.00 0.00 37.80 2.27
638 645 7.562088 ACTTAAAGTGAAACCACCCATAAAAGA 59.438 33.333 0.00 0.00 37.80 2.52
639 646 6.405278 AAAGTGAAACCACCCATAAAAGAG 57.595 37.500 0.00 0.00 37.80 2.85
640 647 4.407365 AGTGAAACCACCCATAAAAGAGG 58.593 43.478 0.00 0.00 37.80 3.69
641 648 4.105697 AGTGAAACCACCCATAAAAGAGGA 59.894 41.667 0.00 0.00 37.80 3.71
642 649 4.217767 GTGAAACCACCCATAAAAGAGGAC 59.782 45.833 0.00 0.00 0.00 3.85
643 650 4.105697 TGAAACCACCCATAAAAGAGGACT 59.894 41.667 0.00 0.00 0.00 3.85
644 651 4.302559 AACCACCCATAAAAGAGGACTC 57.697 45.455 0.00 0.00 0.00 3.36
645 652 2.576648 ACCACCCATAAAAGAGGACTCC 59.423 50.000 0.00 0.00 0.00 3.85
646 653 2.576191 CCACCCATAAAAGAGGACTCCA 59.424 50.000 0.00 0.00 0.00 3.86
647 654 3.610911 CACCCATAAAAGAGGACTCCAC 58.389 50.000 0.00 0.00 0.00 4.02
648 655 3.264450 CACCCATAAAAGAGGACTCCACT 59.736 47.826 0.00 0.00 0.00 4.00
649 656 3.916989 ACCCATAAAAGAGGACTCCACTT 59.083 43.478 2.07 2.07 36.05 3.16
650 657 5.045869 CACCCATAAAAGAGGACTCCACTTA 60.046 44.000 8.07 0.00 33.54 2.24
651 658 5.731678 ACCCATAAAAGAGGACTCCACTTAT 59.268 40.000 8.07 0.00 33.54 1.73
652 659 6.058183 CCCATAAAAGAGGACTCCACTTATG 58.942 44.000 8.07 8.90 33.54 1.90
784 793 9.739276 ATGTAGTCTATTCTATTCTCTCTCCTG 57.261 37.037 0.00 0.00 0.00 3.86
848 858 2.679837 CGCAACCAAGCAGATTATCTGT 59.320 45.455 21.46 7.60 45.94 3.41
864 874 8.790718 AGATTATCTGTAACCATGCATGAATTC 58.209 33.333 28.31 14.92 0.00 2.17
866 876 6.778834 ATCTGTAACCATGCATGAATTCAA 57.221 33.333 28.31 11.72 0.00 2.69
867 877 6.198650 TCTGTAACCATGCATGAATTCAAG 57.801 37.500 28.31 18.91 0.00 3.02
870 880 6.851609 TGTAACCATGCATGAATTCAAGTAC 58.148 36.000 28.31 14.95 0.00 2.73
939 956 6.339220 ACCCTCCATGGATTCACCTATATAA 58.661 40.000 16.63 0.00 39.86 0.98
950 967 7.365117 GGATTCACCTATATAAGCTGTGGCTAT 60.365 40.741 0.00 0.00 40.99 2.97
1012 1029 5.423704 TCCAAGAAACATGACCGGTATAA 57.576 39.130 7.34 0.00 0.00 0.98
1014 1031 5.188163 TCCAAGAAACATGACCGGTATAAGA 59.812 40.000 7.34 0.00 0.00 2.10
1054 1071 5.622770 AGAAACAAGAACAACAACGACTT 57.377 34.783 0.00 0.00 0.00 3.01
1143 1160 9.847224 TCTAGGATGTTAATTGGTAAAAGGATC 57.153 33.333 0.00 0.00 0.00 3.36
1267 1284 2.831685 TATATCATTCGTGGGCGCTT 57.168 45.000 7.64 0.00 38.14 4.68
1393 1410 4.352298 AGGGACCATATTCTTCTCCAATCC 59.648 45.833 0.00 0.00 0.00 3.01
1429 1446 5.471257 AGTCTCGAATAAACTCAAGGACAC 58.529 41.667 0.00 0.00 0.00 3.67
1469 1486 1.302192 CGGTCGGGATGGTTTGTGT 60.302 57.895 0.00 0.00 0.00 3.72
1493 1510 2.002586 CCGAACAGCTATGACAACTGG 58.997 52.381 7.99 0.00 35.70 4.00
1524 1541 6.200475 GCAAGATAGTAATTACGACCCAAGAC 59.800 42.308 9.91 0.00 0.00 3.01
1563 1580 5.221322 GGCATGAATTTGGAAACCTCCTATC 60.221 44.000 0.00 0.00 42.94 2.08
1772 1789 5.591877 GGATACCAAGAAAGCACATCAGATT 59.408 40.000 0.00 0.00 0.00 2.40
1904 1943 3.120199 CGTAGTTGCCCAAGAATTCACTG 60.120 47.826 8.44 4.47 0.00 3.66
1905 1944 2.949447 AGTTGCCCAAGAATTCACTGT 58.051 42.857 8.44 0.00 0.00 3.55
1906 1945 2.624838 AGTTGCCCAAGAATTCACTGTG 59.375 45.455 8.44 0.17 0.00 3.66
1907 1946 1.619654 TGCCCAAGAATTCACTGTGG 58.380 50.000 8.44 9.03 0.00 4.17
1909 1948 2.292828 CCCAAGAATTCACTGTGGGT 57.707 50.000 20.38 0.00 43.44 4.51
1910 1949 1.888512 CCCAAGAATTCACTGTGGGTG 59.111 52.381 20.38 4.75 43.44 4.61
1911 1950 1.270550 CCAAGAATTCACTGTGGGTGC 59.729 52.381 8.44 0.00 44.98 5.01
1912 1951 1.955778 CAAGAATTCACTGTGGGTGCA 59.044 47.619 8.44 0.00 44.98 4.57
1913 1952 1.609208 AGAATTCACTGTGGGTGCAC 58.391 50.000 8.80 8.80 44.98 4.57
1914 1953 1.143684 AGAATTCACTGTGGGTGCACT 59.856 47.619 17.98 0.00 44.98 4.40
1915 1954 2.371841 AGAATTCACTGTGGGTGCACTA 59.628 45.455 17.98 3.30 44.98 2.74
1916 1955 2.949177 ATTCACTGTGGGTGCACTAA 57.051 45.000 17.98 1.95 44.98 2.24
1917 1956 2.719531 TTCACTGTGGGTGCACTAAA 57.280 45.000 17.98 0.37 44.98 1.85
1918 1957 2.254546 TCACTGTGGGTGCACTAAAG 57.745 50.000 17.98 12.88 44.98 1.85
1919 1958 1.488812 TCACTGTGGGTGCACTAAAGT 59.511 47.619 17.98 13.52 44.98 2.66
1920 1959 2.092646 TCACTGTGGGTGCACTAAAGTT 60.093 45.455 17.98 0.00 44.98 2.66
1921 1960 2.290641 CACTGTGGGTGCACTAAAGTTC 59.709 50.000 17.98 0.00 39.22 3.01
1922 1961 2.092646 ACTGTGGGTGCACTAAAGTTCA 60.093 45.455 17.98 6.10 0.00 3.18
1923 1962 2.549754 CTGTGGGTGCACTAAAGTTCAG 59.450 50.000 17.98 11.44 0.00 3.02
1924 1963 1.880027 GTGGGTGCACTAAAGTTCAGG 59.120 52.381 17.98 0.00 0.00 3.86
1925 1964 0.881796 GGGTGCACTAAAGTTCAGGC 59.118 55.000 17.98 0.00 0.00 4.85
1926 1965 0.881796 GGTGCACTAAAGTTCAGGCC 59.118 55.000 17.98 0.00 0.00 5.19
1927 1966 0.881796 GTGCACTAAAGTTCAGGCCC 59.118 55.000 10.32 0.00 0.00 5.80
1928 1967 0.771127 TGCACTAAAGTTCAGGCCCT 59.229 50.000 0.00 0.00 0.00 5.19
1929 1968 1.144913 TGCACTAAAGTTCAGGCCCTT 59.855 47.619 0.00 0.00 0.00 3.95
1930 1969 2.239400 GCACTAAAGTTCAGGCCCTTT 58.761 47.619 0.00 4.36 35.25 3.11
1931 1970 3.181438 TGCACTAAAGTTCAGGCCCTTTA 60.181 43.478 0.00 5.42 33.24 1.85
1936 1975 3.715638 AAGTTCAGGCCCTTTAGTACC 57.284 47.619 0.00 0.00 0.00 3.34
1937 1976 1.914108 AGTTCAGGCCCTTTAGTACCC 59.086 52.381 0.00 0.00 0.00 3.69
1938 1977 1.064906 GTTCAGGCCCTTTAGTACCCC 60.065 57.143 0.00 0.00 0.00 4.95
1939 1978 0.979187 TCAGGCCCTTTAGTACCCCG 60.979 60.000 0.00 0.00 0.00 5.73
1940 1979 1.081648 AGGCCCTTTAGTACCCCGT 59.918 57.895 0.00 0.00 0.00 5.28
1941 1980 0.339510 AGGCCCTTTAGTACCCCGTA 59.660 55.000 0.00 0.00 0.00 4.02
1942 1981 0.465705 GGCCCTTTAGTACCCCGTAC 59.534 60.000 0.00 0.00 39.10 3.67
1944 1983 1.833630 GCCCTTTAGTACCCCGTACTT 59.166 52.381 9.58 0.00 45.68 2.24
1945 1984 2.419159 GCCCTTTAGTACCCCGTACTTG 60.419 54.545 9.58 2.26 45.68 3.16
1946 1985 2.833943 CCCTTTAGTACCCCGTACTTGT 59.166 50.000 9.58 0.00 45.68 3.16
1947 1986 3.368739 CCCTTTAGTACCCCGTACTTGTG 60.369 52.174 9.58 1.67 45.68 3.33
1948 1987 3.256558 CTTTAGTACCCCGTACTTGTGC 58.743 50.000 9.58 0.00 45.68 4.57
1949 1988 1.921982 TAGTACCCCGTACTTGTGCA 58.078 50.000 9.58 0.00 45.68 4.57
1950 1989 0.319405 AGTACCCCGTACTTGTGCAC 59.681 55.000 10.75 10.75 45.68 4.57
1951 1990 1.010419 GTACCCCGTACTTGTGCACG 61.010 60.000 13.13 0.65 36.25 5.34
1970 2009 3.200522 GCAGTTGCAGCCATACCC 58.799 61.111 0.00 0.00 41.59 3.69
1971 2010 2.764314 GCAGTTGCAGCCATACCCG 61.764 63.158 0.00 0.00 41.59 5.28
1972 2011 2.438434 AGTTGCAGCCATACCCGC 60.438 61.111 0.00 0.00 0.00 6.13
1973 2012 3.876198 GTTGCAGCCATACCCGCG 61.876 66.667 0.00 0.00 0.00 6.46
1980 2019 4.483243 CCATACCCGCGGCAAGGT 62.483 66.667 22.85 15.27 40.31 3.50
1981 2020 2.895372 CATACCCGCGGCAAGGTC 60.895 66.667 22.85 0.00 37.59 3.85
1982 2021 3.081409 ATACCCGCGGCAAGGTCT 61.081 61.111 22.85 1.40 37.59 3.85
1983 2022 3.385749 ATACCCGCGGCAAGGTCTG 62.386 63.158 22.85 5.83 37.59 3.51
1992 2031 3.160585 CAAGGTCTGCTGGGGACA 58.839 61.111 0.00 0.00 35.61 4.02
2002 2041 4.980592 TGGGGACAGCTGGGAGCA 62.981 66.667 19.93 0.00 45.56 4.26
2003 2042 3.650950 GGGGACAGCTGGGAGCAA 61.651 66.667 19.93 0.00 45.56 3.91
2004 2043 2.436109 GGGACAGCTGGGAGCAAA 59.564 61.111 19.93 0.00 45.56 3.68
2005 2044 1.000396 GGGACAGCTGGGAGCAAAT 60.000 57.895 19.93 0.00 45.56 2.32
2006 2045 0.255890 GGGACAGCTGGGAGCAAATA 59.744 55.000 19.93 0.00 45.56 1.40
2007 2046 1.383523 GGACAGCTGGGAGCAAATAC 58.616 55.000 19.93 0.00 45.56 1.89
2008 2047 1.009829 GACAGCTGGGAGCAAATACG 58.990 55.000 19.93 0.00 45.56 3.06
2009 2048 0.613260 ACAGCTGGGAGCAAATACGA 59.387 50.000 19.93 0.00 45.56 3.43
2010 2049 1.293924 CAGCTGGGAGCAAATACGAG 58.706 55.000 5.57 0.00 45.56 4.18
2011 2050 0.179000 AGCTGGGAGCAAATACGAGG 59.821 55.000 0.00 0.00 45.56 4.63
2012 2051 1.440145 GCTGGGAGCAAATACGAGGC 61.440 60.000 0.00 0.00 41.89 4.70
2013 2052 1.153449 TGGGAGCAAATACGAGGCG 60.153 57.895 0.00 0.00 0.00 5.52
2014 2053 1.143183 GGGAGCAAATACGAGGCGA 59.857 57.895 0.00 0.00 0.00 5.54
2015 2054 1.152383 GGGAGCAAATACGAGGCGAC 61.152 60.000 0.00 0.00 0.00 5.19
2016 2055 1.152383 GGAGCAAATACGAGGCGACC 61.152 60.000 0.00 0.00 0.00 4.79
2017 2056 0.459585 GAGCAAATACGAGGCGACCA 60.460 55.000 0.00 0.00 0.00 4.02
2018 2057 0.036765 AGCAAATACGAGGCGACCAA 60.037 50.000 0.00 0.00 0.00 3.67
2019 2058 0.373716 GCAAATACGAGGCGACCAAG 59.626 55.000 0.00 0.00 0.00 3.61
2020 2059 2.004583 CAAATACGAGGCGACCAAGA 57.995 50.000 0.00 0.00 0.00 3.02
2021 2060 1.659098 CAAATACGAGGCGACCAAGAC 59.341 52.381 0.00 0.00 0.00 3.01
2022 2061 0.179145 AATACGAGGCGACCAAGACG 60.179 55.000 0.00 0.00 0.00 4.18
2023 2062 1.028330 ATACGAGGCGACCAAGACGA 61.028 55.000 0.00 0.00 0.00 4.20
2024 2063 1.915614 TACGAGGCGACCAAGACGAC 61.916 60.000 0.00 0.00 39.24 4.34
2025 2064 2.649034 GAGGCGACCAAGACGACA 59.351 61.111 0.00 0.00 41.61 4.35
2026 2065 1.215647 GAGGCGACCAAGACGACAT 59.784 57.895 0.00 0.00 41.61 3.06
2027 2066 0.802607 GAGGCGACCAAGACGACATC 60.803 60.000 0.00 0.00 41.61 3.06
2028 2067 1.215647 GGCGACCAAGACGACATCT 59.784 57.895 0.00 0.00 40.46 2.90
2029 2068 1.078759 GGCGACCAAGACGACATCTG 61.079 60.000 0.00 0.00 37.88 2.90
2030 2069 0.109272 GCGACCAAGACGACATCTGA 60.109 55.000 0.00 0.00 37.88 3.27
2031 2070 1.901538 CGACCAAGACGACATCTGAG 58.098 55.000 0.00 0.00 37.88 3.35
2032 2071 1.634702 GACCAAGACGACATCTGAGC 58.365 55.000 0.00 0.00 37.88 4.26
2033 2072 0.247736 ACCAAGACGACATCTGAGCC 59.752 55.000 0.00 0.00 37.88 4.70
2034 2073 0.803768 CCAAGACGACATCTGAGCCG 60.804 60.000 0.00 0.00 37.88 5.52
2035 2074 0.803768 CAAGACGACATCTGAGCCGG 60.804 60.000 0.00 0.00 37.88 6.13
2036 2075 1.251527 AAGACGACATCTGAGCCGGT 61.252 55.000 1.90 0.00 37.88 5.28
2037 2076 0.393944 AGACGACATCTGAGCCGGTA 60.394 55.000 1.90 0.00 35.81 4.02
2038 2077 0.454600 GACGACATCTGAGCCGGTAA 59.545 55.000 1.90 0.00 0.00 2.85
2039 2078 1.067212 GACGACATCTGAGCCGGTAAT 59.933 52.381 1.90 0.00 0.00 1.89
2040 2079 1.067212 ACGACATCTGAGCCGGTAATC 59.933 52.381 1.90 0.00 0.00 1.75
2041 2080 1.067060 CGACATCTGAGCCGGTAATCA 59.933 52.381 1.90 4.57 0.00 2.57
2042 2081 2.748605 GACATCTGAGCCGGTAATCAG 58.251 52.381 20.82 20.82 43.53 2.90
2045 2084 2.437085 TCTGAGCCGGTAATCAGAGA 57.563 50.000 23.73 10.21 45.31 3.10
2046 2085 2.735151 TCTGAGCCGGTAATCAGAGAA 58.265 47.619 23.73 9.49 45.31 2.87
2047 2086 2.427453 TCTGAGCCGGTAATCAGAGAAC 59.573 50.000 23.73 0.00 45.31 3.01
2048 2087 2.166459 CTGAGCCGGTAATCAGAGAACA 59.834 50.000 21.78 0.26 44.68 3.18
2049 2088 2.766263 TGAGCCGGTAATCAGAGAACAT 59.234 45.455 1.90 0.00 0.00 2.71
2050 2089 3.958147 TGAGCCGGTAATCAGAGAACATA 59.042 43.478 1.90 0.00 0.00 2.29
2051 2090 4.404394 TGAGCCGGTAATCAGAGAACATAA 59.596 41.667 1.90 0.00 0.00 1.90
2052 2091 4.950050 AGCCGGTAATCAGAGAACATAAG 58.050 43.478 1.90 0.00 0.00 1.73
2053 2092 4.058817 GCCGGTAATCAGAGAACATAAGG 58.941 47.826 1.90 0.00 0.00 2.69
2054 2093 4.058817 CCGGTAATCAGAGAACATAAGGC 58.941 47.826 0.00 0.00 0.00 4.35
2055 2094 4.442893 CCGGTAATCAGAGAACATAAGGCA 60.443 45.833 0.00 0.00 0.00 4.75
2056 2095 4.508124 CGGTAATCAGAGAACATAAGGCAC 59.492 45.833 0.00 0.00 0.00 5.01
2057 2096 4.508124 GGTAATCAGAGAACATAAGGCACG 59.492 45.833 0.00 0.00 0.00 5.34
2058 2097 3.895232 ATCAGAGAACATAAGGCACGT 57.105 42.857 0.00 0.00 0.00 4.49
2059 2098 3.678056 TCAGAGAACATAAGGCACGTT 57.322 42.857 0.00 0.00 0.00 3.99
2060 2099 3.325870 TCAGAGAACATAAGGCACGTTG 58.674 45.455 0.00 0.00 0.00 4.10
2061 2100 3.006430 TCAGAGAACATAAGGCACGTTGA 59.994 43.478 0.00 0.00 0.00 3.18
2062 2101 3.369147 CAGAGAACATAAGGCACGTTGAG 59.631 47.826 0.00 0.00 0.00 3.02
2063 2102 2.076863 AGAACATAAGGCACGTTGAGC 58.923 47.619 0.00 0.00 0.00 4.26
2080 2119 4.740822 CCCCCGGCAAGGTCCTTG 62.741 72.222 25.05 25.05 43.57 3.61
2087 2126 2.677228 CAAGGTCCTTGCCGGGAT 59.323 61.111 18.66 0.00 37.73 3.85
2088 2127 1.750399 CAAGGTCCTTGCCGGGATG 60.750 63.158 18.66 1.76 37.73 3.51
2089 2128 2.983879 AAGGTCCTTGCCGGGATGG 61.984 63.158 20.49 20.49 37.73 3.51
2111 2150 3.819188 CGAAGCCCTGGCAAGATC 58.181 61.111 11.38 2.46 44.88 2.75
2112 2151 1.821332 CGAAGCCCTGGCAAGATCC 60.821 63.158 11.38 0.00 44.88 3.36
2113 2152 1.611965 GAAGCCCTGGCAAGATCCT 59.388 57.895 11.38 0.00 44.88 3.24
2114 2153 0.033699 GAAGCCCTGGCAAGATCCTT 60.034 55.000 11.38 0.00 44.88 3.36
2115 2154 0.324091 AAGCCCTGGCAAGATCCTTG 60.324 55.000 11.38 2.54 44.88 3.61
2116 2155 2.421399 GCCCTGGCAAGATCCTTGC 61.421 63.158 19.97 19.97 44.22 4.01
2121 2160 2.272146 GCAAGATCCTTGCCGGGA 59.728 61.111 18.04 0.00 39.38 5.14
2123 2162 0.753111 GCAAGATCCTTGCCGGGATT 60.753 55.000 18.04 0.00 45.18 3.01
2124 2163 1.767759 CAAGATCCTTGCCGGGATTT 58.232 50.000 2.18 1.48 45.18 2.17
2125 2164 2.102578 CAAGATCCTTGCCGGGATTTT 58.897 47.619 2.18 6.92 45.18 1.82
2126 2165 2.497273 CAAGATCCTTGCCGGGATTTTT 59.503 45.455 2.18 5.04 45.18 1.94
2140 2179 4.116878 TTTTTGCAAAGCACCGGC 57.883 50.000 12.41 0.00 38.71 6.13
2141 2180 1.219124 TTTTTGCAAAGCACCGGCA 59.781 47.368 12.41 0.00 44.61 5.69
2142 2181 0.391661 TTTTTGCAAAGCACCGGCAA 60.392 45.000 12.41 0.00 44.97 4.52
2143 2182 0.809241 TTTTGCAAAGCACCGGCAAG 60.809 50.000 12.41 0.00 46.82 4.01
2144 2183 1.670949 TTTGCAAAGCACCGGCAAGA 61.671 50.000 8.05 0.00 46.82 3.02
2145 2184 2.050077 GCAAAGCACCGGCAAGAC 60.050 61.111 0.00 0.00 44.61 3.01
2146 2185 2.644992 CAAAGCACCGGCAAGACC 59.355 61.111 0.00 0.00 44.61 3.85
2147 2186 2.192861 CAAAGCACCGGCAAGACCA 61.193 57.895 0.00 0.00 44.61 4.02
2148 2187 1.228552 AAAGCACCGGCAAGACCAT 60.229 52.632 0.00 0.00 44.61 3.55
2149 2188 1.244019 AAAGCACCGGCAAGACCATC 61.244 55.000 0.00 0.00 44.61 3.51
2150 2189 2.045926 GCACCGGCAAGACCATCT 60.046 61.111 0.00 0.00 40.72 2.90
2151 2190 2.109126 GCACCGGCAAGACCATCTC 61.109 63.158 0.00 0.00 40.72 2.75
2152 2191 1.450312 CACCGGCAAGACCATCTCC 60.450 63.158 0.00 0.00 39.03 3.71
2153 2192 2.190578 CCGGCAAGACCATCTCCC 59.809 66.667 0.00 0.00 39.03 4.30
2154 2193 2.370445 CCGGCAAGACCATCTCCCT 61.370 63.158 0.00 0.00 39.03 4.20
2155 2194 1.604378 CGGCAAGACCATCTCCCTT 59.396 57.895 0.00 0.00 39.03 3.95
2156 2195 0.745845 CGGCAAGACCATCTCCCTTG 60.746 60.000 0.00 0.00 40.00 3.61
2157 2196 0.620556 GGCAAGACCATCTCCCTTGA 59.379 55.000 0.00 0.00 39.55 3.02
2158 2197 1.407989 GGCAAGACCATCTCCCTTGAG 60.408 57.143 0.00 0.00 39.55 3.02
2159 2198 1.407989 GCAAGACCATCTCCCTTGAGG 60.408 57.143 0.00 0.00 39.55 3.86
2160 2199 1.912043 CAAGACCATCTCCCTTGAGGT 59.088 52.381 0.00 0.00 39.55 3.85
2161 2200 2.307098 CAAGACCATCTCCCTTGAGGTT 59.693 50.000 0.00 0.00 39.55 3.50
2162 2201 1.912043 AGACCATCTCCCTTGAGGTTG 59.088 52.381 0.00 0.00 39.23 3.77
2163 2202 1.909302 GACCATCTCCCTTGAGGTTGA 59.091 52.381 0.00 0.00 39.23 3.18
2164 2203 1.912043 ACCATCTCCCTTGAGGTTGAG 59.088 52.381 0.00 0.00 39.23 3.02
2165 2204 2.191400 CCATCTCCCTTGAGGTTGAGA 58.809 52.381 8.01 8.01 39.23 3.27
2166 2205 2.170187 CCATCTCCCTTGAGGTTGAGAG 59.830 54.545 10.45 4.23 36.44 3.20
2167 2206 1.270907 TCTCCCTTGAGGTTGAGAGC 58.729 55.000 2.91 0.00 39.23 4.09
2168 2207 1.203237 TCTCCCTTGAGGTTGAGAGCT 60.203 52.381 0.00 0.00 39.23 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.517056 CCAATTAAATTACCAGGTACTTTCGTT 58.483 33.333 16.28 10.70 34.60 3.85
1 2 7.362315 GCCAATTAAATTACCAGGTACTTTCGT 60.362 37.037 16.28 6.10 34.60 3.85
2 3 6.970613 GCCAATTAAATTACCAGGTACTTTCG 59.029 38.462 16.28 6.28 34.60 3.46
3 4 6.970613 CGCCAATTAAATTACCAGGTACTTTC 59.029 38.462 16.28 3.28 34.60 2.62
4 5 6.434965 ACGCCAATTAAATTACCAGGTACTTT 59.565 34.615 16.84 16.84 34.60 2.66
5 6 5.947566 ACGCCAATTAAATTACCAGGTACTT 59.052 36.000 0.00 0.00 34.60 2.24
6 7 5.355910 CACGCCAATTAAATTACCAGGTACT 59.644 40.000 0.00 0.00 43.88 2.73
7 8 5.575019 CACGCCAATTAAATTACCAGGTAC 58.425 41.667 0.00 0.00 0.00 3.34
8 9 4.096682 GCACGCCAATTAAATTACCAGGTA 59.903 41.667 0.00 0.00 0.00 3.08
9 10 3.119280 GCACGCCAATTAAATTACCAGGT 60.119 43.478 0.00 0.00 0.00 4.00
10 11 3.443976 GCACGCCAATTAAATTACCAGG 58.556 45.455 0.00 0.00 0.00 4.45
11 12 3.105203 CGCACGCCAATTAAATTACCAG 58.895 45.455 0.00 0.00 0.00 4.00
12 13 2.732597 GCGCACGCCAATTAAATTACCA 60.733 45.455 0.30 0.00 34.56 3.25
13 14 1.849829 GCGCACGCCAATTAAATTACC 59.150 47.619 0.30 0.00 34.56 2.85
14 15 1.511147 CGCGCACGCCAATTAAATTAC 59.489 47.619 8.75 0.00 37.98 1.89
15 16 1.397343 TCGCGCACGCCAATTAAATTA 59.603 42.857 8.75 0.00 39.84 1.40
16 17 0.169230 TCGCGCACGCCAATTAAATT 59.831 45.000 8.75 0.00 39.84 1.82
17 18 0.248054 CTCGCGCACGCCAATTAAAT 60.248 50.000 8.75 0.00 39.84 1.40
18 19 1.133664 CTCGCGCACGCCAATTAAA 59.866 52.632 8.75 0.00 39.84 1.52
19 20 2.781957 CTCGCGCACGCCAATTAA 59.218 55.556 8.75 0.00 39.84 1.40
20 21 3.860125 GCTCGCGCACGCCAATTA 61.860 61.111 8.75 0.00 39.84 1.40
26 27 2.914797 TTACTAGAGCTCGCGCACGC 62.915 60.000 8.75 9.28 39.84 5.34
27 28 0.317103 ATTACTAGAGCTCGCGCACG 60.317 55.000 8.75 0.00 39.10 5.34
28 29 1.518929 CAATTACTAGAGCTCGCGCAC 59.481 52.381 8.75 0.00 39.10 5.34
29 30 1.536072 CCAATTACTAGAGCTCGCGCA 60.536 52.381 8.75 0.00 39.10 6.09
30 31 1.132588 CCAATTACTAGAGCTCGCGC 58.867 55.000 8.37 0.00 0.00 6.86
31 32 2.386249 GACCAATTACTAGAGCTCGCG 58.614 52.381 8.37 0.00 0.00 5.87
32 33 2.100916 TGGACCAATTACTAGAGCTCGC 59.899 50.000 8.37 0.00 0.00 5.03
33 34 3.381908 ACTGGACCAATTACTAGAGCTCG 59.618 47.826 8.37 0.00 0.00 5.03
34 35 6.041069 ACATACTGGACCAATTACTAGAGCTC 59.959 42.308 5.27 5.27 0.00 4.09
35 36 5.900123 ACATACTGGACCAATTACTAGAGCT 59.100 40.000 0.00 0.00 0.00 4.09
36 37 6.163135 ACATACTGGACCAATTACTAGAGC 57.837 41.667 0.00 0.00 0.00 4.09
38 39 9.021807 GCTATACATACTGGACCAATTACTAGA 57.978 37.037 0.00 0.00 0.00 2.43
39 40 8.803235 TGCTATACATACTGGACCAATTACTAG 58.197 37.037 0.00 0.00 0.00 2.57
40 41 8.715190 TGCTATACATACTGGACCAATTACTA 57.285 34.615 0.00 0.00 0.00 1.82
41 42 7.612065 TGCTATACATACTGGACCAATTACT 57.388 36.000 0.00 0.00 0.00 2.24
42 43 6.369065 GCTGCTATACATACTGGACCAATTAC 59.631 42.308 0.00 0.00 0.00 1.89
43 44 6.042666 TGCTGCTATACATACTGGACCAATTA 59.957 38.462 0.00 0.00 0.00 1.40
44 45 5.163205 TGCTGCTATACATACTGGACCAATT 60.163 40.000 0.00 0.00 0.00 2.32
45 46 4.347876 TGCTGCTATACATACTGGACCAAT 59.652 41.667 0.00 0.00 0.00 3.16
46 47 3.709141 TGCTGCTATACATACTGGACCAA 59.291 43.478 0.00 0.00 0.00 3.67
47 48 3.304829 TGCTGCTATACATACTGGACCA 58.695 45.455 0.00 0.00 0.00 4.02
48 49 3.306364 CCTGCTGCTATACATACTGGACC 60.306 52.174 0.00 0.00 0.00 4.46
49 50 3.306364 CCCTGCTGCTATACATACTGGAC 60.306 52.174 0.00 0.00 0.00 4.02
50 51 2.899900 CCCTGCTGCTATACATACTGGA 59.100 50.000 0.00 0.00 0.00 3.86
51 52 2.613977 GCCCTGCTGCTATACATACTGG 60.614 54.545 0.00 0.00 0.00 4.00
52 53 2.613977 GGCCCTGCTGCTATACATACTG 60.614 54.545 0.00 0.00 0.00 2.74
53 54 1.625818 GGCCCTGCTGCTATACATACT 59.374 52.381 0.00 0.00 0.00 2.12
54 55 1.625818 AGGCCCTGCTGCTATACATAC 59.374 52.381 0.00 0.00 0.00 2.39
55 56 1.625315 CAGGCCCTGCTGCTATACATA 59.375 52.381 0.00 0.00 0.00 2.29
56 57 0.399454 CAGGCCCTGCTGCTATACAT 59.601 55.000 0.00 0.00 0.00 2.29
57 58 0.982852 ACAGGCCCTGCTGCTATACA 60.983 55.000 11.63 0.00 34.37 2.29
58 59 0.533755 CACAGGCCCTGCTGCTATAC 60.534 60.000 11.63 0.00 34.37 1.47
59 60 1.699054 CCACAGGCCCTGCTGCTATA 61.699 60.000 11.63 0.00 34.37 1.31
60 61 2.593978 CACAGGCCCTGCTGCTAT 59.406 61.111 11.63 0.00 34.37 2.97
61 62 3.720601 CCACAGGCCCTGCTGCTA 61.721 66.667 11.63 0.00 34.37 3.49
66 67 2.499303 ATTACACCCACAGGCCCTGC 62.499 60.000 11.63 0.00 34.37 4.85
67 68 0.916086 TATTACACCCACAGGCCCTG 59.084 55.000 9.83 9.83 36.11 4.45
68 69 1.676248 TTATTACACCCACAGGCCCT 58.324 50.000 0.00 0.00 36.11 5.19
69 70 2.693074 CAATTATTACACCCACAGGCCC 59.307 50.000 0.00 0.00 36.11 5.80
70 71 3.361786 ACAATTATTACACCCACAGGCC 58.638 45.455 0.00 0.00 36.11 5.19
71 72 6.320164 TCAATACAATTATTACACCCACAGGC 59.680 38.462 0.00 0.00 36.11 4.85
72 73 7.873719 TCAATACAATTATTACACCCACAGG 57.126 36.000 0.00 0.00 40.04 4.00
73 74 8.902806 ACATCAATACAATTATTACACCCACAG 58.097 33.333 0.00 0.00 0.00 3.66
74 75 8.815565 ACATCAATACAATTATTACACCCACA 57.184 30.769 0.00 0.00 0.00 4.17
75 76 8.349983 GGACATCAATACAATTATTACACCCAC 58.650 37.037 0.00 0.00 0.00 4.61
76 77 8.278639 AGGACATCAATACAATTATTACACCCA 58.721 33.333 0.00 0.00 0.00 4.51
77 78 8.691661 AGGACATCAATACAATTATTACACCC 57.308 34.615 0.00 0.00 0.00 4.61
78 79 9.337396 TGAGGACATCAATACAATTATTACACC 57.663 33.333 0.00 0.00 34.02 4.16
96 97 2.768253 TTGCGAACTGATGAGGACAT 57.232 45.000 0.00 0.00 39.67 3.06
97 98 2.542020 TTTGCGAACTGATGAGGACA 57.458 45.000 0.00 0.00 0.00 4.02
98 99 3.189287 ACAATTTGCGAACTGATGAGGAC 59.811 43.478 1.33 0.00 0.00 3.85
99 100 3.411446 ACAATTTGCGAACTGATGAGGA 58.589 40.909 1.33 0.00 0.00 3.71
100 101 3.837213 ACAATTTGCGAACTGATGAGG 57.163 42.857 1.33 0.00 0.00 3.86
101 102 6.183359 GCTTTAACAATTTGCGAACTGATGAG 60.183 38.462 1.33 0.00 0.00 2.90
102 103 5.629020 GCTTTAACAATTTGCGAACTGATGA 59.371 36.000 1.33 0.00 0.00 2.92
103 104 5.630680 AGCTTTAACAATTTGCGAACTGATG 59.369 36.000 1.33 0.00 0.00 3.07
104 105 5.772521 AGCTTTAACAATTTGCGAACTGAT 58.227 33.333 1.33 0.00 0.00 2.90
105 106 5.181690 AGCTTTAACAATTTGCGAACTGA 57.818 34.783 1.33 0.00 0.00 3.41
106 107 5.107875 GGAAGCTTTAACAATTTGCGAACTG 60.108 40.000 0.00 0.00 0.00 3.16
107 108 4.982295 GGAAGCTTTAACAATTTGCGAACT 59.018 37.500 0.00 0.00 0.00 3.01
108 109 4.742659 TGGAAGCTTTAACAATTTGCGAAC 59.257 37.500 0.00 0.00 0.00 3.95
109 110 4.938080 TGGAAGCTTTAACAATTTGCGAA 58.062 34.783 0.00 0.00 0.00 4.70
110 111 4.576216 TGGAAGCTTTAACAATTTGCGA 57.424 36.364 0.00 0.00 0.00 5.10
111 112 6.942886 TTATGGAAGCTTTAACAATTTGCG 57.057 33.333 0.00 0.00 0.00 4.85
112 113 7.746034 GCTTTTATGGAAGCTTTAACAATTTGC 59.254 33.333 0.00 0.00 46.55 3.68
161 162 4.944317 GCCAGAAGCAGAAGGTAAAATACT 59.056 41.667 0.00 0.00 42.97 2.12
210 211 1.065854 GTCAAGGTACTGCTGCAGGAT 60.066 52.381 31.00 15.45 40.86 3.24
290 291 6.411376 TCACCGTGAATCCACTAATTGTTAT 58.589 36.000 0.00 0.00 41.06 1.89
291 292 5.795972 TCACCGTGAATCCACTAATTGTTA 58.204 37.500 0.00 0.00 41.06 2.41
293 294 4.253685 CTCACCGTGAATCCACTAATTGT 58.746 43.478 2.19 0.00 41.06 2.71
309 310 0.879765 ACACGAGGAACTACTCACCG 59.120 55.000 0.00 0.00 41.55 4.94
603 610 9.406828 GGTGGTTTCACTTTAAGTAATGATTTC 57.593 33.333 0.00 0.00 43.17 2.17
612 619 7.562088 TCTTTTATGGGTGGTTTCACTTTAAGT 59.438 33.333 0.00 0.00 43.17 2.24
622 629 4.508584 GGAGTCCTCTTTTATGGGTGGTTT 60.509 45.833 0.41 0.00 0.00 3.27
625 632 2.576191 TGGAGTCCTCTTTTATGGGTGG 59.424 50.000 11.33 0.00 0.00 4.61
627 634 3.532102 AGTGGAGTCCTCTTTTATGGGT 58.468 45.455 11.33 0.00 0.00 4.51
645 652 8.669243 GTCCTCTTTTCTTAATGTCCATAAGTG 58.331 37.037 0.00 0.00 0.00 3.16
646 653 8.606830 AGTCCTCTTTTCTTAATGTCCATAAGT 58.393 33.333 0.00 0.00 0.00 2.24
647 654 9.103861 GAGTCCTCTTTTCTTAATGTCCATAAG 57.896 37.037 0.00 0.00 0.00 1.73
648 655 8.047310 GGAGTCCTCTTTTCTTAATGTCCATAA 58.953 37.037 0.41 0.00 0.00 1.90
649 656 7.182026 TGGAGTCCTCTTTTCTTAATGTCCATA 59.818 37.037 11.33 0.00 0.00 2.74
650 657 6.012508 TGGAGTCCTCTTTTCTTAATGTCCAT 60.013 38.462 11.33 0.00 0.00 3.41
651 658 5.309543 TGGAGTCCTCTTTTCTTAATGTCCA 59.690 40.000 11.33 0.00 0.00 4.02
652 659 5.644206 GTGGAGTCCTCTTTTCTTAATGTCC 59.356 44.000 11.33 0.00 0.00 4.02
653 660 6.468543 AGTGGAGTCCTCTTTTCTTAATGTC 58.531 40.000 11.33 0.00 0.00 3.06
654 661 6.441088 AGTGGAGTCCTCTTTTCTTAATGT 57.559 37.500 11.33 0.00 0.00 2.71
657 664 9.543231 TCTATAAGTGGAGTCCTCTTTTCTTAA 57.457 33.333 26.93 11.89 38.19 1.85
658 665 8.968969 GTCTATAAGTGGAGTCCTCTTTTCTTA 58.031 37.037 26.93 12.52 38.19 2.10
659 666 7.455008 TGTCTATAAGTGGAGTCCTCTTTTCTT 59.545 37.037 26.93 14.45 38.19 2.52
660 667 6.954684 TGTCTATAAGTGGAGTCCTCTTTTCT 59.045 38.462 26.93 16.27 38.19 2.52
661 668 7.171630 TGTCTATAAGTGGAGTCCTCTTTTC 57.828 40.000 26.93 15.05 38.19 2.29
695 702 6.824704 GGAGTCGGCTTAGATCTGTACTATAT 59.175 42.308 5.18 0.00 0.00 0.86
703 710 1.067821 GGTGGAGTCGGCTTAGATCTG 59.932 57.143 5.18 0.00 0.00 2.90
711 718 2.164332 TAAGGAGGGTGGAGTCGGCT 62.164 60.000 0.00 0.00 0.00 5.52
712 719 1.262640 TTAAGGAGGGTGGAGTCGGC 61.263 60.000 0.00 0.00 0.00 5.54
714 721 1.473434 GCATTAAGGAGGGTGGAGTCG 60.473 57.143 0.00 0.00 0.00 4.18
760 767 7.663905 TGCAGGAGAGAGAATAGAATAGACTAC 59.336 40.741 0.00 0.00 0.00 2.73
784 793 7.380065 GCGTATGAATATATAGCCTAGAGTTGC 59.620 40.741 0.00 0.00 0.00 4.17
827 836 3.329743 CAGATAATCTGCTTGGTTGCG 57.670 47.619 0.00 0.00 37.72 4.85
848 858 5.448496 GCGTACTTGAATTCATGCATGGTTA 60.448 40.000 25.97 12.49 0.00 2.85
950 967 8.977505 GTATTCAAGCTCTTATTTTTGCAACAA 58.022 29.630 0.00 0.00 0.00 2.83
1012 1029 8.887393 TGTTTCTTTAGTCCCCTTAGTAATTCT 58.113 33.333 0.00 0.00 0.00 2.40
1014 1031 9.516546 CTTGTTTCTTTAGTCCCCTTAGTAATT 57.483 33.333 0.00 0.00 0.00 1.40
1054 1071 5.129650 TCGGGAATATATTGGCGGATGAATA 59.870 40.000 1.78 0.00 0.00 1.75
1469 1486 5.109210 CAGTTGTCATAGCTGTTCGGAATA 58.891 41.667 0.00 0.00 33.41 1.75
1493 1510 7.083230 GGTCGTAATTACTATCTTGCTAGGTC 58.917 42.308 13.56 0.00 0.00 3.85
1524 1541 1.935873 CATGCCCAAGTACTCATCACG 59.064 52.381 0.00 0.00 0.00 4.35
1694 1711 7.679783 TGAGTTGAGAAAGAGATGGTTGAATA 58.320 34.615 0.00 0.00 0.00 1.75
1884 1923 3.820467 CACAGTGAATTCTTGGGCAACTA 59.180 43.478 7.05 0.00 0.00 2.24
1904 1943 1.880027 CCTGAACTTTAGTGCACCCAC 59.120 52.381 14.63 0.00 42.39 4.61
1905 1944 1.817740 GCCTGAACTTTAGTGCACCCA 60.818 52.381 14.63 0.00 28.83 4.51
1906 1945 0.881796 GCCTGAACTTTAGTGCACCC 59.118 55.000 14.63 0.00 28.83 4.61
1907 1946 0.881796 GGCCTGAACTTTAGTGCACC 59.118 55.000 14.63 0.00 28.83 5.01
1908 1947 0.881796 GGGCCTGAACTTTAGTGCAC 59.118 55.000 9.40 9.40 28.83 4.57
1909 1948 0.771127 AGGGCCTGAACTTTAGTGCA 59.229 50.000 4.50 0.00 31.56 4.57
1910 1949 1.911057 AAGGGCCTGAACTTTAGTGC 58.089 50.000 6.92 0.00 0.00 4.40
1914 1953 4.019051 GGGTACTAAAGGGCCTGAACTTTA 60.019 45.833 6.92 7.22 37.94 1.85
1915 1954 3.245158 GGGTACTAAAGGGCCTGAACTTT 60.245 47.826 6.92 6.31 39.91 2.66
1916 1955 2.307980 GGGTACTAAAGGGCCTGAACTT 59.692 50.000 6.92 0.00 0.00 2.66
1917 1956 1.914108 GGGTACTAAAGGGCCTGAACT 59.086 52.381 6.92 0.00 0.00 3.01
1918 1957 1.064906 GGGGTACTAAAGGGCCTGAAC 60.065 57.143 6.92 0.78 0.00 3.18
1919 1958 1.292085 GGGGTACTAAAGGGCCTGAA 58.708 55.000 6.92 0.00 0.00 3.02
1920 1959 0.979187 CGGGGTACTAAAGGGCCTGA 60.979 60.000 6.92 0.00 0.00 3.86
1921 1960 1.269703 ACGGGGTACTAAAGGGCCTG 61.270 60.000 6.92 0.00 0.00 4.85
1922 1961 0.339510 TACGGGGTACTAAAGGGCCT 59.660 55.000 0.00 0.00 0.00 5.19
1923 1962 0.465705 GTACGGGGTACTAAAGGGCC 59.534 60.000 0.00 0.00 36.25 5.80
1924 1963 1.489481 AGTACGGGGTACTAAAGGGC 58.511 55.000 6.65 0.00 45.99 5.19
1925 1964 2.833943 ACAAGTACGGGGTACTAAAGGG 59.166 50.000 8.70 1.05 46.96 3.95
1926 1965 3.853475 CACAAGTACGGGGTACTAAAGG 58.147 50.000 8.70 3.08 46.96 3.11
1927 1966 3.256558 GCACAAGTACGGGGTACTAAAG 58.743 50.000 8.70 5.46 46.96 1.85
1928 1967 2.632028 TGCACAAGTACGGGGTACTAAA 59.368 45.455 8.70 0.00 46.96 1.85
1929 1968 2.029110 GTGCACAAGTACGGGGTACTAA 60.029 50.000 13.17 0.00 46.96 2.24
1930 1969 1.545582 GTGCACAAGTACGGGGTACTA 59.454 52.381 13.17 0.00 46.96 1.82
1932 1971 2.831597 GTGCACAAGTACGGGGTAC 58.168 57.895 13.17 0.00 39.10 3.34
1939 1978 1.164041 AACTGCCCGTGCACAAGTAC 61.164 55.000 18.64 1.46 44.23 2.73
1940 1979 1.147376 AACTGCCCGTGCACAAGTA 59.853 52.632 18.64 5.67 44.23 2.24
1941 1980 2.124320 AACTGCCCGTGCACAAGT 60.124 55.556 18.64 11.29 44.23 3.16
1942 1981 2.332514 CAACTGCCCGTGCACAAG 59.667 61.111 18.64 8.27 44.23 3.16
1943 1982 3.898509 GCAACTGCCCGTGCACAA 61.899 61.111 18.64 0.00 44.23 3.33
1945 1984 4.332637 CTGCAACTGCCCGTGCAC 62.333 66.667 6.82 6.82 44.23 4.57
1949 1988 3.266686 TATGGCTGCAACTGCCCGT 62.267 57.895 12.53 4.67 45.86 5.28
1950 1989 2.438254 TATGGCTGCAACTGCCCG 60.438 61.111 12.53 0.00 45.86 6.13
1951 1990 2.418083 GGTATGGCTGCAACTGCCC 61.418 63.158 12.53 0.00 45.86 5.36
1952 1991 2.418083 GGGTATGGCTGCAACTGCC 61.418 63.158 8.48 8.48 46.46 4.85
1953 1992 2.764314 CGGGTATGGCTGCAACTGC 61.764 63.158 0.50 0.00 42.50 4.40
1954 1993 2.764314 GCGGGTATGGCTGCAACTG 61.764 63.158 0.50 0.00 0.00 3.16
1955 1994 2.438434 GCGGGTATGGCTGCAACT 60.438 61.111 0.50 0.00 0.00 3.16
1956 1995 3.876198 CGCGGGTATGGCTGCAAC 61.876 66.667 0.00 0.00 0.00 4.17
1963 2002 4.483243 ACCTTGCCGCGGGTATGG 62.483 66.667 29.38 19.24 38.29 2.74
1964 2003 2.895372 GACCTTGCCGCGGGTATG 60.895 66.667 29.38 9.21 35.77 2.39
1965 2004 3.081409 AGACCTTGCCGCGGGTAT 61.081 61.111 29.38 10.74 35.77 2.73
1966 2005 4.077184 CAGACCTTGCCGCGGGTA 62.077 66.667 29.38 3.98 35.77 3.69
1975 2014 1.002868 CTGTCCCCAGCAGACCTTG 60.003 63.158 0.00 0.00 36.12 3.61
1976 2015 3.488423 CTGTCCCCAGCAGACCTT 58.512 61.111 0.00 0.00 36.12 3.50
1984 2023 4.106925 GCTCCCAGCTGTCCCCAG 62.107 72.222 13.81 1.81 38.45 4.45
1985 2024 4.980592 TGCTCCCAGCTGTCCCCA 62.981 66.667 13.81 1.57 42.97 4.96
1986 2025 2.505364 ATTTGCTCCCAGCTGTCCCC 62.505 60.000 13.81 0.00 42.97 4.81
1987 2026 0.255890 TATTTGCTCCCAGCTGTCCC 59.744 55.000 13.81 0.00 42.97 4.46
1988 2027 1.383523 GTATTTGCTCCCAGCTGTCC 58.616 55.000 13.81 0.00 42.97 4.02
1989 2028 1.009829 CGTATTTGCTCCCAGCTGTC 58.990 55.000 13.81 0.00 42.97 3.51
1990 2029 0.613260 TCGTATTTGCTCCCAGCTGT 59.387 50.000 13.81 0.00 42.97 4.40
1991 2030 1.293924 CTCGTATTTGCTCCCAGCTG 58.706 55.000 6.78 6.78 42.97 4.24
1992 2031 0.179000 CCTCGTATTTGCTCCCAGCT 59.821 55.000 0.00 0.00 42.97 4.24
1993 2032 1.440145 GCCTCGTATTTGCTCCCAGC 61.440 60.000 0.00 0.00 42.82 4.85
1994 2033 1.154205 CGCCTCGTATTTGCTCCCAG 61.154 60.000 0.00 0.00 0.00 4.45
1995 2034 1.153449 CGCCTCGTATTTGCTCCCA 60.153 57.895 0.00 0.00 0.00 4.37
1996 2035 1.143183 TCGCCTCGTATTTGCTCCC 59.857 57.895 0.00 0.00 0.00 4.30
1997 2036 1.152383 GGTCGCCTCGTATTTGCTCC 61.152 60.000 0.00 0.00 0.00 4.70
1998 2037 0.459585 TGGTCGCCTCGTATTTGCTC 60.460 55.000 0.00 0.00 0.00 4.26
1999 2038 0.036765 TTGGTCGCCTCGTATTTGCT 60.037 50.000 0.00 0.00 0.00 3.91
2000 2039 0.373716 CTTGGTCGCCTCGTATTTGC 59.626 55.000 0.00 0.00 0.00 3.68
2001 2040 1.659098 GTCTTGGTCGCCTCGTATTTG 59.341 52.381 0.00 0.00 0.00 2.32
2002 2041 1.734707 CGTCTTGGTCGCCTCGTATTT 60.735 52.381 0.00 0.00 0.00 1.40
2003 2042 0.179145 CGTCTTGGTCGCCTCGTATT 60.179 55.000 0.00 0.00 0.00 1.89
2004 2043 1.028330 TCGTCTTGGTCGCCTCGTAT 61.028 55.000 0.00 0.00 0.00 3.06
2005 2044 1.672030 TCGTCTTGGTCGCCTCGTA 60.672 57.895 0.00 0.00 0.00 3.43
2006 2045 2.981909 TCGTCTTGGTCGCCTCGT 60.982 61.111 0.00 0.00 0.00 4.18
2007 2046 2.504244 GTCGTCTTGGTCGCCTCG 60.504 66.667 0.00 0.00 0.00 4.63
2008 2047 0.802607 GATGTCGTCTTGGTCGCCTC 60.803 60.000 0.00 0.00 0.00 4.70
2009 2048 1.215647 GATGTCGTCTTGGTCGCCT 59.784 57.895 0.00 0.00 0.00 5.52
2010 2049 1.078759 CAGATGTCGTCTTGGTCGCC 61.079 60.000 0.00 0.00 34.00 5.54
2011 2050 0.109272 TCAGATGTCGTCTTGGTCGC 60.109 55.000 0.00 0.00 34.00 5.19
2012 2051 1.901538 CTCAGATGTCGTCTTGGTCG 58.098 55.000 0.00 0.00 34.00 4.79
2013 2052 1.634702 GCTCAGATGTCGTCTTGGTC 58.365 55.000 0.00 0.00 34.00 4.02
2014 2053 0.247736 GGCTCAGATGTCGTCTTGGT 59.752 55.000 0.00 0.00 34.00 3.67
2015 2054 0.803768 CGGCTCAGATGTCGTCTTGG 60.804 60.000 0.00 0.00 34.00 3.61
2016 2055 0.803768 CCGGCTCAGATGTCGTCTTG 60.804 60.000 0.00 0.00 34.00 3.02
2017 2056 1.251527 ACCGGCTCAGATGTCGTCTT 61.252 55.000 0.00 0.00 34.00 3.01
2018 2057 0.393944 TACCGGCTCAGATGTCGTCT 60.394 55.000 0.00 0.00 37.80 4.18
2019 2058 0.454600 TTACCGGCTCAGATGTCGTC 59.545 55.000 0.00 0.00 0.00 4.20
2020 2059 1.067212 GATTACCGGCTCAGATGTCGT 59.933 52.381 0.00 0.00 0.00 4.34
2021 2060 1.067060 TGATTACCGGCTCAGATGTCG 59.933 52.381 0.00 0.00 0.00 4.35
2022 2061 2.362397 TCTGATTACCGGCTCAGATGTC 59.638 50.000 21.65 3.39 42.17 3.06
2023 2062 2.363680 CTCTGATTACCGGCTCAGATGT 59.636 50.000 24.21 0.00 45.01 3.06
2024 2063 2.625314 TCTCTGATTACCGGCTCAGATG 59.375 50.000 24.21 19.12 45.01 2.90
2025 2064 2.950781 TCTCTGATTACCGGCTCAGAT 58.049 47.619 24.21 4.30 45.01 2.90
2026 2065 2.427453 GTTCTCTGATTACCGGCTCAGA 59.573 50.000 23.14 23.14 44.20 3.27
2027 2066 2.166459 TGTTCTCTGATTACCGGCTCAG 59.834 50.000 18.52 18.52 40.20 3.35
2028 2067 2.176045 TGTTCTCTGATTACCGGCTCA 58.824 47.619 0.00 0.90 0.00 4.26
2029 2068 2.961526 TGTTCTCTGATTACCGGCTC 57.038 50.000 0.00 0.00 0.00 4.70
2030 2069 4.202264 CCTTATGTTCTCTGATTACCGGCT 60.202 45.833 0.00 0.00 0.00 5.52
2031 2070 4.058817 CCTTATGTTCTCTGATTACCGGC 58.941 47.826 0.00 0.00 0.00 6.13
2032 2071 4.058817 GCCTTATGTTCTCTGATTACCGG 58.941 47.826 0.00 0.00 0.00 5.28
2033 2072 4.508124 GTGCCTTATGTTCTCTGATTACCG 59.492 45.833 0.00 0.00 0.00 4.02
2034 2073 4.508124 CGTGCCTTATGTTCTCTGATTACC 59.492 45.833 0.00 0.00 0.00 2.85
2035 2074 5.109903 ACGTGCCTTATGTTCTCTGATTAC 58.890 41.667 0.00 0.00 0.00 1.89
2036 2075 5.339008 ACGTGCCTTATGTTCTCTGATTA 57.661 39.130 0.00 0.00 0.00 1.75
2037 2076 4.207891 ACGTGCCTTATGTTCTCTGATT 57.792 40.909 0.00 0.00 0.00 2.57
2038 2077 3.895232 ACGTGCCTTATGTTCTCTGAT 57.105 42.857 0.00 0.00 0.00 2.90
2039 2078 3.006430 TCAACGTGCCTTATGTTCTCTGA 59.994 43.478 0.00 0.00 36.38 3.27
2040 2079 3.325870 TCAACGTGCCTTATGTTCTCTG 58.674 45.455 0.00 0.00 36.38 3.35
2041 2080 3.589988 CTCAACGTGCCTTATGTTCTCT 58.410 45.455 0.00 0.00 36.38 3.10
2042 2081 2.094417 GCTCAACGTGCCTTATGTTCTC 59.906 50.000 0.00 0.00 36.38 2.87
2043 2082 2.076863 GCTCAACGTGCCTTATGTTCT 58.923 47.619 0.00 0.00 36.38 3.01
2044 2083 1.130561 GGCTCAACGTGCCTTATGTTC 59.869 52.381 8.09 0.00 46.38 3.18
2045 2084 1.165270 GGCTCAACGTGCCTTATGTT 58.835 50.000 8.09 0.00 46.38 2.71
2046 2085 2.854522 GGCTCAACGTGCCTTATGT 58.145 52.632 8.09 0.00 46.38 2.29
2063 2102 4.740822 CAAGGACCTTGCCGGGGG 62.741 72.222 21.10 0.00 34.63 5.40
2070 2109 1.750399 CATCCCGGCAAGGACCTTG 60.750 63.158 27.16 27.16 45.00 3.61
2071 2110 2.677228 CATCCCGGCAAGGACCTT 59.323 61.111 0.00 0.00 45.00 3.50
2072 2111 3.411517 CCATCCCGGCAAGGACCT 61.412 66.667 0.00 0.00 45.00 3.85
2093 2132 2.439156 ATCTTGCCAGGGCTTCGC 60.439 61.111 12.19 0.00 42.51 4.70
2094 2133 1.821332 GGATCTTGCCAGGGCTTCG 60.821 63.158 12.19 0.08 42.51 3.79
2095 2134 0.033699 AAGGATCTTGCCAGGGCTTC 60.034 55.000 12.19 3.61 42.51 3.86
2096 2135 0.324091 CAAGGATCTTGCCAGGGCTT 60.324 55.000 12.19 0.00 42.51 4.35
2097 2136 1.305623 CAAGGATCTTGCCAGGGCT 59.694 57.895 12.19 0.00 42.51 5.19
2098 2137 2.421399 GCAAGGATCTTGCCAGGGC 61.421 63.158 18.66 2.62 39.38 5.19
2099 2138 3.930504 GCAAGGATCTTGCCAGGG 58.069 61.111 18.66 0.00 39.38 4.45
2104 2143 0.753111 AATCCCGGCAAGGATCTTGC 60.753 55.000 20.54 20.54 46.31 4.01
2105 2144 1.767759 AAATCCCGGCAAGGATCTTG 58.232 50.000 7.17 3.50 46.31 3.02
2106 2145 2.532250 AAAATCCCGGCAAGGATCTT 57.468 45.000 7.17 0.00 46.31 2.40
2107 2146 2.532250 AAAAATCCCGGCAAGGATCT 57.468 45.000 7.17 0.00 46.31 2.75
2123 2162 0.391661 TTGCCGGTGCTTTGCAAAAA 60.392 45.000 13.84 1.54 41.47 1.94
2124 2163 0.809241 CTTGCCGGTGCTTTGCAAAA 60.809 50.000 13.84 0.00 43.69 2.44
2125 2164 1.227205 CTTGCCGGTGCTTTGCAAA 60.227 52.632 12.14 12.14 43.69 3.68
2126 2165 2.124060 TCTTGCCGGTGCTTTGCAA 61.124 52.632 1.90 0.00 41.47 4.08
2127 2166 2.518112 TCTTGCCGGTGCTTTGCA 60.518 55.556 1.90 0.00 38.71 4.08
2128 2167 2.050077 GTCTTGCCGGTGCTTTGC 60.050 61.111 1.90 0.00 38.71 3.68
2129 2168 1.526575 ATGGTCTTGCCGGTGCTTTG 61.527 55.000 1.90 0.00 41.21 2.77
2130 2169 1.228552 ATGGTCTTGCCGGTGCTTT 60.229 52.632 1.90 0.00 41.21 3.51
2131 2170 1.675641 GATGGTCTTGCCGGTGCTT 60.676 57.895 1.90 0.00 41.21 3.91
2132 2171 2.045926 GATGGTCTTGCCGGTGCT 60.046 61.111 1.90 0.00 41.21 4.40
2133 2172 2.045926 AGATGGTCTTGCCGGTGC 60.046 61.111 1.90 0.00 41.21 5.01
2134 2173 1.450312 GGAGATGGTCTTGCCGGTG 60.450 63.158 1.90 0.00 41.21 4.94
2135 2174 2.670148 GGGAGATGGTCTTGCCGGT 61.670 63.158 1.90 0.00 41.21 5.28
2136 2175 1.915078 AAGGGAGATGGTCTTGCCGG 61.915 60.000 0.00 0.00 41.21 6.13
2137 2176 0.745845 CAAGGGAGATGGTCTTGCCG 60.746 60.000 0.00 0.00 41.21 5.69
2138 2177 0.620556 TCAAGGGAGATGGTCTTGCC 59.379 55.000 0.00 0.00 38.13 4.52
2139 2178 1.407989 CCTCAAGGGAGATGGTCTTGC 60.408 57.143 0.00 0.00 44.26 4.01
2140 2179 1.912043 ACCTCAAGGGAGATGGTCTTG 59.088 52.381 0.29 0.00 44.26 3.02
2141 2180 2.307098 CAACCTCAAGGGAGATGGTCTT 59.693 50.000 0.29 0.00 44.26 3.01
2142 2181 1.912043 CAACCTCAAGGGAGATGGTCT 59.088 52.381 0.29 0.00 44.26 3.85
2143 2182 1.909302 TCAACCTCAAGGGAGATGGTC 59.091 52.381 0.29 0.00 44.26 4.02
2144 2183 1.912043 CTCAACCTCAAGGGAGATGGT 59.088 52.381 0.29 0.00 44.26 3.55
2145 2184 2.170187 CTCTCAACCTCAAGGGAGATGG 59.830 54.545 0.29 0.00 44.26 3.51
2146 2185 2.419851 GCTCTCAACCTCAAGGGAGATG 60.420 54.545 0.29 0.92 44.26 2.90
2147 2186 1.836802 GCTCTCAACCTCAAGGGAGAT 59.163 52.381 0.29 0.00 44.26 2.75
2148 2187 1.203237 AGCTCTCAACCTCAAGGGAGA 60.203 52.381 0.29 3.32 44.26 3.71
2149 2188 1.206849 GAGCTCTCAACCTCAAGGGAG 59.793 57.143 6.43 0.00 40.27 4.30
2150 2189 1.203237 AGAGCTCTCAACCTCAAGGGA 60.203 52.381 11.45 0.00 40.27 4.20
2151 2190 1.066286 CAGAGCTCTCAACCTCAAGGG 60.066 57.143 14.96 0.00 40.27 3.95
2152 2191 1.898472 TCAGAGCTCTCAACCTCAAGG 59.102 52.381 14.96 0.00 42.17 3.61
2153 2192 2.958213 GTCAGAGCTCTCAACCTCAAG 58.042 52.381 14.96 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.