Multiple sequence alignment - TraesCS4D01G152600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G152600 chr4D 100.000 4118 0 0 1 4118 185799125 185795008 0.000000e+00 7605
1 TraesCS4D01G152600 chr4A 93.575 2459 84 21 784 3217 284629154 284631563 0.000000e+00 3598
2 TraesCS4D01G152600 chr4A 87.000 800 87 11 1 789 36308003 36307210 0.000000e+00 885
3 TraesCS4D01G152600 chr4A 86.510 341 30 7 3759 4083 218699676 218699336 1.090000e-95 361
4 TraesCS4D01G152600 chr4A 91.892 185 14 1 3528 3711 284631561 284631745 1.470000e-64 257
5 TraesCS4D01G152600 chr4B 96.761 1235 35 3 784 2013 340990936 340992170 0.000000e+00 2054
6 TraesCS4D01G152600 chr4B 96.166 1226 38 3 2014 3238 340997836 340999053 0.000000e+00 1995
7 TraesCS4D01G152600 chr4B 88.750 320 30 6 3215 3531 143716315 143715999 1.800000e-103 387
8 TraesCS4D01G152600 chr4B 94.792 192 10 0 3529 3720 340999537 340999728 2.410000e-77 300
9 TraesCS4D01G152600 chr7D 87.722 790 83 12 1 783 3330894 3331676 0.000000e+00 909
10 TraesCS4D01G152600 chr2B 87.231 791 84 15 1 783 414080282 414081063 0.000000e+00 885
11 TraesCS4D01G152600 chr2B 87.425 334 38 3 3201 3531 357225744 357226076 8.350000e-102 381
12 TraesCS4D01G152600 chr1B 87.500 768 72 18 7 760 605271250 605270493 0.000000e+00 865
13 TraesCS4D01G152600 chr1B 88.088 319 36 2 3215 3531 26825801 26826119 1.080000e-100 377
14 TraesCS4D01G152600 chrUn 86.458 768 90 10 1 762 282594306 282593547 0.000000e+00 830
15 TraesCS4D01G152600 chrUn 86.536 765 89 10 1 759 287534354 287535110 0.000000e+00 830
16 TraesCS4D01G152600 chrUn 86.536 765 89 10 1 759 287540475 287541231 0.000000e+00 830
17 TraesCS4D01G152600 chrUn 86.536 765 89 10 1 759 302880611 302881367 0.000000e+00 830
18 TraesCS4D01G152600 chr2D 85.934 782 95 14 1 775 206451513 206452286 0.000000e+00 821
19 TraesCS4D01G152600 chr3B 88.889 324 32 3 3211 3531 223294062 223293740 2.980000e-106 396
20 TraesCS4D01G152600 chr3B 89.062 320 30 4 3216 3531 653633669 653633987 3.860000e-105 392
21 TraesCS4D01G152600 chr7B 89.130 322 27 7 3215 3531 378031896 378031578 1.070000e-105 394
22 TraesCS4D01G152600 chr7B 88.438 320 33 3 3215 3531 743660974 743660656 2.320000e-102 383
23 TraesCS4D01G152600 chr7B 87.423 326 37 3 3208 3531 506738914 506738591 5.030000e-99 372
24 TraesCS4D01G152600 chr5B 88.438 320 32 4 3215 3531 122465967 122465650 8.350000e-102 381
25 TraesCS4D01G152600 chr6A 85.791 373 30 11 3759 4118 174371556 174371194 1.400000e-99 374
26 TraesCS4D01G152600 chr5D 85.215 372 33 11 3760 4118 122878535 122878897 3.030000e-96 363
27 TraesCS4D01G152600 chr5A 85.095 369 35 11 3759 4113 418452708 418453070 3.910000e-95 359
28 TraesCS4D01G152600 chr7A 86.186 333 35 7 3763 4084 25253467 25253799 2.360000e-92 350
29 TraesCS4D01G152600 chr2A 86.503 326 30 8 3772 4084 167960447 167960771 3.050000e-91 346
30 TraesCS4D01G152600 chr2A 83.646 373 36 11 3763 4118 468539855 468539491 1.100000e-85 327
31 TraesCS4D01G152600 chr1A 85.546 339 33 10 3763 4088 316238589 316238924 1.420000e-89 340
32 TraesCS4D01G152600 chr1A 86.478 318 25 9 3812 4118 518608067 518607757 2.370000e-87 333


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G152600 chr4D 185795008 185799125 4117 True 7605.0 7605 100.0000 1 4118 1 chr4D.!!$R1 4117
1 TraesCS4D01G152600 chr4A 284629154 284631745 2591 False 1927.5 3598 92.7335 784 3711 2 chr4A.!!$F1 2927
2 TraesCS4D01G152600 chr4A 36307210 36308003 793 True 885.0 885 87.0000 1 789 1 chr4A.!!$R1 788
3 TraesCS4D01G152600 chr4B 340990936 340992170 1234 False 2054.0 2054 96.7610 784 2013 1 chr4B.!!$F1 1229
4 TraesCS4D01G152600 chr4B 340997836 340999728 1892 False 1147.5 1995 95.4790 2014 3720 2 chr4B.!!$F2 1706
5 TraesCS4D01G152600 chr7D 3330894 3331676 782 False 909.0 909 87.7220 1 783 1 chr7D.!!$F1 782
6 TraesCS4D01G152600 chr2B 414080282 414081063 781 False 885.0 885 87.2310 1 783 1 chr2B.!!$F2 782
7 TraesCS4D01G152600 chr1B 605270493 605271250 757 True 865.0 865 87.5000 7 760 1 chr1B.!!$R1 753
8 TraesCS4D01G152600 chrUn 282593547 282594306 759 True 830.0 830 86.4580 1 762 1 chrUn.!!$R1 761
9 TraesCS4D01G152600 chrUn 287534354 287535110 756 False 830.0 830 86.5360 1 759 1 chrUn.!!$F1 758
10 TraesCS4D01G152600 chrUn 287540475 287541231 756 False 830.0 830 86.5360 1 759 1 chrUn.!!$F2 758
11 TraesCS4D01G152600 chrUn 302880611 302881367 756 False 830.0 830 86.5360 1 759 1 chrUn.!!$F3 758
12 TraesCS4D01G152600 chr2D 206451513 206452286 773 False 821.0 821 85.9340 1 775 1 chr2D.!!$F1 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 721 0.038159 GGAGTCTATTCGGCCGGATG 60.038 60.000 29.73 18.14 0.00 3.51 F
782 796 0.716108 GGCGCGATATACATGTCTGC 59.284 55.000 12.10 0.00 0.00 4.26 F
1613 1637 1.735386 CTGACTTGCTGAGGATGGTG 58.265 55.000 0.00 0.00 0.00 4.17 F
2788 2826 1.226717 GGACAAGAGAGCCTACGCG 60.227 63.158 3.53 3.53 41.18 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2018 2042 0.038890 TGATTTCGGGTGGCATGGAA 59.961 50.000 0.0 0.0 0.00 3.53 R
2098 2135 1.564348 GGATAGTTGGGCTTGGGAGAA 59.436 52.381 0.0 0.0 0.00 2.87 R
3084 3122 0.039165 CCTTTCCGGCAACTTTCTGC 60.039 55.000 0.0 0.0 41.85 4.26 R
3783 4085 0.320508 GTTCCTCGACCTCACCAACC 60.321 60.000 0.0 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.273327 GCATCAAAGACCCCCAAACTG 59.727 52.381 0.00 0.00 0.00 3.16
69 70 1.578206 GAGGCAGCCCGAAAAGACAC 61.578 60.000 8.22 0.00 35.76 3.67
77 78 2.814336 GCCCGAAAAGACACTGAAAGAT 59.186 45.455 0.00 0.00 37.43 2.40
114 115 4.321899 GCAATCTAGGTTTGCCATTGTTCA 60.322 41.667 16.13 0.00 42.84 3.18
126 127 2.439409 CATTGTTCATGGTCCTGCTCA 58.561 47.619 0.00 0.00 0.00 4.26
211 214 3.153130 TCTCGATCTAAGAGAGGCATGG 58.847 50.000 0.00 0.00 39.57 3.66
253 256 0.398696 TGTGGGTAGCCGTGTCAAAT 59.601 50.000 6.45 0.00 0.00 2.32
257 260 1.369625 GGTAGCCGTGTCAAATCAGG 58.630 55.000 0.00 0.00 0.00 3.86
317 320 4.796038 ACAGGGAGATTGAAAATGCAAG 57.204 40.909 0.00 0.00 0.00 4.01
321 324 3.056322 GGGAGATTGAAAATGCAAGCACT 60.056 43.478 0.00 0.00 36.67 4.40
635 647 1.581934 GCAGAGCATACACCGCATAA 58.418 50.000 0.00 0.00 0.00 1.90
685 697 6.422701 CGGATATTCTATTTTACAGTTCCGCA 59.577 38.462 0.00 0.00 36.40 5.69
707 719 2.191513 CGGAGTCTATTCGGCCGGA 61.192 63.158 27.83 20.01 38.40 5.14
708 720 1.524863 CGGAGTCTATTCGGCCGGAT 61.525 60.000 25.17 25.17 38.40 4.18
709 721 0.038159 GGAGTCTATTCGGCCGGATG 60.038 60.000 29.73 18.14 0.00 3.51
728 742 3.564027 CGGCCGGCTCGTGAAATC 61.564 66.667 28.56 4.75 0.00 2.17
762 776 2.015587 TGTAAACGAGTTTTGCGGGTT 58.984 42.857 6.53 0.00 32.71 4.11
767 781 4.279043 AGTTTTGCGGGTTGGCGC 62.279 61.111 0.00 0.00 35.06 6.53
775 789 4.762825 GGGTTGGCGCGATATACA 57.237 55.556 12.10 0.00 0.00 2.29
776 790 3.226884 GGGTTGGCGCGATATACAT 57.773 52.632 12.10 0.00 0.00 2.29
777 791 0.796312 GGGTTGGCGCGATATACATG 59.204 55.000 12.10 0.00 0.00 3.21
778 792 1.508632 GGTTGGCGCGATATACATGT 58.491 50.000 12.10 2.69 0.00 3.21
779 793 1.459592 GGTTGGCGCGATATACATGTC 59.540 52.381 12.10 0.00 0.00 3.06
780 794 2.404215 GTTGGCGCGATATACATGTCT 58.596 47.619 12.10 0.00 0.00 3.41
781 795 2.064573 TGGCGCGATATACATGTCTG 57.935 50.000 12.10 0.00 0.00 3.51
782 796 0.716108 GGCGCGATATACATGTCTGC 59.284 55.000 12.10 0.00 0.00 4.26
908 932 3.067833 CGACACCTTTTCCTTCTTCCTC 58.932 50.000 0.00 0.00 0.00 3.71
971 995 2.163509 CCTCGTAGATCCGATCACCAT 58.836 52.381 11.01 0.00 36.08 3.55
1304 1328 3.200605 TCCTGCTTCTTGCTCCATGATTA 59.799 43.478 0.00 0.00 43.37 1.75
1521 1545 3.482786 GCATGTGAACACTTTAGCGAAG 58.517 45.455 6.51 1.90 41.32 3.79
1561 1585 6.577103 TCCTTGCTGTTAGATCTATTGAGTG 58.423 40.000 2.58 0.00 0.00 3.51
1613 1637 1.735386 CTGACTTGCTGAGGATGGTG 58.265 55.000 0.00 0.00 0.00 4.17
1706 1730 9.219603 TGATCTACTTTCATAGTTTGTTTCTGG 57.780 33.333 0.00 0.00 38.33 3.86
1716 1740 3.316308 AGTTTGTTTCTGGACATGTCTGC 59.684 43.478 24.50 10.25 0.00 4.26
1717 1741 2.636647 TGTTTCTGGACATGTCTGCA 57.363 45.000 24.50 14.22 0.00 4.41
2018 2042 4.102113 GCAGGATTGGCCAACACT 57.898 55.556 23.27 18.94 40.02 3.55
2079 2116 4.280174 TCTCCGCTCAAACTTAGTACTTGT 59.720 41.667 0.00 0.00 0.00 3.16
2183 2220 8.833231 TCTTCAAGTTATAAGACTTCACTTGG 57.167 34.615 22.54 14.07 43.02 3.61
2218 2255 3.997021 CAGGTCTAATGTGGTGAGTTGTC 59.003 47.826 0.00 0.00 0.00 3.18
2294 2331 3.243101 GGAAAGATGCGATCGTCTGACTA 60.243 47.826 17.81 0.00 38.52 2.59
2305 2342 2.486982 TCGTCTGACTACCACAGCTTAC 59.513 50.000 6.21 0.00 35.61 2.34
2426 2463 5.671329 GCACGGAACTAAGACATGTCAAATC 60.671 44.000 27.02 16.10 0.00 2.17
2548 2585 2.821378 TCGTTCTCCTGTTTCGTCCATA 59.179 45.455 0.00 0.00 0.00 2.74
2619 2656 3.430651 CCTTTGTGTTGTGGAAGTTGCAT 60.431 43.478 0.00 0.00 0.00 3.96
2766 2804 4.104086 TGATGAAGTAGGTGTGGGATCTT 58.896 43.478 0.00 0.00 0.00 2.40
2788 2826 1.226717 GGACAAGAGAGCCTACGCG 60.227 63.158 3.53 3.53 41.18 6.01
3084 3122 0.914644 ATGGGATGGGATGGATAGCG 59.085 55.000 0.00 0.00 0.00 4.26
3157 3195 6.656693 TGTGTTTTGGTGAATTTGTTGGAAAT 59.343 30.769 0.00 0.00 0.00 2.17
3161 3199 3.713764 TGGTGAATTTGTTGGAAATGGGT 59.286 39.130 0.00 0.00 0.00 4.51
3164 3202 3.072184 TGAATTTGTTGGAAATGGGTGGG 59.928 43.478 0.00 0.00 0.00 4.61
3192 3231 2.871633 GGTTTGTTGTTCCTGCCATTTG 59.128 45.455 0.00 0.00 0.00 2.32
3232 3271 5.187186 TGTTACATACTCCCTCTGTTCCTTC 59.813 44.000 0.00 0.00 0.00 3.46
3238 3277 4.168101 ACTCCCTCTGTTCCTTCATGTAA 58.832 43.478 0.00 0.00 0.00 2.41
3258 3528 6.174760 TGTAAGGTGTATTATTTTCGGCACT 58.825 36.000 0.00 0.00 0.00 4.40
3263 3533 5.321516 GTGTATTATTTTCGGCACTGTGAC 58.678 41.667 12.86 8.02 0.00 3.67
3273 3543 1.383456 GCACTGTGACCAAGGCACAA 61.383 55.000 12.86 0.00 44.75 3.33
3290 3560 7.886629 AGGCACAAAATTATAGACATGTGAT 57.113 32.000 1.15 0.00 40.32 3.06
3303 3573 4.876107 AGACATGTGATGACGAAATTACCC 59.124 41.667 1.15 0.00 0.00 3.69
3325 3595 4.511082 CCTTGGCAAATTTGTTGGTTAGTG 59.489 41.667 19.03 1.75 0.00 2.74
3326 3596 4.065321 TGGCAAATTTGTTGGTTAGTGG 57.935 40.909 19.03 0.00 0.00 4.00
3338 3608 5.240623 TGTTGGTTAGTGGCAAGTAAATCAG 59.759 40.000 0.00 0.00 0.00 2.90
3339 3609 3.756434 TGGTTAGTGGCAAGTAAATCAGC 59.244 43.478 0.00 0.00 0.00 4.26
3345 3615 4.020218 AGTGGCAAGTAAATCAGCTAGACA 60.020 41.667 0.00 0.00 0.00 3.41
3346 3616 4.331168 GTGGCAAGTAAATCAGCTAGACAG 59.669 45.833 0.00 0.00 0.00 3.51
3352 3622 5.983540 AGTAAATCAGCTAGACAGGGAAAG 58.016 41.667 0.00 0.00 0.00 2.62
3356 3626 5.606348 ATCAGCTAGACAGGGAAAGTAAG 57.394 43.478 0.00 0.00 0.00 2.34
3362 3632 6.775629 AGCTAGACAGGGAAAGTAAGAGATAG 59.224 42.308 0.00 0.00 0.00 2.08
3370 3640 7.718753 CAGGGAAAGTAAGAGATAGATGCAATT 59.281 37.037 0.00 0.00 0.00 2.32
3371 3641 7.718753 AGGGAAAGTAAGAGATAGATGCAATTG 59.281 37.037 0.00 0.00 0.00 2.32
3372 3642 7.716998 GGGAAAGTAAGAGATAGATGCAATTGA 59.283 37.037 10.34 0.00 0.00 2.57
3373 3643 8.555361 GGAAAGTAAGAGATAGATGCAATTGAC 58.445 37.037 10.34 1.02 0.00 3.18
3374 3644 9.102757 GAAAGTAAGAGATAGATGCAATTGACA 57.897 33.333 10.34 7.33 0.00 3.58
3375 3645 8.430801 AAGTAAGAGATAGATGCAATTGACAC 57.569 34.615 10.34 0.00 0.00 3.67
3376 3646 7.559486 AGTAAGAGATAGATGCAATTGACACA 58.441 34.615 10.34 0.00 0.00 3.72
3377 3647 6.674694 AAGAGATAGATGCAATTGACACAC 57.325 37.500 10.34 5.44 0.00 3.82
3378 3648 5.737860 AGAGATAGATGCAATTGACACACA 58.262 37.500 10.34 0.00 0.00 3.72
3379 3649 6.354938 AGAGATAGATGCAATTGACACACAT 58.645 36.000 10.34 2.19 0.00 3.21
3380 3650 7.503549 AGAGATAGATGCAATTGACACACATA 58.496 34.615 10.34 0.00 0.00 2.29
3381 3651 8.155510 AGAGATAGATGCAATTGACACACATAT 58.844 33.333 10.34 2.64 0.00 1.78
3382 3652 9.428097 GAGATAGATGCAATTGACACACATATA 57.572 33.333 10.34 4.85 0.00 0.86
3383 3653 9.212641 AGATAGATGCAATTGACACACATATAC 57.787 33.333 10.34 0.90 0.00 1.47
3384 3654 9.212641 GATAGATGCAATTGACACACATATACT 57.787 33.333 10.34 0.00 0.00 2.12
3385 3655 7.870509 AGATGCAATTGACACACATATACTT 57.129 32.000 10.34 0.00 0.00 2.24
3386 3656 8.284945 AGATGCAATTGACACACATATACTTT 57.715 30.769 10.34 0.00 0.00 2.66
3387 3657 8.742777 AGATGCAATTGACACACATATACTTTT 58.257 29.630 10.34 0.00 0.00 2.27
3388 3658 8.915871 ATGCAATTGACACACATATACTTTTC 57.084 30.769 10.34 0.00 0.00 2.29
3389 3659 8.109705 TGCAATTGACACACATATACTTTTCT 57.890 30.769 10.34 0.00 0.00 2.52
3390 3660 8.575589 TGCAATTGACACACATATACTTTTCTT 58.424 29.630 10.34 0.00 0.00 2.52
3391 3661 9.065871 GCAATTGACACACATATACTTTTCTTC 57.934 33.333 10.34 0.00 0.00 2.87
3397 3667 9.118236 GACACACATATACTTTTCTTCTTTTGC 57.882 33.333 0.00 0.00 0.00 3.68
3398 3668 8.850156 ACACACATATACTTTTCTTCTTTTGCT 58.150 29.630 0.00 0.00 0.00 3.91
3405 3675 8.691661 ATACTTTTCTTCTTTTGCTACAAGGA 57.308 30.769 0.00 0.00 0.00 3.36
3406 3676 7.032377 ACTTTTCTTCTTTTGCTACAAGGAG 57.968 36.000 0.00 0.00 0.00 3.69
3407 3677 6.828785 ACTTTTCTTCTTTTGCTACAAGGAGA 59.171 34.615 0.00 0.00 34.53 3.71
3408 3678 6.867662 TTTCTTCTTTTGCTACAAGGAGAG 57.132 37.500 2.55 0.00 37.22 3.20
3409 3679 5.808366 TCTTCTTTTGCTACAAGGAGAGA 57.192 39.130 0.00 0.00 31.82 3.10
3410 3680 6.365970 TCTTCTTTTGCTACAAGGAGAGAT 57.634 37.500 0.00 0.00 31.82 2.75
3411 3681 7.482169 TCTTCTTTTGCTACAAGGAGAGATA 57.518 36.000 0.00 0.00 31.82 1.98
3412 3682 7.324178 TCTTCTTTTGCTACAAGGAGAGATAC 58.676 38.462 0.00 0.00 31.82 2.24
3413 3683 6.605471 TCTTTTGCTACAAGGAGAGATACA 57.395 37.500 0.00 0.00 0.00 2.29
3414 3684 7.187824 TCTTTTGCTACAAGGAGAGATACAT 57.812 36.000 0.00 0.00 0.00 2.29
3415 3685 8.306313 TCTTTTGCTACAAGGAGAGATACATA 57.694 34.615 0.00 0.00 0.00 2.29
3416 3686 8.198109 TCTTTTGCTACAAGGAGAGATACATAC 58.802 37.037 0.00 0.00 0.00 2.39
3417 3687 7.418337 TTTGCTACAAGGAGAGATACATACA 57.582 36.000 0.00 0.00 0.00 2.29
3418 3688 7.418337 TTGCTACAAGGAGAGATACATACAA 57.582 36.000 0.00 0.00 0.00 2.41
3419 3689 7.603180 TGCTACAAGGAGAGATACATACAAT 57.397 36.000 0.00 0.00 0.00 2.71
3420 3690 7.661968 TGCTACAAGGAGAGATACATACAATC 58.338 38.462 0.00 0.00 0.00 2.67
3421 3691 7.287696 TGCTACAAGGAGAGATACATACAATCA 59.712 37.037 0.00 0.00 0.00 2.57
3422 3692 7.812191 GCTACAAGGAGAGATACATACAATCAG 59.188 40.741 0.00 0.00 0.00 2.90
3423 3693 7.060383 ACAAGGAGAGATACATACAATCAGG 57.940 40.000 0.00 0.00 0.00 3.86
3424 3694 6.841229 ACAAGGAGAGATACATACAATCAGGA 59.159 38.462 0.00 0.00 0.00 3.86
3425 3695 7.015098 ACAAGGAGAGATACATACAATCAGGAG 59.985 40.741 0.00 0.00 0.00 3.69
3426 3696 6.857848 AGGAGAGATACATACAATCAGGAGA 58.142 40.000 0.00 0.00 0.00 3.71
3427 3697 6.947733 AGGAGAGATACATACAATCAGGAGAG 59.052 42.308 0.00 0.00 0.00 3.20
3428 3698 6.945435 GGAGAGATACATACAATCAGGAGAGA 59.055 42.308 0.00 0.00 0.00 3.10
3429 3699 7.121168 GGAGAGATACATACAATCAGGAGAGAG 59.879 44.444 0.00 0.00 0.00 3.20
3430 3700 7.754624 AGAGATACATACAATCAGGAGAGAGA 58.245 38.462 0.00 0.00 0.00 3.10
3431 3701 8.393259 AGAGATACATACAATCAGGAGAGAGAT 58.607 37.037 0.00 0.00 0.00 2.75
3432 3702 9.679661 GAGATACATACAATCAGGAGAGAGATA 57.320 37.037 0.00 0.00 0.00 1.98
3433 3703 9.461312 AGATACATACAATCAGGAGAGAGATAC 57.539 37.037 0.00 0.00 0.00 2.24
3434 3704 9.461312 GATACATACAATCAGGAGAGAGATACT 57.539 37.037 0.00 0.00 0.00 2.12
3435 3705 9.821240 ATACATACAATCAGGAGAGAGATACTT 57.179 33.333 0.00 0.00 0.00 2.24
3436 3706 8.546083 ACATACAATCAGGAGAGAGATACTTT 57.454 34.615 0.00 0.00 0.00 2.66
3437 3707 8.637986 ACATACAATCAGGAGAGAGATACTTTC 58.362 37.037 0.00 0.00 0.00 2.62
3438 3708 6.478512 ACAATCAGGAGAGAGATACTTTCC 57.521 41.667 0.00 0.00 46.46 3.13
3445 3715 6.056090 GGAGAGAGATACTTTCCCTTTTGT 57.944 41.667 0.00 0.00 42.11 2.83
3446 3716 6.110033 GGAGAGAGATACTTTCCCTTTTGTC 58.890 44.000 0.00 0.00 42.11 3.18
3447 3717 5.725362 AGAGAGATACTTTCCCTTTTGTCG 58.275 41.667 0.00 0.00 0.00 4.35
3451 3721 4.530946 AGATACTTTCCCTTTTGTCGAGGA 59.469 41.667 0.00 0.00 36.33 3.71
3459 3729 5.001232 TCCCTTTTGTCGAGGAATAACAAG 58.999 41.667 0.00 0.00 36.33 3.16
3460 3730 4.156008 CCCTTTTGTCGAGGAATAACAAGG 59.844 45.833 0.00 0.00 36.33 3.61
3461 3731 4.156008 CCTTTTGTCGAGGAATAACAAGGG 59.844 45.833 0.00 0.00 36.33 3.95
3463 3733 3.887621 TGTCGAGGAATAACAAGGGAG 57.112 47.619 0.00 0.00 0.00 4.30
3502 3785 6.022163 AGAAATGCACCTTTCATTCTGAAG 57.978 37.500 13.74 0.00 37.70 3.02
3506 3789 5.596836 TGCACCTTTCATTCTGAAGTTTT 57.403 34.783 0.00 0.00 37.70 2.43
3647 3949 7.041576 TCACGACATTATATAGTCTACAACGCT 60.042 37.037 0.00 0.00 32.68 5.07
3701 4003 1.603456 TGAAGTTGGCGATTGCTTCA 58.397 45.000 4.59 4.12 43.16 3.02
3720 4022 5.126061 GCTTCATCATCTAGGAGAGGAGATC 59.874 48.000 0.00 0.00 38.52 2.75
3721 4023 4.842574 TCATCATCTAGGAGAGGAGATCG 58.157 47.826 0.00 0.00 38.52 3.69
3722 4024 4.288366 TCATCATCTAGGAGAGGAGATCGT 59.712 45.833 0.00 0.00 38.52 3.73
3723 4025 5.485708 TCATCATCTAGGAGAGGAGATCGTA 59.514 44.000 0.00 0.00 38.52 3.43
3724 4026 5.414789 TCATCTAGGAGAGGAGATCGTAG 57.585 47.826 0.00 0.00 36.79 3.51
3725 4027 4.224147 TCATCTAGGAGAGGAGATCGTAGG 59.776 50.000 0.00 0.00 36.35 3.18
3726 4028 3.589641 TCTAGGAGAGGAGATCGTAGGT 58.410 50.000 0.00 0.00 36.35 3.08
3727 4029 3.975312 TCTAGGAGAGGAGATCGTAGGTT 59.025 47.826 0.00 0.00 36.35 3.50
3728 4030 3.673543 AGGAGAGGAGATCGTAGGTTT 57.326 47.619 0.00 0.00 0.00 3.27
3729 4031 3.983821 AGGAGAGGAGATCGTAGGTTTT 58.016 45.455 0.00 0.00 0.00 2.43
3730 4032 3.955551 AGGAGAGGAGATCGTAGGTTTTC 59.044 47.826 0.00 0.00 0.00 2.29
3731 4033 3.700038 GGAGAGGAGATCGTAGGTTTTCA 59.300 47.826 0.00 0.00 0.00 2.69
3732 4034 4.342665 GGAGAGGAGATCGTAGGTTTTCAT 59.657 45.833 0.00 0.00 0.00 2.57
3733 4035 5.508320 GGAGAGGAGATCGTAGGTTTTCATC 60.508 48.000 0.00 0.00 0.00 2.92
3734 4036 5.205056 AGAGGAGATCGTAGGTTTTCATCT 58.795 41.667 0.00 0.00 0.00 2.90
3735 4037 5.659079 AGAGGAGATCGTAGGTTTTCATCTT 59.341 40.000 0.00 0.00 0.00 2.40
3736 4038 6.155393 AGAGGAGATCGTAGGTTTTCATCTTT 59.845 38.462 0.00 0.00 0.00 2.52
3737 4039 6.109359 AGGAGATCGTAGGTTTTCATCTTTG 58.891 40.000 0.00 0.00 0.00 2.77
3738 4040 5.294552 GGAGATCGTAGGTTTTCATCTTTGG 59.705 44.000 0.00 0.00 0.00 3.28
3739 4041 5.805728 AGATCGTAGGTTTTCATCTTTGGT 58.194 37.500 0.00 0.00 0.00 3.67
3740 4042 6.942976 AGATCGTAGGTTTTCATCTTTGGTA 58.057 36.000 0.00 0.00 0.00 3.25
3741 4043 7.565680 AGATCGTAGGTTTTCATCTTTGGTAT 58.434 34.615 0.00 0.00 0.00 2.73
3742 4044 8.047310 AGATCGTAGGTTTTCATCTTTGGTATT 58.953 33.333 0.00 0.00 0.00 1.89
3743 4045 7.989416 TCGTAGGTTTTCATCTTTGGTATTT 57.011 32.000 0.00 0.00 0.00 1.40
3744 4046 9.675464 ATCGTAGGTTTTCATCTTTGGTATTTA 57.325 29.630 0.00 0.00 0.00 1.40
3745 4047 8.938906 TCGTAGGTTTTCATCTTTGGTATTTAC 58.061 33.333 0.00 0.00 0.00 2.01
3746 4048 8.943002 CGTAGGTTTTCATCTTTGGTATTTACT 58.057 33.333 0.00 0.00 0.00 2.24
3749 4051 8.957466 AGGTTTTCATCTTTGGTATTTACTAGC 58.043 33.333 0.00 0.00 0.00 3.42
3750 4052 8.736244 GGTTTTCATCTTTGGTATTTACTAGCA 58.264 33.333 0.00 0.00 36.07 3.49
3751 4053 9.556030 GTTTTCATCTTTGGTATTTACTAGCAC 57.444 33.333 0.00 0.00 37.55 4.40
3752 4054 8.856153 TTTCATCTTTGGTATTTACTAGCACA 57.144 30.769 0.00 0.00 37.55 4.57
3753 4055 8.856153 TTCATCTTTGGTATTTACTAGCACAA 57.144 30.769 0.00 0.00 37.55 3.33
3754 4056 8.856153 TCATCTTTGGTATTTACTAGCACAAA 57.144 30.769 0.00 0.00 37.55 2.83
3755 4057 9.461312 TCATCTTTGGTATTTACTAGCACAAAT 57.539 29.630 0.00 0.00 37.55 2.32
3756 4058 9.507280 CATCTTTGGTATTTACTAGCACAAATG 57.493 33.333 7.47 0.00 37.55 2.32
3769 4071 3.574614 GCACAAATGCGAAAATACCAGT 58.425 40.909 0.00 0.00 43.33 4.00
3770 4072 3.987220 GCACAAATGCGAAAATACCAGTT 59.013 39.130 0.00 0.00 43.33 3.16
3771 4073 4.089923 GCACAAATGCGAAAATACCAGTTC 59.910 41.667 0.00 0.00 43.33 3.01
3772 4074 4.621034 CACAAATGCGAAAATACCAGTTCC 59.379 41.667 0.00 0.00 0.00 3.62
3773 4075 4.522789 ACAAATGCGAAAATACCAGTTCCT 59.477 37.500 0.00 0.00 0.00 3.36
3774 4076 5.708230 ACAAATGCGAAAATACCAGTTCCTA 59.292 36.000 0.00 0.00 0.00 2.94
3775 4077 6.377146 ACAAATGCGAAAATACCAGTTCCTAT 59.623 34.615 0.00 0.00 0.00 2.57
3776 4078 6.377327 AATGCGAAAATACCAGTTCCTATG 57.623 37.500 0.00 0.00 0.00 2.23
3777 4079 5.092554 TGCGAAAATACCAGTTCCTATGA 57.907 39.130 0.00 0.00 0.00 2.15
3778 4080 5.492895 TGCGAAAATACCAGTTCCTATGAA 58.507 37.500 0.00 0.00 0.00 2.57
3779 4081 5.584649 TGCGAAAATACCAGTTCCTATGAAG 59.415 40.000 0.00 0.00 0.00 3.02
3780 4082 5.585047 GCGAAAATACCAGTTCCTATGAAGT 59.415 40.000 0.00 0.00 34.39 3.01
3781 4083 6.759827 GCGAAAATACCAGTTCCTATGAAGTA 59.240 38.462 0.00 0.00 32.79 2.24
3782 4084 7.441458 GCGAAAATACCAGTTCCTATGAAGTAT 59.559 37.037 0.00 0.00 32.79 2.12
3783 4085 8.765219 CGAAAATACCAGTTCCTATGAAGTATG 58.235 37.037 0.00 0.00 32.79 2.39
3784 4086 8.980481 AAAATACCAGTTCCTATGAAGTATGG 57.020 34.615 5.53 5.53 36.52 2.74
3785 4087 7.691993 AATACCAGTTCCTATGAAGTATGGT 57.308 36.000 13.30 13.30 41.90 3.55
3786 4088 7.691993 ATACCAGTTCCTATGAAGTATGGTT 57.308 36.000 13.74 4.45 40.64 3.67
3787 4089 5.745227 ACCAGTTCCTATGAAGTATGGTTG 58.255 41.667 6.46 0.00 38.74 3.77
3788 4090 5.126067 CCAGTTCCTATGAAGTATGGTTGG 58.874 45.833 0.00 0.00 32.79 3.77
3789 4091 5.339200 CCAGTTCCTATGAAGTATGGTTGGT 60.339 44.000 0.00 0.00 32.79 3.67
3790 4092 5.586243 CAGTTCCTATGAAGTATGGTTGGTG 59.414 44.000 0.00 0.00 32.79 4.17
3791 4093 5.487488 AGTTCCTATGAAGTATGGTTGGTGA 59.513 40.000 0.00 0.00 32.28 4.02
3792 4094 5.614324 TCCTATGAAGTATGGTTGGTGAG 57.386 43.478 0.00 0.00 0.00 3.51
3793 4095 4.408921 TCCTATGAAGTATGGTTGGTGAGG 59.591 45.833 0.00 0.00 0.00 3.86
3794 4096 4.164221 CCTATGAAGTATGGTTGGTGAGGT 59.836 45.833 0.00 0.00 0.00 3.85
3795 4097 3.695830 TGAAGTATGGTTGGTGAGGTC 57.304 47.619 0.00 0.00 0.00 3.85
3796 4098 2.028476 TGAAGTATGGTTGGTGAGGTCG 60.028 50.000 0.00 0.00 0.00 4.79
3797 4099 1.933021 AGTATGGTTGGTGAGGTCGA 58.067 50.000 0.00 0.00 0.00 4.20
3798 4100 1.825474 AGTATGGTTGGTGAGGTCGAG 59.175 52.381 0.00 0.00 0.00 4.04
3799 4101 1.134788 GTATGGTTGGTGAGGTCGAGG 60.135 57.143 0.00 0.00 0.00 4.63
3800 4102 0.544357 ATGGTTGGTGAGGTCGAGGA 60.544 55.000 0.00 0.00 0.00 3.71
3801 4103 0.761323 TGGTTGGTGAGGTCGAGGAA 60.761 55.000 0.00 0.00 0.00 3.36
3802 4104 0.320508 GGTTGGTGAGGTCGAGGAAC 60.321 60.000 0.00 0.00 0.00 3.62
3804 4106 1.891150 GTTGGTGAGGTCGAGGAACTA 59.109 52.381 0.00 0.00 41.55 2.24
3805 4107 2.496470 GTTGGTGAGGTCGAGGAACTAT 59.504 50.000 0.00 0.00 41.55 2.12
3806 4108 2.100197 TGGTGAGGTCGAGGAACTATG 58.900 52.381 0.00 0.00 41.55 2.23
3807 4109 2.100989 GGTGAGGTCGAGGAACTATGT 58.899 52.381 0.00 0.00 41.55 2.29
3808 4110 2.099427 GGTGAGGTCGAGGAACTATGTC 59.901 54.545 0.00 0.00 41.55 3.06
3809 4111 2.753452 GTGAGGTCGAGGAACTATGTCA 59.247 50.000 0.00 0.00 41.55 3.58
3810 4112 3.192844 GTGAGGTCGAGGAACTATGTCAA 59.807 47.826 0.00 0.00 41.55 3.18
3811 4113 3.444034 TGAGGTCGAGGAACTATGTCAAG 59.556 47.826 0.00 0.00 41.55 3.02
3812 4114 3.432378 AGGTCGAGGAACTATGTCAAGT 58.568 45.455 0.00 0.00 41.55 3.16
3813 4115 3.193691 AGGTCGAGGAACTATGTCAAGTG 59.806 47.826 0.00 0.00 41.55 3.16
3814 4116 3.192844 GGTCGAGGAACTATGTCAAGTGA 59.807 47.826 0.00 0.00 41.55 3.41
3815 4117 4.167268 GTCGAGGAACTATGTCAAGTGAC 58.833 47.826 4.43 4.43 41.55 3.67
3825 4127 1.609208 GTCAAGTGACAATGGCCACT 58.391 50.000 8.16 0.00 44.69 4.00
3826 4128 1.537202 GTCAAGTGACAATGGCCACTC 59.463 52.381 8.16 3.37 42.25 3.51
3827 4129 1.142667 TCAAGTGACAATGGCCACTCA 59.857 47.619 8.16 6.53 42.25 3.41
3828 4130 2.165167 CAAGTGACAATGGCCACTCAT 58.835 47.619 8.16 0.00 42.25 2.90
3829 4131 1.830279 AGTGACAATGGCCACTCATG 58.170 50.000 8.16 7.94 39.19 3.07
3830 4132 1.352017 AGTGACAATGGCCACTCATGA 59.648 47.619 8.16 0.00 39.19 3.07
3831 4133 2.161855 GTGACAATGGCCACTCATGAA 58.838 47.619 8.16 0.00 0.00 2.57
3832 4134 2.557924 GTGACAATGGCCACTCATGAAA 59.442 45.455 8.16 0.00 0.00 2.69
3833 4135 3.005684 GTGACAATGGCCACTCATGAAAA 59.994 43.478 8.16 0.00 0.00 2.29
3834 4136 3.640498 TGACAATGGCCACTCATGAAAAA 59.360 39.130 8.16 0.00 0.00 1.94
3872 4174 6.732531 TGAGAATCACAACATGAAGCTTAG 57.267 37.500 0.00 0.00 42.56 2.18
3873 4175 5.645067 TGAGAATCACAACATGAAGCTTAGG 59.355 40.000 0.00 0.00 42.56 2.69
3874 4176 5.809001 AGAATCACAACATGAAGCTTAGGA 58.191 37.500 0.00 0.00 41.93 2.94
3875 4177 5.645497 AGAATCACAACATGAAGCTTAGGAC 59.355 40.000 0.00 0.00 41.93 3.85
3876 4178 4.350368 TCACAACATGAAGCTTAGGACA 57.650 40.909 0.00 0.00 33.02 4.02
3877 4179 4.910195 TCACAACATGAAGCTTAGGACAT 58.090 39.130 0.00 0.00 33.02 3.06
3878 4180 4.696877 TCACAACATGAAGCTTAGGACATG 59.303 41.667 19.12 19.12 43.56 3.21
3879 4181 4.012374 ACAACATGAAGCTTAGGACATGG 58.988 43.478 22.64 12.64 42.66 3.66
3880 4182 3.287867 ACATGAAGCTTAGGACATGGG 57.712 47.619 22.64 6.33 42.66 4.00
3881 4183 2.578021 ACATGAAGCTTAGGACATGGGT 59.422 45.455 22.64 6.88 42.66 4.51
3882 4184 3.010584 ACATGAAGCTTAGGACATGGGTT 59.989 43.478 22.64 6.33 42.66 4.11
3883 4185 4.227300 ACATGAAGCTTAGGACATGGGTTA 59.773 41.667 22.64 0.00 42.66 2.85
3884 4186 5.103940 ACATGAAGCTTAGGACATGGGTTAT 60.104 40.000 22.64 5.77 42.66 1.89
3885 4187 4.780815 TGAAGCTTAGGACATGGGTTATG 58.219 43.478 0.00 0.00 42.68 1.90
3886 4188 4.473196 TGAAGCTTAGGACATGGGTTATGA 59.527 41.667 0.00 0.00 39.21 2.15
3887 4189 5.132648 TGAAGCTTAGGACATGGGTTATGAT 59.867 40.000 0.00 0.00 39.21 2.45
3888 4190 5.234466 AGCTTAGGACATGGGTTATGATC 57.766 43.478 0.00 0.00 39.21 2.92
3889 4191 4.910304 AGCTTAGGACATGGGTTATGATCT 59.090 41.667 0.00 0.00 39.21 2.75
3890 4192 4.999950 GCTTAGGACATGGGTTATGATCTG 59.000 45.833 0.00 0.00 39.21 2.90
3891 4193 5.221722 GCTTAGGACATGGGTTATGATCTGA 60.222 44.000 0.00 0.00 39.21 3.27
3892 4194 6.688922 GCTTAGGACATGGGTTATGATCTGAA 60.689 42.308 0.00 0.00 39.21 3.02
3893 4195 5.301835 AGGACATGGGTTATGATCTGAAG 57.698 43.478 0.00 0.00 39.21 3.02
3894 4196 4.103785 AGGACATGGGTTATGATCTGAAGG 59.896 45.833 0.00 0.00 39.21 3.46
3895 4197 4.103153 GGACATGGGTTATGATCTGAAGGA 59.897 45.833 0.00 0.00 39.21 3.36
3896 4198 5.397899 GGACATGGGTTATGATCTGAAGGAA 60.398 44.000 0.00 0.00 39.21 3.36
3897 4199 6.078456 ACATGGGTTATGATCTGAAGGAAA 57.922 37.500 0.00 0.00 39.21 3.13
3898 4200 6.493166 ACATGGGTTATGATCTGAAGGAAAA 58.507 36.000 0.00 0.00 39.21 2.29
3899 4201 6.953520 ACATGGGTTATGATCTGAAGGAAAAA 59.046 34.615 0.00 0.00 39.21 1.94
3921 4223 7.832503 AAAAATATGGAAATTTTCGAGCCTG 57.167 32.000 3.17 0.00 37.93 4.85
3922 4224 6.530019 AAATATGGAAATTTTCGAGCCTGT 57.470 33.333 3.17 0.00 0.00 4.00
3923 4225 3.855689 ATGGAAATTTTCGAGCCTGTG 57.144 42.857 3.17 0.00 0.00 3.66
3924 4226 2.582052 TGGAAATTTTCGAGCCTGTGT 58.418 42.857 3.17 0.00 0.00 3.72
3925 4227 2.293122 TGGAAATTTTCGAGCCTGTGTG 59.707 45.455 3.17 0.00 0.00 3.82
3926 4228 2.293399 GGAAATTTTCGAGCCTGTGTGT 59.707 45.455 3.17 0.00 0.00 3.72
3927 4229 3.243401 GGAAATTTTCGAGCCTGTGTGTT 60.243 43.478 3.17 0.00 0.00 3.32
3928 4230 3.354089 AATTTTCGAGCCTGTGTGTTG 57.646 42.857 0.00 0.00 0.00 3.33
3929 4231 0.380378 TTTTCGAGCCTGTGTGTTGC 59.620 50.000 0.00 0.00 0.00 4.17
3930 4232 0.746204 TTTCGAGCCTGTGTGTTGCA 60.746 50.000 0.00 0.00 0.00 4.08
3931 4233 0.746204 TTCGAGCCTGTGTGTTGCAA 60.746 50.000 0.00 0.00 0.00 4.08
3932 4234 1.009675 CGAGCCTGTGTGTTGCAAC 60.010 57.895 22.83 22.83 0.00 4.17
3933 4235 1.009675 GAGCCTGTGTGTTGCAACG 60.010 57.895 23.79 10.03 0.00 4.10
3934 4236 2.026014 GCCTGTGTGTTGCAACGG 59.974 61.111 23.79 18.58 0.00 4.44
3935 4237 2.770589 GCCTGTGTGTTGCAACGGT 61.771 57.895 23.79 0.00 0.00 4.83
3936 4238 1.440938 GCCTGTGTGTTGCAACGGTA 61.441 55.000 23.79 10.29 0.00 4.02
3937 4239 0.586319 CCTGTGTGTTGCAACGGTAG 59.414 55.000 23.79 17.56 0.00 3.18
3938 4240 1.577468 CTGTGTGTTGCAACGGTAGA 58.423 50.000 23.79 10.49 0.00 2.59
3939 4241 1.526887 CTGTGTGTTGCAACGGTAGAG 59.473 52.381 23.79 15.57 0.00 2.43
3940 4242 1.137282 TGTGTGTTGCAACGGTAGAGA 59.863 47.619 23.79 2.31 0.00 3.10
3941 4243 2.206750 GTGTGTTGCAACGGTAGAGAA 58.793 47.619 23.79 1.33 0.00 2.87
3942 4244 2.610374 GTGTGTTGCAACGGTAGAGAAA 59.390 45.455 23.79 0.57 0.00 2.52
3943 4245 3.064271 GTGTGTTGCAACGGTAGAGAAAA 59.936 43.478 23.79 0.00 0.00 2.29
3944 4246 3.690139 TGTGTTGCAACGGTAGAGAAAAA 59.310 39.130 23.79 0.00 0.00 1.94
3945 4247 4.336993 TGTGTTGCAACGGTAGAGAAAAAT 59.663 37.500 23.79 0.00 0.00 1.82
3946 4248 5.163602 TGTGTTGCAACGGTAGAGAAAAATT 60.164 36.000 23.79 0.00 0.00 1.82
3947 4249 5.173131 GTGTTGCAACGGTAGAGAAAAATTG 59.827 40.000 23.79 0.00 0.00 2.32
3948 4250 4.497473 TGCAACGGTAGAGAAAAATTGG 57.503 40.909 0.00 0.00 0.00 3.16
3949 4251 3.242518 GCAACGGTAGAGAAAAATTGGC 58.757 45.455 0.00 0.00 0.00 4.52
3950 4252 3.833442 CAACGGTAGAGAAAAATTGGCC 58.167 45.455 0.00 0.00 0.00 5.36
3951 4253 2.443416 ACGGTAGAGAAAAATTGGCCC 58.557 47.619 0.00 0.00 0.00 5.80
3952 4254 1.400494 CGGTAGAGAAAAATTGGCCCG 59.600 52.381 0.00 0.00 0.00 6.13
3953 4255 2.443416 GGTAGAGAAAAATTGGCCCGT 58.557 47.619 0.00 0.00 0.00 5.28
3954 4256 3.613030 GGTAGAGAAAAATTGGCCCGTA 58.387 45.455 0.00 0.00 0.00 4.02
3955 4257 4.204799 GGTAGAGAAAAATTGGCCCGTAT 58.795 43.478 0.00 0.00 0.00 3.06
3956 4258 4.643334 GGTAGAGAAAAATTGGCCCGTATT 59.357 41.667 0.00 0.00 0.00 1.89
3957 4259 5.824097 GGTAGAGAAAAATTGGCCCGTATTA 59.176 40.000 0.00 0.00 0.00 0.98
3958 4260 6.319405 GGTAGAGAAAAATTGGCCCGTATTAA 59.681 38.462 0.00 0.00 0.00 1.40
3959 4261 6.451064 AGAGAAAAATTGGCCCGTATTAAG 57.549 37.500 0.00 0.00 0.00 1.85
3960 4262 6.184789 AGAGAAAAATTGGCCCGTATTAAGA 58.815 36.000 0.00 0.00 0.00 2.10
3961 4263 6.833933 AGAGAAAAATTGGCCCGTATTAAGAT 59.166 34.615 0.00 0.00 0.00 2.40
3962 4264 7.342026 AGAGAAAAATTGGCCCGTATTAAGATT 59.658 33.333 0.00 0.00 0.00 2.40
3963 4265 8.528044 AGAAAAATTGGCCCGTATTAAGATTA 57.472 30.769 0.00 0.00 0.00 1.75
3964 4266 8.973182 AGAAAAATTGGCCCGTATTAAGATTAA 58.027 29.630 0.00 0.00 0.00 1.40
3965 4267 9.589111 GAAAAATTGGCCCGTATTAAGATTAAA 57.411 29.630 0.00 0.00 0.00 1.52
3997 4299 8.938906 ACATCCACAATTCATGAAAAATTTAGC 58.061 29.630 13.09 0.00 0.00 3.09
3998 4300 9.158233 CATCCACAATTCATGAAAAATTTAGCT 57.842 29.630 13.09 0.00 0.00 3.32
3999 4301 9.729281 ATCCACAATTCATGAAAAATTTAGCTT 57.271 25.926 13.09 0.00 0.00 3.74
4000 4302 9.558396 TCCACAATTCATGAAAAATTTAGCTTT 57.442 25.926 13.09 0.00 0.00 3.51
4036 4338 9.500785 TGTAGAAACATGAATGAACTATTGTCA 57.499 29.630 0.00 0.00 0.00 3.58
4039 4341 8.849168 AGAAACATGAATGAACTATTGTCAACA 58.151 29.630 0.00 0.00 0.00 3.33
4040 4342 9.462174 GAAACATGAATGAACTATTGTCAACAA 57.538 29.630 0.00 0.00 40.51 2.83
4042 4344 9.630098 AACATGAATGAACTATTGTCAACAATC 57.370 29.630 11.45 0.11 44.67 2.67
4043 4345 8.795513 ACATGAATGAACTATTGTCAACAATCA 58.204 29.630 11.45 5.64 44.67 2.57
4044 4346 9.797556 CATGAATGAACTATTGTCAACAATCAT 57.202 29.630 11.45 7.57 44.67 2.45
4046 4348 9.234827 TGAATGAACTATTGTCAACAATCATCT 57.765 29.630 11.45 2.93 44.67 2.90
4048 4350 9.850628 AATGAACTATTGTCAACAATCATCTTG 57.149 29.630 11.45 1.16 44.67 3.02
4049 4351 8.394971 TGAACTATTGTCAACAATCATCTTGT 57.605 30.769 11.45 1.67 44.67 3.16
4050 4352 8.849168 TGAACTATTGTCAACAATCATCTTGTT 58.151 29.630 11.45 8.54 44.67 2.83
4065 4367 9.880157 AATCATCTTGTTATTTGATTTTGAGGG 57.120 29.630 0.00 0.00 35.79 4.30
4066 4368 8.648698 TCATCTTGTTATTTGATTTTGAGGGA 57.351 30.769 0.00 0.00 0.00 4.20
4067 4369 9.258629 TCATCTTGTTATTTGATTTTGAGGGAT 57.741 29.630 0.00 0.00 0.00 3.85
4068 4370 9.880157 CATCTTGTTATTTGATTTTGAGGGATT 57.120 29.630 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.296322 TGCGAATTCACATTGTTTCCC 57.704 42.857 6.22 0.00 0.00 3.97
69 70 4.737054 CAAAACCCCGAATGATCTTTCAG 58.263 43.478 18.39 9.23 34.73 3.02
77 78 2.524306 AGATTGCAAAACCCCGAATGA 58.476 42.857 1.71 0.00 0.00 2.57
114 115 2.181975 CCCAAAAATGAGCAGGACCAT 58.818 47.619 0.00 0.00 0.00 3.55
142 143 5.047802 ACATGTCATGATGTTTTTCAGGGAC 60.048 40.000 19.77 0.00 32.38 4.46
146 147 6.698329 ACACAACATGTCATGATGTTTTTCAG 59.302 34.615 22.17 14.02 42.63 3.02
196 198 2.768527 CCAAGTCCATGCCTCTCTTAGA 59.231 50.000 0.00 0.00 0.00 2.10
197 199 2.768527 TCCAAGTCCATGCCTCTCTTAG 59.231 50.000 0.00 0.00 0.00 2.18
199 201 1.558756 CTCCAAGTCCATGCCTCTCTT 59.441 52.381 0.00 0.00 0.00 2.85
211 214 4.500603 TGTCGTAGAAGAACTCCAAGTC 57.499 45.455 0.00 0.00 39.69 3.01
253 256 2.092049 TGCGATTAGGGTCTCTACCTGA 60.092 50.000 0.00 0.00 45.95 3.86
257 260 5.620429 GCTCTAATGCGATTAGGGTCTCTAC 60.620 48.000 13.74 0.00 43.68 2.59
270 273 4.820897 TCTGAAGAAAAGCTCTAATGCGA 58.179 39.130 0.00 0.00 38.13 5.10
317 320 1.534595 CCTGAAGCTGAAAGTGAGTGC 59.465 52.381 0.00 0.00 35.30 4.40
321 324 2.329267 TCCTCCTGAAGCTGAAAGTGA 58.671 47.619 0.00 0.00 35.30 3.41
546 558 7.401955 TTTGACACATATGCCACATATTCAA 57.598 32.000 1.58 8.22 0.00 2.69
624 636 3.029320 ACAGTTTCGTTATGCGGTGTA 57.971 42.857 0.00 0.00 41.72 2.90
635 647 9.763465 CGTGGATATTTTATTTTACAGTTTCGT 57.237 29.630 0.00 0.00 0.00 3.85
685 697 0.249911 GGCCGAATAGACTCCGCATT 60.250 55.000 0.00 0.00 0.00 3.56
692 704 1.367840 GCATCCGGCCGAATAGACT 59.632 57.895 30.73 2.57 36.11 3.24
713 725 0.521735 AAAAGATTTCACGAGCCGGC 59.478 50.000 21.89 21.89 0.00 6.13
714 726 2.414161 GGAAAAAGATTTCACGAGCCGG 60.414 50.000 0.00 0.00 45.53 6.13
716 728 2.225727 ACGGAAAAAGATTTCACGAGCC 59.774 45.455 14.52 0.00 45.53 4.70
718 730 7.589954 ACAATTTACGGAAAAAGATTTCACGAG 59.410 33.333 0.00 0.00 45.53 4.18
719 731 7.419204 ACAATTTACGGAAAAAGATTTCACGA 58.581 30.769 0.00 0.19 45.53 4.35
723 735 9.983431 CGTTTACAATTTACGGAAAAAGATTTC 57.017 29.630 0.00 0.00 43.46 2.17
726 740 8.562052 ACTCGTTTACAATTTACGGAAAAAGAT 58.438 29.630 0.00 0.00 36.06 2.40
728 742 8.551122 AACTCGTTTACAATTTACGGAAAAAG 57.449 30.769 0.00 0.00 36.06 2.27
762 776 1.934849 GCAGACATGTATATCGCGCCA 60.935 52.381 0.00 0.00 0.00 5.69
767 781 3.990469 GTCCCTTGCAGACATGTATATCG 59.010 47.826 0.00 0.00 34.27 2.92
768 782 3.990469 CGTCCCTTGCAGACATGTATATC 59.010 47.826 0.00 0.00 33.70 1.63
772 786 0.249120 CCGTCCCTTGCAGACATGTA 59.751 55.000 0.00 0.00 33.70 2.29
774 788 2.401766 GCCGTCCCTTGCAGACATG 61.402 63.158 5.54 0.00 33.70 3.21
775 789 2.045926 GCCGTCCCTTGCAGACAT 60.046 61.111 5.54 0.00 33.70 3.06
776 790 2.616797 TTTGCCGTCCCTTGCAGACA 62.617 55.000 5.54 0.00 38.95 3.41
777 791 1.244019 ATTTGCCGTCCCTTGCAGAC 61.244 55.000 0.00 0.00 38.95 3.51
778 792 0.960364 GATTTGCCGTCCCTTGCAGA 60.960 55.000 0.00 0.00 38.95 4.26
779 793 1.508088 GATTTGCCGTCCCTTGCAG 59.492 57.895 0.00 0.00 38.95 4.41
780 794 1.976474 GGATTTGCCGTCCCTTGCA 60.976 57.895 0.00 0.00 35.27 4.08
781 795 1.678970 AGGATTTGCCGTCCCTTGC 60.679 57.895 0.00 0.00 43.43 4.01
782 796 2.183409 CAGGATTTGCCGTCCCTTG 58.817 57.895 0.00 0.00 43.43 3.61
819 833 2.544267 CCAAGACAGAAACTCGGTGTTC 59.456 50.000 0.00 0.00 38.03 3.18
908 932 0.108138 ATTCGTGGAGGAAAGCGAGG 60.108 55.000 0.00 0.00 34.78 4.63
971 995 2.497675 CTCCCTCAAATCTGAACCTCGA 59.502 50.000 0.00 0.00 0.00 4.04
1521 1545 5.747197 CAGCAAGGAATTCATTATCTGCAAC 59.253 40.000 14.75 0.00 0.00 4.17
1613 1637 1.270147 GGATGGAGGTACGTGGTATGC 60.270 57.143 0.00 0.00 0.00 3.14
1706 1730 2.401583 TATGGGTGTGCAGACATGTC 57.598 50.000 18.47 18.47 33.63 3.06
1716 1740 2.566724 AGTTGGGCAAAATATGGGTGTG 59.433 45.455 0.00 0.00 0.00 3.82
1717 1741 2.901291 AGTTGGGCAAAATATGGGTGT 58.099 42.857 0.00 0.00 0.00 4.16
2013 2037 1.603455 CGGGTGGCATGGAAGTGTT 60.603 57.895 0.00 0.00 0.00 3.32
2014 2038 2.034066 CGGGTGGCATGGAAGTGT 59.966 61.111 0.00 0.00 0.00 3.55
2015 2039 0.893270 TTTCGGGTGGCATGGAAGTG 60.893 55.000 0.00 0.00 0.00 3.16
2016 2040 0.039618 ATTTCGGGTGGCATGGAAGT 59.960 50.000 0.00 0.00 0.00 3.01
2018 2042 0.038890 TGATTTCGGGTGGCATGGAA 59.961 50.000 0.00 0.00 0.00 3.53
2079 2116 8.930527 TGGGAGAATAGATAAAATTTAGACCGA 58.069 33.333 0.00 0.00 0.00 4.69
2098 2135 1.564348 GGATAGTTGGGCTTGGGAGAA 59.436 52.381 0.00 0.00 0.00 2.87
2218 2255 8.576442 GGGATTTGTGGTAAATGATAAGTATGG 58.424 37.037 0.00 0.00 0.00 2.74
2294 2331 7.387948 CACTATCAAGTTTTAGTAAGCTGTGGT 59.612 37.037 0.00 0.00 31.97 4.16
2407 2444 8.254508 AGACTAGGATTTGACATGTCTTAGTTC 58.745 37.037 25.55 14.52 35.66 3.01
2426 2463 6.338146 TCGTCATCCACAAATTTAGACTAGG 58.662 40.000 0.00 0.00 0.00 3.02
2481 2518 9.947669 TTAGATTAGAGTTTGAACTATAGCGAC 57.052 33.333 0.00 0.00 39.88 5.19
2529 2566 3.683340 GGTTATGGACGAAACAGGAGAAC 59.317 47.826 0.00 0.00 0.00 3.01
2548 2585 9.643693 CATCTAGTTAAGCATCAAAAATTGGTT 57.356 29.630 0.00 0.00 37.35 3.67
2766 2804 1.853963 GTAGGCTCTCTTGTCCTCCA 58.146 55.000 0.00 0.00 0.00 3.86
2788 2826 2.526304 TAGTATGTCGCCCATGAAGC 57.474 50.000 0.00 0.00 34.86 3.86
3084 3122 0.039165 CCTTTCCGGCAACTTTCTGC 60.039 55.000 0.00 0.00 41.85 4.26
3157 3195 1.467190 AAACCCATCCTCCCACCCA 60.467 57.895 0.00 0.00 0.00 4.51
3161 3199 0.856982 ACAACAAACCCATCCTCCCA 59.143 50.000 0.00 0.00 0.00 4.37
3164 3202 2.558359 CAGGAACAACAAACCCATCCTC 59.442 50.000 0.00 0.00 35.16 3.71
3232 3271 6.910433 GTGCCGAAAATAATACACCTTACATG 59.090 38.462 0.00 0.00 0.00 3.21
3238 3277 4.394920 CACAGTGCCGAAAATAATACACCT 59.605 41.667 0.00 0.00 0.00 4.00
3240 3279 5.321516 GTCACAGTGCCGAAAATAATACAC 58.678 41.667 0.00 0.00 0.00 2.90
3241 3280 4.393680 GGTCACAGTGCCGAAAATAATACA 59.606 41.667 0.00 0.00 0.00 2.29
3258 3528 6.007076 TCTATAATTTTGTGCCTTGGTCACA 58.993 36.000 11.04 11.04 42.10 3.58
3263 3533 6.753279 CACATGTCTATAATTTTGTGCCTTGG 59.247 38.462 0.00 0.00 0.00 3.61
3290 3560 2.570415 TGCCAAGGGTAATTTCGTCA 57.430 45.000 0.00 0.00 0.00 4.35
3301 3571 2.636647 ACCAACAAATTTGCCAAGGG 57.363 45.000 18.12 13.71 0.00 3.95
3303 3573 4.511082 CCACTAACCAACAAATTTGCCAAG 59.489 41.667 18.12 9.41 0.00 3.61
3325 3595 3.873952 CCTGTCTAGCTGATTTACTTGCC 59.126 47.826 0.00 0.00 0.00 4.52
3326 3596 3.873952 CCCTGTCTAGCTGATTTACTTGC 59.126 47.826 0.00 0.00 0.00 4.01
3338 3608 5.862678 ATCTCTTACTTTCCCTGTCTAGC 57.137 43.478 0.00 0.00 0.00 3.42
3339 3609 8.792633 CATCTATCTCTTACTTTCCCTGTCTAG 58.207 40.741 0.00 0.00 0.00 2.43
3345 3615 6.814954 TTGCATCTATCTCTTACTTTCCCT 57.185 37.500 0.00 0.00 0.00 4.20
3346 3616 7.716998 TCAATTGCATCTATCTCTTACTTTCCC 59.283 37.037 0.00 0.00 0.00 3.97
3352 3622 7.278646 TGTGTGTCAATTGCATCTATCTCTTAC 59.721 37.037 0.00 0.00 0.00 2.34
3356 3626 6.615264 ATGTGTGTCAATTGCATCTATCTC 57.385 37.500 0.00 0.00 0.00 2.75
3362 3632 8.915871 AAAAGTATATGTGTGTCAATTGCATC 57.084 30.769 0.00 1.84 0.00 3.91
3371 3641 9.118236 GCAAAAGAAGAAAAGTATATGTGTGTC 57.882 33.333 0.00 0.00 0.00 3.67
3372 3642 8.850156 AGCAAAAGAAGAAAAGTATATGTGTGT 58.150 29.630 0.00 0.00 0.00 3.72
3379 3649 9.787435 TCCTTGTAGCAAAAGAAGAAAAGTATA 57.213 29.630 0.00 0.00 0.00 1.47
3380 3650 8.691661 TCCTTGTAGCAAAAGAAGAAAAGTAT 57.308 30.769 0.00 0.00 0.00 2.12
3381 3651 7.990886 TCTCCTTGTAGCAAAAGAAGAAAAGTA 59.009 33.333 0.00 0.00 0.00 2.24
3382 3652 6.828785 TCTCCTTGTAGCAAAAGAAGAAAAGT 59.171 34.615 0.00 0.00 0.00 2.66
3383 3653 7.227512 TCTCTCCTTGTAGCAAAAGAAGAAAAG 59.772 37.037 0.00 0.00 0.00 2.27
3384 3654 7.054124 TCTCTCCTTGTAGCAAAAGAAGAAAA 58.946 34.615 0.00 0.00 0.00 2.29
3385 3655 6.591935 TCTCTCCTTGTAGCAAAAGAAGAAA 58.408 36.000 0.00 0.00 0.00 2.52
3386 3656 6.174720 TCTCTCCTTGTAGCAAAAGAAGAA 57.825 37.500 0.00 0.00 0.00 2.52
3387 3657 5.808366 TCTCTCCTTGTAGCAAAAGAAGA 57.192 39.130 0.00 0.00 0.00 2.87
3388 3658 7.099764 TGTATCTCTCCTTGTAGCAAAAGAAG 58.900 38.462 0.00 0.00 0.00 2.85
3389 3659 7.004555 TGTATCTCTCCTTGTAGCAAAAGAA 57.995 36.000 0.00 0.00 0.00 2.52
3390 3660 6.605471 TGTATCTCTCCTTGTAGCAAAAGA 57.395 37.500 0.00 0.00 0.00 2.52
3391 3661 7.981789 TGTATGTATCTCTCCTTGTAGCAAAAG 59.018 37.037 0.00 0.00 0.00 2.27
3392 3662 7.847096 TGTATGTATCTCTCCTTGTAGCAAAA 58.153 34.615 0.00 0.00 0.00 2.44
3393 3663 7.418337 TGTATGTATCTCTCCTTGTAGCAAA 57.582 36.000 0.00 0.00 0.00 3.68
3394 3664 7.418337 TTGTATGTATCTCTCCTTGTAGCAA 57.582 36.000 0.00 0.00 0.00 3.91
3395 3665 7.287696 TGATTGTATGTATCTCTCCTTGTAGCA 59.712 37.037 0.00 0.00 0.00 3.49
3396 3666 7.661968 TGATTGTATGTATCTCTCCTTGTAGC 58.338 38.462 0.00 0.00 0.00 3.58
3397 3667 8.303156 CCTGATTGTATGTATCTCTCCTTGTAG 58.697 40.741 0.00 0.00 0.00 2.74
3398 3668 8.004801 TCCTGATTGTATGTATCTCTCCTTGTA 58.995 37.037 0.00 0.00 0.00 2.41
3399 3669 6.841229 TCCTGATTGTATGTATCTCTCCTTGT 59.159 38.462 0.00 0.00 0.00 3.16
3400 3670 7.232330 TCTCCTGATTGTATGTATCTCTCCTTG 59.768 40.741 0.00 0.00 0.00 3.61
3401 3671 7.301420 TCTCCTGATTGTATGTATCTCTCCTT 58.699 38.462 0.00 0.00 0.00 3.36
3402 3672 6.857848 TCTCCTGATTGTATGTATCTCTCCT 58.142 40.000 0.00 0.00 0.00 3.69
3403 3673 6.945435 TCTCTCCTGATTGTATGTATCTCTCC 59.055 42.308 0.00 0.00 0.00 3.71
3404 3674 7.882791 TCTCTCTCCTGATTGTATGTATCTCTC 59.117 40.741 0.00 0.00 0.00 3.20
3405 3675 7.754624 TCTCTCTCCTGATTGTATGTATCTCT 58.245 38.462 0.00 0.00 0.00 3.10
3406 3676 7.994425 TCTCTCTCCTGATTGTATGTATCTC 57.006 40.000 0.00 0.00 0.00 2.75
3407 3677 9.461312 GTATCTCTCTCCTGATTGTATGTATCT 57.539 37.037 0.00 0.00 0.00 1.98
3408 3678 9.461312 AGTATCTCTCTCCTGATTGTATGTATC 57.539 37.037 0.00 0.00 0.00 2.24
3409 3679 9.821240 AAGTATCTCTCTCCTGATTGTATGTAT 57.179 33.333 0.00 0.00 0.00 2.29
3410 3680 9.647918 AAAGTATCTCTCTCCTGATTGTATGTA 57.352 33.333 0.00 0.00 0.00 2.29
3411 3681 8.546083 AAAGTATCTCTCTCCTGATTGTATGT 57.454 34.615 0.00 0.00 0.00 2.29
3412 3682 8.087750 GGAAAGTATCTCTCTCCTGATTGTATG 58.912 40.741 0.00 0.00 0.00 2.39
3413 3683 7.234577 GGGAAAGTATCTCTCTCCTGATTGTAT 59.765 40.741 0.00 0.00 0.00 2.29
3414 3684 6.551601 GGGAAAGTATCTCTCTCCTGATTGTA 59.448 42.308 0.00 0.00 0.00 2.41
3415 3685 5.365314 GGGAAAGTATCTCTCTCCTGATTGT 59.635 44.000 0.00 0.00 0.00 2.71
3416 3686 5.602145 AGGGAAAGTATCTCTCTCCTGATTG 59.398 44.000 0.00 0.00 31.13 2.67
3417 3687 5.787327 AGGGAAAGTATCTCTCTCCTGATT 58.213 41.667 0.00 0.00 31.13 2.57
3418 3688 5.417170 AGGGAAAGTATCTCTCTCCTGAT 57.583 43.478 0.00 0.00 31.13 2.90
3419 3689 4.890499 AGGGAAAGTATCTCTCTCCTGA 57.110 45.455 0.00 0.00 31.13 3.86
3420 3690 5.948742 AAAGGGAAAGTATCTCTCTCCTG 57.051 43.478 0.00 0.00 38.17 3.86
3421 3691 5.788014 ACAAAAGGGAAAGTATCTCTCTCCT 59.212 40.000 0.00 0.00 38.17 3.69
3422 3692 6.056090 ACAAAAGGGAAAGTATCTCTCTCC 57.944 41.667 0.00 0.00 38.17 3.71
3423 3693 5.808030 CGACAAAAGGGAAAGTATCTCTCTC 59.192 44.000 0.00 0.00 38.17 3.20
3424 3694 5.480772 TCGACAAAAGGGAAAGTATCTCTCT 59.519 40.000 0.00 0.00 38.17 3.10
3425 3695 5.721232 TCGACAAAAGGGAAAGTATCTCTC 58.279 41.667 0.00 0.00 38.17 3.20
3426 3696 5.337652 CCTCGACAAAAGGGAAAGTATCTCT 60.338 44.000 0.00 0.00 42.20 3.10
3427 3697 4.870991 CCTCGACAAAAGGGAAAGTATCTC 59.129 45.833 0.00 0.00 0.00 2.75
3428 3698 4.530946 TCCTCGACAAAAGGGAAAGTATCT 59.469 41.667 0.00 0.00 34.46 1.98
3429 3699 4.828829 TCCTCGACAAAAGGGAAAGTATC 58.171 43.478 0.00 0.00 34.46 2.24
3430 3700 4.903045 TCCTCGACAAAAGGGAAAGTAT 57.097 40.909 0.00 0.00 34.46 2.12
3431 3701 4.693042 TTCCTCGACAAAAGGGAAAGTA 57.307 40.909 0.00 0.00 35.27 2.24
3432 3702 3.570912 TTCCTCGACAAAAGGGAAAGT 57.429 42.857 0.00 0.00 35.27 2.66
3433 3703 5.472137 TGTTATTCCTCGACAAAAGGGAAAG 59.528 40.000 5.75 0.00 40.57 2.62
3434 3704 5.378332 TGTTATTCCTCGACAAAAGGGAAA 58.622 37.500 5.75 0.00 40.57 3.13
3435 3705 4.975631 TGTTATTCCTCGACAAAAGGGAA 58.024 39.130 4.26 4.26 41.29 3.97
3436 3706 4.627284 TGTTATTCCTCGACAAAAGGGA 57.373 40.909 0.00 0.00 34.46 4.20
3437 3707 4.156008 CCTTGTTATTCCTCGACAAAAGGG 59.844 45.833 0.00 0.00 33.37 3.95
3438 3708 4.156008 CCCTTGTTATTCCTCGACAAAAGG 59.844 45.833 0.00 0.00 33.37 3.11
3439 3709 5.001232 TCCCTTGTTATTCCTCGACAAAAG 58.999 41.667 0.00 0.00 33.37 2.27
3440 3710 4.975631 TCCCTTGTTATTCCTCGACAAAA 58.024 39.130 0.00 0.00 33.37 2.44
3441 3711 4.041198 ACTCCCTTGTTATTCCTCGACAAA 59.959 41.667 0.00 0.00 33.37 2.83
3442 3712 3.581332 ACTCCCTTGTTATTCCTCGACAA 59.419 43.478 0.00 0.00 0.00 3.18
3443 3713 3.170717 ACTCCCTTGTTATTCCTCGACA 58.829 45.455 0.00 0.00 0.00 4.35
3444 3714 3.889520 ACTCCCTTGTTATTCCTCGAC 57.110 47.619 0.00 0.00 0.00 4.20
3445 3715 5.659525 TCATAACTCCCTTGTTATTCCTCGA 59.340 40.000 0.00 0.00 40.06 4.04
3446 3716 5.914033 TCATAACTCCCTTGTTATTCCTCG 58.086 41.667 0.00 0.00 40.06 4.63
3447 3717 7.125792 TCTCATAACTCCCTTGTTATTCCTC 57.874 40.000 0.00 0.00 40.06 3.71
3515 3798 9.959721 ACAGTTCTCACATATAAGGTGTATTTT 57.040 29.630 7.52 0.00 37.52 1.82
3593 3894 9.892130 TCTTAGAAGCATATAGTCGATCTGATA 57.108 33.333 0.00 0.00 0.00 2.15
3664 3966 0.949397 CATGAGGCACATTCATCCGG 59.051 55.000 0.00 0.00 37.07 5.14
3701 4003 4.927267 ACGATCTCCTCTCCTAGATGAT 57.073 45.455 0.00 0.00 32.60 2.45
3720 4022 8.943002 AGTAAATACCAAAGATGAAAACCTACG 58.057 33.333 0.00 0.00 0.00 3.51
3723 4025 8.957466 GCTAGTAAATACCAAAGATGAAAACCT 58.043 33.333 0.00 0.00 0.00 3.50
3724 4026 8.736244 TGCTAGTAAATACCAAAGATGAAAACC 58.264 33.333 0.00 0.00 0.00 3.27
3725 4027 9.556030 GTGCTAGTAAATACCAAAGATGAAAAC 57.444 33.333 0.00 0.00 0.00 2.43
3726 4028 9.290988 TGTGCTAGTAAATACCAAAGATGAAAA 57.709 29.630 0.00 0.00 0.00 2.29
3727 4029 8.856153 TGTGCTAGTAAATACCAAAGATGAAA 57.144 30.769 0.00 0.00 0.00 2.69
3728 4030 8.856153 TTGTGCTAGTAAATACCAAAGATGAA 57.144 30.769 0.00 0.00 0.00 2.57
3729 4031 8.856153 TTTGTGCTAGTAAATACCAAAGATGA 57.144 30.769 0.00 0.00 0.00 2.92
3730 4032 9.507280 CATTTGTGCTAGTAAATACCAAAGATG 57.493 33.333 0.00 0.00 0.00 2.90
3731 4033 8.190784 GCATTTGTGCTAGTAAATACCAAAGAT 58.809 33.333 0.00 0.00 0.00 2.40
3732 4034 7.535139 GCATTTGTGCTAGTAAATACCAAAGA 58.465 34.615 0.00 0.00 0.00 2.52
3733 4035 6.468956 CGCATTTGTGCTAGTAAATACCAAAG 59.531 38.462 0.00 0.00 0.00 2.77
3734 4036 6.149640 TCGCATTTGTGCTAGTAAATACCAAA 59.850 34.615 0.00 0.00 0.00 3.28
3735 4037 5.644206 TCGCATTTGTGCTAGTAAATACCAA 59.356 36.000 0.00 0.00 0.00 3.67
3736 4038 5.179533 TCGCATTTGTGCTAGTAAATACCA 58.820 37.500 0.00 0.00 0.00 3.25
3737 4039 5.728351 TCGCATTTGTGCTAGTAAATACC 57.272 39.130 0.00 0.00 0.00 2.73
3738 4040 8.614994 ATTTTCGCATTTGTGCTAGTAAATAC 57.385 30.769 0.00 0.00 0.00 1.89
3739 4041 9.710979 GTATTTTCGCATTTGTGCTAGTAAATA 57.289 29.630 0.00 0.00 0.00 1.40
3740 4042 7.700656 GGTATTTTCGCATTTGTGCTAGTAAAT 59.299 33.333 0.00 0.00 0.00 1.40
3741 4043 7.024768 GGTATTTTCGCATTTGTGCTAGTAAA 58.975 34.615 0.00 0.00 0.00 2.01
3742 4044 6.149640 TGGTATTTTCGCATTTGTGCTAGTAA 59.850 34.615 0.00 0.00 0.00 2.24
3743 4045 5.644206 TGGTATTTTCGCATTTGTGCTAGTA 59.356 36.000 0.00 0.00 0.00 1.82
3744 4046 4.457603 TGGTATTTTCGCATTTGTGCTAGT 59.542 37.500 0.00 0.00 0.00 2.57
3745 4047 4.980590 TGGTATTTTCGCATTTGTGCTAG 58.019 39.130 0.00 0.00 0.00 3.42
3746 4048 4.457603 ACTGGTATTTTCGCATTTGTGCTA 59.542 37.500 0.00 0.00 0.00 3.49
3747 4049 3.255642 ACTGGTATTTTCGCATTTGTGCT 59.744 39.130 0.00 0.00 0.00 4.40
3748 4050 3.574614 ACTGGTATTTTCGCATTTGTGC 58.425 40.909 0.00 0.00 0.00 4.57
3749 4051 4.621034 GGAACTGGTATTTTCGCATTTGTG 59.379 41.667 0.00 0.00 0.00 3.33
3750 4052 4.522789 AGGAACTGGTATTTTCGCATTTGT 59.477 37.500 0.00 0.00 37.18 2.83
3751 4053 5.059404 AGGAACTGGTATTTTCGCATTTG 57.941 39.130 0.00 0.00 37.18 2.32
3752 4054 6.601613 TCATAGGAACTGGTATTTTCGCATTT 59.398 34.615 0.00 0.00 41.52 2.32
3753 4055 6.119536 TCATAGGAACTGGTATTTTCGCATT 58.880 36.000 0.00 0.00 41.52 3.56
3754 4056 5.680619 TCATAGGAACTGGTATTTTCGCAT 58.319 37.500 0.00 0.00 41.52 4.73
3755 4057 5.092554 TCATAGGAACTGGTATTTTCGCA 57.907 39.130 0.00 0.00 41.52 5.10
3756 4058 5.585047 ACTTCATAGGAACTGGTATTTTCGC 59.415 40.000 0.00 0.00 41.52 4.70
3757 4059 8.765219 CATACTTCATAGGAACTGGTATTTTCG 58.235 37.037 0.00 0.00 41.52 3.46
3758 4060 9.057089 CCATACTTCATAGGAACTGGTATTTTC 57.943 37.037 0.00 0.00 41.52 2.29
3759 4061 8.557450 ACCATACTTCATAGGAACTGGTATTTT 58.443 33.333 10.82 0.00 41.52 1.82
3760 4062 8.102484 ACCATACTTCATAGGAACTGGTATTT 57.898 34.615 10.82 0.00 41.52 1.40
3761 4063 7.691993 ACCATACTTCATAGGAACTGGTATT 57.308 36.000 10.82 0.00 41.52 1.89
3762 4064 7.420214 CCAACCATACTTCATAGGAACTGGTAT 60.420 40.741 12.22 5.18 41.52 2.73
3763 4065 6.126883 CCAACCATACTTCATAGGAACTGGTA 60.127 42.308 12.22 3.36 41.52 3.25
3764 4066 5.339200 CCAACCATACTTCATAGGAACTGGT 60.339 44.000 7.93 7.93 41.52 4.00
3765 4067 5.126067 CCAACCATACTTCATAGGAACTGG 58.874 45.833 6.95 6.95 41.52 4.00
3766 4068 5.586243 CACCAACCATACTTCATAGGAACTG 59.414 44.000 0.00 0.00 41.52 3.16
3767 4069 5.487488 TCACCAACCATACTTCATAGGAACT 59.513 40.000 0.00 0.00 46.37 3.01
3768 4070 5.741011 TCACCAACCATACTTCATAGGAAC 58.259 41.667 0.00 0.00 0.00 3.62
3769 4071 5.104527 CCTCACCAACCATACTTCATAGGAA 60.105 44.000 0.00 0.00 0.00 3.36
3770 4072 4.408921 CCTCACCAACCATACTTCATAGGA 59.591 45.833 0.00 0.00 0.00 2.94
3771 4073 4.164221 ACCTCACCAACCATACTTCATAGG 59.836 45.833 0.00 0.00 0.00 2.57
3772 4074 5.359194 ACCTCACCAACCATACTTCATAG 57.641 43.478 0.00 0.00 0.00 2.23
3773 4075 4.142026 CGACCTCACCAACCATACTTCATA 60.142 45.833 0.00 0.00 0.00 2.15
3774 4076 3.369471 CGACCTCACCAACCATACTTCAT 60.369 47.826 0.00 0.00 0.00 2.57
3775 4077 2.028476 CGACCTCACCAACCATACTTCA 60.028 50.000 0.00 0.00 0.00 3.02
3776 4078 2.232941 TCGACCTCACCAACCATACTTC 59.767 50.000 0.00 0.00 0.00 3.01
3777 4079 2.233922 CTCGACCTCACCAACCATACTT 59.766 50.000 0.00 0.00 0.00 2.24
3778 4080 1.825474 CTCGACCTCACCAACCATACT 59.175 52.381 0.00 0.00 0.00 2.12
3779 4081 1.134788 CCTCGACCTCACCAACCATAC 60.135 57.143 0.00 0.00 0.00 2.39
3780 4082 1.191535 CCTCGACCTCACCAACCATA 58.808 55.000 0.00 0.00 0.00 2.74
3781 4083 0.544357 TCCTCGACCTCACCAACCAT 60.544 55.000 0.00 0.00 0.00 3.55
3782 4084 0.761323 TTCCTCGACCTCACCAACCA 60.761 55.000 0.00 0.00 0.00 3.67
3783 4085 0.320508 GTTCCTCGACCTCACCAACC 60.321 60.000 0.00 0.00 0.00 3.77
3784 4086 0.680061 AGTTCCTCGACCTCACCAAC 59.320 55.000 0.00 0.00 0.00 3.77
3785 4087 2.297698 TAGTTCCTCGACCTCACCAA 57.702 50.000 0.00 0.00 0.00 3.67
3786 4088 2.100197 CATAGTTCCTCGACCTCACCA 58.900 52.381 0.00 0.00 0.00 4.17
3787 4089 2.099427 GACATAGTTCCTCGACCTCACC 59.901 54.545 0.00 0.00 0.00 4.02
3788 4090 2.753452 TGACATAGTTCCTCGACCTCAC 59.247 50.000 0.00 0.00 0.00 3.51
3789 4091 3.081710 TGACATAGTTCCTCGACCTCA 57.918 47.619 0.00 0.00 0.00 3.86
3790 4092 3.444388 ACTTGACATAGTTCCTCGACCTC 59.556 47.826 0.00 0.00 0.00 3.85
3791 4093 3.193691 CACTTGACATAGTTCCTCGACCT 59.806 47.826 0.00 0.00 0.00 3.85
3792 4094 3.192844 TCACTTGACATAGTTCCTCGACC 59.807 47.826 0.00 0.00 0.00 4.79
3793 4095 4.167268 GTCACTTGACATAGTTCCTCGAC 58.833 47.826 4.43 0.00 44.18 4.20
3794 4096 4.436242 GTCACTTGACATAGTTCCTCGA 57.564 45.455 4.43 0.00 44.18 4.04
3812 4114 2.583024 TTCATGAGTGGCCATTGTCA 57.417 45.000 9.72 13.47 0.00 3.58
3813 4115 3.940209 TTTTCATGAGTGGCCATTGTC 57.060 42.857 9.72 7.29 0.00 3.18
3845 4147 6.618811 AGCTTCATGTTGTGATTCTCAAATC 58.381 36.000 2.90 0.00 41.48 2.17
3846 4148 6.585695 AGCTTCATGTTGTGATTCTCAAAT 57.414 33.333 2.90 0.00 36.54 2.32
3847 4149 6.395426 AAGCTTCATGTTGTGATTCTCAAA 57.605 33.333 0.00 0.00 36.54 2.69
3848 4150 6.149973 CCTAAGCTTCATGTTGTGATTCTCAA 59.850 38.462 0.00 0.00 36.54 3.02
3849 4151 5.645067 CCTAAGCTTCATGTTGTGATTCTCA 59.355 40.000 0.00 0.00 36.54 3.27
3850 4152 5.877012 TCCTAAGCTTCATGTTGTGATTCTC 59.123 40.000 0.00 0.00 36.54 2.87
3851 4153 5.645497 GTCCTAAGCTTCATGTTGTGATTCT 59.355 40.000 0.00 0.00 36.54 2.40
3852 4154 5.412594 TGTCCTAAGCTTCATGTTGTGATTC 59.587 40.000 0.00 0.00 36.54 2.52
3853 4155 5.316167 TGTCCTAAGCTTCATGTTGTGATT 58.684 37.500 0.00 0.00 36.54 2.57
3854 4156 4.910195 TGTCCTAAGCTTCATGTTGTGAT 58.090 39.130 0.00 0.00 36.54 3.06
3855 4157 4.350368 TGTCCTAAGCTTCATGTTGTGA 57.650 40.909 0.00 0.00 34.25 3.58
3856 4158 4.142534 CCATGTCCTAAGCTTCATGTTGTG 60.143 45.833 19.04 6.78 36.81 3.33
3857 4159 4.012374 CCATGTCCTAAGCTTCATGTTGT 58.988 43.478 19.04 0.00 36.81 3.32
3858 4160 3.379372 CCCATGTCCTAAGCTTCATGTTG 59.621 47.826 19.04 9.99 36.81 3.33
3859 4161 3.010584 ACCCATGTCCTAAGCTTCATGTT 59.989 43.478 19.04 7.75 36.81 2.71
3860 4162 2.578021 ACCCATGTCCTAAGCTTCATGT 59.422 45.455 19.04 4.79 36.81 3.21
3861 4163 3.287867 ACCCATGTCCTAAGCTTCATG 57.712 47.619 15.52 15.52 37.83 3.07
3862 4164 5.132648 TCATAACCCATGTCCTAAGCTTCAT 59.867 40.000 0.00 0.00 35.96 2.57
3863 4165 4.473196 TCATAACCCATGTCCTAAGCTTCA 59.527 41.667 0.00 0.00 35.96 3.02
3864 4166 5.036117 TCATAACCCATGTCCTAAGCTTC 57.964 43.478 0.00 0.00 35.96 3.86
3865 4167 5.370880 AGATCATAACCCATGTCCTAAGCTT 59.629 40.000 3.48 3.48 35.96 3.74
3866 4168 4.910304 AGATCATAACCCATGTCCTAAGCT 59.090 41.667 0.00 0.00 35.96 3.74
3867 4169 4.999950 CAGATCATAACCCATGTCCTAAGC 59.000 45.833 0.00 0.00 35.96 3.09
3868 4170 6.425210 TCAGATCATAACCCATGTCCTAAG 57.575 41.667 0.00 0.00 35.96 2.18
3869 4171 6.183361 CCTTCAGATCATAACCCATGTCCTAA 60.183 42.308 0.00 0.00 35.96 2.69
3870 4172 5.307976 CCTTCAGATCATAACCCATGTCCTA 59.692 44.000 0.00 0.00 35.96 2.94
3871 4173 4.103785 CCTTCAGATCATAACCCATGTCCT 59.896 45.833 0.00 0.00 35.96 3.85
3872 4174 4.103153 TCCTTCAGATCATAACCCATGTCC 59.897 45.833 0.00 0.00 35.96 4.02
3873 4175 5.296151 TCCTTCAGATCATAACCCATGTC 57.704 43.478 0.00 0.00 35.96 3.06
3874 4176 5.715439 TTCCTTCAGATCATAACCCATGT 57.285 39.130 0.00 0.00 35.96 3.21
3875 4177 7.408756 TTTTTCCTTCAGATCATAACCCATG 57.591 36.000 0.00 0.00 35.81 3.66
3897 4199 7.331687 CACAGGCTCGAAAATTTCCATATTTTT 59.668 33.333 0.00 0.00 37.72 1.94
3898 4200 6.813152 CACAGGCTCGAAAATTTCCATATTTT 59.187 34.615 0.00 0.00 39.68 1.82
3899 4201 6.071391 ACACAGGCTCGAAAATTTCCATATTT 60.071 34.615 0.00 0.00 0.00 1.40
3900 4202 5.418840 ACACAGGCTCGAAAATTTCCATATT 59.581 36.000 0.00 0.00 0.00 1.28
3901 4203 4.949856 ACACAGGCTCGAAAATTTCCATAT 59.050 37.500 0.00 0.00 0.00 1.78
3902 4204 4.155826 CACACAGGCTCGAAAATTTCCATA 59.844 41.667 0.00 0.00 0.00 2.74
3903 4205 3.057315 CACACAGGCTCGAAAATTTCCAT 60.057 43.478 0.00 0.00 0.00 3.41
3904 4206 2.293122 CACACAGGCTCGAAAATTTCCA 59.707 45.455 0.00 0.00 0.00 3.53
3905 4207 2.293399 ACACACAGGCTCGAAAATTTCC 59.707 45.455 0.00 0.00 0.00 3.13
3906 4208 3.626028 ACACACAGGCTCGAAAATTTC 57.374 42.857 0.00 0.00 0.00 2.17
3907 4209 3.705604 CAACACACAGGCTCGAAAATTT 58.294 40.909 0.00 0.00 0.00 1.82
3908 4210 2.543653 GCAACACACAGGCTCGAAAATT 60.544 45.455 0.00 0.00 0.00 1.82
3909 4211 1.001378 GCAACACACAGGCTCGAAAAT 60.001 47.619 0.00 0.00 0.00 1.82
3910 4212 0.380378 GCAACACACAGGCTCGAAAA 59.620 50.000 0.00 0.00 0.00 2.29
3911 4213 0.746204 TGCAACACACAGGCTCGAAA 60.746 50.000 0.00 0.00 0.00 3.46
3912 4214 0.746204 TTGCAACACACAGGCTCGAA 60.746 50.000 0.00 0.00 0.00 3.71
3913 4215 1.153269 TTGCAACACACAGGCTCGA 60.153 52.632 0.00 0.00 0.00 4.04
3914 4216 1.009675 GTTGCAACACACAGGCTCG 60.010 57.895 24.52 0.00 0.00 5.03
3915 4217 1.009675 CGTTGCAACACACAGGCTC 60.010 57.895 28.01 0.00 0.00 4.70
3916 4218 2.480610 CCGTTGCAACACACAGGCT 61.481 57.895 28.01 0.00 0.00 4.58
3917 4219 1.440938 TACCGTTGCAACACACAGGC 61.441 55.000 28.01 0.00 0.00 4.85
3918 4220 0.586319 CTACCGTTGCAACACACAGG 59.414 55.000 28.01 21.66 0.00 4.00
3919 4221 1.526887 CTCTACCGTTGCAACACACAG 59.473 52.381 28.01 17.94 0.00 3.66
3920 4222 1.137282 TCTCTACCGTTGCAACACACA 59.863 47.619 28.01 9.76 0.00 3.72
3921 4223 1.860676 TCTCTACCGTTGCAACACAC 58.139 50.000 28.01 3.05 0.00 3.82
3922 4224 2.605837 TTCTCTACCGTTGCAACACA 57.394 45.000 28.01 11.82 0.00 3.72
3923 4225 3.955771 TTTTCTCTACCGTTGCAACAC 57.044 42.857 28.01 4.26 0.00 3.32
3924 4226 5.277825 CAATTTTTCTCTACCGTTGCAACA 58.722 37.500 28.01 9.07 0.00 3.33
3925 4227 4.679654 CCAATTTTTCTCTACCGTTGCAAC 59.320 41.667 19.89 19.89 0.00 4.17
3926 4228 4.794655 GCCAATTTTTCTCTACCGTTGCAA 60.795 41.667 0.00 0.00 0.00 4.08
3927 4229 3.305064 GCCAATTTTTCTCTACCGTTGCA 60.305 43.478 0.00 0.00 0.00 4.08
3928 4230 3.242518 GCCAATTTTTCTCTACCGTTGC 58.757 45.455 0.00 0.00 0.00 4.17
3929 4231 3.366985 GGGCCAATTTTTCTCTACCGTTG 60.367 47.826 4.39 0.00 0.00 4.10
3930 4232 2.823747 GGGCCAATTTTTCTCTACCGTT 59.176 45.455 4.39 0.00 0.00 4.44
3931 4233 2.443416 GGGCCAATTTTTCTCTACCGT 58.557 47.619 4.39 0.00 0.00 4.83
3932 4234 1.400494 CGGGCCAATTTTTCTCTACCG 59.600 52.381 4.39 0.00 0.00 4.02
3933 4235 2.443416 ACGGGCCAATTTTTCTCTACC 58.557 47.619 4.39 0.00 0.00 3.18
3934 4236 5.830000 AATACGGGCCAATTTTTCTCTAC 57.170 39.130 4.39 0.00 0.00 2.59
3935 4237 7.340256 TCTTAATACGGGCCAATTTTTCTCTA 58.660 34.615 4.39 0.00 0.00 2.43
3936 4238 6.184789 TCTTAATACGGGCCAATTTTTCTCT 58.815 36.000 4.39 0.00 0.00 3.10
3937 4239 6.445357 TCTTAATACGGGCCAATTTTTCTC 57.555 37.500 4.39 0.00 0.00 2.87
3938 4240 7.418337 AATCTTAATACGGGCCAATTTTTCT 57.582 32.000 4.39 0.00 0.00 2.52
3939 4241 9.589111 TTTAATCTTAATACGGGCCAATTTTTC 57.411 29.630 4.39 0.00 0.00 2.29
3971 4273 8.938906 GCTAAATTTTTCATGAATTGTGGATGT 58.061 29.630 9.40 0.00 0.00 3.06
3972 4274 9.158233 AGCTAAATTTTTCATGAATTGTGGATG 57.842 29.630 9.40 0.00 0.00 3.51
3973 4275 9.729281 AAGCTAAATTTTTCATGAATTGTGGAT 57.271 25.926 9.40 0.00 0.00 3.41
3974 4276 9.558396 AAAGCTAAATTTTTCATGAATTGTGGA 57.442 25.926 9.40 0.00 0.00 4.02
4010 4312 9.500785 TGACAATAGTTCATTCATGTTTCTACA 57.499 29.630 0.00 0.00 38.95 2.74
4013 4315 8.849168 TGTTGACAATAGTTCATTCATGTTTCT 58.151 29.630 0.00 0.00 0.00 2.52
4014 4316 9.462174 TTGTTGACAATAGTTCATTCATGTTTC 57.538 29.630 0.00 0.00 0.00 2.78
4015 4317 9.985730 ATTGTTGACAATAGTTCATTCATGTTT 57.014 25.926 7.55 0.00 44.09 2.83
4016 4318 9.630098 GATTGTTGACAATAGTTCATTCATGTT 57.370 29.630 9.19 0.00 45.72 2.71
4017 4319 8.795513 TGATTGTTGACAATAGTTCATTCATGT 58.204 29.630 9.19 0.00 45.72 3.21
4018 4320 9.797556 ATGATTGTTGACAATAGTTCATTCATG 57.202 29.630 9.19 0.00 45.72 3.07
4020 4322 9.234827 AGATGATTGTTGACAATAGTTCATTCA 57.765 29.630 9.19 2.83 45.72 2.57
4022 4324 9.850628 CAAGATGATTGTTGACAATAGTTCATT 57.149 29.630 9.19 0.00 45.72 2.57
4023 4325 9.017509 ACAAGATGATTGTTGACAATAGTTCAT 57.982 29.630 9.19 9.26 45.72 2.57
4024 4326 8.394971 ACAAGATGATTGTTGACAATAGTTCA 57.605 30.769 9.19 5.10 45.72 3.18
4039 4341 9.880157 CCCTCAAAATCAAATAACAAGATGATT 57.120 29.630 0.00 0.00 42.61 2.57
4040 4342 9.258629 TCCCTCAAAATCAAATAACAAGATGAT 57.741 29.630 0.00 0.00 34.11 2.45
4041 4343 8.648698 TCCCTCAAAATCAAATAACAAGATGA 57.351 30.769 0.00 0.00 0.00 2.92
4042 4344 9.880157 AATCCCTCAAAATCAAATAACAAGATG 57.120 29.630 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.