Multiple sequence alignment - TraesCS4D01G153900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G153900 chr4D 100.000 5898 0 0 1 5898 197775761 197769864 0.000000e+00 10892.0
1 TraesCS4D01G153900 chr4D 96.970 66 2 0 3766 3831 450203791 450203726 1.740000e-20 111.0
2 TraesCS4D01G153900 chr4D 85.526 76 10 1 386 460 40828751 40828676 1.760000e-10 78.7
3 TraesCS4D01G153900 chr4B 93.240 3062 96 37 1 3034 329817964 329814986 0.000000e+00 4405.0
4 TraesCS4D01G153900 chr4B 96.900 2097 42 8 3377 5462 329814991 329812907 0.000000e+00 3491.0
5 TraesCS4D01G153900 chr4B 91.587 416 23 4 5462 5868 329802940 329802528 1.110000e-156 564.0
6 TraesCS4D01G153900 chr4B 76.617 402 67 13 328 706 662535253 662535650 4.660000e-46 196.0
7 TraesCS4D01G153900 chr4B 83.019 106 17 1 802 906 598453515 598453410 1.750000e-15 95.3
8 TraesCS4D01G153900 chr4B 77.181 149 29 5 793 939 37119719 37119574 1.360000e-11 82.4
9 TraesCS4D01G153900 chr4A 94.683 2351 76 23 703 3034 327253588 327255908 0.000000e+00 3603.0
10 TraesCS4D01G153900 chr4A 96.181 838 22 3 4348 5180 327260142 327260974 0.000000e+00 1362.0
11 TraesCS4D01G153900 chr4A 95.009 561 25 3 3758 4317 327259583 327260141 0.000000e+00 878.0
12 TraesCS4D01G153900 chr4A 90.799 576 43 6 5333 5898 327277975 327278550 0.000000e+00 761.0
13 TraesCS4D01G153900 chr4A 96.601 353 10 2 3031 3382 192624508 192624859 8.520000e-163 584.0
14 TraesCS4D01G153900 chr4A 96.552 348 12 0 3377 3724 327255903 327256250 1.430000e-160 577.0
15 TraesCS4D01G153900 chr4A 91.824 159 12 1 5177 5335 327265416 327265573 2.770000e-53 220.0
16 TraesCS4D01G153900 chr2D 86.448 701 64 6 1 690 271497666 271496986 0.000000e+00 739.0
17 TraesCS4D01G153900 chr2D 80.444 721 123 14 1 706 87675687 87674970 8.700000e-148 534.0
18 TraesCS4D01G153900 chr2D 81.598 413 58 8 239 649 496348200 496348596 5.700000e-85 326.0
19 TraesCS4D01G153900 chr2D 91.852 135 10 1 4064 4197 271524200 271524334 2.810000e-43 187.0
20 TraesCS4D01G153900 chr2D 91.852 135 9 2 4064 4197 271527344 271527477 2.810000e-43 187.0
21 TraesCS4D01G153900 chr2D 83.636 110 16 2 794 901 376051415 376051306 1.050000e-17 102.0
22 TraesCS4D01G153900 chr2D 78.523 149 22 9 814 957 184132018 184131875 8.140000e-14 89.8
23 TraesCS4D01G153900 chr2A 85.857 700 71 5 1 690 350836766 350837447 0.000000e+00 719.0
24 TraesCS4D01G153900 chr2A 91.111 135 11 1 4064 4197 12352554 12352688 1.310000e-41 182.0
25 TraesCS4D01G153900 chr2A 91.111 135 11 1 4064 4197 12357226 12357360 1.310000e-41 182.0
26 TraesCS4D01G153900 chr2A 95.455 66 3 0 3766 3831 569191476 569191411 8.080000e-19 106.0
27 TraesCS4D01G153900 chr5D 83.333 690 97 10 1 675 29456044 29456730 6.490000e-174 621.0
28 TraesCS4D01G153900 chr5D 80.892 157 24 5 802 957 476753400 476753551 1.040000e-22 119.0
29 TraesCS4D01G153900 chr5D 75.107 233 35 15 235 460 254535710 254535926 2.930000e-13 87.9
30 TraesCS4D01G153900 chr5D 87.324 71 8 1 391 460 551022188 551022258 4.900000e-11 80.5
31 TraesCS4D01G153900 chr1A 96.802 344 11 0 3034 3377 479829876 479830219 5.130000e-160 575.0
32 TraesCS4D01G153900 chr1A 96.011 351 14 0 3032 3382 333620913 333621263 6.630000e-159 571.0
33 TraesCS4D01G153900 chr1A 95.894 341 14 0 3037 3377 292759653 292759313 2.400000e-153 553.0
34 TraesCS4D01G153900 chr1A 81.955 399 63 6 296 690 289940364 289940757 4.410000e-86 329.0
35 TraesCS4D01G153900 chr1A 85.897 78 10 1 5719 5796 442477395 442477319 1.360000e-11 82.4
36 TraesCS4D01G153900 chr1A 94.231 52 2 1 390 440 14531394 14531445 1.760000e-10 78.7
37 TraesCS4D01G153900 chr3D 81.497 708 109 10 1 690 553473310 553474013 3.990000e-156 562.0
38 TraesCS4D01G153900 chr3D 95.601 341 15 0 3037 3377 84504208 84503868 1.120000e-151 547.0
39 TraesCS4D01G153900 chr3D 83.962 530 47 17 5358 5853 557056 556531 1.920000e-129 473.0
40 TraesCS4D01G153900 chr3D 81.529 157 25 3 802 957 460246726 460246879 6.200000e-25 126.0
41 TraesCS4D01G153900 chr7D 95.652 345 14 1 3037 3380 324339338 324338994 2.400000e-153 553.0
42 TraesCS4D01G153900 chr7D 95.640 344 14 1 3037 3380 311891305 311890963 8.640000e-153 551.0
43 TraesCS4D01G153900 chr7D 95.894 341 13 1 3037 3377 591216283 591216622 8.640000e-153 551.0
44 TraesCS4D01G153900 chr7D 96.970 66 2 0 3766 3831 119897077 119897012 1.740000e-20 111.0
45 TraesCS4D01G153900 chr7D 89.011 91 7 3 3743 3831 419793222 419793133 6.250000e-20 110.0
46 TraesCS4D01G153900 chr7D 78.947 152 26 5 809 957 192918909 192918761 1.350000e-16 99.0
47 TraesCS4D01G153900 chr7D 77.711 166 34 3 794 956 631878521 631878686 1.350000e-16 99.0
48 TraesCS4D01G153900 chr7D 89.655 58 5 1 793 849 60301209 60301152 8.200000e-09 73.1
49 TraesCS4D01G153900 chr7D 87.931 58 6 1 794 850 499960758 499960701 3.810000e-07 67.6
50 TraesCS4D01G153900 chr6D 95.601 341 15 0 3037 3377 153866388 153866728 1.120000e-151 547.0
51 TraesCS4D01G153900 chr6A 82.957 487 67 14 239 718 594252361 594252838 5.460000e-115 425.0
52 TraesCS4D01G153900 chr6A 80.952 168 25 7 794 957 166654378 166654214 6.200000e-25 126.0
53 TraesCS4D01G153900 chr6A 91.228 57 4 1 793 848 49501444 49501500 6.340000e-10 76.8
54 TraesCS4D01G153900 chr2B 82.646 461 72 8 238 690 499588733 499588273 9.210000e-108 401.0
55 TraesCS4D01G153900 chr2B 82.381 420 69 5 238 654 44750193 44749776 1.560000e-95 361.0
56 TraesCS4D01G153900 chr2B 94.030 67 4 0 3765 3831 764537698 764537632 1.050000e-17 102.0
57 TraesCS4D01G153900 chr3B 81.545 466 71 7 52 503 64595572 64595108 2.600000e-98 370.0
58 TraesCS4D01G153900 chr3B 80.000 380 68 8 331 706 677308164 677308539 2.090000e-69 274.0
59 TraesCS4D01G153900 chr3B 90.210 143 12 2 4064 4205 323324947 323324806 1.010000e-42 185.0
60 TraesCS4D01G153900 chr5A 78.444 450 88 8 246 690 17381162 17380717 9.670000e-73 285.0
61 TraesCS4D01G153900 chr5A 91.429 140 11 1 4064 4202 444030282 444030143 2.170000e-44 191.0
62 TraesCS4D01G153900 chr5B 80.000 380 68 8 331 706 597231694 597231319 2.090000e-69 274.0
63 TraesCS4D01G153900 chr6B 79.737 380 69 8 331 706 504288813 504288438 9.740000e-68 268.0
64 TraesCS4D01G153900 chr6B 81.150 313 51 8 289 598 672195731 672195424 1.640000e-60 244.0
65 TraesCS4D01G153900 chr6B 79.231 260 41 8 433 690 321263515 321263763 1.020000e-37 169.0
66 TraesCS4D01G153900 chr6B 79.085 153 25 5 806 956 424302901 424303048 1.350000e-16 99.0
67 TraesCS4D01G153900 chr6B 78.947 152 23 8 806 956 424080192 424080335 1.750000e-15 95.3
68 TraesCS4D01G153900 chr1D 81.752 274 45 5 433 706 355692338 355692606 2.140000e-54 224.0
69 TraesCS4D01G153900 chr1D 78.862 123 14 1 5686 5796 342852693 342852571 8.200000e-09 73.1
70 TraesCS4D01G153900 chr7A 92.366 131 9 1 4064 4193 391897563 391897433 1.010000e-42 185.0
71 TraesCS4D01G153900 chr7A 89.773 88 6 3 3744 3829 513221020 513221106 6.250000e-20 110.0
72 TraesCS4D01G153900 chr1B 91.781 73 6 0 3759 3831 493871873 493871945 1.050000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G153900 chr4D 197769864 197775761 5897 True 10892 10892 100.00000 1 5898 1 chr4D.!!$R2 5897
1 TraesCS4D01G153900 chr4B 329812907 329817964 5057 True 3948 4405 95.07000 1 5462 2 chr4B.!!$R4 5461
2 TraesCS4D01G153900 chr4A 327253588 327260974 7386 False 1605 3603 95.60625 703 5180 4 chr4A.!!$F4 4477
3 TraesCS4D01G153900 chr4A 327277975 327278550 575 False 761 761 90.79900 5333 5898 1 chr4A.!!$F3 565
4 TraesCS4D01G153900 chr2D 271496986 271497666 680 True 739 739 86.44800 1 690 1 chr2D.!!$R3 689
5 TraesCS4D01G153900 chr2D 87674970 87675687 717 True 534 534 80.44400 1 706 1 chr2D.!!$R1 705
6 TraesCS4D01G153900 chr2A 350836766 350837447 681 False 719 719 85.85700 1 690 1 chr2A.!!$F3 689
7 TraesCS4D01G153900 chr5D 29456044 29456730 686 False 621 621 83.33300 1 675 1 chr5D.!!$F1 674
8 TraesCS4D01G153900 chr3D 553473310 553474013 703 False 562 562 81.49700 1 690 1 chr3D.!!$F2 689
9 TraesCS4D01G153900 chr3D 556531 557056 525 True 473 473 83.96200 5358 5853 1 chr3D.!!$R1 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.586319 AACGCAATGACCGAAGTGTG 59.414 50.000 0.00 0.00 0.0 3.82 F
379 395 2.118679 TGTGGAGGATGGGTATGAGTG 58.881 52.381 0.00 0.00 0.0 3.51 F
1676 1715 1.470979 CCGGTATTCCAGTGAACTCCG 60.471 57.143 0.00 10.79 43.5 4.63 F
3129 3182 0.037605 GTAACACCCCCTCTCACGTG 60.038 60.000 9.94 9.94 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1504 1540 0.038159 AACTACGAGACTGCAGCCAC 60.038 55.000 15.27 0.0 0.0 5.01 R
1685 1724 5.889853 AGGCACAAATCATTATGAGACATGT 59.110 36.000 0.00 0.0 0.0 3.21 R
3162 3215 0.026027 CGCGTACCGTCACTCTCTAC 59.974 60.000 0.00 0.0 0.0 2.59 R
5031 8386 4.261994 CCACCCAAAACTAGACAACCAATG 60.262 45.833 0.00 0.0 0.0 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 5.896073 AAATCGAGATGGAGGGAGTATTT 57.104 39.130 0.00 0.00 0.00 1.40
71 72 9.170890 AGGGAGTATTTATTTCATAGTCCATGA 57.829 33.333 13.44 0.00 44.17 3.07
98 99 1.478510 GATGATCGGACTGACCACACT 59.521 52.381 0.00 0.00 38.90 3.55
183 184 0.586319 AACGCAATGACCGAAGTGTG 59.414 50.000 0.00 0.00 0.00 3.82
211 212 2.235898 GAGGGCCTCATGATAGATCCAC 59.764 54.545 28.55 0.00 0.00 4.02
379 395 2.118679 TGTGGAGGATGGGTATGAGTG 58.881 52.381 0.00 0.00 0.00 3.51
431 450 7.929159 TCAAATATCATGCGATGAAGCTAAAA 58.071 30.769 0.00 0.00 43.50 1.52
442 461 6.399986 GCGATGAAGCTAAAAACAACATTTCC 60.400 38.462 0.00 0.00 0.00 3.13
466 485 6.077197 CGACATTGTGCGAGAATTTCTTAAA 58.923 36.000 0.00 0.00 0.00 1.52
812 832 7.617533 AAAAATACTCCGTCGTTTCAAAATG 57.382 32.000 0.00 0.00 0.00 2.32
822 842 6.689669 CCGTCGTTTCAAAATGTAAGTCTTTT 59.310 34.615 0.00 0.00 0.00 2.27
964 984 5.602978 AGGAACATAGGGAGTAGGTTACATG 59.397 44.000 0.00 0.00 38.52 3.21
1250 1271 3.342370 CTCGCCACGTCAGCAGCTA 62.342 63.158 0.00 0.00 0.00 3.32
1382 1418 2.380064 TGGAGGAAAACTGCATTGGT 57.620 45.000 0.00 0.00 43.13 3.67
1383 1419 2.676748 TGGAGGAAAACTGCATTGGTT 58.323 42.857 0.00 0.00 43.13 3.67
1384 1420 3.037549 TGGAGGAAAACTGCATTGGTTT 58.962 40.909 0.00 0.00 43.13 3.27
1385 1421 4.219115 TGGAGGAAAACTGCATTGGTTTA 58.781 39.130 3.29 0.00 43.13 2.01
1386 1422 4.837860 TGGAGGAAAACTGCATTGGTTTAT 59.162 37.500 3.29 0.00 43.13 1.40
1390 1426 5.071653 AGGAAAACTGCATTGGTTTATTGGT 59.928 36.000 3.29 0.00 36.09 3.67
1674 1713 3.181478 CCTACCGGTATTCCAGTGAACTC 60.181 52.174 16.25 0.00 32.13 3.01
1675 1714 1.553704 ACCGGTATTCCAGTGAACTCC 59.446 52.381 4.49 0.00 32.13 3.85
1676 1715 1.470979 CCGGTATTCCAGTGAACTCCG 60.471 57.143 0.00 10.79 43.50 4.63
1677 1716 1.475280 CGGTATTCCAGTGAACTCCGA 59.525 52.381 11.77 0.00 45.07 4.55
1678 1717 2.100916 CGGTATTCCAGTGAACTCCGAT 59.899 50.000 11.77 0.00 45.07 4.18
1679 1718 3.718815 GGTATTCCAGTGAACTCCGATC 58.281 50.000 0.00 0.00 32.13 3.69
1680 1719 3.132289 GGTATTCCAGTGAACTCCGATCA 59.868 47.826 0.00 0.00 32.13 2.92
1681 1720 3.533606 ATTCCAGTGAACTCCGATCAG 57.466 47.619 0.00 0.00 32.13 2.90
1682 1721 1.924731 TCCAGTGAACTCCGATCAGT 58.075 50.000 0.00 0.00 0.00 3.41
1683 1722 2.248248 TCCAGTGAACTCCGATCAGTT 58.752 47.619 0.00 0.00 39.43 3.16
1684 1723 3.427573 TCCAGTGAACTCCGATCAGTTA 58.572 45.455 0.00 0.00 36.71 2.24
1685 1724 3.830178 TCCAGTGAACTCCGATCAGTTAA 59.170 43.478 0.00 0.00 36.71 2.01
1811 1862 3.777478 CATCTACCATGAAACGTACGGT 58.223 45.455 21.06 11.03 0.00 4.83
2394 2445 1.347243 TGAGCTATGGGATGCTGGCA 61.347 55.000 0.00 0.00 39.91 4.92
2429 2480 7.472334 AATGCTTCTTGGTCAGAATGTAAAT 57.528 32.000 0.00 0.00 40.95 1.40
2814 2865 5.882557 AGCAGTGATTTCATAAGTGGTAAGG 59.117 40.000 0.00 0.00 0.00 2.69
2909 2962 2.289882 TGTGTGGCTGATTTGGAGAGAG 60.290 50.000 0.00 0.00 0.00 3.20
2910 2963 1.280133 TGTGGCTGATTTGGAGAGAGG 59.720 52.381 0.00 0.00 0.00 3.69
2952 3005 4.873259 GCTTTCTCGCTTCTTATTCTCCTT 59.127 41.667 0.00 0.00 0.00 3.36
2992 3045 2.588925 ACTTGGTTAGGGGCTAGGAT 57.411 50.000 0.00 0.00 0.00 3.24
3051 3104 9.838339 ACTAATTACTATTAAGCTTCATGCACT 57.162 29.630 0.00 0.00 45.94 4.40
3054 3107 7.715265 TTACTATTAAGCTTCATGCACTAGC 57.285 36.000 0.00 8.13 45.94 3.42
3055 3108 5.059833 ACTATTAAGCTTCATGCACTAGCC 58.940 41.667 0.00 0.00 45.94 3.93
3056 3109 3.348647 TTAAGCTTCATGCACTAGCCA 57.651 42.857 0.00 0.00 45.94 4.75
3057 3110 2.205022 AAGCTTCATGCACTAGCCAA 57.795 45.000 11.63 0.00 45.94 4.52
3058 3111 1.457346 AGCTTCATGCACTAGCCAAC 58.543 50.000 11.63 0.00 45.94 3.77
3059 3112 0.097674 GCTTCATGCACTAGCCAACG 59.902 55.000 5.46 0.00 42.31 4.10
3060 3113 0.097674 CTTCATGCACTAGCCAACGC 59.902 55.000 0.00 0.00 41.13 4.84
3061 3114 0.605050 TTCATGCACTAGCCAACGCA 60.605 50.000 0.00 0.00 41.13 5.24
3062 3115 0.605050 TCATGCACTAGCCAACGCAA 60.605 50.000 0.00 0.00 41.13 4.85
3063 3116 0.454957 CATGCACTAGCCAACGCAAC 60.455 55.000 0.00 0.00 41.13 4.17
3064 3117 1.586154 ATGCACTAGCCAACGCAACC 61.586 55.000 0.00 0.00 41.13 3.77
3065 3118 2.258013 GCACTAGCCAACGCAACCA 61.258 57.895 0.00 0.00 37.52 3.67
3066 3119 1.791103 GCACTAGCCAACGCAACCAA 61.791 55.000 0.00 0.00 37.52 3.67
3067 3120 0.665835 CACTAGCCAACGCAACCAAA 59.334 50.000 0.00 0.00 37.52 3.28
3068 3121 1.066303 CACTAGCCAACGCAACCAAAA 59.934 47.619 0.00 0.00 37.52 2.44
3069 3122 1.336755 ACTAGCCAACGCAACCAAAAG 59.663 47.619 0.00 0.00 37.52 2.27
3070 3123 1.336755 CTAGCCAACGCAACCAAAAGT 59.663 47.619 0.00 0.00 37.52 2.66
3071 3124 0.102300 AGCCAACGCAACCAAAAGTC 59.898 50.000 0.00 0.00 37.52 3.01
3072 3125 0.102300 GCCAACGCAACCAAAAGTCT 59.898 50.000 0.00 0.00 34.03 3.24
3073 3126 1.838913 CCAACGCAACCAAAAGTCTG 58.161 50.000 0.00 0.00 0.00 3.51
3074 3127 1.403679 CCAACGCAACCAAAAGTCTGA 59.596 47.619 0.00 0.00 0.00 3.27
3075 3128 2.159310 CCAACGCAACCAAAAGTCTGAA 60.159 45.455 0.00 0.00 0.00 3.02
3076 3129 2.844122 ACGCAACCAAAAGTCTGAAC 57.156 45.000 0.00 0.00 0.00 3.18
3077 3130 2.365582 ACGCAACCAAAAGTCTGAACT 58.634 42.857 0.00 0.00 37.32 3.01
3078 3131 2.097466 ACGCAACCAAAAGTCTGAACTG 59.903 45.455 0.00 0.00 35.36 3.16
3079 3132 2.354510 CGCAACCAAAAGTCTGAACTGA 59.645 45.455 0.00 0.00 35.36 3.41
3080 3133 3.003689 CGCAACCAAAAGTCTGAACTGAT 59.996 43.478 0.00 0.00 35.36 2.90
3081 3134 4.293415 GCAACCAAAAGTCTGAACTGATG 58.707 43.478 0.00 0.00 35.36 3.07
3082 3135 4.794003 GCAACCAAAAGTCTGAACTGATGG 60.794 45.833 7.83 7.83 43.11 3.51
3083 3136 4.437682 ACCAAAAGTCTGAACTGATGGA 57.562 40.909 13.68 0.00 41.39 3.41
3084 3137 4.792068 ACCAAAAGTCTGAACTGATGGAA 58.208 39.130 13.68 0.00 41.39 3.53
3085 3138 5.200483 ACCAAAAGTCTGAACTGATGGAAA 58.800 37.500 13.68 0.00 41.39 3.13
3086 3139 5.300286 ACCAAAAGTCTGAACTGATGGAAAG 59.700 40.000 13.68 0.00 41.39 2.62
3087 3140 5.278660 CCAAAAGTCTGAACTGATGGAAAGG 60.279 44.000 4.65 0.00 41.39 3.11
3088 3141 3.710209 AGTCTGAACTGATGGAAAGGG 57.290 47.619 0.00 0.00 33.32 3.95
3089 3142 2.087646 GTCTGAACTGATGGAAAGGGC 58.912 52.381 0.00 0.00 0.00 5.19
3090 3143 1.988107 TCTGAACTGATGGAAAGGGCT 59.012 47.619 0.00 0.00 0.00 5.19
3091 3144 3.055094 GTCTGAACTGATGGAAAGGGCTA 60.055 47.826 0.00 0.00 0.00 3.93
3092 3145 3.198635 TCTGAACTGATGGAAAGGGCTAG 59.801 47.826 0.00 0.00 0.00 3.42
3093 3146 2.912956 TGAACTGATGGAAAGGGCTAGT 59.087 45.455 0.00 0.00 0.00 2.57
3094 3147 3.274288 GAACTGATGGAAAGGGCTAGTG 58.726 50.000 0.00 0.00 0.00 2.74
3095 3148 1.065126 ACTGATGGAAAGGGCTAGTGC 60.065 52.381 0.00 0.00 38.76 4.40
3096 3149 0.991146 TGATGGAAAGGGCTAGTGCA 59.009 50.000 0.00 0.00 41.91 4.57
3097 3150 1.354031 TGATGGAAAGGGCTAGTGCAA 59.646 47.619 0.00 0.00 41.91 4.08
3098 3151 2.025037 TGATGGAAAGGGCTAGTGCAAT 60.025 45.455 0.00 0.00 41.91 3.56
3099 3152 2.128771 TGGAAAGGGCTAGTGCAATC 57.871 50.000 0.00 0.00 41.91 2.67
3100 3153 1.340991 TGGAAAGGGCTAGTGCAATCC 60.341 52.381 0.00 0.00 41.91 3.01
3101 3154 1.340991 GGAAAGGGCTAGTGCAATCCA 60.341 52.381 0.00 0.00 41.91 3.41
3102 3155 1.745653 GAAAGGGCTAGTGCAATCCAC 59.254 52.381 0.00 0.00 45.01 4.02
3115 3168 6.918892 GTGCAATCCACATATACTGTAACA 57.081 37.500 0.00 0.00 44.06 2.41
3116 3169 6.715464 GTGCAATCCACATATACTGTAACAC 58.285 40.000 0.00 0.00 44.06 3.32
3117 3170 5.820423 TGCAATCCACATATACTGTAACACC 59.180 40.000 0.00 0.00 35.91 4.16
3118 3171 5.238650 GCAATCCACATATACTGTAACACCC 59.761 44.000 0.00 0.00 35.91 4.61
3119 3172 5.562298 ATCCACATATACTGTAACACCCC 57.438 43.478 0.00 0.00 35.91 4.95
3120 3173 3.712733 TCCACATATACTGTAACACCCCC 59.287 47.826 0.00 0.00 35.91 5.40
3121 3174 3.714798 CCACATATACTGTAACACCCCCT 59.285 47.826 0.00 0.00 35.91 4.79
3122 3175 4.202326 CCACATATACTGTAACACCCCCTC 60.202 50.000 0.00 0.00 35.91 4.30
3123 3176 4.654262 CACATATACTGTAACACCCCCTCT 59.346 45.833 0.00 0.00 35.91 3.69
3124 3177 4.900054 ACATATACTGTAACACCCCCTCTC 59.100 45.833 0.00 0.00 35.91 3.20
3125 3178 3.484953 ATACTGTAACACCCCCTCTCA 57.515 47.619 0.00 0.00 0.00 3.27
3126 3179 1.349067 ACTGTAACACCCCCTCTCAC 58.651 55.000 0.00 0.00 0.00 3.51
3127 3180 0.246635 CTGTAACACCCCCTCTCACG 59.753 60.000 0.00 0.00 0.00 4.35
3128 3181 0.470456 TGTAACACCCCCTCTCACGT 60.470 55.000 0.00 0.00 0.00 4.49
3129 3182 0.037605 GTAACACCCCCTCTCACGTG 60.038 60.000 9.94 9.94 0.00 4.49
3130 3183 0.470456 TAACACCCCCTCTCACGTGT 60.470 55.000 16.51 0.00 41.07 4.49
3131 3184 2.040009 AACACCCCCTCTCACGTGTG 62.040 60.000 16.51 13.78 39.33 3.82
3132 3185 2.200370 ACCCCCTCTCACGTGTGA 59.800 61.111 18.43 18.43 38.06 3.58
3133 3186 2.207924 ACCCCCTCTCACGTGTGAC 61.208 63.158 16.51 0.00 35.46 3.67
3143 3196 4.742274 CGTGTGACGGGAAAGACA 57.258 55.556 0.00 0.00 38.08 3.41
3144 3197 2.980562 CGTGTGACGGGAAAGACAA 58.019 52.632 0.00 0.00 38.08 3.18
3145 3198 0.859232 CGTGTGACGGGAAAGACAAG 59.141 55.000 0.00 0.00 38.08 3.16
3146 3199 1.805120 CGTGTGACGGGAAAGACAAGT 60.805 52.381 0.00 0.00 38.08 3.16
3147 3200 1.865340 GTGTGACGGGAAAGACAAGTC 59.135 52.381 0.00 0.00 0.00 3.01
3148 3201 1.483004 TGTGACGGGAAAGACAAGTCA 59.517 47.619 2.72 0.00 39.21 3.41
3149 3202 2.093394 TGTGACGGGAAAGACAAGTCAA 60.093 45.455 2.72 0.00 42.47 3.18
3150 3203 2.287103 GTGACGGGAAAGACAAGTCAAC 59.713 50.000 2.72 0.00 42.47 3.18
3151 3204 2.093394 TGACGGGAAAGACAAGTCAACA 60.093 45.455 2.72 0.00 38.66 3.33
3152 3205 2.285977 ACGGGAAAGACAAGTCAACAC 58.714 47.619 2.72 0.00 0.00 3.32
3153 3206 1.260561 CGGGAAAGACAAGTCAACACG 59.739 52.381 2.72 2.81 0.00 4.49
3154 3207 2.285977 GGGAAAGACAAGTCAACACGT 58.714 47.619 2.72 0.00 0.00 4.49
3155 3208 2.031683 GGGAAAGACAAGTCAACACGTG 59.968 50.000 15.48 15.48 37.95 4.49
3156 3209 2.538939 GGAAAGACAAGTCAACACGTGC 60.539 50.000 17.22 0.00 35.56 5.34
3157 3210 1.732941 AAGACAAGTCAACACGTGCA 58.267 45.000 17.22 0.00 35.56 4.57
3158 3211 1.732941 AGACAAGTCAACACGTGCAA 58.267 45.000 17.22 0.00 35.56 4.08
3159 3212 1.396996 AGACAAGTCAACACGTGCAAC 59.603 47.619 17.22 11.35 35.56 4.17
3160 3213 0.450184 ACAAGTCAACACGTGCAACC 59.550 50.000 17.22 1.27 35.56 3.77
3161 3214 0.588730 CAAGTCAACACGTGCAACCG 60.589 55.000 17.22 0.00 0.00 4.44
3162 3215 1.711060 AAGTCAACACGTGCAACCGG 61.711 55.000 17.22 0.00 0.00 5.28
3163 3216 2.125065 TCAACACGTGCAACCGGT 60.125 55.556 17.22 0.00 0.00 5.28
3164 3217 1.143401 TCAACACGTGCAACCGGTA 59.857 52.632 17.22 0.00 0.00 4.02
3165 3218 0.876777 TCAACACGTGCAACCGGTAG 60.877 55.000 17.22 0.00 0.00 3.18
3166 3219 0.876777 CAACACGTGCAACCGGTAGA 60.877 55.000 17.22 0.00 0.00 2.59
3167 3220 0.599204 AACACGTGCAACCGGTAGAG 60.599 55.000 17.22 1.66 0.00 2.43
3168 3221 1.287815 CACGTGCAACCGGTAGAGA 59.712 57.895 8.00 0.00 0.00 3.10
3169 3222 0.732880 CACGTGCAACCGGTAGAGAG 60.733 60.000 8.00 2.18 0.00 3.20
3170 3223 1.177256 ACGTGCAACCGGTAGAGAGT 61.177 55.000 8.00 2.93 0.00 3.24
3171 3224 0.732880 CGTGCAACCGGTAGAGAGTG 60.733 60.000 8.00 1.47 0.00 3.51
3172 3225 0.601558 GTGCAACCGGTAGAGAGTGA 59.398 55.000 8.00 0.00 0.00 3.41
3173 3226 0.601558 TGCAACCGGTAGAGAGTGAC 59.398 55.000 8.00 0.00 0.00 3.67
3174 3227 0.456312 GCAACCGGTAGAGAGTGACG 60.456 60.000 8.00 0.00 0.00 4.35
3176 3229 4.315588 CCGGTAGAGAGTGACGGT 57.684 61.111 0.00 0.00 39.70 4.83
3177 3230 3.465990 CCGGTAGAGAGTGACGGTA 57.534 57.895 0.00 0.00 39.70 4.02
3178 3231 1.012841 CCGGTAGAGAGTGACGGTAC 58.987 60.000 0.00 0.00 39.70 3.34
3191 3244 4.233408 GGTACGCGAAACTCACGT 57.767 55.556 15.93 0.00 38.74 4.49
3192 3245 3.383026 GGTACGCGAAACTCACGTA 57.617 52.632 15.93 0.00 36.49 3.57
3193 3246 1.900237 GGTACGCGAAACTCACGTAT 58.100 50.000 15.93 0.00 39.20 3.06
3194 3247 1.580704 GGTACGCGAAACTCACGTATG 59.419 52.381 15.93 0.00 39.20 2.39
3195 3248 2.508867 GTACGCGAAACTCACGTATGA 58.491 47.619 15.93 0.00 39.20 2.15
3196 3249 1.334054 ACGCGAAACTCACGTATGAC 58.666 50.000 15.93 0.00 32.99 3.06
3197 3250 1.068748 ACGCGAAACTCACGTATGACT 60.069 47.619 15.93 0.00 32.99 3.41
3198 3251 1.578023 CGCGAAACTCACGTATGACTC 59.422 52.381 0.00 0.00 0.00 3.36
3199 3252 2.592194 GCGAAACTCACGTATGACTCA 58.408 47.619 0.00 0.00 0.00 3.41
3200 3253 2.984471 GCGAAACTCACGTATGACTCAA 59.016 45.455 0.00 0.00 0.00 3.02
3201 3254 3.059570 GCGAAACTCACGTATGACTCAAG 59.940 47.826 0.00 0.00 0.00 3.02
3202 3255 4.473199 CGAAACTCACGTATGACTCAAGA 58.527 43.478 0.00 0.00 0.00 3.02
3203 3256 4.555360 CGAAACTCACGTATGACTCAAGAG 59.445 45.833 0.00 0.00 0.00 2.85
3204 3257 4.442375 AACTCACGTATGACTCAAGAGG 57.558 45.455 1.73 0.00 0.00 3.69
3205 3258 2.164624 ACTCACGTATGACTCAAGAGGC 59.835 50.000 1.73 0.00 36.85 4.70
3206 3259 1.476891 TCACGTATGACTCAAGAGGCC 59.523 52.381 0.00 0.00 34.90 5.19
3207 3260 1.478510 CACGTATGACTCAAGAGGCCT 59.521 52.381 3.86 3.86 34.90 5.19
3208 3261 2.688446 CACGTATGACTCAAGAGGCCTA 59.312 50.000 4.42 0.00 34.90 3.93
3209 3262 3.319405 CACGTATGACTCAAGAGGCCTAT 59.681 47.826 4.42 0.00 34.90 2.57
3210 3263 4.519350 CACGTATGACTCAAGAGGCCTATA 59.481 45.833 4.42 0.00 34.90 1.31
3211 3264 4.519730 ACGTATGACTCAAGAGGCCTATAC 59.480 45.833 4.42 6.61 34.90 1.47
3212 3265 4.378563 CGTATGACTCAAGAGGCCTATACG 60.379 50.000 20.18 20.18 34.90 3.06
3213 3266 3.014304 TGACTCAAGAGGCCTATACGT 57.986 47.619 4.42 0.00 34.90 3.57
3214 3267 2.688446 TGACTCAAGAGGCCTATACGTG 59.312 50.000 4.42 1.71 34.90 4.49
3215 3268 2.032620 ACTCAAGAGGCCTATACGTGG 58.967 52.381 4.42 0.00 0.00 4.94
3216 3269 2.307768 CTCAAGAGGCCTATACGTGGA 58.692 52.381 4.42 0.00 0.00 4.02
3217 3270 2.029623 TCAAGAGGCCTATACGTGGAC 58.970 52.381 4.42 0.00 0.00 4.02
3218 3271 1.754803 CAAGAGGCCTATACGTGGACA 59.245 52.381 4.42 0.00 34.31 4.02
3219 3272 1.400737 AGAGGCCTATACGTGGACAC 58.599 55.000 4.42 0.00 34.31 3.67
3220 3273 1.108776 GAGGCCTATACGTGGACACA 58.891 55.000 4.42 0.00 34.31 3.72
3221 3274 1.479323 GAGGCCTATACGTGGACACAA 59.521 52.381 4.42 0.00 34.31 3.33
3222 3275 1.903860 AGGCCTATACGTGGACACAAA 59.096 47.619 1.29 0.00 34.31 2.83
3223 3276 2.093658 AGGCCTATACGTGGACACAAAG 60.094 50.000 1.29 0.00 34.31 2.77
3224 3277 2.277084 GCCTATACGTGGACACAAAGG 58.723 52.381 0.00 4.55 0.00 3.11
3225 3278 2.901249 CCTATACGTGGACACAAAGGG 58.099 52.381 0.00 0.00 0.00 3.95
3226 3279 2.419574 CCTATACGTGGACACAAAGGGG 60.420 54.545 0.00 0.00 0.00 4.79
3227 3280 0.326927 ATACGTGGACACAAAGGGGG 59.673 55.000 0.00 0.00 0.00 5.40
3241 3294 2.747022 GGGGGCAACGGCAATTTT 59.253 55.556 0.00 0.00 43.71 1.82
3242 3295 1.072332 GGGGGCAACGGCAATTTTT 59.928 52.632 0.00 0.00 43.71 1.94
3243 3296 0.321996 GGGGGCAACGGCAATTTTTA 59.678 50.000 0.00 0.00 43.71 1.52
3244 3297 1.674519 GGGGGCAACGGCAATTTTTAG 60.675 52.381 0.00 0.00 43.71 1.85
3245 3298 1.273886 GGGGCAACGGCAATTTTTAGA 59.726 47.619 0.00 0.00 43.71 2.10
3246 3299 2.093711 GGGGCAACGGCAATTTTTAGAT 60.094 45.455 0.00 0.00 43.71 1.98
3247 3300 3.131400 GGGGCAACGGCAATTTTTAGATA 59.869 43.478 0.00 0.00 43.71 1.98
3248 3301 4.382147 GGGGCAACGGCAATTTTTAGATAA 60.382 41.667 0.00 0.00 43.71 1.75
3249 3302 5.172205 GGGCAACGGCAATTTTTAGATAAA 58.828 37.500 0.00 0.00 43.71 1.40
3250 3303 5.815222 GGGCAACGGCAATTTTTAGATAAAT 59.185 36.000 0.00 0.00 43.71 1.40
3251 3304 6.315144 GGGCAACGGCAATTTTTAGATAAATT 59.685 34.615 0.00 0.00 43.71 1.82
3252 3305 7.676104 GGGCAACGGCAATTTTTAGATAAATTG 60.676 37.037 14.34 14.34 45.64 2.32
3260 3313 8.586272 CAATTTTTAGATAAATTGCGCAAACC 57.414 30.769 28.81 13.84 44.08 3.27
3261 3314 7.897575 ATTTTTAGATAAATTGCGCAAACCA 57.102 28.000 28.81 14.89 0.00 3.67
3262 3315 6.942886 TTTTAGATAAATTGCGCAAACCAG 57.057 33.333 28.81 0.00 0.00 4.00
3263 3316 3.508744 AGATAAATTGCGCAAACCAGG 57.491 42.857 28.81 0.00 0.00 4.45
3264 3317 3.088532 AGATAAATTGCGCAAACCAGGA 58.911 40.909 28.81 9.81 0.00 3.86
3265 3318 2.715737 TAAATTGCGCAAACCAGGAC 57.284 45.000 28.81 0.00 0.00 3.85
3266 3319 1.039856 AAATTGCGCAAACCAGGACT 58.960 45.000 28.81 4.60 0.00 3.85
3267 3320 1.039856 AATTGCGCAAACCAGGACTT 58.960 45.000 28.81 11.35 0.00 3.01
3268 3321 0.314935 ATTGCGCAAACCAGGACTTG 59.685 50.000 28.81 0.00 0.00 3.16
3269 3322 0.749818 TTGCGCAAACCAGGACTTGA 60.750 50.000 22.78 0.00 0.00 3.02
3270 3323 0.749818 TGCGCAAACCAGGACTTGAA 60.750 50.000 8.16 0.00 0.00 2.69
3271 3324 0.317854 GCGCAAACCAGGACTTGAAC 60.318 55.000 0.30 0.00 0.00 3.18
3272 3325 1.308998 CGCAAACCAGGACTTGAACT 58.691 50.000 9.48 0.00 0.00 3.01
3273 3326 1.264288 CGCAAACCAGGACTTGAACTC 59.736 52.381 9.48 0.00 0.00 3.01
3274 3327 2.297701 GCAAACCAGGACTTGAACTCA 58.702 47.619 9.48 0.00 0.00 3.41
3275 3328 2.687935 GCAAACCAGGACTTGAACTCAA 59.312 45.455 9.48 0.00 0.00 3.02
3288 3341 4.527509 TGAACTCAAGACCTTAGCTCTG 57.472 45.455 0.00 0.00 0.00 3.35
3289 3342 4.152647 TGAACTCAAGACCTTAGCTCTGA 58.847 43.478 0.00 0.00 0.00 3.27
3290 3343 4.774726 TGAACTCAAGACCTTAGCTCTGAT 59.225 41.667 0.00 0.00 0.00 2.90
3291 3344 5.952347 TGAACTCAAGACCTTAGCTCTGATA 59.048 40.000 0.00 0.00 0.00 2.15
3292 3345 5.845391 ACTCAAGACCTTAGCTCTGATAC 57.155 43.478 0.00 0.00 0.00 2.24
3293 3346 4.647399 ACTCAAGACCTTAGCTCTGATACC 59.353 45.833 0.00 0.00 0.00 2.73
3294 3347 4.610333 TCAAGACCTTAGCTCTGATACCA 58.390 43.478 0.00 0.00 0.00 3.25
3295 3348 5.211973 TCAAGACCTTAGCTCTGATACCAT 58.788 41.667 0.00 0.00 0.00 3.55
3296 3349 5.069648 TCAAGACCTTAGCTCTGATACCATG 59.930 44.000 0.00 0.00 0.00 3.66
3297 3350 4.551671 AGACCTTAGCTCTGATACCATGT 58.448 43.478 0.00 0.00 0.00 3.21
3298 3351 4.965532 AGACCTTAGCTCTGATACCATGTT 59.034 41.667 0.00 0.00 0.00 2.71
3299 3352 6.136857 AGACCTTAGCTCTGATACCATGTTA 58.863 40.000 0.00 0.00 0.00 2.41
3300 3353 6.611642 AGACCTTAGCTCTGATACCATGTTAA 59.388 38.462 0.00 0.00 0.00 2.01
3301 3354 6.821388 ACCTTAGCTCTGATACCATGTTAAG 58.179 40.000 0.00 0.00 0.00 1.85
3302 3355 5.698545 CCTTAGCTCTGATACCATGTTAAGC 59.301 44.000 0.00 0.00 0.00 3.09
3303 3356 6.463614 CCTTAGCTCTGATACCATGTTAAGCT 60.464 42.308 0.00 0.66 41.41 3.74
3304 3357 5.365021 AGCTCTGATACCATGTTAAGCTT 57.635 39.130 3.48 3.48 35.42 3.74
3305 3358 5.363939 AGCTCTGATACCATGTTAAGCTTC 58.636 41.667 0.00 0.00 35.42 3.86
3306 3359 5.104776 AGCTCTGATACCATGTTAAGCTTCA 60.105 40.000 0.00 0.00 35.42 3.02
3307 3360 5.762218 GCTCTGATACCATGTTAAGCTTCAT 59.238 40.000 0.00 0.00 0.00 2.57
3308 3361 6.293298 GCTCTGATACCATGTTAAGCTTCATG 60.293 42.308 17.24 17.24 40.46 3.07
3309 3362 5.528690 TCTGATACCATGTTAAGCTTCATGC 59.471 40.000 18.30 8.69 39.74 4.06
3310 3363 5.192176 TGATACCATGTTAAGCTTCATGCA 58.808 37.500 18.30 10.61 45.94 3.96
3311 3364 3.855689 ACCATGTTAAGCTTCATGCAC 57.144 42.857 18.30 4.70 45.94 4.57
3312 3365 3.424703 ACCATGTTAAGCTTCATGCACT 58.575 40.909 18.30 4.73 45.94 4.40
3313 3366 4.588899 ACCATGTTAAGCTTCATGCACTA 58.411 39.130 18.30 0.00 45.94 2.74
3314 3367 4.637534 ACCATGTTAAGCTTCATGCACTAG 59.362 41.667 18.30 9.81 45.94 2.57
3315 3368 4.497006 CCATGTTAAGCTTCATGCACTAGC 60.497 45.833 18.30 8.13 45.94 3.42
3316 3369 3.009723 TGTTAAGCTTCATGCACTAGCC 58.990 45.455 0.00 0.11 45.94 3.93
3317 3370 3.009723 GTTAAGCTTCATGCACTAGCCA 58.990 45.455 0.00 0.00 45.94 4.75
3318 3371 2.205022 AAGCTTCATGCACTAGCCAA 57.795 45.000 11.63 0.00 45.94 4.52
3319 3372 1.457346 AGCTTCATGCACTAGCCAAC 58.543 50.000 11.63 0.00 45.94 3.77
3320 3373 0.097674 GCTTCATGCACTAGCCAACG 59.902 55.000 5.46 0.00 42.31 4.10
3321 3374 0.097674 CTTCATGCACTAGCCAACGC 59.902 55.000 0.00 0.00 41.13 4.84
3322 3375 0.605050 TTCATGCACTAGCCAACGCA 60.605 50.000 0.00 0.00 41.13 5.24
3323 3376 0.605050 TCATGCACTAGCCAACGCAA 60.605 50.000 0.00 0.00 41.13 4.85
3324 3377 0.454957 CATGCACTAGCCAACGCAAC 60.455 55.000 0.00 0.00 41.13 4.17
3325 3378 1.586154 ATGCACTAGCCAACGCAACC 61.586 55.000 0.00 0.00 41.13 3.77
3326 3379 2.258013 GCACTAGCCAACGCAACCA 61.258 57.895 0.00 0.00 37.52 3.67
3327 3380 1.791103 GCACTAGCCAACGCAACCAA 61.791 55.000 0.00 0.00 37.52 3.67
3328 3381 0.665835 CACTAGCCAACGCAACCAAA 59.334 50.000 0.00 0.00 37.52 3.28
3329 3382 1.066303 CACTAGCCAACGCAACCAAAA 59.934 47.619 0.00 0.00 37.52 2.44
3330 3383 1.336755 ACTAGCCAACGCAACCAAAAG 59.663 47.619 0.00 0.00 37.52 2.27
3331 3384 1.336755 CTAGCCAACGCAACCAAAAGT 59.663 47.619 0.00 0.00 37.52 2.66
3332 3385 0.102300 AGCCAACGCAACCAAAAGTC 59.898 50.000 0.00 0.00 37.52 3.01
3333 3386 0.874175 GCCAACGCAACCAAAAGTCC 60.874 55.000 0.00 0.00 34.03 3.85
3334 3387 0.593773 CCAACGCAACCAAAAGTCCG 60.594 55.000 0.00 0.00 0.00 4.79
3335 3388 0.378962 CAACGCAACCAAAAGTCCGA 59.621 50.000 0.00 0.00 0.00 4.55
3336 3389 1.096416 AACGCAACCAAAAGTCCGAA 58.904 45.000 0.00 0.00 0.00 4.30
3337 3390 0.661020 ACGCAACCAAAAGTCCGAAG 59.339 50.000 0.00 0.00 0.00 3.79
3338 3391 0.661020 CGCAACCAAAAGTCCGAAGT 59.339 50.000 0.00 0.00 0.00 3.01
3339 3392 1.596954 CGCAACCAAAAGTCCGAAGTG 60.597 52.381 0.00 0.00 0.00 3.16
3340 3393 1.673920 GCAACCAAAAGTCCGAAGTGA 59.326 47.619 0.00 0.00 0.00 3.41
3341 3394 2.293399 GCAACCAAAAGTCCGAAGTGAT 59.707 45.455 0.00 0.00 0.00 3.06
3342 3395 3.853307 GCAACCAAAAGTCCGAAGTGATG 60.853 47.826 0.00 0.00 0.00 3.07
3343 3396 2.504367 ACCAAAAGTCCGAAGTGATGG 58.496 47.619 0.00 0.00 0.00 3.51
3344 3397 2.105821 ACCAAAAGTCCGAAGTGATGGA 59.894 45.455 0.00 0.00 0.00 3.41
3345 3398 3.146066 CCAAAAGTCCGAAGTGATGGAA 58.854 45.455 0.00 0.00 35.67 3.53
3346 3399 3.568007 CCAAAAGTCCGAAGTGATGGAAA 59.432 43.478 0.00 0.00 35.67 3.13
3347 3400 4.320494 CCAAAAGTCCGAAGTGATGGAAAG 60.320 45.833 0.00 0.00 35.67 2.62
3348 3401 2.770164 AGTCCGAAGTGATGGAAAGG 57.230 50.000 0.00 0.00 35.67 3.11
3349 3402 1.279271 AGTCCGAAGTGATGGAAAGGG 59.721 52.381 0.00 0.00 35.67 3.95
3350 3403 0.035439 TCCGAAGTGATGGAAAGGGC 60.035 55.000 0.00 0.00 0.00 5.19
3351 3404 1.032114 CCGAAGTGATGGAAAGGGCC 61.032 60.000 0.00 0.00 0.00 5.80
3352 3405 0.322456 CGAAGTGATGGAAAGGGCCA 60.322 55.000 6.18 0.00 43.23 5.36
3353 3406 1.467920 GAAGTGATGGAAAGGGCCAG 58.532 55.000 6.18 0.00 42.15 4.85
3354 3407 0.779997 AAGTGATGGAAAGGGCCAGT 59.220 50.000 6.18 0.00 42.15 4.00
3355 3408 0.038744 AGTGATGGAAAGGGCCAGTG 59.961 55.000 6.18 0.00 42.15 3.66
3356 3409 1.304381 TGATGGAAAGGGCCAGTGC 60.304 57.895 6.18 0.00 42.15 4.40
3357 3410 1.304381 GATGGAAAGGGCCAGTGCA 60.304 57.895 6.18 4.44 42.15 4.57
3358 3411 0.899717 GATGGAAAGGGCCAGTGCAA 60.900 55.000 6.18 0.00 42.15 4.08
3359 3412 0.252375 ATGGAAAGGGCCAGTGCAAT 60.252 50.000 6.18 0.00 42.15 3.56
3360 3413 0.899717 TGGAAAGGGCCAGTGCAATC 60.900 55.000 6.18 0.00 40.13 2.67
3361 3414 1.607801 GGAAAGGGCCAGTGCAATCC 61.608 60.000 6.18 0.00 40.13 3.01
3362 3415 0.899717 GAAAGGGCCAGTGCAATCCA 60.900 55.000 6.18 0.00 40.13 3.41
3363 3416 1.187567 AAAGGGCCAGTGCAATCCAC 61.188 55.000 6.18 0.00 45.01 4.02
3376 3429 6.918892 GTGCAATCCACATATACTGTAACA 57.081 37.500 0.00 0.00 44.06 2.41
3377 3430 7.315247 GTGCAATCCACATATACTGTAACAA 57.685 36.000 0.00 0.00 44.06 2.83
3378 3431 7.930217 GTGCAATCCACATATACTGTAACAAT 58.070 34.615 0.00 0.00 44.06 2.71
3379 3432 8.405531 GTGCAATCCACATATACTGTAACAATT 58.594 33.333 0.00 0.00 44.06 2.32
3380 3433 9.620259 TGCAATCCACATATACTGTAACAATTA 57.380 29.630 0.00 0.00 35.91 1.40
3394 3447 6.539173 TGTAACAATTACCACCTGAACATCT 58.461 36.000 0.00 0.00 35.25 2.90
3580 3633 8.979574 GTCTCCATTTATTTCTATCTGGTTACG 58.020 37.037 0.00 0.00 0.00 3.18
3680 3733 5.871396 ATTGTACATAGTGGGAAGACGAT 57.129 39.130 0.00 0.00 0.00 3.73
3685 3738 3.706594 ACATAGTGGGAAGACGATCATGT 59.293 43.478 0.00 0.00 0.00 3.21
3707 3760 6.052360 TGTTGCAAAGAATCACACAGTACTA 58.948 36.000 0.00 0.00 0.00 1.82
3709 3762 5.606505 TGCAAAGAATCACACAGTACTACA 58.393 37.500 0.00 0.00 0.00 2.74
3965 7320 3.700539 CCACTTGCATCATTTATGGTGGA 59.299 43.478 5.22 0.00 43.10 4.02
4158 7513 9.668497 AGAAACACCTTATAGAATGGAGTAAAC 57.332 33.333 0.00 0.00 0.00 2.01
4218 7573 3.700038 AGATTTCATCCTACCTCGTTCGT 59.300 43.478 0.00 0.00 0.00 3.85
4337 7692 3.644966 TGGGTTCTCTCTCTCTCTCTC 57.355 52.381 0.00 0.00 0.00 3.20
4338 7693 3.189606 TGGGTTCTCTCTCTCTCTCTCT 58.810 50.000 0.00 0.00 0.00 3.10
4603 7958 5.394663 CCGTGAGACCACAAGAAAGATCTAT 60.395 44.000 0.00 0.00 43.34 1.98
4906 8261 6.292923 TGTTGTTGGTGCATAAGTAGTAGTT 58.707 36.000 0.00 0.00 0.00 2.24
4950 8305 6.459066 TCTGAAGTGAATCAGTTAAGTCTGG 58.541 40.000 13.43 0.00 45.65 3.86
5219 8584 6.608922 AGCCCTAGAATTATTTCTTGCTGAT 58.391 36.000 5.26 0.00 42.29 2.90
5284 8649 7.122799 ACCAGGGTAAGAAGATTATTTTCTTGC 59.877 37.037 17.50 16.01 42.95 4.01
5411 8776 9.031360 GTTAAAATCAATCTAGATGCGTCACTA 57.969 33.333 5.86 0.00 0.00 2.74
5465 8830 2.224042 GGTAGCGTGTGATGATCATGGA 60.224 50.000 14.30 0.00 0.00 3.41
5677 9043 3.461061 CGATCATTGTGAGTGTAGGCAT 58.539 45.455 0.00 0.00 0.00 4.40
5678 9044 4.501400 CCGATCATTGTGAGTGTAGGCATA 60.501 45.833 0.00 0.00 0.00 3.14
5680 9046 5.698089 CGATCATTGTGAGTGTAGGCATATT 59.302 40.000 0.00 0.00 0.00 1.28
5682 9048 5.125356 TCATTGTGAGTGTAGGCATATTGG 58.875 41.667 0.00 0.00 0.00 3.16
5683 9049 3.558931 TGTGAGTGTAGGCATATTGGG 57.441 47.619 0.00 0.00 0.00 4.12
5684 9050 2.843730 TGTGAGTGTAGGCATATTGGGT 59.156 45.455 0.00 0.00 0.00 4.51
5739 9137 6.155393 AGAGGCTAAACATGCTTCTAGTAGTT 59.845 38.462 0.00 0.00 43.46 2.24
5779 9177 6.718294 GGGATTCTTACTTCCCTGACTTTAA 58.282 40.000 0.63 0.00 46.91 1.52
5830 9228 5.677319 ATCGGTTGAGGAATAAAGTCTGA 57.323 39.130 0.00 0.00 0.00 3.27
5884 9284 3.430374 CCCCATTAGTGAGGTAACAGTCG 60.430 52.174 0.00 0.00 41.41 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.895889 TGGTCAGTCCGATCATCTCTAATT 59.104 41.667 0.00 0.00 39.52 1.40
118 119 4.038042 CAGCTCGGAATCCATCTAGTGTTA 59.962 45.833 0.00 0.00 0.00 2.41
128 129 1.612146 TCACCCAGCTCGGAATCCA 60.612 57.895 3.62 0.00 36.56 3.41
134 135 0.249120 TATGTTGTCACCCAGCTCGG 59.751 55.000 0.00 0.00 0.00 4.63
183 184 0.620556 TCATGAGGCCCTCAACTTCC 59.379 55.000 19.17 0.00 44.04 3.46
363 379 1.974236 CCTCCACTCATACCCATCCTC 59.026 57.143 0.00 0.00 0.00 3.71
415 433 5.119931 TGTTGTTTTTAGCTTCATCGCAT 57.880 34.783 0.00 0.00 0.00 4.73
431 450 3.380142 GCACAATGTCGGAAATGTTGTT 58.620 40.909 0.00 0.00 31.19 2.83
442 461 3.729526 AGAAATTCTCGCACAATGTCG 57.270 42.857 0.00 0.00 0.00 4.35
657 677 7.094933 ACCACGGACTTTTGTAATATCTTGTTC 60.095 37.037 0.00 0.00 0.00 3.18
663 683 6.699063 CGTTACCACGGACTTTTGTAATATC 58.301 40.000 0.00 0.00 43.16 1.63
698 718 8.847196 AGCGAATAACTGATACATCACTAGTAA 58.153 33.333 0.00 0.00 32.50 2.24
895 915 9.716531 ATATTTCATCAGTGTGGACTACATATG 57.283 33.333 0.00 0.00 42.24 1.78
933 953 9.461734 AACCTACTCCCTATGTTCCTAAATATT 57.538 33.333 0.00 0.00 0.00 1.28
946 966 6.903340 AAAACCATGTAACCTACTCCCTAT 57.097 37.500 0.00 0.00 0.00 2.57
947 967 6.272792 TGAAAAACCATGTAACCTACTCCCTA 59.727 38.462 0.00 0.00 0.00 3.53
949 969 5.182570 GTGAAAAACCATGTAACCTACTCCC 59.817 44.000 0.00 0.00 0.00 4.30
1148 1169 0.817229 GTAGCGTACGGAGGCTAGGT 60.817 60.000 21.91 0.00 46.76 3.08
1250 1271 3.461773 CAGAGACGGGGCGGACAT 61.462 66.667 0.00 0.00 0.00 3.06
1379 1415 7.808856 GCGTTCTAACAATAAACCAATAAACCA 59.191 33.333 0.00 0.00 0.00 3.67
1380 1416 8.024865 AGCGTTCTAACAATAAACCAATAAACC 58.975 33.333 0.00 0.00 0.00 3.27
1381 1417 8.959734 AGCGTTCTAACAATAAACCAATAAAC 57.040 30.769 0.00 0.00 0.00 2.01
1382 1418 9.968870 AAAGCGTTCTAACAATAAACCAATAAA 57.031 25.926 0.00 0.00 0.00 1.40
1383 1419 9.615295 GAAAGCGTTCTAACAATAAACCAATAA 57.385 29.630 5.03 0.00 0.00 1.40
1384 1420 9.005777 AGAAAGCGTTCTAACAATAAACCAATA 57.994 29.630 13.53 0.00 42.53 1.90
1385 1421 7.807907 CAGAAAGCGTTCTAACAATAAACCAAT 59.192 33.333 14.72 0.00 42.45 3.16
1386 1422 7.136119 CAGAAAGCGTTCTAACAATAAACCAA 58.864 34.615 14.72 0.00 42.45 3.67
1390 1426 8.399425 TGAAACAGAAAGCGTTCTAACAATAAA 58.601 29.630 14.72 0.00 42.45 1.40
1504 1540 0.038159 AACTACGAGACTGCAGCCAC 60.038 55.000 15.27 0.00 0.00 5.01
1674 1713 7.653311 TCATTATGAGACATGTTAACTGATCGG 59.347 37.037 7.22 0.00 0.00 4.18
1675 1714 8.579682 TCATTATGAGACATGTTAACTGATCG 57.420 34.615 7.22 0.00 0.00 3.69
1681 1720 9.013490 GCACAAATCATTATGAGACATGTTAAC 57.987 33.333 0.00 0.00 0.00 2.01
1682 1721 8.190122 GGCACAAATCATTATGAGACATGTTAA 58.810 33.333 0.00 0.00 0.00 2.01
1683 1722 7.557358 AGGCACAAATCATTATGAGACATGTTA 59.443 33.333 0.00 0.00 0.00 2.41
1684 1723 6.379133 AGGCACAAATCATTATGAGACATGTT 59.621 34.615 0.00 0.00 0.00 2.71
1685 1724 5.889853 AGGCACAAATCATTATGAGACATGT 59.110 36.000 0.00 0.00 0.00 3.21
1811 1862 6.017192 CCATATCGTTTACATTCATCTGGCAA 60.017 38.462 0.00 0.00 0.00 4.52
2814 2865 2.584492 AAAGCAGAAAACAGGTGTGC 57.416 45.000 0.00 0.00 0.00 4.57
2836 2887 9.017509 ACTTCATTTAGAAAGATTCTGATTGCA 57.982 29.630 2.94 0.00 40.94 4.08
2909 2962 0.988678 AGCCCCTAACCACATCTCCC 60.989 60.000 0.00 0.00 0.00 4.30
2910 2963 0.181350 CAGCCCCTAACCACATCTCC 59.819 60.000 0.00 0.00 0.00 3.71
3033 3086 5.059161 TGGCTAGTGCATGAAGCTTAATAG 58.941 41.667 14.92 0.00 45.94 1.73
3034 3087 5.034852 TGGCTAGTGCATGAAGCTTAATA 57.965 39.130 14.92 0.00 45.94 0.98
3035 3088 3.889815 TGGCTAGTGCATGAAGCTTAAT 58.110 40.909 14.92 0.00 45.94 1.40
3036 3089 3.348647 TGGCTAGTGCATGAAGCTTAA 57.651 42.857 14.92 0.00 45.94 1.85
3037 3090 3.009723 GTTGGCTAGTGCATGAAGCTTA 58.990 45.455 14.92 5.14 45.94 3.09
3038 3091 1.815003 GTTGGCTAGTGCATGAAGCTT 59.185 47.619 14.92 0.00 45.94 3.74
3039 3092 1.457346 GTTGGCTAGTGCATGAAGCT 58.543 50.000 14.92 0.00 45.94 3.74
3040 3093 0.097674 CGTTGGCTAGTGCATGAAGC 59.902 55.000 0.00 8.84 45.96 3.86
3041 3094 0.097674 GCGTTGGCTAGTGCATGAAG 59.902 55.000 0.00 0.00 41.91 3.02
3042 3095 0.605050 TGCGTTGGCTAGTGCATGAA 60.605 50.000 0.00 0.00 41.91 2.57
3043 3096 0.605050 TTGCGTTGGCTAGTGCATGA 60.605 50.000 0.00 0.00 41.91 3.07
3044 3097 0.454957 GTTGCGTTGGCTAGTGCATG 60.455 55.000 0.00 0.00 41.91 4.06
3045 3098 1.586154 GGTTGCGTTGGCTAGTGCAT 61.586 55.000 0.00 0.00 41.91 3.96
3046 3099 2.258013 GGTTGCGTTGGCTAGTGCA 61.258 57.895 0.00 0.00 41.91 4.57
3047 3100 1.791103 TTGGTTGCGTTGGCTAGTGC 61.791 55.000 0.00 0.00 40.82 4.40
3048 3101 0.665835 TTTGGTTGCGTTGGCTAGTG 59.334 50.000 0.00 0.00 40.82 2.74
3049 3102 1.336755 CTTTTGGTTGCGTTGGCTAGT 59.663 47.619 0.00 0.00 40.82 2.57
3050 3103 1.336755 ACTTTTGGTTGCGTTGGCTAG 59.663 47.619 0.00 0.00 40.82 3.42
3051 3104 1.335496 GACTTTTGGTTGCGTTGGCTA 59.665 47.619 0.00 0.00 40.82 3.93
3052 3105 0.102300 GACTTTTGGTTGCGTTGGCT 59.898 50.000 0.00 0.00 40.82 4.75
3053 3106 0.102300 AGACTTTTGGTTGCGTTGGC 59.898 50.000 0.00 0.00 40.52 4.52
3054 3107 1.403679 TCAGACTTTTGGTTGCGTTGG 59.596 47.619 0.00 0.00 0.00 3.77
3055 3108 2.842208 TCAGACTTTTGGTTGCGTTG 57.158 45.000 0.00 0.00 0.00 4.10
3056 3109 2.752903 AGTTCAGACTTTTGGTTGCGTT 59.247 40.909 0.00 0.00 29.87 4.84
3057 3110 2.097466 CAGTTCAGACTTTTGGTTGCGT 59.903 45.455 0.00 0.00 32.54 5.24
3058 3111 2.354510 TCAGTTCAGACTTTTGGTTGCG 59.645 45.455 0.00 0.00 32.54 4.85
3059 3112 4.293415 CATCAGTTCAGACTTTTGGTTGC 58.707 43.478 0.00 0.00 32.54 4.17
3060 3113 4.580167 TCCATCAGTTCAGACTTTTGGTTG 59.420 41.667 0.00 0.00 36.97 3.77
3061 3114 4.792068 TCCATCAGTTCAGACTTTTGGTT 58.208 39.130 0.00 0.00 36.97 3.67
3062 3115 4.437682 TCCATCAGTTCAGACTTTTGGT 57.562 40.909 0.00 0.00 36.97 3.67
3063 3116 5.278660 CCTTTCCATCAGTTCAGACTTTTGG 60.279 44.000 0.00 0.00 36.98 3.28
3064 3117 5.278660 CCCTTTCCATCAGTTCAGACTTTTG 60.279 44.000 0.00 0.00 32.54 2.44
3065 3118 4.829492 CCCTTTCCATCAGTTCAGACTTTT 59.171 41.667 0.00 0.00 32.54 2.27
3066 3119 4.401925 CCCTTTCCATCAGTTCAGACTTT 58.598 43.478 0.00 0.00 32.54 2.66
3067 3120 3.812167 GCCCTTTCCATCAGTTCAGACTT 60.812 47.826 0.00 0.00 32.54 3.01
3068 3121 2.290577 GCCCTTTCCATCAGTTCAGACT 60.291 50.000 0.00 0.00 36.25 3.24
3069 3122 2.087646 GCCCTTTCCATCAGTTCAGAC 58.912 52.381 0.00 0.00 0.00 3.51
3070 3123 1.988107 AGCCCTTTCCATCAGTTCAGA 59.012 47.619 0.00 0.00 0.00 3.27
3071 3124 2.503895 AGCCCTTTCCATCAGTTCAG 57.496 50.000 0.00 0.00 0.00 3.02
3072 3125 2.912956 ACTAGCCCTTTCCATCAGTTCA 59.087 45.455 0.00 0.00 0.00 3.18
3073 3126 3.274288 CACTAGCCCTTTCCATCAGTTC 58.726 50.000 0.00 0.00 0.00 3.01
3074 3127 2.619074 GCACTAGCCCTTTCCATCAGTT 60.619 50.000 0.00 0.00 33.58 3.16
3075 3128 1.065126 GCACTAGCCCTTTCCATCAGT 60.065 52.381 0.00 0.00 33.58 3.41
3076 3129 1.065199 TGCACTAGCCCTTTCCATCAG 60.065 52.381 0.00 0.00 41.13 2.90
3077 3130 0.991146 TGCACTAGCCCTTTCCATCA 59.009 50.000 0.00 0.00 41.13 3.07
3078 3131 2.128771 TTGCACTAGCCCTTTCCATC 57.871 50.000 0.00 0.00 41.13 3.51
3079 3132 2.659428 GATTGCACTAGCCCTTTCCAT 58.341 47.619 0.00 0.00 41.13 3.41
3080 3133 1.340991 GGATTGCACTAGCCCTTTCCA 60.341 52.381 0.00 0.00 41.13 3.53
3081 3134 1.340991 TGGATTGCACTAGCCCTTTCC 60.341 52.381 0.00 0.00 41.13 3.13
3082 3135 1.745653 GTGGATTGCACTAGCCCTTTC 59.254 52.381 0.45 0.00 41.13 2.62
3083 3136 1.075374 TGTGGATTGCACTAGCCCTTT 59.925 47.619 9.80 0.00 41.13 3.11
3084 3137 0.698238 TGTGGATTGCACTAGCCCTT 59.302 50.000 9.80 0.00 41.13 3.95
3085 3138 0.921896 ATGTGGATTGCACTAGCCCT 59.078 50.000 9.80 0.00 41.13 5.19
3086 3139 2.638480 TATGTGGATTGCACTAGCCC 57.362 50.000 9.80 0.00 41.13 5.19
3087 3140 4.692625 CAGTATATGTGGATTGCACTAGCC 59.307 45.833 9.80 0.00 41.13 3.93
3088 3141 5.300752 ACAGTATATGTGGATTGCACTAGC 58.699 41.667 9.80 0.00 41.91 3.42
3089 3142 7.926018 TGTTACAGTATATGTGGATTGCACTAG 59.074 37.037 9.80 0.00 43.80 2.57
3090 3143 7.709182 GTGTTACAGTATATGTGGATTGCACTA 59.291 37.037 9.80 0.72 43.80 2.74
3091 3144 6.538742 GTGTTACAGTATATGTGGATTGCACT 59.461 38.462 9.80 0.00 43.80 4.40
3092 3145 6.238374 GGTGTTACAGTATATGTGGATTGCAC 60.238 42.308 0.72 0.72 43.80 4.57
3093 3146 5.820423 GGTGTTACAGTATATGTGGATTGCA 59.180 40.000 0.00 0.00 43.80 4.08
3094 3147 5.238650 GGGTGTTACAGTATATGTGGATTGC 59.761 44.000 0.00 0.00 43.80 3.56
3095 3148 5.763204 GGGGTGTTACAGTATATGTGGATTG 59.237 44.000 0.00 0.00 43.80 2.67
3096 3149 5.163131 GGGGGTGTTACAGTATATGTGGATT 60.163 44.000 0.00 0.00 43.80 3.01
3097 3150 4.349930 GGGGGTGTTACAGTATATGTGGAT 59.650 45.833 0.00 0.00 43.80 3.41
3098 3151 3.712733 GGGGGTGTTACAGTATATGTGGA 59.287 47.826 0.00 0.00 43.80 4.02
3099 3152 3.714798 AGGGGGTGTTACAGTATATGTGG 59.285 47.826 0.00 0.00 43.80 4.17
3100 3153 4.654262 AGAGGGGGTGTTACAGTATATGTG 59.346 45.833 0.00 0.00 43.80 3.21
3101 3154 4.892198 AGAGGGGGTGTTACAGTATATGT 58.108 43.478 0.00 0.00 46.45 2.29
3102 3155 4.899457 TGAGAGGGGGTGTTACAGTATATG 59.101 45.833 0.00 0.00 0.00 1.78
3103 3156 4.900054 GTGAGAGGGGGTGTTACAGTATAT 59.100 45.833 0.00 0.00 0.00 0.86
3104 3157 4.284178 GTGAGAGGGGGTGTTACAGTATA 58.716 47.826 0.00 0.00 0.00 1.47
3105 3158 3.105283 GTGAGAGGGGGTGTTACAGTAT 58.895 50.000 0.00 0.00 0.00 2.12
3106 3159 2.532843 GTGAGAGGGGGTGTTACAGTA 58.467 52.381 0.00 0.00 0.00 2.74
3107 3160 1.349067 GTGAGAGGGGGTGTTACAGT 58.651 55.000 0.00 0.00 0.00 3.55
3108 3161 0.246635 CGTGAGAGGGGGTGTTACAG 59.753 60.000 0.00 0.00 0.00 2.74
3109 3162 0.470456 ACGTGAGAGGGGGTGTTACA 60.470 55.000 0.00 0.00 0.00 2.41
3110 3163 0.037605 CACGTGAGAGGGGGTGTTAC 60.038 60.000 10.90 0.00 0.00 2.50
3111 3164 0.470456 ACACGTGAGAGGGGGTGTTA 60.470 55.000 25.01 0.00 40.46 2.41
3112 3165 1.764854 ACACGTGAGAGGGGGTGTT 60.765 57.895 25.01 0.00 40.46 3.32
3113 3166 2.122989 ACACGTGAGAGGGGGTGT 60.123 61.111 25.01 0.00 38.69 4.16
3114 3167 2.207229 TCACACGTGAGAGGGGGTG 61.207 63.158 25.01 7.41 34.14 4.61
3115 3168 2.200370 TCACACGTGAGAGGGGGT 59.800 61.111 25.01 0.00 34.14 4.95
3116 3169 2.657237 GTCACACGTGAGAGGGGG 59.343 66.667 25.01 0.00 40.75 5.40
3117 3170 2.258591 CGTCACACGTGAGAGGGG 59.741 66.667 25.01 8.32 40.75 4.79
3118 3171 2.258591 CCGTCACACGTGAGAGGG 59.741 66.667 30.75 30.75 40.58 4.30
3119 3172 1.802337 TTCCCGTCACACGTGAGAGG 61.802 60.000 25.01 23.93 40.58 3.69
3120 3173 0.031585 TTTCCCGTCACACGTGAGAG 59.968 55.000 25.01 13.12 40.58 3.20
3121 3174 0.031585 CTTTCCCGTCACACGTGAGA 59.968 55.000 25.01 18.14 40.58 3.27
3122 3175 0.031585 TCTTTCCCGTCACACGTGAG 59.968 55.000 25.01 15.63 40.58 3.51
3123 3176 0.249155 GTCTTTCCCGTCACACGTGA 60.249 55.000 25.01 0.00 40.58 4.35
3124 3177 0.528901 TGTCTTTCCCGTCACACGTG 60.529 55.000 15.48 15.48 40.58 4.49
3125 3178 0.176219 TTGTCTTTCCCGTCACACGT 59.824 50.000 0.00 0.00 40.58 4.49
3126 3179 0.859232 CTTGTCTTTCCCGTCACACG 59.141 55.000 0.00 0.00 42.11 4.49
3127 3180 1.865340 GACTTGTCTTTCCCGTCACAC 59.135 52.381 0.00 0.00 0.00 3.82
3128 3181 1.483004 TGACTTGTCTTTCCCGTCACA 59.517 47.619 2.35 0.00 30.41 3.58
3129 3182 2.234300 TGACTTGTCTTTCCCGTCAC 57.766 50.000 2.35 0.00 30.41 3.67
3130 3183 2.093394 TGTTGACTTGTCTTTCCCGTCA 60.093 45.455 2.35 0.00 33.25 4.35
3131 3184 2.287103 GTGTTGACTTGTCTTTCCCGTC 59.713 50.000 2.35 0.00 0.00 4.79
3132 3185 2.285977 GTGTTGACTTGTCTTTCCCGT 58.714 47.619 2.35 0.00 0.00 5.28
3133 3186 1.260561 CGTGTTGACTTGTCTTTCCCG 59.739 52.381 2.35 0.00 0.00 5.14
3134 3187 2.031683 CACGTGTTGACTTGTCTTTCCC 59.968 50.000 7.58 0.00 0.00 3.97
3135 3188 2.538939 GCACGTGTTGACTTGTCTTTCC 60.539 50.000 18.38 0.00 0.00 3.13
3136 3189 2.095213 TGCACGTGTTGACTTGTCTTTC 59.905 45.455 18.38 0.00 0.00 2.62
3137 3190 2.080693 TGCACGTGTTGACTTGTCTTT 58.919 42.857 18.38 0.00 0.00 2.52
3138 3191 1.732941 TGCACGTGTTGACTTGTCTT 58.267 45.000 18.38 0.00 0.00 3.01
3139 3192 1.396996 GTTGCACGTGTTGACTTGTCT 59.603 47.619 18.38 0.00 0.00 3.41
3140 3193 1.531058 GGTTGCACGTGTTGACTTGTC 60.531 52.381 18.38 0.00 0.00 3.18
3141 3194 0.450184 GGTTGCACGTGTTGACTTGT 59.550 50.000 18.38 0.00 0.00 3.16
3142 3195 0.588730 CGGTTGCACGTGTTGACTTG 60.589 55.000 18.38 6.88 0.00 3.16
3143 3196 1.711060 CCGGTTGCACGTGTTGACTT 61.711 55.000 18.38 0.00 0.00 3.01
3144 3197 2.177580 CCGGTTGCACGTGTTGACT 61.178 57.895 18.38 0.00 0.00 3.41
3145 3198 1.152989 TACCGGTTGCACGTGTTGAC 61.153 55.000 15.04 12.75 0.00 3.18
3146 3199 0.876777 CTACCGGTTGCACGTGTTGA 60.877 55.000 15.04 0.13 0.00 3.18
3147 3200 0.876777 TCTACCGGTTGCACGTGTTG 60.877 55.000 15.04 2.70 0.00 3.33
3148 3201 0.599204 CTCTACCGGTTGCACGTGTT 60.599 55.000 15.04 0.00 0.00 3.32
3149 3202 1.006571 CTCTACCGGTTGCACGTGT 60.007 57.895 15.04 0.00 0.00 4.49
3150 3203 0.732880 CTCTCTACCGGTTGCACGTG 60.733 60.000 15.04 12.28 0.00 4.49
3151 3204 1.177256 ACTCTCTACCGGTTGCACGT 61.177 55.000 15.04 5.24 0.00 4.49
3152 3205 0.732880 CACTCTCTACCGGTTGCACG 60.733 60.000 15.04 4.55 0.00 5.34
3153 3206 0.601558 TCACTCTCTACCGGTTGCAC 59.398 55.000 15.04 0.00 0.00 4.57
3154 3207 0.601558 GTCACTCTCTACCGGTTGCA 59.398 55.000 15.04 0.00 0.00 4.08
3155 3208 0.456312 CGTCACTCTCTACCGGTTGC 60.456 60.000 15.04 0.00 0.00 4.17
3156 3209 0.170561 CCGTCACTCTCTACCGGTTG 59.829 60.000 15.04 12.18 34.10 3.77
3157 3210 2.564471 CCGTCACTCTCTACCGGTT 58.436 57.895 15.04 0.00 34.10 4.44
3158 3211 1.377994 ACCGTCACTCTCTACCGGT 59.622 57.895 13.98 13.98 46.31 5.28
3159 3212 1.012841 GTACCGTCACTCTCTACCGG 58.987 60.000 0.00 0.00 44.06 5.28
3160 3213 0.649475 CGTACCGTCACTCTCTACCG 59.351 60.000 0.00 0.00 0.00 4.02
3161 3214 0.376502 GCGTACCGTCACTCTCTACC 59.623 60.000 0.00 0.00 0.00 3.18
3162 3215 0.026027 CGCGTACCGTCACTCTCTAC 59.974 60.000 0.00 0.00 0.00 2.59
3163 3216 0.108662 TCGCGTACCGTCACTCTCTA 60.109 55.000 5.77 0.00 38.35 2.43
3164 3217 0.952497 TTCGCGTACCGTCACTCTCT 60.952 55.000 5.77 0.00 38.35 3.10
3165 3218 0.110056 TTTCGCGTACCGTCACTCTC 60.110 55.000 5.77 0.00 38.35 3.20
3166 3219 0.386478 GTTTCGCGTACCGTCACTCT 60.386 55.000 5.77 0.00 38.35 3.24
3167 3220 0.386478 AGTTTCGCGTACCGTCACTC 60.386 55.000 5.77 0.00 38.35 3.51
3168 3221 0.386478 GAGTTTCGCGTACCGTCACT 60.386 55.000 5.77 0.00 38.35 3.41
3169 3222 0.661187 TGAGTTTCGCGTACCGTCAC 60.661 55.000 5.77 0.00 38.35 3.67
3170 3223 0.661187 GTGAGTTTCGCGTACCGTCA 60.661 55.000 5.77 4.17 38.35 4.35
3171 3224 1.659262 CGTGAGTTTCGCGTACCGTC 61.659 60.000 5.77 1.55 44.47 4.79
3172 3225 1.727022 CGTGAGTTTCGCGTACCGT 60.727 57.895 5.77 0.00 44.47 4.83
3173 3226 3.058351 CGTGAGTTTCGCGTACCG 58.942 61.111 5.77 1.73 44.47 4.02
3179 3232 2.592194 TGAGTCATACGTGAGTTTCGC 58.408 47.619 0.00 0.00 46.40 4.70
3180 3233 4.473199 TCTTGAGTCATACGTGAGTTTCG 58.527 43.478 0.00 0.00 46.40 3.46
3181 3234 4.859798 CCTCTTGAGTCATACGTGAGTTTC 59.140 45.833 0.00 0.00 46.40 2.78
3182 3235 4.810790 CCTCTTGAGTCATACGTGAGTTT 58.189 43.478 0.00 0.00 46.40 2.66
3183 3236 3.367498 GCCTCTTGAGTCATACGTGAGTT 60.367 47.826 0.00 0.00 46.40 3.01
3185 3238 2.480416 GGCCTCTTGAGTCATACGTGAG 60.480 54.545 0.00 0.00 34.36 3.51
3186 3239 1.476891 GGCCTCTTGAGTCATACGTGA 59.523 52.381 0.00 0.00 0.00 4.35
3187 3240 1.478510 AGGCCTCTTGAGTCATACGTG 59.521 52.381 0.00 0.00 0.00 4.49
3188 3241 1.853963 AGGCCTCTTGAGTCATACGT 58.146 50.000 0.00 0.00 0.00 3.57
3189 3242 4.378563 CGTATAGGCCTCTTGAGTCATACG 60.379 50.000 20.18 20.18 35.57 3.06
3190 3243 4.519730 ACGTATAGGCCTCTTGAGTCATAC 59.480 45.833 9.68 8.32 0.00 2.39
3191 3244 4.519350 CACGTATAGGCCTCTTGAGTCATA 59.481 45.833 9.68 0.00 0.00 2.15
3192 3245 3.319405 CACGTATAGGCCTCTTGAGTCAT 59.681 47.826 9.68 0.00 0.00 3.06
3193 3246 2.688446 CACGTATAGGCCTCTTGAGTCA 59.312 50.000 9.68 0.00 0.00 3.41
3194 3247 2.034812 CCACGTATAGGCCTCTTGAGTC 59.965 54.545 9.68 0.00 0.00 3.36
3195 3248 2.032620 CCACGTATAGGCCTCTTGAGT 58.967 52.381 9.68 1.02 0.00 3.41
3196 3249 2.034812 GTCCACGTATAGGCCTCTTGAG 59.965 54.545 9.68 0.27 0.00 3.02
3197 3250 2.029623 GTCCACGTATAGGCCTCTTGA 58.970 52.381 9.68 0.00 0.00 3.02
3198 3251 1.754803 TGTCCACGTATAGGCCTCTTG 59.245 52.381 9.68 0.00 0.00 3.02
3199 3252 1.755380 GTGTCCACGTATAGGCCTCTT 59.245 52.381 9.68 0.00 0.00 2.85
3200 3253 1.341679 TGTGTCCACGTATAGGCCTCT 60.342 52.381 9.68 0.46 0.00 3.69
3201 3254 1.108776 TGTGTCCACGTATAGGCCTC 58.891 55.000 9.68 0.00 0.00 4.70
3202 3255 1.563924 TTGTGTCCACGTATAGGCCT 58.436 50.000 11.78 11.78 0.00 5.19
3203 3256 2.277084 CTTTGTGTCCACGTATAGGCC 58.723 52.381 0.00 0.00 0.00 5.19
3204 3257 2.277084 CCTTTGTGTCCACGTATAGGC 58.723 52.381 0.00 0.00 0.00 3.93
3205 3258 2.419574 CCCCTTTGTGTCCACGTATAGG 60.420 54.545 0.00 0.00 0.00 2.57
3206 3259 2.419574 CCCCCTTTGTGTCCACGTATAG 60.420 54.545 0.00 0.00 0.00 1.31
3207 3260 1.555992 CCCCCTTTGTGTCCACGTATA 59.444 52.381 0.00 0.00 0.00 1.47
3208 3261 0.326927 CCCCCTTTGTGTCCACGTAT 59.673 55.000 0.00 0.00 0.00 3.06
3209 3262 1.756024 CCCCCTTTGTGTCCACGTA 59.244 57.895 0.00 0.00 0.00 3.57
3210 3263 2.513895 CCCCCTTTGTGTCCACGT 59.486 61.111 0.00 0.00 0.00 4.49
3224 3277 0.321996 TAAAAATTGCCGTTGCCCCC 59.678 50.000 0.00 0.00 36.33 5.40
3225 3278 1.273886 TCTAAAAATTGCCGTTGCCCC 59.726 47.619 0.00 0.00 36.33 5.80
3226 3279 2.734276 TCTAAAAATTGCCGTTGCCC 57.266 45.000 0.00 0.00 36.33 5.36
3227 3280 6.902224 ATTTATCTAAAAATTGCCGTTGCC 57.098 33.333 0.00 0.00 36.33 4.52
3236 3289 8.316640 TGGTTTGCGCAATTTATCTAAAAATT 57.683 26.923 25.64 0.00 39.14 1.82
3237 3290 7.064490 CCTGGTTTGCGCAATTTATCTAAAAAT 59.936 33.333 25.64 0.00 0.00 1.82
3238 3291 6.367422 CCTGGTTTGCGCAATTTATCTAAAAA 59.633 34.615 25.64 0.36 0.00 1.94
3239 3292 5.866633 CCTGGTTTGCGCAATTTATCTAAAA 59.133 36.000 25.64 0.97 0.00 1.52
3240 3293 5.184096 TCCTGGTTTGCGCAATTTATCTAAA 59.816 36.000 25.64 1.84 0.00 1.85
3241 3294 4.702612 TCCTGGTTTGCGCAATTTATCTAA 59.297 37.500 25.64 2.70 0.00 2.10
3242 3295 4.095782 GTCCTGGTTTGCGCAATTTATCTA 59.904 41.667 25.64 3.58 0.00 1.98
3243 3296 3.088532 TCCTGGTTTGCGCAATTTATCT 58.911 40.909 25.64 0.00 0.00 1.98
3244 3297 3.119495 AGTCCTGGTTTGCGCAATTTATC 60.119 43.478 25.64 10.38 0.00 1.75
3245 3298 2.825532 AGTCCTGGTTTGCGCAATTTAT 59.174 40.909 25.64 2.07 0.00 1.40
3246 3299 2.235016 AGTCCTGGTTTGCGCAATTTA 58.765 42.857 25.64 6.23 0.00 1.40
3247 3300 1.039856 AGTCCTGGTTTGCGCAATTT 58.960 45.000 25.64 0.69 0.00 1.82
3248 3301 1.039856 AAGTCCTGGTTTGCGCAATT 58.960 45.000 25.64 9.71 0.00 2.32
3249 3302 0.314935 CAAGTCCTGGTTTGCGCAAT 59.685 50.000 25.64 2.70 0.00 3.56
3250 3303 0.749818 TCAAGTCCTGGTTTGCGCAA 60.750 50.000 21.02 21.02 0.00 4.85
3251 3304 0.749818 TTCAAGTCCTGGTTTGCGCA 60.750 50.000 5.66 5.66 0.00 6.09
3252 3305 0.317854 GTTCAAGTCCTGGTTTGCGC 60.318 55.000 0.00 0.00 0.00 6.09
3253 3306 1.264288 GAGTTCAAGTCCTGGTTTGCG 59.736 52.381 8.25 0.00 0.00 4.85
3254 3307 2.297701 TGAGTTCAAGTCCTGGTTTGC 58.702 47.619 8.25 0.00 0.00 3.68
3255 3308 4.558538 CTTGAGTTCAAGTCCTGGTTTG 57.441 45.455 12.61 0.53 46.11 2.93
3266 3319 4.588951 TCAGAGCTAAGGTCTTGAGTTCAA 59.411 41.667 0.00 0.00 38.40 2.69
3267 3320 4.152647 TCAGAGCTAAGGTCTTGAGTTCA 58.847 43.478 0.00 0.00 38.40 3.18
3268 3321 4.792521 TCAGAGCTAAGGTCTTGAGTTC 57.207 45.455 0.00 0.00 38.40 3.01
3269 3322 5.128008 GGTATCAGAGCTAAGGTCTTGAGTT 59.872 44.000 0.00 0.00 38.40 3.01
3270 3323 4.647399 GGTATCAGAGCTAAGGTCTTGAGT 59.353 45.833 0.00 0.00 38.40 3.41
3271 3324 4.646945 TGGTATCAGAGCTAAGGTCTTGAG 59.353 45.833 0.00 0.00 38.40 3.02
3272 3325 4.610333 TGGTATCAGAGCTAAGGTCTTGA 58.390 43.478 0.00 0.00 38.40 3.02
3273 3326 5.163364 ACATGGTATCAGAGCTAAGGTCTTG 60.163 44.000 0.00 0.00 38.40 3.02
3274 3327 4.965532 ACATGGTATCAGAGCTAAGGTCTT 59.034 41.667 0.00 0.00 38.40 3.01
3275 3328 4.551671 ACATGGTATCAGAGCTAAGGTCT 58.448 43.478 0.00 0.00 41.33 3.85
3276 3329 4.946478 ACATGGTATCAGAGCTAAGGTC 57.054 45.455 0.00 0.00 0.00 3.85
3277 3330 6.686632 GCTTAACATGGTATCAGAGCTAAGGT 60.687 42.308 5.14 0.00 0.00 3.50
3278 3331 5.698545 GCTTAACATGGTATCAGAGCTAAGG 59.301 44.000 5.14 0.00 0.00 2.69
3279 3332 6.520272 AGCTTAACATGGTATCAGAGCTAAG 58.480 40.000 12.07 0.00 37.45 2.18
3280 3333 6.485830 AGCTTAACATGGTATCAGAGCTAA 57.514 37.500 12.07 0.00 37.45 3.09
3281 3334 6.098266 TGAAGCTTAACATGGTATCAGAGCTA 59.902 38.462 13.71 0.00 38.19 3.32
3282 3335 5.104776 TGAAGCTTAACATGGTATCAGAGCT 60.105 40.000 8.58 8.58 40.64 4.09
3283 3336 5.118990 TGAAGCTTAACATGGTATCAGAGC 58.881 41.667 0.00 4.31 0.00 4.09
3284 3337 6.293298 GCATGAAGCTTAACATGGTATCAGAG 60.293 42.308 22.64 3.88 42.53 3.35
3285 3338 5.528690 GCATGAAGCTTAACATGGTATCAGA 59.471 40.000 22.64 0.00 42.53 3.27
3286 3339 5.297527 TGCATGAAGCTTAACATGGTATCAG 59.702 40.000 22.64 3.67 45.94 2.90
3287 3340 5.066375 GTGCATGAAGCTTAACATGGTATCA 59.934 40.000 22.64 13.05 45.94 2.15
3288 3341 5.297776 AGTGCATGAAGCTTAACATGGTATC 59.702 40.000 22.64 11.22 45.94 2.24
3289 3342 5.195940 AGTGCATGAAGCTTAACATGGTAT 58.804 37.500 22.64 0.00 45.94 2.73
3290 3343 4.588899 AGTGCATGAAGCTTAACATGGTA 58.411 39.130 22.64 0.00 45.94 3.25
3291 3344 3.424703 AGTGCATGAAGCTTAACATGGT 58.575 40.909 22.64 0.00 45.94 3.55
3292 3345 4.497006 GCTAGTGCATGAAGCTTAACATGG 60.497 45.833 22.64 11.36 45.94 3.66
3293 3346 4.497006 GGCTAGTGCATGAAGCTTAACATG 60.497 45.833 19.04 19.04 45.94 3.21
3294 3347 3.629398 GGCTAGTGCATGAAGCTTAACAT 59.371 43.478 14.92 0.00 45.94 2.71
3295 3348 3.009723 GGCTAGTGCATGAAGCTTAACA 58.990 45.455 14.92 0.00 45.94 2.41
3296 3349 3.009723 TGGCTAGTGCATGAAGCTTAAC 58.990 45.455 14.92 0.00 45.94 2.01
3297 3350 3.348647 TGGCTAGTGCATGAAGCTTAA 57.651 42.857 14.92 0.00 45.94 1.85
3298 3351 3.009723 GTTGGCTAGTGCATGAAGCTTA 58.990 45.455 14.92 5.14 45.94 3.09
3299 3352 1.815003 GTTGGCTAGTGCATGAAGCTT 59.185 47.619 14.92 0.00 45.94 3.74
3300 3353 1.457346 GTTGGCTAGTGCATGAAGCT 58.543 50.000 14.92 0.00 45.94 3.74
3301 3354 0.097674 CGTTGGCTAGTGCATGAAGC 59.902 55.000 0.00 8.84 45.96 3.86
3302 3355 0.097674 GCGTTGGCTAGTGCATGAAG 59.902 55.000 0.00 0.00 41.91 3.02
3303 3356 0.605050 TGCGTTGGCTAGTGCATGAA 60.605 50.000 0.00 0.00 41.91 2.57
3304 3357 0.605050 TTGCGTTGGCTAGTGCATGA 60.605 50.000 0.00 0.00 41.91 3.07
3305 3358 0.454957 GTTGCGTTGGCTAGTGCATG 60.455 55.000 0.00 0.00 41.91 4.06
3306 3359 1.586154 GGTTGCGTTGGCTAGTGCAT 61.586 55.000 0.00 0.00 41.91 3.96
3307 3360 2.258013 GGTTGCGTTGGCTAGTGCA 61.258 57.895 0.00 0.00 41.91 4.57
3308 3361 1.791103 TTGGTTGCGTTGGCTAGTGC 61.791 55.000 0.00 0.00 40.82 4.40
3309 3362 0.665835 TTTGGTTGCGTTGGCTAGTG 59.334 50.000 0.00 0.00 40.82 2.74
3310 3363 1.336755 CTTTTGGTTGCGTTGGCTAGT 59.663 47.619 0.00 0.00 40.82 2.57
3311 3364 1.336755 ACTTTTGGTTGCGTTGGCTAG 59.663 47.619 0.00 0.00 40.82 3.42
3312 3365 1.335496 GACTTTTGGTTGCGTTGGCTA 59.665 47.619 0.00 0.00 40.82 3.93
3313 3366 0.102300 GACTTTTGGTTGCGTTGGCT 59.898 50.000 0.00 0.00 40.82 4.75
3314 3367 0.874175 GGACTTTTGGTTGCGTTGGC 60.874 55.000 0.00 0.00 40.52 4.52
3315 3368 0.593773 CGGACTTTTGGTTGCGTTGG 60.594 55.000 0.00 0.00 0.00 3.77
3316 3369 0.378962 TCGGACTTTTGGTTGCGTTG 59.621 50.000 0.00 0.00 0.00 4.10
3317 3370 1.064952 CTTCGGACTTTTGGTTGCGTT 59.935 47.619 0.00 0.00 0.00 4.84
3318 3371 0.661020 CTTCGGACTTTTGGTTGCGT 59.339 50.000 0.00 0.00 0.00 5.24
3319 3372 0.661020 ACTTCGGACTTTTGGTTGCG 59.339 50.000 0.00 0.00 0.00 4.85
3320 3373 1.673920 TCACTTCGGACTTTTGGTTGC 59.326 47.619 0.00 0.00 0.00 4.17
3321 3374 3.304659 CCATCACTTCGGACTTTTGGTTG 60.305 47.826 0.00 0.00 0.00 3.77
3322 3375 2.884639 CCATCACTTCGGACTTTTGGTT 59.115 45.455 0.00 0.00 0.00 3.67
3323 3376 2.105821 TCCATCACTTCGGACTTTTGGT 59.894 45.455 0.00 0.00 0.00 3.67
3324 3377 2.778299 TCCATCACTTCGGACTTTTGG 58.222 47.619 0.00 0.00 0.00 3.28
3325 3378 4.320494 CCTTTCCATCACTTCGGACTTTTG 60.320 45.833 0.00 0.00 0.00 2.44
3326 3379 3.821033 CCTTTCCATCACTTCGGACTTTT 59.179 43.478 0.00 0.00 0.00 2.27
3327 3380 3.412386 CCTTTCCATCACTTCGGACTTT 58.588 45.455 0.00 0.00 0.00 2.66
3328 3381 2.290323 CCCTTTCCATCACTTCGGACTT 60.290 50.000 0.00 0.00 0.00 3.01
3329 3382 1.279271 CCCTTTCCATCACTTCGGACT 59.721 52.381 0.00 0.00 0.00 3.85
3330 3383 1.739067 CCCTTTCCATCACTTCGGAC 58.261 55.000 0.00 0.00 0.00 4.79
3331 3384 0.035439 GCCCTTTCCATCACTTCGGA 60.035 55.000 0.00 0.00 0.00 4.55
3332 3385 1.032114 GGCCCTTTCCATCACTTCGG 61.032 60.000 0.00 0.00 0.00 4.30
3333 3386 0.322456 TGGCCCTTTCCATCACTTCG 60.322 55.000 0.00 0.00 0.00 3.79
3334 3387 1.272147 ACTGGCCCTTTCCATCACTTC 60.272 52.381 0.00 0.00 35.22 3.01
3335 3388 0.779997 ACTGGCCCTTTCCATCACTT 59.220 50.000 0.00 0.00 35.22 3.16
3336 3389 0.038744 CACTGGCCCTTTCCATCACT 59.961 55.000 0.00 0.00 35.22 3.41
3337 3390 1.598701 GCACTGGCCCTTTCCATCAC 61.599 60.000 0.00 0.00 35.22 3.06
3338 3391 1.304381 GCACTGGCCCTTTCCATCA 60.304 57.895 0.00 0.00 35.22 3.07
3339 3392 0.899717 TTGCACTGGCCCTTTCCATC 60.900 55.000 0.00 0.00 40.13 3.51
3340 3393 0.252375 ATTGCACTGGCCCTTTCCAT 60.252 50.000 0.00 0.00 40.13 3.41
3341 3394 0.899717 GATTGCACTGGCCCTTTCCA 60.900 55.000 0.00 0.00 40.13 3.53
3342 3395 1.607801 GGATTGCACTGGCCCTTTCC 61.608 60.000 0.00 0.00 40.13 3.13
3343 3396 0.899717 TGGATTGCACTGGCCCTTTC 60.900 55.000 0.00 0.00 40.13 2.62
3344 3397 1.155859 TGGATTGCACTGGCCCTTT 59.844 52.632 0.00 0.00 40.13 3.11
3345 3398 1.607467 GTGGATTGCACTGGCCCTT 60.607 57.895 0.00 0.00 40.13 3.95
3346 3399 2.036256 GTGGATTGCACTGGCCCT 59.964 61.111 0.00 0.00 40.13 5.19
3347 3400 0.395586 TATGTGGATTGCACTGGCCC 60.396 55.000 9.80 0.00 40.13 5.80
3348 3401 1.696063 ATATGTGGATTGCACTGGCC 58.304 50.000 9.80 0.00 40.13 5.36
3349 3402 3.251729 CAGTATATGTGGATTGCACTGGC 59.748 47.826 9.80 0.00 41.68 4.85
3350 3403 4.454678 ACAGTATATGTGGATTGCACTGG 58.545 43.478 9.80 0.00 41.91 4.00
3351 3404 6.538381 TGTTACAGTATATGTGGATTGCACTG 59.462 38.462 9.80 1.13 43.80 3.66
3352 3405 6.649155 TGTTACAGTATATGTGGATTGCACT 58.351 36.000 9.80 0.00 43.80 4.40
3353 3406 6.918892 TGTTACAGTATATGTGGATTGCAC 57.081 37.500 0.72 0.72 43.80 4.57
3354 3407 8.518430 AATTGTTACAGTATATGTGGATTGCA 57.482 30.769 0.00 0.00 43.80 4.08
3355 3408 9.878599 GTAATTGTTACAGTATATGTGGATTGC 57.121 33.333 0.00 0.00 43.80 3.56
3358 3411 9.555727 GTGGTAATTGTTACAGTATATGTGGAT 57.444 33.333 2.68 0.00 43.80 3.41
3359 3412 7.988599 GGTGGTAATTGTTACAGTATATGTGGA 59.011 37.037 2.68 0.00 43.80 4.02
3360 3413 7.990886 AGGTGGTAATTGTTACAGTATATGTGG 59.009 37.037 2.68 0.00 43.80 4.17
3361 3414 8.826710 CAGGTGGTAATTGTTACAGTATATGTG 58.173 37.037 2.68 0.00 43.80 3.21
3362 3415 8.764558 TCAGGTGGTAATTGTTACAGTATATGT 58.235 33.333 2.68 0.00 46.45 2.29
3363 3416 9.607988 TTCAGGTGGTAATTGTTACAGTATATG 57.392 33.333 2.68 0.00 37.88 1.78
3364 3417 9.609346 GTTCAGGTGGTAATTGTTACAGTATAT 57.391 33.333 2.68 0.00 37.88 0.86
3365 3418 8.595421 TGTTCAGGTGGTAATTGTTACAGTATA 58.405 33.333 2.68 0.00 37.88 1.47
3366 3419 7.455058 TGTTCAGGTGGTAATTGTTACAGTAT 58.545 34.615 2.68 0.00 37.88 2.12
3367 3420 6.828788 TGTTCAGGTGGTAATTGTTACAGTA 58.171 36.000 2.68 0.00 37.88 2.74
3368 3421 5.686753 TGTTCAGGTGGTAATTGTTACAGT 58.313 37.500 2.68 0.00 37.88 3.55
3369 3422 6.655003 AGATGTTCAGGTGGTAATTGTTACAG 59.345 38.462 2.68 0.00 37.88 2.74
3370 3423 6.539173 AGATGTTCAGGTGGTAATTGTTACA 58.461 36.000 2.68 0.00 37.88 2.41
3371 3424 8.612619 CATAGATGTTCAGGTGGTAATTGTTAC 58.387 37.037 0.00 0.00 35.39 2.50
3372 3425 8.325787 ACATAGATGTTCAGGTGGTAATTGTTA 58.674 33.333 0.00 0.00 37.90 2.41
3373 3426 7.175104 ACATAGATGTTCAGGTGGTAATTGTT 58.825 34.615 0.00 0.00 37.90 2.83
3374 3427 6.721318 ACATAGATGTTCAGGTGGTAATTGT 58.279 36.000 0.00 0.00 37.90 2.71
3375 3428 8.731275 TTACATAGATGTTCAGGTGGTAATTG 57.269 34.615 0.00 0.00 41.97 2.32
3437 3490 6.719370 TCAAACAATGAGGCCTTAACATAAGT 59.281 34.615 6.77 5.94 33.04 2.24
3680 3733 4.338964 ACTGTGTGATTCTTTGCAACATGA 59.661 37.500 0.00 0.00 0.00 3.07
3685 3738 6.052360 TGTAGTACTGTGTGATTCTTTGCAA 58.948 36.000 5.39 0.00 0.00 4.08
3707 3760 7.701539 TTGTCATGAATACCAATAGCTTTGT 57.298 32.000 0.00 0.00 0.00 2.83
3709 3762 7.201938 CCCATTGTCATGAATACCAATAGCTTT 60.202 37.037 8.48 0.00 31.07 3.51
4247 7602 5.577835 TGAACGAAGGACAAGAAAAATGTG 58.422 37.500 0.00 0.00 0.00 3.21
4250 7605 7.038154 TGAATGAACGAAGGACAAGAAAAAT 57.962 32.000 0.00 0.00 0.00 1.82
4262 7617 6.591261 CAGATAGCATGATGAATGAACGAAG 58.409 40.000 0.00 0.00 38.72 3.79
4950 8305 6.363357 GCAGTCATTTCAAGTCAAACATTACC 59.637 38.462 0.00 0.00 0.00 2.85
5031 8386 4.261994 CCACCCAAAACTAGACAACCAATG 60.262 45.833 0.00 0.00 0.00 2.82
5251 8616 3.972133 TCTTCTTACCCTGGTCGTCATA 58.028 45.455 0.00 0.00 0.00 2.15
5257 8622 8.678199 CAAGAAAATAATCTTCTTACCCTGGTC 58.322 37.037 0.00 0.00 40.37 4.02
5258 8623 7.122799 GCAAGAAAATAATCTTCTTACCCTGGT 59.877 37.037 0.00 0.00 40.37 4.00
5313 8678 6.289064 AGTTACCTCACTAGTCACAAAAAGG 58.711 40.000 0.00 0.00 0.00 3.11
5327 8692 4.763793 GGGGGAAGTTAAAAGTTACCTCAC 59.236 45.833 10.67 0.34 41.71 3.51
5351 8716 4.191544 TCGGCTTCTTCCACATTATTCAG 58.808 43.478 0.00 0.00 0.00 3.02
5411 8776 1.229428 CCGACAGTGTTTCAGCATGT 58.771 50.000 0.00 0.00 37.40 3.21
5465 8830 4.213564 AGTTGCTGCTGCTATAAACTCT 57.786 40.909 17.00 0.00 40.48 3.24
5539 8904 4.580167 TCGCAGCTAGCATAAATCCATTTT 59.420 37.500 18.83 0.00 46.13 1.82
5609 8974 4.942483 TCGACTTGGTTAACACCTTCAAAA 59.058 37.500 8.10 0.00 44.61 2.44
5610 8975 4.515361 TCGACTTGGTTAACACCTTCAAA 58.485 39.130 8.10 0.00 44.61 2.69
5677 9043 2.300723 ACAGTCGTACTTGCACCCAATA 59.699 45.455 0.00 0.00 0.00 1.90
5678 9044 1.071699 ACAGTCGTACTTGCACCCAAT 59.928 47.619 0.00 0.00 0.00 3.16
5680 9046 0.466543 AACAGTCGTACTTGCACCCA 59.533 50.000 0.00 0.00 0.00 4.51
5682 9048 1.525619 GACAACAGTCGTACTTGCACC 59.474 52.381 0.00 0.00 0.00 5.01
5683 9049 1.525619 GGACAACAGTCGTACTTGCAC 59.474 52.381 0.00 0.00 33.01 4.57
5684 9050 1.137282 TGGACAACAGTCGTACTTGCA 59.863 47.619 0.00 0.00 33.01 4.08
5739 9137 3.744940 ATCCCAAAAGGCTGAAGATCA 57.255 42.857 0.00 0.00 34.51 2.92
5779 9177 8.910944 CCAGATCATTTACAAGAAATGGAGAAT 58.089 33.333 9.49 0.00 38.00 2.40
5846 9244 8.644216 CACTAATGGGGTAAGTTAAAAGGTTTT 58.356 33.333 0.00 0.00 0.00 2.43
5849 9247 7.093965 TCACTAATGGGGTAAGTTAAAAGGT 57.906 36.000 0.00 0.00 0.00 3.50
5870 9270 7.086376 TCTATTTACAACGACTGTTACCTCAC 58.914 38.462 0.00 0.00 39.64 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.