Multiple sequence alignment - TraesCS4D01G150500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G150500 chr4D 100.000 4897 0 0 1 4897 168195378 168200274 0.000000e+00 9044.0
1 TraesCS4D01G150500 chr4D 95.349 516 24 0 1 516 310366257 310365742 0.000000e+00 821.0
2 TraesCS4D01G150500 chr4D 83.168 101 17 0 1773 1873 70119509 70119609 5.220000e-15 93.5
3 TraesCS4D01G150500 chr4B 96.895 2351 49 9 536 2884 155380555 155378227 0.000000e+00 3916.0
4 TraesCS4D01G150500 chr4B 90.651 1583 76 25 3378 4897 155378223 155376650 0.000000e+00 2037.0
5 TraesCS4D01G150500 chr4B 89.518 477 43 7 2882 3353 497161643 497162117 9.070000e-167 597.0
6 TraesCS4D01G150500 chr4B 83.168 101 17 0 1773 1873 103773369 103773469 5.220000e-15 93.5
7 TraesCS4D01G150500 chr4A 93.409 1411 54 19 1472 2872 363711558 363712939 0.000000e+00 2054.0
8 TraesCS4D01G150500 chr4A 88.227 705 23 13 633 1312 363710225 363710894 0.000000e+00 787.0
9 TraesCS4D01G150500 chr4A 89.619 472 30 11 3427 3892 363712937 363713395 2.540000e-162 582.0
10 TraesCS4D01G150500 chr4A 83.570 493 62 7 4420 4894 363719102 363719593 1.250000e-120 444.0
11 TraesCS4D01G150500 chr4A 89.398 349 19 6 3905 4251 363713450 363713782 1.630000e-114 424.0
12 TraesCS4D01G150500 chr4A 96.809 188 6 0 1303 1490 363711358 363711545 1.020000e-81 315.0
13 TraesCS4D01G150500 chr4A 94.545 110 3 1 536 645 363709944 363710050 3.030000e-37 167.0
14 TraesCS4D01G150500 chr4A 91.150 113 10 0 4258 4370 363714715 363714827 2.360000e-33 154.0
15 TraesCS4D01G150500 chr4A 83.168 101 17 0 1773 1873 522294541 522294641 5.220000e-15 93.5
16 TraesCS4D01G150500 chr3D 95.577 520 22 1 1 519 160907161 160907680 0.000000e+00 832.0
17 TraesCS4D01G150500 chr3D 96.400 500 18 0 1 500 191558097 191557598 0.000000e+00 824.0
18 TraesCS4D01G150500 chr3D 94.981 518 24 2 1 517 214959215 214959731 0.000000e+00 811.0
19 TraesCS4D01G150500 chr6D 95.551 517 22 1 1 517 373403119 373402604 0.000000e+00 826.0
20 TraesCS4D01G150500 chr6D 74.111 506 100 23 1737 2228 335375780 335375292 3.890000e-41 180.0
21 TraesCS4D01G150500 chr5D 95.349 516 24 0 1 516 555500133 555500648 0.000000e+00 821.0
22 TraesCS4D01G150500 chr5D 91.083 314 22 4 3074 3385 321606727 321607036 2.110000e-113 420.0
23 TraesCS4D01G150500 chr3A 95.367 518 21 3 1 517 660861297 660860782 0.000000e+00 821.0
24 TraesCS4D01G150500 chr2D 95.183 519 21 3 1 518 486304243 486304758 0.000000e+00 817.0
25 TraesCS4D01G150500 chr2D 95.155 516 23 2 1 516 70391433 70391946 0.000000e+00 813.0
26 TraesCS4D01G150500 chr2D 91.387 476 37 3 2885 3357 593220975 593221449 0.000000e+00 649.0
27 TraesCS4D01G150500 chr2D 91.646 395 30 3 2955 3346 542742509 542742903 1.200000e-150 544.0
28 TraesCS4D01G150500 chr2D 80.288 208 37 4 1738 1943 509942710 509942915 2.360000e-33 154.0
29 TraesCS4D01G150500 chr2B 91.614 477 35 4 2885 3357 719492118 719492593 0.000000e+00 654.0
30 TraesCS4D01G150500 chr2A 90.224 491 41 6 2879 3363 732236520 732236031 6.920000e-178 634.0
31 TraesCS4D01G150500 chr6B 90.289 484 41 5 2884 3362 474270960 474271442 3.220000e-176 628.0
32 TraesCS4D01G150500 chr6B 81.643 207 36 2 1738 1943 485292909 485293114 2.340000e-38 171.0
33 TraesCS4D01G150500 chr7D 89.918 486 36 6 2878 3358 82898053 82897576 9.010000e-172 614.0
34 TraesCS4D01G150500 chr7D 90.332 331 27 4 2872 3199 467718988 467718660 3.500000e-116 429.0
35 TraesCS4D01G150500 chr5B 86.335 483 50 11 2884 3358 493482527 493482053 3.380000e-141 512.0
36 TraesCS4D01G150500 chr6A 81.731 208 36 2 1737 1943 475000348 475000142 6.520000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G150500 chr4D 168195378 168200274 4896 False 9044.000000 9044 100.000000 1 4897 1 chr4D.!!$F2 4896
1 TraesCS4D01G150500 chr4D 310365742 310366257 515 True 821.000000 821 95.349000 1 516 1 chr4D.!!$R1 515
2 TraesCS4D01G150500 chr4B 155376650 155380555 3905 True 2976.500000 3916 93.773000 536 4897 2 chr4B.!!$R1 4361
3 TraesCS4D01G150500 chr4A 363709944 363714827 4883 False 640.428571 2054 91.879571 536 4370 7 chr4A.!!$F3 3834
4 TraesCS4D01G150500 chr3D 160907161 160907680 519 False 832.000000 832 95.577000 1 519 1 chr3D.!!$F1 518
5 TraesCS4D01G150500 chr3D 214959215 214959731 516 False 811.000000 811 94.981000 1 517 1 chr3D.!!$F2 516
6 TraesCS4D01G150500 chr6D 373402604 373403119 515 True 826.000000 826 95.551000 1 517 1 chr6D.!!$R2 516
7 TraesCS4D01G150500 chr5D 555500133 555500648 515 False 821.000000 821 95.349000 1 516 1 chr5D.!!$F2 515
8 TraesCS4D01G150500 chr3A 660860782 660861297 515 True 821.000000 821 95.367000 1 517 1 chr3A.!!$R1 516
9 TraesCS4D01G150500 chr2D 486304243 486304758 515 False 817.000000 817 95.183000 1 518 1 chr2D.!!$F2 517
10 TraesCS4D01G150500 chr2D 70391433 70391946 513 False 813.000000 813 95.155000 1 516 1 chr2D.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 458 0.116342 TGTGGGCTGGTCCTCTTAGA 59.884 55.0 0.0 0.0 34.39 2.1 F
1023 1231 0.038744 CCATCAAGGGCAACTCTGGT 59.961 55.0 0.0 0.0 0.00 4.0 F
2814 3546 0.037790 GCGTCATCTATGAGAGGGGC 60.038 60.0 0.0 0.0 37.51 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2715 0.393267 ACAATGGCAATGGCAATGGC 60.393 50.0 25.17 21.05 42.18 4.40 R
2883 3616 0.035820 CACGGGCCCTTTTGCTAGTA 60.036 55.0 22.43 0.00 0.00 1.82 R
4683 6427 0.108520 GCGGTAGGAAATGGACGACA 60.109 55.0 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 144 7.530426 AAAATGGCAATCTAGAACTTTGACT 57.470 32.000 10.91 0.00 29.52 3.41
173 176 1.338973 CTGCAGTTGAGCAAACATGGT 59.661 47.619 5.25 0.00 45.13 3.55
248 251 0.395312 AACGAACATGGACGAGGGTT 59.605 50.000 17.79 2.32 0.00 4.11
453 458 0.116342 TGTGGGCTGGTCCTCTTAGA 59.884 55.000 0.00 0.00 34.39 2.10
454 459 0.827368 GTGGGCTGGTCCTCTTAGAG 59.173 60.000 1.56 1.56 34.39 2.43
490 495 0.466124 GAGCAGATCCCTTAACGCCT 59.534 55.000 0.00 0.00 0.00 5.52
495 500 2.167693 CAGATCCCTTAACGCCTACACA 59.832 50.000 0.00 0.00 0.00 3.72
503 508 1.234615 AACGCCTACACATGTGGCAC 61.235 55.000 28.64 11.55 40.09 5.01
519 524 1.715585 CACTTAGCGGCGTCCATTG 59.284 57.895 9.37 0.00 0.00 2.82
520 525 2.106683 ACTTAGCGGCGTCCATTGC 61.107 57.895 9.37 0.00 0.00 3.56
521 526 2.046796 TTAGCGGCGTCCATTGCA 60.047 55.556 9.37 0.00 0.00 4.08
522 527 1.643868 CTTAGCGGCGTCCATTGCAA 61.644 55.000 9.37 0.00 0.00 4.08
523 528 1.237954 TTAGCGGCGTCCATTGCAAA 61.238 50.000 9.37 0.00 0.00 3.68
524 529 1.029408 TAGCGGCGTCCATTGCAAAT 61.029 50.000 9.37 0.00 0.00 2.32
525 530 1.445926 GCGGCGTCCATTGCAAATT 60.446 52.632 9.37 0.00 0.00 1.82
526 531 0.179150 GCGGCGTCCATTGCAAATTA 60.179 50.000 9.37 0.00 0.00 1.40
527 532 1.535860 GCGGCGTCCATTGCAAATTAT 60.536 47.619 9.37 0.00 0.00 1.28
528 533 2.384382 CGGCGTCCATTGCAAATTATC 58.616 47.619 1.71 0.00 0.00 1.75
529 534 2.033299 CGGCGTCCATTGCAAATTATCT 59.967 45.455 1.71 0.00 0.00 1.98
530 535 3.374745 GGCGTCCATTGCAAATTATCTG 58.625 45.455 1.71 0.00 0.00 2.90
531 536 3.181487 GGCGTCCATTGCAAATTATCTGT 60.181 43.478 1.71 0.00 0.00 3.41
532 537 4.037690 GCGTCCATTGCAAATTATCTGTC 58.962 43.478 1.71 0.00 0.00 3.51
533 538 4.201950 GCGTCCATTGCAAATTATCTGTCT 60.202 41.667 1.71 0.00 0.00 3.41
534 539 5.007626 GCGTCCATTGCAAATTATCTGTCTA 59.992 40.000 1.71 0.00 0.00 2.59
589 594 2.070028 TGCAAAAGCGCAGTCGTAATA 58.930 42.857 11.47 0.00 36.86 0.98
590 595 2.675844 TGCAAAAGCGCAGTCGTAATAT 59.324 40.909 11.47 0.00 36.86 1.28
591 596 3.866327 TGCAAAAGCGCAGTCGTAATATA 59.134 39.130 11.47 0.00 36.86 0.86
689 881 0.536006 CCCAGATTCCAAGATCCGCC 60.536 60.000 0.00 0.00 0.00 6.13
728 920 3.554934 TGAGCCTTCTCAACAAACACAT 58.445 40.909 0.00 0.00 45.69 3.21
739 931 4.646945 TCAACAAACACATGGTAACCACAT 59.353 37.500 0.00 0.00 35.80 3.21
741 933 4.211125 ACAAACACATGGTAACCACATGA 58.789 39.130 11.87 0.00 46.60 3.07
742 934 4.832266 ACAAACACATGGTAACCACATGAT 59.168 37.500 11.87 0.00 46.60 2.45
743 935 5.048083 ACAAACACATGGTAACCACATGATC 60.048 40.000 11.87 0.00 46.60 2.92
744 936 3.620488 ACACATGGTAACCACATGATCC 58.380 45.455 11.87 0.00 46.60 3.36
745 937 2.613595 CACATGGTAACCACATGATCCG 59.386 50.000 11.87 0.00 46.60 4.18
746 938 2.221169 CATGGTAACCACATGATCCGG 58.779 52.381 0.00 0.00 46.60 5.14
747 939 1.281419 TGGTAACCACATGATCCGGT 58.719 50.000 0.00 0.00 33.32 5.28
748 940 2.468915 TGGTAACCACATGATCCGGTA 58.531 47.619 0.00 0.00 31.12 4.02
749 941 2.168936 TGGTAACCACATGATCCGGTAC 59.831 50.000 0.00 0.00 31.12 3.34
750 942 6.534479 ATGGTAACCACATGATCCGGTACG 62.534 50.000 0.00 0.00 45.56 3.67
795 987 1.010574 CGCGCGTTTTCCTCAACAA 60.011 52.632 24.19 0.00 0.00 2.83
796 988 1.259544 CGCGCGTTTTCCTCAACAAC 61.260 55.000 24.19 0.00 0.00 3.32
797 989 0.248296 GCGCGTTTTCCTCAACAACA 60.248 50.000 8.43 0.00 0.00 3.33
947 1139 5.099575 GTGTGTTCAATTCGTGTTCCTTTT 58.900 37.500 0.00 0.00 0.00 2.27
972 1164 3.803231 TGATGCATTTGTTCTTGTTGTGC 59.197 39.130 0.00 0.00 0.00 4.57
1023 1231 0.038744 CCATCAAGGGCAACTCTGGT 59.961 55.000 0.00 0.00 0.00 4.00
1060 1268 2.124612 CGCTGGGCATGGTGATCA 60.125 61.111 0.00 0.00 0.00 2.92
1293 1510 4.436998 CTCGCGGACCACACTCCC 62.437 72.222 6.13 0.00 0.00 4.30
1530 2251 0.819259 AGTACGAGGGCGCCGTATTA 60.819 55.000 23.69 13.15 43.19 0.98
1678 2399 5.705441 AGCCATTATTCACGTTTTCTTCTGA 59.295 36.000 0.00 0.00 0.00 3.27
1679 2400 6.375455 AGCCATTATTCACGTTTTCTTCTGAT 59.625 34.615 0.00 0.00 0.00 2.90
1680 2401 7.552687 AGCCATTATTCACGTTTTCTTCTGATA 59.447 33.333 0.00 0.00 0.00 2.15
1681 2402 7.640240 GCCATTATTCACGTTTTCTTCTGATAC 59.360 37.037 0.00 0.00 0.00 2.24
1870 2600 2.892425 GCCTTCATCGGCGTCCTG 60.892 66.667 6.85 3.58 40.79 3.86
1873 2603 3.740128 CTTCATCGGCGTCCTGGGG 62.740 68.421 6.85 0.00 0.00 4.96
1984 2714 4.584327 GACGCGATCGACACGTAT 57.416 55.556 21.57 0.00 40.69 3.06
1985 2715 2.114037 GACGCGATCGACACGTATG 58.886 57.895 21.57 0.00 40.69 2.39
1987 2717 2.636227 CGCGATCGACACGTATGCC 61.636 63.158 21.57 0.00 38.10 4.40
1988 2718 1.587876 GCGATCGACACGTATGCCA 60.588 57.895 21.57 0.00 0.00 4.92
1989 2719 0.939577 GCGATCGACACGTATGCCAT 60.940 55.000 21.57 0.00 0.00 4.40
1992 2724 0.937304 ATCGACACGTATGCCATTGC 59.063 50.000 0.00 0.00 38.26 3.56
2016 2748 3.872511 TGCCATTGTCATGATTTGGTC 57.127 42.857 17.67 12.52 31.07 4.02
2355 3087 5.092105 GTCTGGTGAGATCAATATCGATCG 58.908 45.833 9.36 9.36 45.39 3.69
2408 3140 1.788308 GGATTCAAAACGTCACGTCGA 59.212 47.619 1.67 0.00 39.99 4.20
2529 3261 2.947532 CGGAGGAGAACTGCAGCCA 61.948 63.158 15.27 0.00 37.39 4.75
2532 3264 1.615384 GGAGGAGAACTGCAGCCATTT 60.615 52.381 15.27 0.00 37.51 2.32
2648 3380 1.672881 GAGGCATGTGAAGGCATACAC 59.327 52.381 0.00 0.00 37.51 2.90
2814 3546 0.037790 GCGTCATCTATGAGAGGGGC 60.038 60.000 0.00 0.00 37.51 5.80
2897 3630 8.996024 TTCATTTTATTTACTAGCAAAAGGGC 57.004 30.769 0.00 0.00 0.00 5.19
2898 3631 7.552459 TCATTTTATTTACTAGCAAAAGGGCC 58.448 34.615 0.00 0.00 0.00 5.80
2899 3632 5.925506 TTTATTTACTAGCAAAAGGGCCC 57.074 39.130 16.46 16.46 0.00 5.80
2900 3633 1.828979 TTTACTAGCAAAAGGGCCCG 58.171 50.000 18.44 2.33 0.00 6.13
2901 3634 0.694196 TTACTAGCAAAAGGGCCCGT 59.306 50.000 18.44 11.44 0.00 5.28
2902 3635 0.035820 TACTAGCAAAAGGGCCCGTG 60.036 55.000 18.44 17.24 0.00 4.94
2903 3636 2.675075 TAGCAAAAGGGCCCGTGC 60.675 61.111 30.21 30.21 37.26 5.34
2906 3639 3.601685 CAAAAGGGCCCGTGCGTT 61.602 61.111 18.44 0.59 38.85 4.84
2907 3640 3.601685 AAAAGGGCCCGTGCGTTG 61.602 61.111 18.44 0.00 38.85 4.10
2924 3657 3.643159 GTTGCAACGGGAGAAAAGAAT 57.357 42.857 14.90 0.00 0.00 2.40
2925 3658 3.308530 GTTGCAACGGGAGAAAAGAATG 58.691 45.455 14.90 0.00 0.00 2.67
2926 3659 1.269448 TGCAACGGGAGAAAAGAATGC 59.731 47.619 0.00 0.00 0.00 3.56
2927 3660 1.402852 GCAACGGGAGAAAAGAATGCC 60.403 52.381 0.00 0.00 0.00 4.40
2928 3661 1.885887 CAACGGGAGAAAAGAATGCCA 59.114 47.619 0.00 0.00 0.00 4.92
2929 3662 1.534729 ACGGGAGAAAAGAATGCCAC 58.465 50.000 0.00 0.00 0.00 5.01
2930 3663 1.202879 ACGGGAGAAAAGAATGCCACA 60.203 47.619 0.00 0.00 0.00 4.17
2931 3664 1.200020 CGGGAGAAAAGAATGCCACAC 59.800 52.381 0.00 0.00 0.00 3.82
2932 3665 1.200020 GGGAGAAAAGAATGCCACACG 59.800 52.381 0.00 0.00 0.00 4.49
2933 3666 1.401539 GGAGAAAAGAATGCCACACGC 60.402 52.381 0.00 0.00 38.31 5.34
2934 3667 1.537202 GAGAAAAGAATGCCACACGCT 59.463 47.619 0.00 0.00 38.78 5.07
2935 3668 1.537202 AGAAAAGAATGCCACACGCTC 59.463 47.619 0.00 0.00 38.78 5.03
2936 3669 1.537202 GAAAAGAATGCCACACGCTCT 59.463 47.619 0.00 0.00 38.78 4.09
2937 3670 1.609208 AAAGAATGCCACACGCTCTT 58.391 45.000 0.00 0.00 34.38 2.85
2938 3671 2.472695 AAGAATGCCACACGCTCTTA 57.527 45.000 0.00 0.00 38.78 2.10
2939 3672 2.472695 AGAATGCCACACGCTCTTAA 57.527 45.000 0.00 0.00 38.78 1.85
2940 3673 2.991250 AGAATGCCACACGCTCTTAAT 58.009 42.857 0.00 0.00 38.78 1.40
2941 3674 3.347216 AGAATGCCACACGCTCTTAATT 58.653 40.909 0.00 0.00 38.78 1.40
2942 3675 3.758554 AGAATGCCACACGCTCTTAATTT 59.241 39.130 0.00 0.00 38.78 1.82
2943 3676 4.941263 AGAATGCCACACGCTCTTAATTTA 59.059 37.500 0.00 0.00 38.78 1.40
2944 3677 5.590259 AGAATGCCACACGCTCTTAATTTAT 59.410 36.000 0.00 0.00 38.78 1.40
2945 3678 6.765989 AGAATGCCACACGCTCTTAATTTATA 59.234 34.615 0.00 0.00 38.78 0.98
2946 3679 6.935741 ATGCCACACGCTCTTAATTTATAA 57.064 33.333 0.00 0.00 38.78 0.98
2947 3680 6.745159 TGCCACACGCTCTTAATTTATAAA 57.255 33.333 0.00 0.00 38.78 1.40
2948 3681 7.147143 TGCCACACGCTCTTAATTTATAAAA 57.853 32.000 1.21 0.00 38.78 1.52
2949 3682 7.594714 TGCCACACGCTCTTAATTTATAAAAA 58.405 30.769 1.21 0.00 38.78 1.94
2980 3713 5.986004 ATTTGAGTATTTGTAGCTACGGC 57.014 39.130 18.74 7.05 39.06 5.68
2981 3714 3.447918 TGAGTATTTGTAGCTACGGCC 57.552 47.619 18.74 0.00 39.73 6.13
2982 3715 2.101917 TGAGTATTTGTAGCTACGGCCC 59.898 50.000 18.74 5.93 39.73 5.80
2983 3716 2.101917 GAGTATTTGTAGCTACGGCCCA 59.898 50.000 18.74 0.00 39.73 5.36
2984 3717 2.502538 AGTATTTGTAGCTACGGCCCAA 59.497 45.455 18.74 4.59 39.73 4.12
2985 3718 2.500392 ATTTGTAGCTACGGCCCAAA 57.500 45.000 18.74 13.07 41.02 3.28
2986 3719 1.525941 TTTGTAGCTACGGCCCAAAC 58.474 50.000 18.74 0.00 35.97 2.93
2987 3720 0.397187 TTGTAGCTACGGCCCAAACA 59.603 50.000 18.74 0.00 39.73 2.83
2988 3721 0.397187 TGTAGCTACGGCCCAAACAA 59.603 50.000 18.74 0.00 39.73 2.83
2989 3722 1.202782 TGTAGCTACGGCCCAAACAAA 60.203 47.619 18.74 0.00 39.73 2.83
2990 3723 1.467342 GTAGCTACGGCCCAAACAAAG 59.533 52.381 8.40 0.00 39.73 2.77
2991 3724 0.109723 AGCTACGGCCCAAACAAAGA 59.890 50.000 0.00 0.00 39.73 2.52
2992 3725 1.173913 GCTACGGCCCAAACAAAGAT 58.826 50.000 0.00 0.00 0.00 2.40
2993 3726 1.135402 GCTACGGCCCAAACAAAGATG 60.135 52.381 0.00 0.00 0.00 2.90
2994 3727 1.472480 CTACGGCCCAAACAAAGATGG 59.528 52.381 0.00 0.00 36.42 3.51
2995 3728 0.469144 ACGGCCCAAACAAAGATGGT 60.469 50.000 0.00 0.00 34.79 3.55
2996 3729 0.678950 CGGCCCAAACAAAGATGGTT 59.321 50.000 0.00 0.00 36.75 3.67
2997 3730 1.069978 CGGCCCAAACAAAGATGGTTT 59.930 47.619 0.00 0.00 32.99 3.27
2998 3731 2.484594 CGGCCCAAACAAAGATGGTTTT 60.485 45.455 0.00 0.00 32.99 2.43
2999 3732 3.550820 GGCCCAAACAAAGATGGTTTTT 58.449 40.909 0.00 0.00 32.99 1.94
3017 3750 4.379339 TTTTTCCTACAAAAGCGCAAGT 57.621 36.364 11.47 4.60 41.68 3.16
3018 3751 4.379339 TTTTCCTACAAAAGCGCAAGTT 57.621 36.364 11.47 0.00 41.68 2.66
3019 3752 3.619233 TTCCTACAAAAGCGCAAGTTC 57.381 42.857 11.47 0.00 41.68 3.01
3020 3753 2.566913 TCCTACAAAAGCGCAAGTTCA 58.433 42.857 11.47 0.00 41.68 3.18
3021 3754 2.946329 TCCTACAAAAGCGCAAGTTCAA 59.054 40.909 11.47 0.00 41.68 2.69
3022 3755 3.003275 TCCTACAAAAGCGCAAGTTCAAG 59.997 43.478 11.47 0.00 41.68 3.02
3023 3756 3.003275 CCTACAAAAGCGCAAGTTCAAGA 59.997 43.478 11.47 0.00 41.68 3.02
3024 3757 3.715628 ACAAAAGCGCAAGTTCAAGAT 57.284 38.095 11.47 0.00 41.68 2.40
3025 3758 4.045636 ACAAAAGCGCAAGTTCAAGATT 57.954 36.364 11.47 0.00 41.68 2.40
3026 3759 4.044426 ACAAAAGCGCAAGTTCAAGATTC 58.956 39.130 11.47 0.00 41.68 2.52
3027 3760 2.997485 AAGCGCAAGTTCAAGATTCC 57.003 45.000 11.47 0.00 41.68 3.01
3028 3761 1.896220 AGCGCAAGTTCAAGATTCCA 58.104 45.000 11.47 0.00 41.68 3.53
3029 3762 1.537202 AGCGCAAGTTCAAGATTCCAC 59.463 47.619 11.47 0.00 41.68 4.02
3030 3763 1.266718 GCGCAAGTTCAAGATTCCACA 59.733 47.619 0.30 0.00 41.68 4.17
3031 3764 2.095059 GCGCAAGTTCAAGATTCCACAT 60.095 45.455 0.30 0.00 41.68 3.21
3032 3765 3.495193 CGCAAGTTCAAGATTCCACATG 58.505 45.455 0.00 0.00 0.00 3.21
3033 3766 3.058016 CGCAAGTTCAAGATTCCACATGT 60.058 43.478 0.00 0.00 0.00 3.21
3034 3767 4.479619 GCAAGTTCAAGATTCCACATGTC 58.520 43.478 0.00 0.00 0.00 3.06
3035 3768 4.217118 GCAAGTTCAAGATTCCACATGTCT 59.783 41.667 0.00 0.00 0.00 3.41
3036 3769 5.278660 GCAAGTTCAAGATTCCACATGTCTT 60.279 40.000 0.00 0.00 32.70 3.01
3037 3770 6.376978 CAAGTTCAAGATTCCACATGTCTTC 58.623 40.000 0.00 0.00 30.19 2.87
3038 3771 5.874093 AGTTCAAGATTCCACATGTCTTCT 58.126 37.500 0.00 0.00 30.19 2.85
3039 3772 7.009179 AGTTCAAGATTCCACATGTCTTCTA 57.991 36.000 0.00 0.00 30.19 2.10
3040 3773 7.628234 AGTTCAAGATTCCACATGTCTTCTAT 58.372 34.615 0.00 0.00 30.19 1.98
3041 3774 8.105829 AGTTCAAGATTCCACATGTCTTCTATT 58.894 33.333 0.00 0.00 30.19 1.73
3042 3775 8.734386 GTTCAAGATTCCACATGTCTTCTATTT 58.266 33.333 0.00 0.00 30.19 1.40
3043 3776 9.958180 TTCAAGATTCCACATGTCTTCTATTTA 57.042 29.630 0.00 0.00 30.19 1.40
3044 3777 9.958180 TCAAGATTCCACATGTCTTCTATTTAA 57.042 29.630 0.00 0.00 30.19 1.52
3047 3780 9.739276 AGATTCCACATGTCTTCTATTTAAACA 57.261 29.630 0.00 0.00 0.00 2.83
3050 3783 8.335532 TCCACATGTCTTCTATTTAAACAAGG 57.664 34.615 0.00 0.00 0.00 3.61
3051 3784 7.029563 CCACATGTCTTCTATTTAAACAAGGC 58.970 38.462 0.00 0.00 0.00 4.35
3052 3785 7.094205 CCACATGTCTTCTATTTAAACAAGGCT 60.094 37.037 0.00 0.00 0.00 4.58
3053 3786 8.299570 CACATGTCTTCTATTTAAACAAGGCTT 58.700 33.333 0.00 0.00 0.00 4.35
3054 3787 8.299570 ACATGTCTTCTATTTAAACAAGGCTTG 58.700 33.333 25.06 25.06 33.85 4.01
3055 3788 6.677913 TGTCTTCTATTTAAACAAGGCTTGC 58.322 36.000 26.45 6.02 0.00 4.01
3056 3789 6.264292 TGTCTTCTATTTAAACAAGGCTTGCA 59.736 34.615 26.45 9.77 0.00 4.08
3057 3790 7.039784 TGTCTTCTATTTAAACAAGGCTTGCAT 60.040 33.333 26.45 17.44 0.00 3.96
3058 3791 7.274250 GTCTTCTATTTAAACAAGGCTTGCATG 59.726 37.037 26.45 4.61 0.00 4.06
3059 3792 6.588719 TCTATTTAAACAAGGCTTGCATGT 57.411 33.333 26.45 11.76 0.00 3.21
3060 3793 7.695480 TCTATTTAAACAAGGCTTGCATGTA 57.305 32.000 26.45 10.80 0.00 2.29
3061 3794 7.761409 TCTATTTAAACAAGGCTTGCATGTAG 58.239 34.615 26.45 18.75 0.00 2.74
3062 3795 6.588719 ATTTAAACAAGGCTTGCATGTAGA 57.411 33.333 26.45 9.40 0.00 2.59
3063 3796 6.588719 TTTAAACAAGGCTTGCATGTAGAT 57.411 33.333 26.45 1.84 0.00 1.98
3064 3797 6.588719 TTAAACAAGGCTTGCATGTAGATT 57.411 33.333 26.45 8.30 0.00 2.40
3065 3798 5.473066 AAACAAGGCTTGCATGTAGATTT 57.527 34.783 26.45 13.68 0.00 2.17
3066 3799 6.588719 AAACAAGGCTTGCATGTAGATTTA 57.411 33.333 26.45 0.00 0.00 1.40
3067 3800 6.588719 AACAAGGCTTGCATGTAGATTTAA 57.411 33.333 26.45 0.00 0.00 1.52
3068 3801 6.780457 ACAAGGCTTGCATGTAGATTTAAT 57.220 33.333 26.45 0.00 0.00 1.40
3069 3802 7.880160 ACAAGGCTTGCATGTAGATTTAATA 57.120 32.000 26.45 0.00 0.00 0.98
3070 3803 7.707104 ACAAGGCTTGCATGTAGATTTAATAC 58.293 34.615 26.45 0.00 0.00 1.89
3071 3804 6.545504 AGGCTTGCATGTAGATTTAATACG 57.454 37.500 1.14 0.00 0.00 3.06
3072 3805 6.055588 AGGCTTGCATGTAGATTTAATACGT 58.944 36.000 0.00 0.00 0.00 3.57
3073 3806 7.214381 AGGCTTGCATGTAGATTTAATACGTA 58.786 34.615 0.00 0.00 0.00 3.57
3074 3807 7.878127 AGGCTTGCATGTAGATTTAATACGTAT 59.122 33.333 1.14 1.14 0.00 3.06
3075 3808 9.146984 GGCTTGCATGTAGATTTAATACGTATA 57.853 33.333 8.83 0.00 0.00 1.47
3095 3828 9.193133 ACGTATATGAAAGAAAGACGGATAATG 57.807 33.333 0.00 0.00 33.32 1.90
3096 3829 8.162880 CGTATATGAAAGAAAGACGGATAATGC 58.837 37.037 0.00 0.00 0.00 3.56
3097 3830 8.988934 GTATATGAAAGAAAGACGGATAATGCA 58.011 33.333 0.00 0.00 0.00 3.96
3098 3831 5.545658 TGAAAGAAAGACGGATAATGCAC 57.454 39.130 0.00 0.00 0.00 4.57
3099 3832 5.245531 TGAAAGAAAGACGGATAATGCACT 58.754 37.500 0.00 0.00 0.00 4.40
3100 3833 5.122239 TGAAAGAAAGACGGATAATGCACTG 59.878 40.000 0.00 0.00 0.00 3.66
3101 3834 4.207891 AGAAAGACGGATAATGCACTGT 57.792 40.909 0.00 0.00 0.00 3.55
3102 3835 4.579869 AGAAAGACGGATAATGCACTGTT 58.420 39.130 0.00 0.00 0.00 3.16
3103 3836 4.393062 AGAAAGACGGATAATGCACTGTTG 59.607 41.667 0.00 0.00 0.00 3.33
3104 3837 3.610040 AGACGGATAATGCACTGTTGA 57.390 42.857 0.00 0.00 0.00 3.18
3105 3838 4.142609 AGACGGATAATGCACTGTTGAT 57.857 40.909 0.00 0.00 0.00 2.57
3106 3839 4.517285 AGACGGATAATGCACTGTTGATT 58.483 39.130 0.00 0.00 0.00 2.57
3107 3840 5.670485 AGACGGATAATGCACTGTTGATTA 58.330 37.500 0.00 0.00 0.00 1.75
3108 3841 6.112734 AGACGGATAATGCACTGTTGATTAA 58.887 36.000 0.00 0.00 0.00 1.40
3109 3842 6.258727 AGACGGATAATGCACTGTTGATTAAG 59.741 38.462 0.00 0.00 0.00 1.85
3110 3843 6.112734 ACGGATAATGCACTGTTGATTAAGA 58.887 36.000 0.00 0.00 0.00 2.10
3111 3844 6.767902 ACGGATAATGCACTGTTGATTAAGAT 59.232 34.615 0.00 0.00 0.00 2.40
3112 3845 7.283127 ACGGATAATGCACTGTTGATTAAGATT 59.717 33.333 0.00 0.00 0.00 2.40
3113 3846 7.588854 CGGATAATGCACTGTTGATTAAGATTG 59.411 37.037 0.00 0.00 0.00 2.67
3114 3847 7.380602 GGATAATGCACTGTTGATTAAGATTGC 59.619 37.037 3.30 3.30 36.62 3.56
3115 3848 5.648178 ATGCACTGTTGATTAAGATTGCA 57.352 34.783 13.20 13.20 45.26 4.08
3116 3849 4.797471 TGCACTGTTGATTAAGATTGCAC 58.203 39.130 8.03 0.00 39.62 4.57
3117 3850 4.520111 TGCACTGTTGATTAAGATTGCACT 59.480 37.500 8.03 0.00 39.62 4.40
3118 3851 5.091431 GCACTGTTGATTAAGATTGCACTC 58.909 41.667 5.11 0.00 36.28 3.51
3119 3852 5.106396 GCACTGTTGATTAAGATTGCACTCT 60.106 40.000 0.00 0.00 36.28 3.24
3120 3853 6.092670 GCACTGTTGATTAAGATTGCACTCTA 59.907 38.462 7.04 0.00 36.28 2.43
3121 3854 7.675870 GCACTGTTGATTAAGATTGCACTCTAG 60.676 40.741 7.04 1.24 36.28 2.43
3122 3855 7.547019 CACTGTTGATTAAGATTGCACTCTAGA 59.453 37.037 7.04 0.00 0.00 2.43
3123 3856 8.263640 ACTGTTGATTAAGATTGCACTCTAGAT 58.736 33.333 7.04 4.60 0.00 1.98
3124 3857 9.107177 CTGTTGATTAAGATTGCACTCTAGATT 57.893 33.333 7.04 0.00 0.00 2.40
3125 3858 8.886719 TGTTGATTAAGATTGCACTCTAGATTG 58.113 33.333 7.04 5.74 0.00 2.67
3126 3859 8.887717 GTTGATTAAGATTGCACTCTAGATTGT 58.112 33.333 7.04 0.00 0.00 2.71
3228 3961 9.589111 AACATGTTAAATTTGAAGTTACGGTTT 57.411 25.926 9.97 0.00 0.00 3.27
3239 3972 9.932207 TTTGAAGTTACGGTTTAGAAGATATGA 57.068 29.630 0.00 0.00 0.00 2.15
3240 3973 9.582431 TTGAAGTTACGGTTTAGAAGATATGAG 57.418 33.333 0.00 0.00 0.00 2.90
3241 3974 8.746530 TGAAGTTACGGTTTAGAAGATATGAGT 58.253 33.333 0.00 0.00 0.00 3.41
3288 4021 9.132923 TGTACTATGGGTTTAATGTCAAAAACA 57.867 29.630 13.27 0.00 43.51 2.83
3332 4065 9.457436 AAATAACATGACGGACTAAAAATACCT 57.543 29.630 0.00 0.00 0.00 3.08
3336 4069 9.457436 AACATGACGGACTAAAAATACCTATTT 57.543 29.630 0.00 0.00 37.49 1.40
3337 4070 9.106070 ACATGACGGACTAAAAATACCTATTTC 57.894 33.333 0.00 0.00 35.00 2.17
3338 4071 9.326413 CATGACGGACTAAAAATACCTATTTCT 57.674 33.333 0.00 0.00 35.00 2.52
3339 4072 9.901172 ATGACGGACTAAAAATACCTATTTCTT 57.099 29.630 0.00 0.00 35.00 2.52
3340 4073 9.729281 TGACGGACTAAAAATACCTATTTCTTT 57.271 29.630 0.00 0.00 35.00 2.52
3441 4177 5.211174 TGAAGATGATGATGCGAAGAGAT 57.789 39.130 0.00 0.00 0.00 2.75
3452 4188 4.668576 TGCGAAGAGATGTTGTTGATTC 57.331 40.909 0.00 0.00 0.00 2.52
3545 4293 4.156477 GAGTATTCAGCCTCTACAGGGAT 58.844 47.826 0.00 0.00 40.75 3.85
3583 4331 5.012561 ACTCAAAGAGATCTTAACTGCTGGT 59.987 40.000 0.00 0.00 34.61 4.00
3626 4378 1.630369 TGACAAGCTAGCTGATGGGTT 59.370 47.619 20.16 0.00 0.00 4.11
3641 4393 1.767692 GGTTGGTGGGTGGATCAGT 59.232 57.895 0.00 0.00 0.00 3.41
3722 4474 0.178961 TCCTCCGGGATGACATCGAT 60.179 55.000 9.31 0.00 36.57 3.59
3751 4503 2.351276 GGTGGACAAGGTGGCGAT 59.649 61.111 0.00 0.00 0.00 4.58
3761 4513 4.545706 GTGGCGATGGGGATGCGA 62.546 66.667 0.00 0.00 0.00 5.10
3900 4658 5.755813 CAACTTCTTCTGAGGTGTGAAATG 58.244 41.667 0.00 0.00 32.63 2.32
3901 4659 4.392940 ACTTCTTCTGAGGTGTGAAATGG 58.607 43.478 0.00 0.00 31.01 3.16
3902 4660 4.141390 ACTTCTTCTGAGGTGTGAAATGGT 60.141 41.667 0.00 0.00 31.01 3.55
3903 4661 5.071788 ACTTCTTCTGAGGTGTGAAATGGTA 59.928 40.000 0.00 0.00 31.01 3.25
4024 4824 3.503363 ACGTCGTGTAGGATGAACACTTA 59.497 43.478 0.00 0.00 44.05 2.24
4156 4956 1.790755 TCTCATGGTCGTTTTCACCG 58.209 50.000 0.00 0.00 36.61 4.94
4181 4981 5.357032 CCATTGTTCCCATTCCAACTAGTAC 59.643 44.000 0.00 0.00 0.00 2.73
4182 4982 4.196626 TGTTCCCATTCCAACTAGTACG 57.803 45.455 0.00 0.00 0.00 3.67
4183 4983 3.579586 TGTTCCCATTCCAACTAGTACGT 59.420 43.478 0.00 0.00 0.00 3.57
4184 4984 3.880047 TCCCATTCCAACTAGTACGTG 57.120 47.619 0.00 0.00 0.00 4.49
4246 5046 6.982141 ACTCAAATATTGAATAACGACGCCTA 59.018 34.615 0.00 0.00 39.58 3.93
4264 5990 2.294791 CCTAGGGAGTGCAGTTATCGAG 59.705 54.545 0.00 0.00 0.00 4.04
4294 6020 5.689383 GTTTCTGGAAACTAGCATGACAA 57.311 39.130 16.17 0.00 45.26 3.18
4353 6079 8.783833 ACAATTCTATCTCTAATATTGCGCAT 57.216 30.769 12.75 3.99 0.00 4.73
4360 6086 7.918536 ATCTCTAATATTGCGCATTCTGATT 57.081 32.000 12.75 7.44 0.00 2.57
4457 6183 0.107508 ATCACCAGAATGCGACCCAG 60.108 55.000 0.00 0.00 31.97 4.45
4474 6200 1.102809 CAGCTGCACACCTCAAACCA 61.103 55.000 0.00 0.00 0.00 3.67
4477 6203 1.799258 CTGCACACCTCAAACCAGCC 61.799 60.000 0.00 0.00 0.00 4.85
4487 6213 3.392616 CCTCAAACCAGCCCTATACATCT 59.607 47.826 0.00 0.00 0.00 2.90
4488 6214 4.384056 CTCAAACCAGCCCTATACATCTG 58.616 47.826 0.00 0.00 0.00 2.90
4520 6246 3.761897 CACCTTTCAAACCCAGTCCATA 58.238 45.455 0.00 0.00 0.00 2.74
4577 6303 2.301583 TCACATCAGATCCGACAAACCA 59.698 45.455 0.00 0.00 0.00 3.67
4581 6307 1.026718 CAGATCCGACAAACCAGCCC 61.027 60.000 0.00 0.00 0.00 5.19
4668 6412 4.998051 ACCTAGTCCACCAAATTGAATGT 58.002 39.130 0.00 0.00 0.00 2.71
4683 6427 1.550976 GAATGTCCTCTTCCCGTGTCT 59.449 52.381 0.00 0.00 0.00 3.41
4687 6431 1.213013 CCTCTTCCCGTGTCTGTCG 59.787 63.158 0.00 0.00 0.00 4.35
4702 6446 0.108520 TGTCGTCCATTTCCTACCGC 60.109 55.000 0.00 0.00 0.00 5.68
4703 6447 0.808847 GTCGTCCATTTCCTACCGCC 60.809 60.000 0.00 0.00 0.00 6.13
4714 6458 3.718210 CTACCGCCGAGCCTTCACC 62.718 68.421 0.00 0.00 0.00 4.02
4736 6480 3.316573 CTCCGCCCTTGGTCCTGTC 62.317 68.421 0.00 0.00 0.00 3.51
4738 6482 4.760047 CGCCCTTGGTCCTGTCCG 62.760 72.222 0.00 0.00 0.00 4.79
4761 6505 0.663568 CGCCGCCCTCTTAGATAACG 60.664 60.000 0.00 0.00 0.00 3.18
4772 6516 5.757320 CCTCTTAGATAACGTCTCCGAGTAA 59.243 44.000 0.00 0.00 38.42 2.24
4781 6525 0.406750 TCTCCGAGTAACCTGTCCCA 59.593 55.000 0.00 0.00 0.00 4.37
4787 6531 0.761702 AGTAACCTGTCCCACACCGT 60.762 55.000 0.00 0.00 0.00 4.83
4789 6533 1.808531 TAACCTGTCCCACACCGTCG 61.809 60.000 0.00 0.00 0.00 5.12
4847 6591 0.535553 TCCGTGGGGTAAGTTGCAAC 60.536 55.000 22.17 22.17 33.83 4.17
4851 6595 2.559330 GGGTAAGTTGCAACGCGG 59.441 61.111 23.21 0.00 0.00 6.46
4865 6609 2.508891 CGCGGAGAATGTCGTCTGC 61.509 63.158 0.00 0.00 41.01 4.26
4868 6612 1.519455 GGAGAATGTCGTCTGCGGG 60.519 63.158 0.00 0.00 38.89 6.13
4883 6627 3.009714 GGGAGGGGCGAAGGAAGT 61.010 66.667 0.00 0.00 0.00 3.01
4894 6638 1.719780 CGAAGGAAGTAACGTGAGCAC 59.280 52.381 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 4.643463 TGCAGTTGCCATGATTTCAAAAT 58.357 34.783 1.06 0.00 41.18 1.82
141 144 1.985473 AACTGCAGTTGCCATCTCAA 58.015 45.000 30.66 0.00 41.18 3.02
173 176 3.615592 GCCATGTCGGACAACTACAGTTA 60.616 47.826 15.72 0.00 34.52 2.24
490 495 1.674519 CCGCTAAGTGCCACATGTGTA 60.675 52.381 23.79 10.28 38.78 2.90
495 500 2.819595 CGCCGCTAAGTGCCACAT 60.820 61.111 0.00 0.00 38.78 3.21
503 508 1.643868 TTGCAATGGACGCCGCTAAG 61.644 55.000 0.00 0.00 0.00 2.18
519 524 9.922305 GACATAAAGTGTAGACAGATAATTTGC 57.078 33.333 0.00 0.00 42.36 3.68
526 531 8.495949 CGTTTTTGACATAAAGTGTAGACAGAT 58.504 33.333 0.00 0.00 42.36 2.90
527 532 7.517734 GCGTTTTTGACATAAAGTGTAGACAGA 60.518 37.037 0.00 0.00 42.36 3.41
528 533 6.573725 GCGTTTTTGACATAAAGTGTAGACAG 59.426 38.462 0.00 0.00 42.36 3.51
529 534 6.037281 TGCGTTTTTGACATAAAGTGTAGACA 59.963 34.615 0.00 0.00 42.36 3.41
530 535 6.423862 TGCGTTTTTGACATAAAGTGTAGAC 58.576 36.000 0.00 0.00 42.36 2.59
531 536 6.606234 TGCGTTTTTGACATAAAGTGTAGA 57.394 33.333 0.00 0.00 42.36 2.59
532 537 5.339611 GCTGCGTTTTTGACATAAAGTGTAG 59.660 40.000 0.00 0.00 42.36 2.74
533 538 5.008217 AGCTGCGTTTTTGACATAAAGTGTA 59.992 36.000 0.00 0.00 42.36 2.90
534 539 4.041723 GCTGCGTTTTTGACATAAAGTGT 58.958 39.130 0.00 0.00 45.83 3.55
541 546 1.317613 TCCAGCTGCGTTTTTGACAT 58.682 45.000 8.66 0.00 0.00 3.06
589 594 6.602009 GTGAAAGTGGTGCCCTAAAATACTAT 59.398 38.462 0.00 0.00 0.00 2.12
590 595 5.941647 GTGAAAGTGGTGCCCTAAAATACTA 59.058 40.000 0.00 0.00 0.00 1.82
591 596 4.765339 GTGAAAGTGGTGCCCTAAAATACT 59.235 41.667 0.00 0.00 0.00 2.12
689 881 3.867984 GCTCAACAAGAAGGGAGGAAGAG 60.868 52.174 0.00 0.00 0.00 2.85
728 920 1.281419 ACCGGATCATGTGGTTACCA 58.719 50.000 9.46 0.00 29.87 3.25
745 937 6.112058 AGAGGAGAATCGGTATATACGTACC 58.888 44.000 6.79 0.00 40.61 3.34
746 938 7.548780 AGAAGAGGAGAATCGGTATATACGTAC 59.451 40.741 6.79 0.00 34.37 3.67
747 939 7.619050 AGAAGAGGAGAATCGGTATATACGTA 58.381 38.462 6.79 0.00 34.37 3.57
748 940 6.474630 AGAAGAGGAGAATCGGTATATACGT 58.525 40.000 6.79 0.00 34.37 3.57
749 941 6.037391 GGAGAAGAGGAGAATCGGTATATACG 59.963 46.154 6.79 3.08 34.37 3.06
750 942 6.319405 GGGAGAAGAGGAGAATCGGTATATAC 59.681 46.154 4.14 4.14 34.37 1.47
751 943 6.424883 GGGAGAAGAGGAGAATCGGTATATA 58.575 44.000 0.00 0.00 34.37 0.86
752 944 5.265989 GGGAGAAGAGGAGAATCGGTATAT 58.734 45.833 0.00 0.00 34.37 0.86
753 945 4.664392 GGGAGAAGAGGAGAATCGGTATA 58.336 47.826 0.00 0.00 34.37 1.47
754 946 3.502356 GGGAGAAGAGGAGAATCGGTAT 58.498 50.000 0.00 0.00 34.37 2.73
795 987 3.131755 TGTTGCATCTGATCGATCTCTGT 59.868 43.478 25.02 7.09 0.00 3.41
796 988 3.714391 TGTTGCATCTGATCGATCTCTG 58.286 45.455 25.02 18.83 0.00 3.35
797 989 3.799574 GCTGTTGCATCTGATCGATCTCT 60.800 47.826 25.02 7.90 39.41 3.10
937 1129 5.294060 ACAAATGCATCAACAAAAGGAACAC 59.706 36.000 0.00 0.00 0.00 3.32
947 1139 5.291371 CACAACAAGAACAAATGCATCAACA 59.709 36.000 0.00 0.00 0.00 3.33
972 1164 1.688735 TGGATCGATCAAGGCCTACAG 59.311 52.381 25.93 0.00 0.00 2.74
1023 1231 2.571757 CTCCGCGCCTTGTACTCA 59.428 61.111 0.00 0.00 0.00 3.41
1060 1268 4.996434 GCAGCACAGCAGGACGGT 62.996 66.667 0.00 0.00 0.00 4.83
1293 1510 2.202797 CGATCCTGGTCGTGGCAG 60.203 66.667 9.54 0.00 36.88 4.85
1662 2383 5.468409 TGCATGTATCAGAAGAAAACGTGAA 59.532 36.000 0.00 0.00 34.84 3.18
1678 2399 1.881973 GCGAATGGACCATGCATGTAT 59.118 47.619 24.58 12.90 0.00 2.29
1679 2400 1.308047 GCGAATGGACCATGCATGTA 58.692 50.000 24.58 9.01 0.00 2.29
1680 2401 1.717791 CGCGAATGGACCATGCATGT 61.718 55.000 24.58 13.09 0.00 3.21
1681 2402 1.009335 CGCGAATGGACCATGCATG 60.009 57.895 20.19 20.19 0.00 4.06
1684 2405 3.507924 TGCGCGAATGGACCATGC 61.508 61.111 12.10 4.76 0.00 4.06
1870 2600 4.097361 GGGAGCTTGACGGACCCC 62.097 72.222 0.00 0.00 35.00 4.95
1873 2603 0.744771 GGAATGGGAGCTTGACGGAC 60.745 60.000 0.00 0.00 0.00 4.79
1985 2715 0.393267 ACAATGGCAATGGCAATGGC 60.393 50.000 25.17 21.05 42.18 4.40
1987 2717 2.388310 TGACAATGGCAATGGCAATG 57.612 45.000 21.07 21.07 43.27 2.82
1988 2718 2.502130 TCATGACAATGGCAATGGCAAT 59.498 40.909 16.27 1.56 39.73 3.56
1989 2719 1.900486 TCATGACAATGGCAATGGCAA 59.100 42.857 16.27 0.00 39.73 4.52
1992 2724 3.874543 CCAAATCATGACAATGGCAATGG 59.125 43.478 7.57 0.00 34.30 3.16
2025 2757 4.766891 CCTGCATCAAAACTTCCTTCCTTA 59.233 41.667 0.00 0.00 0.00 2.69
2094 2826 1.227674 GCCGGAGAGCACCCAATAG 60.228 63.158 5.05 0.00 0.00 1.73
2355 3087 1.734465 CAAAGTCTGACGGCCAATCTC 59.266 52.381 2.24 0.00 0.00 2.75
2390 3122 2.916735 GTCGACGTGACGTTTTGAAT 57.083 45.000 13.44 0.00 41.37 2.57
2408 3140 2.356194 GTGTACCGCGGGAAACGT 60.356 61.111 31.76 9.87 46.52 3.99
2648 3380 1.986378 CGAGCTTGTAGTTGACCTTCG 59.014 52.381 0.00 0.00 0.00 3.79
2814 3546 1.620323 TCATGGTAGATGCCGATGAGG 59.380 52.381 0.00 0.00 44.97 3.86
2874 3607 6.761242 GGGCCCTTTTGCTAGTAAATAAAATG 59.239 38.462 17.04 0.00 0.00 2.32
2875 3608 6.406512 CGGGCCCTTTTGCTAGTAAATAAAAT 60.407 38.462 22.43 0.00 0.00 1.82
2877 3610 4.399934 CGGGCCCTTTTGCTAGTAAATAAA 59.600 41.667 22.43 0.00 0.00 1.40
2880 3613 2.291346 ACGGGCCCTTTTGCTAGTAAAT 60.291 45.455 22.43 0.00 0.00 1.40
2882 3615 0.694196 ACGGGCCCTTTTGCTAGTAA 59.306 50.000 22.43 0.00 0.00 2.24
2883 3616 0.035820 CACGGGCCCTTTTGCTAGTA 60.036 55.000 22.43 0.00 0.00 1.82
2884 3617 1.303317 CACGGGCCCTTTTGCTAGT 60.303 57.895 22.43 4.23 0.00 2.57
2885 3618 2.700773 GCACGGGCCCTTTTGCTAG 61.701 63.158 25.28 9.64 32.00 3.42
2886 3619 2.675075 GCACGGGCCCTTTTGCTA 60.675 61.111 25.28 0.00 32.00 3.49
2889 3622 3.601685 AACGCACGGGCCCTTTTG 61.602 61.111 22.43 15.24 36.38 2.44
2890 3623 3.601685 CAACGCACGGGCCCTTTT 61.602 61.111 22.43 0.00 36.38 2.27
2904 3637 3.308530 CATTCTTTTCTCCCGTTGCAAC 58.691 45.455 19.89 19.89 0.00 4.17
2905 3638 2.288152 GCATTCTTTTCTCCCGTTGCAA 60.288 45.455 0.00 0.00 0.00 4.08
2906 3639 1.269448 GCATTCTTTTCTCCCGTTGCA 59.731 47.619 0.00 0.00 0.00 4.08
2907 3640 1.402852 GGCATTCTTTTCTCCCGTTGC 60.403 52.381 0.00 0.00 0.00 4.17
2908 3641 1.885887 TGGCATTCTTTTCTCCCGTTG 59.114 47.619 0.00 0.00 0.00 4.10
2909 3642 1.886542 GTGGCATTCTTTTCTCCCGTT 59.113 47.619 0.00 0.00 0.00 4.44
2910 3643 1.202879 TGTGGCATTCTTTTCTCCCGT 60.203 47.619 0.00 0.00 0.00 5.28
2911 3644 1.200020 GTGTGGCATTCTTTTCTCCCG 59.800 52.381 0.00 0.00 0.00 5.14
2912 3645 1.200020 CGTGTGGCATTCTTTTCTCCC 59.800 52.381 0.00 0.00 0.00 4.30
2913 3646 1.401539 GCGTGTGGCATTCTTTTCTCC 60.402 52.381 0.00 0.00 42.87 3.71
2914 3647 1.969103 GCGTGTGGCATTCTTTTCTC 58.031 50.000 0.00 0.00 42.87 2.87
2954 3687 9.199982 GCCGTAGCTACAAATACTCAAATTATA 57.800 33.333 23.21 0.00 35.50 0.98
2955 3688 7.172703 GGCCGTAGCTACAAATACTCAAATTAT 59.827 37.037 23.21 0.00 39.73 1.28
2956 3689 6.480981 GGCCGTAGCTACAAATACTCAAATTA 59.519 38.462 23.21 0.00 39.73 1.40
2957 3690 5.296035 GGCCGTAGCTACAAATACTCAAATT 59.704 40.000 23.21 0.00 39.73 1.82
2958 3691 4.814771 GGCCGTAGCTACAAATACTCAAAT 59.185 41.667 23.21 0.00 39.73 2.32
2959 3692 4.186159 GGCCGTAGCTACAAATACTCAAA 58.814 43.478 23.21 0.00 39.73 2.69
2960 3693 3.431207 GGGCCGTAGCTACAAATACTCAA 60.431 47.826 23.21 0.00 39.73 3.02
2961 3694 2.101917 GGGCCGTAGCTACAAATACTCA 59.898 50.000 23.21 0.00 39.73 3.41
2962 3695 2.101917 TGGGCCGTAGCTACAAATACTC 59.898 50.000 23.21 7.91 39.73 2.59
2963 3696 2.112998 TGGGCCGTAGCTACAAATACT 58.887 47.619 23.21 0.00 39.73 2.12
2964 3697 2.607631 TGGGCCGTAGCTACAAATAC 57.392 50.000 23.21 9.63 39.73 1.89
2965 3698 3.272581 GTTTGGGCCGTAGCTACAAATA 58.727 45.455 23.21 3.01 42.90 1.40
2966 3699 2.089201 GTTTGGGCCGTAGCTACAAAT 58.911 47.619 23.21 0.00 42.90 2.32
2967 3700 1.202782 TGTTTGGGCCGTAGCTACAAA 60.203 47.619 23.21 12.61 40.72 2.83
2968 3701 0.397187 TGTTTGGGCCGTAGCTACAA 59.603 50.000 23.21 7.13 39.73 2.41
2969 3702 0.397187 TTGTTTGGGCCGTAGCTACA 59.603 50.000 23.21 0.03 39.73 2.74
2970 3703 1.467342 CTTTGTTTGGGCCGTAGCTAC 59.533 52.381 14.19 14.19 39.73 3.58
2971 3704 1.348366 TCTTTGTTTGGGCCGTAGCTA 59.652 47.619 0.00 0.00 39.73 3.32
2972 3705 0.109723 TCTTTGTTTGGGCCGTAGCT 59.890 50.000 0.00 0.00 39.73 3.32
2973 3706 1.135402 CATCTTTGTTTGGGCCGTAGC 60.135 52.381 0.00 0.00 38.76 3.58
2974 3707 1.472480 CCATCTTTGTTTGGGCCGTAG 59.528 52.381 0.00 0.00 0.00 3.51
2975 3708 1.202952 ACCATCTTTGTTTGGGCCGTA 60.203 47.619 0.00 0.00 37.32 4.02
2976 3709 0.469144 ACCATCTTTGTTTGGGCCGT 60.469 50.000 0.00 0.00 37.32 5.68
2977 3710 0.678950 AACCATCTTTGTTTGGGCCG 59.321 50.000 0.00 0.00 37.32 6.13
2978 3711 2.928801 AAACCATCTTTGTTTGGGCC 57.071 45.000 0.00 0.00 37.32 5.80
2996 3729 4.379339 ACTTGCGCTTTTGTAGGAAAAA 57.621 36.364 9.73 0.00 0.00 1.94
2997 3730 4.142359 TGAACTTGCGCTTTTGTAGGAAAA 60.142 37.500 9.73 0.00 0.00 2.29
2998 3731 3.378742 TGAACTTGCGCTTTTGTAGGAAA 59.621 39.130 9.73 0.00 0.00 3.13
2999 3732 2.946329 TGAACTTGCGCTTTTGTAGGAA 59.054 40.909 9.73 0.00 0.00 3.36
3000 3733 2.566913 TGAACTTGCGCTTTTGTAGGA 58.433 42.857 9.73 0.00 0.00 2.94
3001 3734 3.003275 TCTTGAACTTGCGCTTTTGTAGG 59.997 43.478 9.73 0.00 0.00 3.18
3002 3735 4.209452 TCTTGAACTTGCGCTTTTGTAG 57.791 40.909 9.73 0.00 0.00 2.74
3003 3736 4.829064 ATCTTGAACTTGCGCTTTTGTA 57.171 36.364 9.73 0.00 0.00 2.41
3004 3737 3.715628 ATCTTGAACTTGCGCTTTTGT 57.284 38.095 9.73 0.00 0.00 2.83
3005 3738 3.426525 GGAATCTTGAACTTGCGCTTTTG 59.573 43.478 9.73 0.00 0.00 2.44
3006 3739 3.068024 TGGAATCTTGAACTTGCGCTTTT 59.932 39.130 9.73 0.00 0.00 2.27
3007 3740 2.622942 TGGAATCTTGAACTTGCGCTTT 59.377 40.909 9.73 0.00 0.00 3.51
3008 3741 2.030805 GTGGAATCTTGAACTTGCGCTT 60.031 45.455 9.73 0.00 0.00 4.68
3009 3742 1.537202 GTGGAATCTTGAACTTGCGCT 59.463 47.619 9.73 0.00 0.00 5.92
3010 3743 1.266718 TGTGGAATCTTGAACTTGCGC 59.733 47.619 0.00 0.00 0.00 6.09
3011 3744 3.058016 ACATGTGGAATCTTGAACTTGCG 60.058 43.478 0.00 0.00 0.00 4.85
3012 3745 4.217118 AGACATGTGGAATCTTGAACTTGC 59.783 41.667 1.15 0.00 0.00 4.01
3013 3746 5.954296 AGACATGTGGAATCTTGAACTTG 57.046 39.130 1.15 0.00 0.00 3.16
3014 3747 6.302269 AGAAGACATGTGGAATCTTGAACTT 58.698 36.000 1.15 0.00 32.83 2.66
3015 3748 5.874093 AGAAGACATGTGGAATCTTGAACT 58.126 37.500 1.15 0.00 32.83 3.01
3016 3749 7.856145 ATAGAAGACATGTGGAATCTTGAAC 57.144 36.000 1.15 0.00 32.83 3.18
3017 3750 8.868522 AAATAGAAGACATGTGGAATCTTGAA 57.131 30.769 1.15 0.00 32.83 2.69
3018 3751 9.958180 TTAAATAGAAGACATGTGGAATCTTGA 57.042 29.630 1.15 0.00 32.83 3.02
3021 3754 9.739276 TGTTTAAATAGAAGACATGTGGAATCT 57.261 29.630 1.15 3.84 0.00 2.40
3024 3757 8.792633 CCTTGTTTAAATAGAAGACATGTGGAA 58.207 33.333 1.15 0.00 0.00 3.53
3025 3758 7.094377 GCCTTGTTTAAATAGAAGACATGTGGA 60.094 37.037 1.15 0.00 0.00 4.02
3026 3759 7.029563 GCCTTGTTTAAATAGAAGACATGTGG 58.970 38.462 1.15 0.00 0.00 4.17
3027 3760 7.820648 AGCCTTGTTTAAATAGAAGACATGTG 58.179 34.615 1.15 0.00 0.00 3.21
3028 3761 8.299570 CAAGCCTTGTTTAAATAGAAGACATGT 58.700 33.333 0.00 0.00 0.00 3.21
3029 3762 7.274250 GCAAGCCTTGTTTAAATAGAAGACATG 59.726 37.037 6.28 0.00 0.00 3.21
3030 3763 7.039784 TGCAAGCCTTGTTTAAATAGAAGACAT 60.040 33.333 6.28 0.00 0.00 3.06
3031 3764 6.264292 TGCAAGCCTTGTTTAAATAGAAGACA 59.736 34.615 6.28 0.00 0.00 3.41
3032 3765 6.677913 TGCAAGCCTTGTTTAAATAGAAGAC 58.322 36.000 6.28 0.00 0.00 3.01
3033 3766 6.892658 TGCAAGCCTTGTTTAAATAGAAGA 57.107 33.333 6.28 0.00 0.00 2.87
3034 3767 7.092716 ACATGCAAGCCTTGTTTAAATAGAAG 58.907 34.615 6.28 0.00 0.00 2.85
3035 3768 6.991938 ACATGCAAGCCTTGTTTAAATAGAA 58.008 32.000 6.28 0.00 0.00 2.10
3036 3769 6.588719 ACATGCAAGCCTTGTTTAAATAGA 57.411 33.333 6.28 0.00 0.00 1.98
3037 3770 7.761409 TCTACATGCAAGCCTTGTTTAAATAG 58.239 34.615 6.28 2.13 34.15 1.73
3038 3771 7.695480 TCTACATGCAAGCCTTGTTTAAATA 57.305 32.000 6.28 0.00 34.15 1.40
3039 3772 6.588719 TCTACATGCAAGCCTTGTTTAAAT 57.411 33.333 6.28 0.00 34.15 1.40
3040 3773 6.588719 ATCTACATGCAAGCCTTGTTTAAA 57.411 33.333 6.28 0.00 34.15 1.52
3041 3774 6.588719 AATCTACATGCAAGCCTTGTTTAA 57.411 33.333 6.28 0.00 34.15 1.52
3042 3775 6.588719 AAATCTACATGCAAGCCTTGTTTA 57.411 33.333 6.28 0.00 34.15 2.01
3043 3776 5.473066 AAATCTACATGCAAGCCTTGTTT 57.527 34.783 6.28 0.00 34.15 2.83
3044 3777 6.588719 TTAAATCTACATGCAAGCCTTGTT 57.411 33.333 6.28 0.00 34.15 2.83
3045 3778 6.780457 ATTAAATCTACATGCAAGCCTTGT 57.220 33.333 6.28 0.00 36.06 3.16
3046 3779 6.852853 CGTATTAAATCTACATGCAAGCCTTG 59.147 38.462 0.00 0.00 0.00 3.61
3047 3780 6.542370 ACGTATTAAATCTACATGCAAGCCTT 59.458 34.615 0.00 0.00 0.00 4.35
3048 3781 6.055588 ACGTATTAAATCTACATGCAAGCCT 58.944 36.000 0.00 0.00 0.00 4.58
3049 3782 6.300354 ACGTATTAAATCTACATGCAAGCC 57.700 37.500 0.00 0.00 0.00 4.35
3069 3802 9.193133 CATTATCCGTCTTTCTTTCATATACGT 57.807 33.333 0.00 0.00 0.00 3.57
3070 3803 8.162880 GCATTATCCGTCTTTCTTTCATATACG 58.837 37.037 0.00 0.00 0.00 3.06
3071 3804 8.988934 TGCATTATCCGTCTTTCTTTCATATAC 58.011 33.333 0.00 0.00 0.00 1.47
3072 3805 8.988934 GTGCATTATCCGTCTTTCTTTCATATA 58.011 33.333 0.00 0.00 0.00 0.86
3073 3806 7.716998 AGTGCATTATCCGTCTTTCTTTCATAT 59.283 33.333 0.00 0.00 0.00 1.78
3074 3807 7.011389 CAGTGCATTATCCGTCTTTCTTTCATA 59.989 37.037 0.00 0.00 0.00 2.15
3075 3808 5.882557 AGTGCATTATCCGTCTTTCTTTCAT 59.117 36.000 0.00 0.00 0.00 2.57
3076 3809 5.122239 CAGTGCATTATCCGTCTTTCTTTCA 59.878 40.000 0.00 0.00 0.00 2.69
3077 3810 5.122396 ACAGTGCATTATCCGTCTTTCTTTC 59.878 40.000 0.00 0.00 0.00 2.62
3078 3811 5.003804 ACAGTGCATTATCCGTCTTTCTTT 58.996 37.500 0.00 0.00 0.00 2.52
3079 3812 4.579869 ACAGTGCATTATCCGTCTTTCTT 58.420 39.130 0.00 0.00 0.00 2.52
3080 3813 4.207891 ACAGTGCATTATCCGTCTTTCT 57.792 40.909 0.00 0.00 0.00 2.52
3081 3814 4.391830 TCAACAGTGCATTATCCGTCTTTC 59.608 41.667 0.00 0.00 0.00 2.62
3082 3815 4.323417 TCAACAGTGCATTATCCGTCTTT 58.677 39.130 0.00 0.00 0.00 2.52
3083 3816 3.937814 TCAACAGTGCATTATCCGTCTT 58.062 40.909 0.00 0.00 0.00 3.01
3084 3817 3.610040 TCAACAGTGCATTATCCGTCT 57.390 42.857 0.00 0.00 0.00 4.18
3085 3818 4.882671 AATCAACAGTGCATTATCCGTC 57.117 40.909 0.00 0.00 0.00 4.79
3086 3819 6.112734 TCTTAATCAACAGTGCATTATCCGT 58.887 36.000 0.00 0.00 0.00 4.69
3087 3820 6.603237 TCTTAATCAACAGTGCATTATCCG 57.397 37.500 0.00 0.00 0.00 4.18
3088 3821 7.380602 GCAATCTTAATCAACAGTGCATTATCC 59.619 37.037 0.00 0.00 0.00 2.59
3089 3822 7.916977 TGCAATCTTAATCAACAGTGCATTATC 59.083 33.333 0.00 0.00 35.93 1.75
3090 3823 7.703621 GTGCAATCTTAATCAACAGTGCATTAT 59.296 33.333 0.00 0.00 42.18 1.28
3091 3824 7.028962 GTGCAATCTTAATCAACAGTGCATTA 58.971 34.615 0.00 0.00 42.18 1.90
3092 3825 5.865552 GTGCAATCTTAATCAACAGTGCATT 59.134 36.000 0.00 0.00 42.18 3.56
3093 3826 5.184479 AGTGCAATCTTAATCAACAGTGCAT 59.816 36.000 0.00 0.00 42.18 3.96
3094 3827 4.520111 AGTGCAATCTTAATCAACAGTGCA 59.480 37.500 0.00 0.00 38.35 4.57
3095 3828 5.051891 AGTGCAATCTTAATCAACAGTGC 57.948 39.130 0.00 0.00 0.00 4.40
3096 3829 6.492007 AGAGTGCAATCTTAATCAACAGTG 57.508 37.500 11.63 0.00 0.00 3.66
3097 3830 7.615403 TCTAGAGTGCAATCTTAATCAACAGT 58.385 34.615 23.21 0.00 0.00 3.55
3098 3831 8.659925 ATCTAGAGTGCAATCTTAATCAACAG 57.340 34.615 23.21 10.77 0.00 3.16
3099 3832 8.886719 CAATCTAGAGTGCAATCTTAATCAACA 58.113 33.333 23.21 0.00 0.00 3.33
3100 3833 8.887717 ACAATCTAGAGTGCAATCTTAATCAAC 58.112 33.333 23.21 0.00 0.00 3.18
3202 3935 9.589111 AAACCGTAACTTCAAATTTAACATGTT 57.411 25.926 16.68 16.68 0.00 2.71
3213 3946 9.932207 TCATATCTTCTAAACCGTAACTTCAAA 57.068 29.630 0.00 0.00 0.00 2.69
3214 3947 9.582431 CTCATATCTTCTAAACCGTAACTTCAA 57.418 33.333 0.00 0.00 0.00 2.69
3215 3948 8.746530 ACTCATATCTTCTAAACCGTAACTTCA 58.253 33.333 0.00 0.00 0.00 3.02
3262 3995 9.132923 TGTTTTTGACATTAAACCCATAGTACA 57.867 29.630 0.00 0.00 34.21 2.90
3306 4039 9.457436 AGGTATTTTTAGTCCGTCATGTTATTT 57.543 29.630 0.00 0.00 0.00 1.40
3310 4043 9.457436 AAATAGGTATTTTTAGTCCGTCATGTT 57.543 29.630 0.00 0.00 32.28 2.71
3311 4044 9.106070 GAAATAGGTATTTTTAGTCCGTCATGT 57.894 33.333 0.00 0.00 36.13 3.21
3312 4045 9.326413 AGAAATAGGTATTTTTAGTCCGTCATG 57.674 33.333 0.00 0.00 36.13 3.07
3313 4046 9.901172 AAGAAATAGGTATTTTTAGTCCGTCAT 57.099 29.630 0.00 0.00 36.13 3.06
3314 4047 9.729281 AAAGAAATAGGTATTTTTAGTCCGTCA 57.271 29.630 0.00 0.00 36.13 4.35
3384 4117 1.355720 CAGAGGGGGTCATCCTGTTTT 59.644 52.381 0.00 0.00 34.21 2.43
3387 4120 1.997874 GCAGAGGGGGTCATCCTGT 60.998 63.158 0.00 0.00 34.21 4.00
3388 4121 1.351080 ATGCAGAGGGGGTCATCCTG 61.351 60.000 0.00 0.00 34.21 3.86
3423 4159 4.510711 ACAACATCTCTTCGCATCATCATC 59.489 41.667 0.00 0.00 0.00 2.92
3426 4162 4.330894 TCAACAACATCTCTTCGCATCATC 59.669 41.667 0.00 0.00 0.00 2.92
3441 4177 6.049149 AGAAGAAGAAGACGAATCAACAACA 58.951 36.000 0.00 0.00 0.00 3.33
3452 4188 3.738282 CACACCTGAAGAAGAAGAAGACG 59.262 47.826 0.00 0.00 0.00 4.18
3568 4316 8.893727 ACATTACAATTACCAGCAGTTAAGATC 58.106 33.333 0.00 0.00 0.00 2.75
3583 4331 7.922278 GTCAGGGATGTACGTACATTACAATTA 59.078 37.037 34.92 18.35 46.20 1.40
3626 4378 1.074775 GCAACTGATCCACCCACCA 59.925 57.895 0.00 0.00 0.00 4.17
3641 4393 1.918262 AGGATGTCCTCCATCTTGCAA 59.082 47.619 0.00 0.00 44.77 4.08
3722 4474 4.138665 TCCACCCGCAATAGGACA 57.861 55.556 0.00 0.00 0.00 4.02
3728 4480 1.603455 CACCTTGTCCACCCGCAAT 60.603 57.895 0.00 0.00 0.00 3.56
3729 4481 2.203280 CACCTTGTCCACCCGCAA 60.203 61.111 0.00 0.00 0.00 4.85
3751 4503 1.526887 GTCTTCCATCGCATCCCCA 59.473 57.895 0.00 0.00 0.00 4.96
3761 4513 0.752658 TCGCCATCATCGTCTTCCAT 59.247 50.000 0.00 0.00 0.00 3.41
3900 4658 0.321671 TCCTGAGTTGCAGTGCTACC 59.678 55.000 23.30 15.93 43.33 3.18
3901 4659 1.273606 TCTCCTGAGTTGCAGTGCTAC 59.726 52.381 20.18 20.18 43.33 3.58
3902 4660 1.632589 TCTCCTGAGTTGCAGTGCTA 58.367 50.000 17.60 5.78 43.33 3.49
3903 4661 0.982704 ATCTCCTGAGTTGCAGTGCT 59.017 50.000 17.60 0.00 43.33 4.40
3926 4726 7.821652 TCACAAGAAGTTGAAATAAACACACA 58.178 30.769 0.00 0.00 37.10 3.72
4239 5039 1.889530 AACTGCACTCCCTAGGCGTC 61.890 60.000 2.05 0.00 0.00 5.19
4246 5046 2.028130 CTCTCGATAACTGCACTCCCT 58.972 52.381 0.00 0.00 0.00 4.20
4292 6018 6.017400 ACTTTGAAGTTATGATGCCTGTTG 57.983 37.500 0.00 0.00 35.21 3.33
4294 6020 5.565439 GCAACTTTGAAGTTATGATGCCTGT 60.565 40.000 8.66 0.00 46.89 4.00
4349 6075 6.035866 GCTCTAAGATGGATAATCAGAATGCG 59.964 42.308 0.00 0.00 37.81 4.73
4353 6079 8.312564 CAGATGCTCTAAGATGGATAATCAGAA 58.687 37.037 0.00 0.00 37.81 3.02
4360 6086 5.512060 GGTTGCAGATGCTCTAAGATGGATA 60.512 44.000 6.35 0.00 42.66 2.59
4390 6116 0.795735 ACGTTTGCGGACGATACGAG 60.796 55.000 17.04 0.00 45.47 4.18
4414 6140 1.071699 TCACTAAACCTGGCTGTCCAC 59.928 52.381 0.00 0.00 37.47 4.02
4443 6169 2.758089 GCAGCTGGGTCGCATTCTG 61.758 63.158 17.12 12.21 0.00 3.02
4445 6171 2.747460 TGCAGCTGGGTCGCATTC 60.747 61.111 17.12 0.00 0.00 2.67
4457 6183 1.656441 CTGGTTTGAGGTGTGCAGC 59.344 57.895 0.00 0.00 0.00 5.25
4474 6200 2.706190 GACAACCCAGATGTATAGGGCT 59.294 50.000 0.00 0.00 46.88 5.19
4477 6203 2.037251 CCGGACAACCCAGATGTATAGG 59.963 54.545 0.00 0.00 34.14 2.57
4487 6213 2.969300 GAAAGGTGCCGGACAACCCA 62.969 60.000 5.05 0.00 36.21 4.51
4488 6214 2.203437 AAAGGTGCCGGACAACCC 60.203 61.111 5.05 1.25 36.21 4.11
4520 6246 2.549082 CTCCCCATATCAGCTCCAGAT 58.451 52.381 0.00 0.00 0.00 2.90
4554 6280 2.672961 TTGTCGGATCTGATGTGACC 57.327 50.000 7.68 0.00 0.00 4.02
4559 6285 1.667724 GCTGGTTTGTCGGATCTGATG 59.332 52.381 7.68 0.00 0.00 3.07
4577 6303 0.849094 TGGACTATTTGGGTGGGGCT 60.849 55.000 0.00 0.00 0.00 5.19
4581 6307 2.595750 TTGGTGGACTATTTGGGTGG 57.404 50.000 0.00 0.00 0.00 4.61
4606 6349 5.538053 TGGTGAGCAATTCAAACTAATCCAA 59.462 36.000 0.00 0.00 37.61 3.53
4611 6355 7.176515 ACATATGTGGTGAGCAATTCAAACTAA 59.823 33.333 7.78 0.00 37.61 2.24
4668 6412 1.241990 CGACAGACACGGGAAGAGGA 61.242 60.000 0.00 0.00 0.00 3.71
4683 6427 0.108520 GCGGTAGGAAATGGACGACA 60.109 55.000 0.00 0.00 0.00 4.35
4687 6431 0.529992 CTCGGCGGTAGGAAATGGAC 60.530 60.000 7.21 0.00 0.00 4.02
4702 6446 3.358076 GAGGTCGGTGAAGGCTCGG 62.358 68.421 0.00 0.00 0.00 4.63
4703 6447 2.182030 GAGGTCGGTGAAGGCTCG 59.818 66.667 0.00 0.00 0.00 5.03
4714 6458 4.452733 GACCAAGGGCGGAGGTCG 62.453 72.222 5.34 0.00 42.02 4.79
4745 6489 2.030981 GGAGACGTTATCTAAGAGGGCG 60.031 54.545 0.00 0.00 38.00 6.13
4761 6505 0.816373 GGGACAGGTTACTCGGAGAC 59.184 60.000 12.86 0.00 0.00 3.36
4772 6516 3.612681 CGACGGTGTGGGACAGGT 61.613 66.667 0.00 0.00 41.80 4.00
4781 6525 2.874648 ATCATGCATGCCGACGGTGT 62.875 55.000 22.25 1.10 0.00 4.16
4805 6549 2.187946 GCCCCACAGACTCCATCG 59.812 66.667 0.00 0.00 0.00 3.84
4833 6577 2.559330 CGCGTTGCAACTTACCCC 59.441 61.111 26.09 7.41 0.00 4.95
4838 6582 0.238289 CATTCTCCGCGTTGCAACTT 59.762 50.000 26.09 0.00 0.00 2.66
4847 6591 2.508891 GCAGACGACATTCTCCGCG 61.509 63.158 0.00 0.00 0.00 6.46
4851 6595 0.526524 CTCCCGCAGACGACATTCTC 60.527 60.000 0.00 0.00 43.93 2.87
4865 6609 4.162690 CTTCCTTCGCCCCTCCCG 62.163 72.222 0.00 0.00 0.00 5.14
4868 6612 0.459759 CGTTACTTCCTTCGCCCCTC 60.460 60.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.