Multiple sequence alignment - TraesCS4D01G150100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G150100 chr4D 100.000 4914 0 0 1 4914 165897053 165901966 0.000000e+00 9075.0
1 TraesCS4D01G150100 chr4D 97.537 203 5 0 1 203 165890369 165890571 1.010000e-91 348.0
2 TraesCS4D01G150100 chr4D 97.297 74 2 0 4197 4270 165901175 165901248 5.160000e-25 126.0
3 TraesCS4D01G150100 chr4D 97.297 74 2 0 4123 4196 165901249 165901322 5.160000e-25 126.0
4 TraesCS4D01G150100 chr4B 97.439 3904 80 7 203 4097 152090235 152086343 0.000000e+00 6637.0
5 TraesCS4D01G150100 chr4B 89.367 837 44 9 4097 4914 152079577 152078767 0.000000e+00 1011.0
6 TraesCS4D01G150100 chr4B 94.366 71 4 0 4126 4196 152079494 152079424 5.200000e-20 110.0
7 TraesCS4D01G150100 chr4B 95.000 60 3 0 4197 4256 152079551 152079492 1.460000e-15 95.3
8 TraesCS4D01G150100 chr4A 95.995 1748 58 3 690 2426 413299416 413301162 0.000000e+00 2830.0
9 TraesCS4D01G150100 chr4A 96.010 1253 49 1 2761 4013 413306806 413308057 0.000000e+00 2036.0
10 TraesCS4D01G150100 chr4A 94.286 490 28 0 203 692 413297491 413297980 0.000000e+00 750.0
11 TraesCS4D01G150100 chr4A 92.771 166 10 1 2469 2634 413301163 413301326 6.360000e-59 239.0
12 TraesCS4D01G150100 chr4A 98.496 133 1 1 2632 2764 413301407 413301538 2.960000e-57 233.0
13 TraesCS4D01G150100 chr4A 94.400 125 6 1 3905 4029 413308058 413308181 1.810000e-44 191.0
14 TraesCS4D01G150100 chr4A 98.958 96 1 0 4197 4292 413328368 413328463 6.540000e-39 172.0
15 TraesCS4D01G150100 chr4A 96.000 100 4 0 4097 4196 413328342 413328441 3.940000e-36 163.0
16 TraesCS4D01G150100 chr4A 97.333 75 1 1 4016 4090 413309941 413310014 5.160000e-25 126.0
17 TraesCS4D01G150100 chrUn 95.395 152 4 1 2727 2878 316646940 316647088 6.360000e-59 239.0
18 TraesCS4D01G150100 chr3B 95.395 152 4 1 2727 2878 35039524 35039672 6.360000e-59 239.0
19 TraesCS4D01G150100 chr3B 95.395 152 4 1 2727 2878 35120710 35120858 6.360000e-59 239.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G150100 chr4D 165897053 165901966 4913 False 3109.000000 9075 98.198000 1 4914 3 chr4D.!!$F2 4913
1 TraesCS4D01G150100 chr4B 152086343 152090235 3892 True 6637.000000 6637 97.439000 203 4097 1 chr4B.!!$R1 3894
2 TraesCS4D01G150100 chr4B 152078767 152079577 810 True 405.433333 1011 92.911000 4097 4914 3 chr4B.!!$R2 817
3 TraesCS4D01G150100 chr4A 413297491 413301538 4047 False 1013.000000 2830 95.387000 203 2764 4 chr4A.!!$F1 2561
4 TraesCS4D01G150100 chr4A 413306806 413310014 3208 False 784.333333 2036 95.914333 2761 4090 3 chr4A.!!$F2 1329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.035725 GGCGGCTACCTAACCACTTT 60.036 55.000 0.00 0.0 0.00 2.66 F
243 244 0.757935 TCCAGCACCGATACCCTACC 60.758 60.000 0.00 0.0 0.00 3.18 F
252 253 1.669999 GATACCCTACCGCACCACGT 61.670 60.000 0.00 0.0 41.42 4.49 F
261 262 2.261671 GCACCACGTCACCGAGAT 59.738 61.111 0.00 0.0 37.88 2.75 F
2428 3888 1.630369 TCTGTACATTGCAAGCCTCCT 59.370 47.619 4.94 0.0 0.00 3.69 F
3554 5100 0.179062 GAGCATGATCCGGCTGAAGT 60.179 55.000 12.40 0.0 41.22 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 2577 1.577328 AATTTGACGCACGCTCCTGG 61.577 55.000 0.00 0.00 0.00 4.45 R
2232 3690 5.814764 AATAGCAAGAGAAGCATGACTTG 57.185 39.130 0.00 0.00 39.29 3.16 R
2428 3888 3.660501 AACTGTCAGCGATGTGTAGAA 57.339 42.857 0.00 0.00 0.00 2.10 R
2497 3957 5.283247 CGATCTACCGAATTCGTATAACTGC 59.717 44.000 25.10 7.70 37.74 4.40 R
3628 5174 0.035056 CCTTCTCCGACTTGGCCAAT 60.035 55.000 20.85 9.47 37.80 3.16 R
4769 8216 0.247460 TCAGCAAGATGACGAGGTGG 59.753 55.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.863407 GAGGCTACTTCAAGGGGTG 57.137 57.895 0.00 0.00 0.00 4.61
19 20 0.393132 GAGGCTACTTCAAGGGGTGC 60.393 60.000 0.00 0.00 0.00 5.01
20 21 1.745489 GGCTACTTCAAGGGGTGCG 60.745 63.158 0.00 0.00 0.00 5.34
21 22 2.399356 GCTACTTCAAGGGGTGCGC 61.399 63.158 0.00 0.00 0.00 6.09
22 23 1.296715 CTACTTCAAGGGGTGCGCT 59.703 57.895 9.73 0.00 0.00 5.92
23 24 0.741221 CTACTTCAAGGGGTGCGCTC 60.741 60.000 9.73 4.47 0.00 5.03
24 25 2.501223 TACTTCAAGGGGTGCGCTCG 62.501 60.000 9.73 0.00 0.00 5.03
25 26 4.697756 TTCAAGGGGTGCGCTCGG 62.698 66.667 9.73 0.00 0.00 4.63
35 36 4.266070 GCGCTCGGAGGCATCGTA 62.266 66.667 7.20 0.00 0.00 3.43
36 37 2.645567 CGCTCGGAGGCATCGTAT 59.354 61.111 7.20 0.00 0.00 3.06
37 38 1.442857 CGCTCGGAGGCATCGTATC 60.443 63.158 7.20 0.00 0.00 2.24
38 39 1.080434 GCTCGGAGGCATCGTATCC 60.080 63.158 7.20 0.00 0.00 2.59
39 40 1.806461 GCTCGGAGGCATCGTATCCA 61.806 60.000 7.20 0.00 32.31 3.41
40 41 0.242286 CTCGGAGGCATCGTATCCAG 59.758 60.000 0.00 0.00 32.31 3.86
41 42 0.467474 TCGGAGGCATCGTATCCAGT 60.467 55.000 0.00 0.00 32.31 4.00
42 43 0.319040 CGGAGGCATCGTATCCAGTG 60.319 60.000 0.00 0.00 32.31 3.66
43 44 0.601311 GGAGGCATCGTATCCAGTGC 60.601 60.000 0.00 0.00 36.88 4.40
44 45 0.104855 GAGGCATCGTATCCAGTGCA 59.895 55.000 0.00 0.00 39.27 4.57
45 46 0.761187 AGGCATCGTATCCAGTGCAT 59.239 50.000 0.00 0.00 39.27 3.96
46 47 1.151668 GGCATCGTATCCAGTGCATC 58.848 55.000 0.00 0.00 39.27 3.91
47 48 1.541015 GGCATCGTATCCAGTGCATCA 60.541 52.381 0.00 0.00 39.27 3.07
48 49 2.212652 GCATCGTATCCAGTGCATCAA 58.787 47.619 0.00 0.00 37.52 2.57
49 50 2.613595 GCATCGTATCCAGTGCATCAAA 59.386 45.455 0.00 0.00 37.52 2.69
50 51 3.303593 GCATCGTATCCAGTGCATCAAAG 60.304 47.826 0.00 0.00 37.52 2.77
51 52 2.905075 TCGTATCCAGTGCATCAAAGG 58.095 47.619 0.00 0.00 0.00 3.11
52 53 2.499693 TCGTATCCAGTGCATCAAAGGA 59.500 45.455 0.00 0.00 0.00 3.36
53 54 3.055458 TCGTATCCAGTGCATCAAAGGAA 60.055 43.478 0.00 0.00 31.17 3.36
54 55 3.689161 CGTATCCAGTGCATCAAAGGAAA 59.311 43.478 0.00 0.00 31.17 3.13
55 56 4.437390 CGTATCCAGTGCATCAAAGGAAAC 60.437 45.833 0.00 0.00 31.17 2.78
56 57 1.879380 TCCAGTGCATCAAAGGAAACG 59.121 47.619 0.00 0.00 0.00 3.60
57 58 1.068333 CCAGTGCATCAAAGGAAACGG 60.068 52.381 0.00 0.00 0.00 4.44
58 59 0.598065 AGTGCATCAAAGGAAACGGC 59.402 50.000 0.00 0.00 0.00 5.68
59 60 0.313672 GTGCATCAAAGGAAACGGCA 59.686 50.000 0.00 0.00 0.00 5.69
60 61 0.313672 TGCATCAAAGGAAACGGCAC 59.686 50.000 0.00 0.00 0.00 5.01
61 62 0.388520 GCATCAAAGGAAACGGCACC 60.389 55.000 0.00 0.00 0.00 5.01
62 63 0.109781 CATCAAAGGAAACGGCACCG 60.110 55.000 7.71 7.71 46.03 4.94
63 64 1.241315 ATCAAAGGAAACGGCACCGG 61.241 55.000 14.51 0.00 44.69 5.28
64 65 3.292159 AAAGGAAACGGCACCGGC 61.292 61.111 14.51 2.27 44.69 6.13
74 75 4.151582 GCACCGGCGGCTACCTAA 62.152 66.667 28.71 0.00 0.00 2.69
75 76 2.202837 CACCGGCGGCTACCTAAC 60.203 66.667 28.71 0.00 0.00 2.34
76 77 3.464494 ACCGGCGGCTACCTAACC 61.464 66.667 28.71 0.00 0.00 2.85
77 78 3.463585 CCGGCGGCTACCTAACCA 61.464 66.667 15.42 0.00 0.00 3.67
78 79 2.202837 CGGCGGCTACCTAACCAC 60.203 66.667 7.61 0.00 0.00 4.16
79 80 2.718073 CGGCGGCTACCTAACCACT 61.718 63.158 7.61 0.00 0.00 4.00
80 81 1.600638 GGCGGCTACCTAACCACTT 59.399 57.895 0.00 0.00 0.00 3.16
81 82 0.035725 GGCGGCTACCTAACCACTTT 60.036 55.000 0.00 0.00 0.00 2.66
82 83 1.366679 GCGGCTACCTAACCACTTTC 58.633 55.000 0.00 0.00 0.00 2.62
83 84 2.010544 GCGGCTACCTAACCACTTTCC 61.011 57.143 0.00 0.00 0.00 3.13
84 85 1.406477 CGGCTACCTAACCACTTTCCC 60.406 57.143 0.00 0.00 0.00 3.97
85 86 1.064906 GGCTACCTAACCACTTTCCCC 60.065 57.143 0.00 0.00 0.00 4.81
86 87 1.914108 GCTACCTAACCACTTTCCCCT 59.086 52.381 0.00 0.00 0.00 4.79
87 88 2.307980 GCTACCTAACCACTTTCCCCTT 59.692 50.000 0.00 0.00 0.00 3.95
88 89 3.245158 GCTACCTAACCACTTTCCCCTTT 60.245 47.826 0.00 0.00 0.00 3.11
89 90 3.520691 ACCTAACCACTTTCCCCTTTC 57.479 47.619 0.00 0.00 0.00 2.62
90 91 2.109480 ACCTAACCACTTTCCCCTTTCC 59.891 50.000 0.00 0.00 0.00 3.13
91 92 2.378886 CCTAACCACTTTCCCCTTTCCT 59.621 50.000 0.00 0.00 0.00 3.36
92 93 2.677542 AACCACTTTCCCCTTTCCTC 57.322 50.000 0.00 0.00 0.00 3.71
93 94 0.778083 ACCACTTTCCCCTTTCCTCC 59.222 55.000 0.00 0.00 0.00 4.30
94 95 1.076438 CCACTTTCCCCTTTCCTCCT 58.924 55.000 0.00 0.00 0.00 3.69
95 96 1.004862 CCACTTTCCCCTTTCCTCCTC 59.995 57.143 0.00 0.00 0.00 3.71
96 97 1.988846 CACTTTCCCCTTTCCTCCTCT 59.011 52.381 0.00 0.00 0.00 3.69
97 98 2.376855 CACTTTCCCCTTTCCTCCTCTT 59.623 50.000 0.00 0.00 0.00 2.85
98 99 3.587506 CACTTTCCCCTTTCCTCCTCTTA 59.412 47.826 0.00 0.00 0.00 2.10
99 100 3.847184 ACTTTCCCCTTTCCTCCTCTTAG 59.153 47.826 0.00 0.00 0.00 2.18
100 101 3.866515 TTCCCCTTTCCTCCTCTTAGA 57.133 47.619 0.00 0.00 0.00 2.10
101 102 3.866515 TCCCCTTTCCTCCTCTTAGAA 57.133 47.619 0.00 0.00 0.00 2.10
102 103 3.451890 TCCCCTTTCCTCCTCTTAGAAC 58.548 50.000 0.00 0.00 0.00 3.01
103 104 2.506231 CCCCTTTCCTCCTCTTAGAACC 59.494 54.545 0.00 0.00 0.00 3.62
104 105 2.506231 CCCTTTCCTCCTCTTAGAACCC 59.494 54.545 0.00 0.00 0.00 4.11
105 106 3.455849 CCTTTCCTCCTCTTAGAACCCT 58.544 50.000 0.00 0.00 0.00 4.34
106 107 4.574390 CCCTTTCCTCCTCTTAGAACCCTA 60.574 50.000 0.00 0.00 0.00 3.53
107 108 4.651962 CCTTTCCTCCTCTTAGAACCCTAG 59.348 50.000 0.00 0.00 0.00 3.02
108 109 3.315880 TCCTCCTCTTAGAACCCTAGC 57.684 52.381 0.00 0.00 0.00 3.42
109 110 2.860041 TCCTCCTCTTAGAACCCTAGCT 59.140 50.000 0.00 0.00 0.00 3.32
110 111 3.117436 TCCTCCTCTTAGAACCCTAGCTC 60.117 52.174 0.00 0.00 0.00 4.09
111 112 3.227614 CTCCTCTTAGAACCCTAGCTCC 58.772 54.545 0.00 0.00 0.00 4.70
112 113 1.957877 CCTCTTAGAACCCTAGCTCCG 59.042 57.143 0.00 0.00 0.00 4.63
113 114 2.657143 CTCTTAGAACCCTAGCTCCGT 58.343 52.381 0.00 0.00 0.00 4.69
114 115 3.025262 CTCTTAGAACCCTAGCTCCGTT 58.975 50.000 0.00 0.00 0.00 4.44
115 116 3.022406 TCTTAGAACCCTAGCTCCGTTC 58.978 50.000 10.87 10.87 36.88 3.95
116 117 2.822707 TAGAACCCTAGCTCCGTTCT 57.177 50.000 20.43 20.43 46.04 3.01
117 118 1.939980 AGAACCCTAGCTCCGTTCTT 58.060 50.000 14.19 3.36 42.71 2.52
118 119 1.550976 AGAACCCTAGCTCCGTTCTTG 59.449 52.381 14.19 0.00 42.71 3.02
119 120 1.275573 GAACCCTAGCTCCGTTCTTGT 59.724 52.381 11.35 0.00 34.40 3.16
120 121 2.226962 ACCCTAGCTCCGTTCTTGTA 57.773 50.000 0.00 0.00 0.00 2.41
121 122 2.532843 ACCCTAGCTCCGTTCTTGTAA 58.467 47.619 0.00 0.00 0.00 2.41
122 123 3.105283 ACCCTAGCTCCGTTCTTGTAAT 58.895 45.455 0.00 0.00 0.00 1.89
123 124 3.132467 ACCCTAGCTCCGTTCTTGTAATC 59.868 47.826 0.00 0.00 0.00 1.75
124 125 3.372954 CCTAGCTCCGTTCTTGTAATCG 58.627 50.000 0.00 0.00 0.00 3.34
125 126 3.066342 CCTAGCTCCGTTCTTGTAATCGA 59.934 47.826 0.00 0.00 0.00 3.59
126 127 3.587797 AGCTCCGTTCTTGTAATCGAA 57.412 42.857 0.00 0.00 0.00 3.71
127 128 4.124851 AGCTCCGTTCTTGTAATCGAAT 57.875 40.909 0.00 0.00 0.00 3.34
128 129 4.504858 AGCTCCGTTCTTGTAATCGAATT 58.495 39.130 0.00 0.00 0.00 2.17
129 130 4.330074 AGCTCCGTTCTTGTAATCGAATTG 59.670 41.667 0.00 0.00 0.00 2.32
130 131 4.092968 GCTCCGTTCTTGTAATCGAATTGT 59.907 41.667 0.00 0.00 0.00 2.71
131 132 5.290158 GCTCCGTTCTTGTAATCGAATTGTA 59.710 40.000 0.00 0.00 0.00 2.41
132 133 6.183360 GCTCCGTTCTTGTAATCGAATTGTAA 60.183 38.462 0.00 0.00 0.00 2.41
133 134 7.465513 GCTCCGTTCTTGTAATCGAATTGTAAT 60.466 37.037 0.00 0.00 0.00 1.89
134 135 7.902032 TCCGTTCTTGTAATCGAATTGTAATC 58.098 34.615 0.00 0.00 0.00 1.75
135 136 6.839301 CCGTTCTTGTAATCGAATTGTAATCG 59.161 38.462 0.00 0.00 41.53 3.34
136 137 6.351000 CGTTCTTGTAATCGAATTGTAATCGC 59.649 38.462 0.00 0.00 40.04 4.58
137 138 6.281848 TCTTGTAATCGAATTGTAATCGCC 57.718 37.500 0.00 0.00 40.04 5.54
138 139 5.813157 TCTTGTAATCGAATTGTAATCGCCA 59.187 36.000 0.00 0.00 40.04 5.69
139 140 5.398176 TGTAATCGAATTGTAATCGCCAC 57.602 39.130 0.00 0.00 40.04 5.01
140 141 5.113383 TGTAATCGAATTGTAATCGCCACT 58.887 37.500 0.00 0.00 40.04 4.00
141 142 4.795970 AATCGAATTGTAATCGCCACTC 57.204 40.909 0.00 0.00 40.04 3.51
142 143 3.239587 TCGAATTGTAATCGCCACTCA 57.760 42.857 0.00 0.00 40.04 3.41
143 144 3.792401 TCGAATTGTAATCGCCACTCAT 58.208 40.909 0.00 0.00 40.04 2.90
144 145 4.939271 TCGAATTGTAATCGCCACTCATA 58.061 39.130 0.00 0.00 40.04 2.15
145 146 5.538118 TCGAATTGTAATCGCCACTCATAT 58.462 37.500 0.00 0.00 40.04 1.78
146 147 5.989168 TCGAATTGTAATCGCCACTCATATT 59.011 36.000 0.00 0.00 40.04 1.28
147 148 6.145534 TCGAATTGTAATCGCCACTCATATTC 59.854 38.462 0.00 0.00 40.04 1.75
148 149 5.845985 ATTGTAATCGCCACTCATATTCG 57.154 39.130 0.00 0.00 0.00 3.34
149 150 4.577834 TGTAATCGCCACTCATATTCGA 57.422 40.909 0.00 0.00 0.00 3.71
150 151 5.134202 TGTAATCGCCACTCATATTCGAT 57.866 39.130 0.00 0.00 41.00 3.59
151 152 5.161358 TGTAATCGCCACTCATATTCGATC 58.839 41.667 0.00 0.00 38.71 3.69
152 153 4.527509 AATCGCCACTCATATTCGATCT 57.472 40.909 0.00 0.00 38.71 2.75
153 154 3.288809 TCGCCACTCATATTCGATCTG 57.711 47.619 0.00 0.00 0.00 2.90
154 155 2.623416 TCGCCACTCATATTCGATCTGT 59.377 45.455 0.00 0.00 0.00 3.41
155 156 2.728318 CGCCACTCATATTCGATCTGTG 59.272 50.000 0.00 0.00 0.00 3.66
156 157 3.550842 CGCCACTCATATTCGATCTGTGA 60.551 47.826 0.00 0.00 0.00 3.58
157 158 3.986572 GCCACTCATATTCGATCTGTGAG 59.013 47.826 15.96 15.96 41.47 3.51
158 159 4.554292 CCACTCATATTCGATCTGTGAGG 58.446 47.826 19.45 11.90 40.35 3.86
159 160 4.279420 CCACTCATATTCGATCTGTGAGGA 59.721 45.833 19.45 0.00 40.35 3.71
160 161 5.221322 CCACTCATATTCGATCTGTGAGGAA 60.221 44.000 19.45 0.00 40.35 3.36
161 162 5.919707 CACTCATATTCGATCTGTGAGGAAG 59.080 44.000 19.45 10.04 40.35 3.46
162 163 5.830457 ACTCATATTCGATCTGTGAGGAAGA 59.170 40.000 19.45 0.00 40.35 2.87
163 164 6.493115 ACTCATATTCGATCTGTGAGGAAGAT 59.507 38.462 19.45 0.00 40.35 2.40
164 165 7.015098 ACTCATATTCGATCTGTGAGGAAGATT 59.985 37.037 19.45 2.88 40.35 2.40
165 166 7.150640 TCATATTCGATCTGTGAGGAAGATTG 58.849 38.462 0.00 0.00 37.03 2.67
166 167 3.170791 TCGATCTGTGAGGAAGATTGC 57.829 47.619 0.00 0.00 36.06 3.56
167 168 2.762887 TCGATCTGTGAGGAAGATTGCT 59.237 45.455 0.00 0.00 36.06 3.91
168 169 3.954258 TCGATCTGTGAGGAAGATTGCTA 59.046 43.478 0.00 0.00 36.06 3.49
169 170 4.037327 TCGATCTGTGAGGAAGATTGCTAG 59.963 45.833 0.00 0.00 36.06 3.42
170 171 3.533606 TCTGTGAGGAAGATTGCTAGC 57.466 47.619 8.10 8.10 0.00 3.42
171 172 3.102972 TCTGTGAGGAAGATTGCTAGCT 58.897 45.455 17.23 0.00 0.00 3.32
172 173 4.281657 TCTGTGAGGAAGATTGCTAGCTA 58.718 43.478 17.23 9.14 0.00 3.32
173 174 4.098654 TCTGTGAGGAAGATTGCTAGCTAC 59.901 45.833 17.23 7.24 0.00 3.58
174 175 4.026744 TGTGAGGAAGATTGCTAGCTACT 58.973 43.478 17.23 9.45 0.00 2.57
175 176 4.142071 TGTGAGGAAGATTGCTAGCTACTG 60.142 45.833 17.23 0.00 0.00 2.74
176 177 4.098654 GTGAGGAAGATTGCTAGCTACTGA 59.901 45.833 17.23 0.00 0.00 3.41
177 178 4.340666 TGAGGAAGATTGCTAGCTACTGAG 59.659 45.833 17.23 0.00 0.00 3.35
178 179 4.285863 AGGAAGATTGCTAGCTACTGAGT 58.714 43.478 17.23 0.00 0.00 3.41
179 180 4.099266 AGGAAGATTGCTAGCTACTGAGTG 59.901 45.833 17.23 0.00 0.00 3.51
180 181 4.098654 GGAAGATTGCTAGCTACTGAGTGA 59.901 45.833 17.23 0.00 0.00 3.41
181 182 4.916983 AGATTGCTAGCTACTGAGTGAG 57.083 45.455 17.23 0.00 0.00 3.51
182 183 4.531854 AGATTGCTAGCTACTGAGTGAGA 58.468 43.478 17.23 0.00 0.00 3.27
183 184 5.139727 AGATTGCTAGCTACTGAGTGAGAT 58.860 41.667 17.23 0.00 0.00 2.75
184 185 6.303054 AGATTGCTAGCTACTGAGTGAGATA 58.697 40.000 17.23 0.00 0.00 1.98
185 186 5.759506 TTGCTAGCTACTGAGTGAGATAC 57.240 43.478 17.23 0.00 0.00 2.24
186 187 5.042463 TGCTAGCTACTGAGTGAGATACT 57.958 43.478 17.23 0.00 44.02 2.12
187 188 6.176014 TGCTAGCTACTGAGTGAGATACTA 57.824 41.667 17.23 0.00 40.53 1.82
188 189 6.227522 TGCTAGCTACTGAGTGAGATACTAG 58.772 44.000 17.23 0.00 40.53 2.57
189 190 6.183361 TGCTAGCTACTGAGTGAGATACTAGT 60.183 42.308 17.23 0.00 40.53 2.57
190 191 6.147164 GCTAGCTACTGAGTGAGATACTAGTG 59.853 46.154 7.70 0.00 40.53 2.74
191 192 5.996644 AGCTACTGAGTGAGATACTAGTGT 58.003 41.667 5.39 0.00 40.53 3.55
192 193 5.820423 AGCTACTGAGTGAGATACTAGTGTG 59.180 44.000 5.39 0.00 40.53 3.82
193 194 4.974368 ACTGAGTGAGATACTAGTGTGC 57.026 45.455 5.39 0.00 40.53 4.57
194 195 3.697045 ACTGAGTGAGATACTAGTGTGCC 59.303 47.826 5.39 0.00 40.53 5.01
195 196 3.024547 TGAGTGAGATACTAGTGTGCCC 58.975 50.000 5.39 0.00 40.53 5.36
196 197 3.292460 GAGTGAGATACTAGTGTGCCCT 58.708 50.000 5.39 0.00 40.53 5.19
197 198 3.702045 GAGTGAGATACTAGTGTGCCCTT 59.298 47.826 5.39 0.00 40.53 3.95
198 199 4.868268 AGTGAGATACTAGTGTGCCCTTA 58.132 43.478 5.39 0.00 38.04 2.69
199 200 5.269991 AGTGAGATACTAGTGTGCCCTTAA 58.730 41.667 5.39 0.00 38.04 1.85
200 201 5.127356 AGTGAGATACTAGTGTGCCCTTAAC 59.873 44.000 5.39 0.00 38.04 2.01
201 202 5.020795 TGAGATACTAGTGTGCCCTTAACA 58.979 41.667 5.39 0.00 0.00 2.41
243 244 0.757935 TCCAGCACCGATACCCTACC 60.758 60.000 0.00 0.00 0.00 3.18
252 253 1.669999 GATACCCTACCGCACCACGT 61.670 60.000 0.00 0.00 41.42 4.49
254 255 3.687102 CCCTACCGCACCACGTCA 61.687 66.667 0.00 0.00 41.42 4.35
261 262 2.261671 GCACCACGTCACCGAGAT 59.738 61.111 0.00 0.00 37.88 2.75
358 359 5.336690 CCATTTAAGTTGGGGAGATGTTGTG 60.337 44.000 0.00 0.00 0.00 3.33
378 380 3.320826 GTGTGGTGATTAAGGTGCCTTTT 59.679 43.478 8.93 0.00 37.47 2.27
395 397 7.068716 GGTGCCTTTTGATCATTAGGATTACTT 59.931 37.037 21.73 0.00 36.00 2.24
553 555 4.036027 GTGGCTGATGACGATCATTTTCAT 59.964 41.667 0.00 0.00 37.20 2.57
562 564 5.165911 ACGATCATTTTCATGTGCAGATC 57.834 39.130 0.00 0.00 0.00 2.75
727 2167 8.111545 TGGTGACTAAGATTACTGGAGTACTAA 58.888 37.037 0.00 0.00 0.00 2.24
933 2373 4.916983 ACAAAGTGATGCTTAAAGTGCA 57.083 36.364 0.00 0.00 44.95 4.57
1137 2577 3.131396 CCAAGTTGGTACGCCAGATATC 58.869 50.000 14.21 0.00 46.91 1.63
1397 2855 4.095483 CGCTGAGAAAATGAAGGTTATGCT 59.905 41.667 0.00 0.00 0.00 3.79
1454 2912 4.065088 CGGTCAATTCTTGAAGGAACTGA 58.935 43.478 0.00 0.00 42.15 3.41
1609 3067 2.997986 CAGGCATTTTTGCATCCAAGTC 59.002 45.455 0.00 0.00 36.33 3.01
1656 3114 5.069914 TGCTGAGGTTTACTTGTACAAGAGA 59.930 40.000 36.14 22.51 40.79 3.10
2067 3525 3.009584 GTGAGGACTCAAAAGGGAGGAAT 59.990 47.826 3.18 0.00 41.85 3.01
2232 3690 4.509230 TCGCTCATTTTATCATGCTGAGTC 59.491 41.667 0.00 0.00 36.55 3.36
2428 3888 1.630369 TCTGTACATTGCAAGCCTCCT 59.370 47.619 4.94 0.00 0.00 3.69
2497 3957 7.522725 GGCATTCTCTGACAATACCATAAATGG 60.523 40.741 7.46 7.46 42.75 3.16
2521 3981 5.283247 GCAGTTATACGAATTCGGTAGATCG 59.717 44.000 29.79 14.90 44.95 3.69
2800 4346 2.203294 GTTGGGTGACGGTGCCTT 60.203 61.111 0.00 0.00 0.00 4.35
2948 4494 2.163815 GCTCTGTCATGCAGCTGAATTT 59.836 45.455 20.43 0.00 44.66 1.82
2974 4520 9.621629 TGTTATCTTCTGTGGTTCTTTTTCTAA 57.378 29.630 0.00 0.00 0.00 2.10
3030 4576 7.088272 AGTTTGGTGTCAGTTTTTCTGTTAAC 58.912 34.615 0.00 0.00 43.97 2.01
3032 4578 4.033019 GGTGTCAGTTTTTCTGTTAACGC 58.967 43.478 0.26 0.00 43.97 4.84
3554 5100 0.179062 GAGCATGATCCGGCTGAAGT 60.179 55.000 12.40 0.00 41.22 3.01
3824 5370 2.362369 ACCCCTGGCGACTCATCAG 61.362 63.158 0.00 0.00 0.00 2.90
3826 5372 1.406065 CCCCTGGCGACTCATCAGAT 61.406 60.000 0.00 0.00 0.00 2.90
3962 5616 8.243426 TGATACTTTCTGCCATGTAAATTGAAC 58.757 33.333 0.00 0.00 0.00 3.18
3966 5620 8.246180 ACTTTCTGCCATGTAAATTGAACTATG 58.754 33.333 0.00 0.00 0.00 2.23
3967 5621 6.135290 TCTGCCATGTAAATTGAACTATGC 57.865 37.500 0.00 0.00 0.00 3.14
4133 7562 2.076863 GTGATAGGCGAGCTTTGTTGT 58.923 47.619 0.00 0.00 0.00 3.32
4136 7565 1.234615 TAGGCGAGCTTTGTTGTGCC 61.235 55.000 0.00 0.00 42.76 5.01
4146 7575 0.387202 TTGTTGTGCCCGTTGATTGG 59.613 50.000 0.00 0.00 0.00 3.16
4179 7608 5.922739 TTATCAAGCATATGCAGTAACCG 57.077 39.130 28.62 9.11 45.16 4.44
4180 7609 3.260475 TCAAGCATATGCAGTAACCGT 57.740 42.857 28.62 3.13 45.16 4.83
4181 7610 3.605634 TCAAGCATATGCAGTAACCGTT 58.394 40.909 28.62 9.42 45.16 4.44
4182 7611 3.373748 TCAAGCATATGCAGTAACCGTTG 59.626 43.478 28.62 19.89 45.16 4.10
4183 7612 2.985896 AGCATATGCAGTAACCGTTGT 58.014 42.857 28.62 1.03 45.16 3.32
4184 7613 2.677836 AGCATATGCAGTAACCGTTGTG 59.322 45.455 28.62 0.00 45.16 3.33
4185 7614 2.675844 GCATATGCAGTAACCGTTGTGA 59.324 45.455 22.84 0.00 41.59 3.58
4186 7615 3.312421 GCATATGCAGTAACCGTTGTGAT 59.688 43.478 22.84 0.00 41.59 3.06
4187 7616 4.786292 GCATATGCAGTAACCGTTGTGATG 60.786 45.833 22.84 0.00 41.59 3.07
4188 7617 2.535012 TGCAGTAACCGTTGTGATGA 57.465 45.000 0.00 0.00 0.00 2.92
4189 7618 3.052455 TGCAGTAACCGTTGTGATGAT 57.948 42.857 0.00 0.00 0.00 2.45
4190 7619 3.000041 TGCAGTAACCGTTGTGATGATC 59.000 45.455 0.00 0.00 0.00 2.92
4191 7620 3.262420 GCAGTAACCGTTGTGATGATCT 58.738 45.455 0.00 0.00 0.00 2.75
4192 7621 3.684788 GCAGTAACCGTTGTGATGATCTT 59.315 43.478 0.00 0.00 0.00 2.40
4193 7622 4.154195 GCAGTAACCGTTGTGATGATCTTT 59.846 41.667 0.00 0.00 0.00 2.52
4194 7623 5.350365 GCAGTAACCGTTGTGATGATCTTTA 59.650 40.000 0.00 0.00 0.00 1.85
4195 7624 6.037172 GCAGTAACCGTTGTGATGATCTTTAT 59.963 38.462 0.00 0.00 0.00 1.40
4196 7625 7.401860 CAGTAACCGTTGTGATGATCTTTATG 58.598 38.462 0.00 0.00 0.00 1.90
4197 7626 7.277760 CAGTAACCGTTGTGATGATCTTTATGA 59.722 37.037 0.00 0.00 0.00 2.15
4198 7627 6.668541 AACCGTTGTGATGATCTTTATGAG 57.331 37.500 0.00 0.00 0.00 2.90
4211 7640 0.525761 TTATGAGCTTTGTTGCGCCC 59.474 50.000 4.18 0.00 38.13 6.13
4260 7689 3.312421 GCATATGCAGTAACCGTTGTGAT 59.688 43.478 22.84 0.00 41.59 3.06
4271 7700 8.540492 CAGTAACCGTTGTGATGATCTTTATAC 58.460 37.037 0.00 0.00 0.00 1.47
4313 7742 7.814264 ATCTTGCTCCAATTAGTATCCAAAG 57.186 36.000 0.00 0.00 0.00 2.77
4314 7743 6.122277 TCTTGCTCCAATTAGTATCCAAAGG 58.878 40.000 0.00 0.00 0.00 3.11
4392 7833 0.106719 ATCACCTGTTTATGGCCCCG 60.107 55.000 0.00 0.00 0.00 5.73
4404 7845 4.056125 GCCCCGCCACTTGCTTTC 62.056 66.667 0.00 0.00 38.05 2.62
4408 7849 0.318955 CCCGCCACTTGCTTTCTTTG 60.319 55.000 0.00 0.00 38.05 2.77
4409 7850 0.385390 CCGCCACTTGCTTTCTTTGT 59.615 50.000 0.00 0.00 38.05 2.83
4410 7851 1.202405 CCGCCACTTGCTTTCTTTGTT 60.202 47.619 0.00 0.00 38.05 2.83
4411 7852 2.539476 CGCCACTTGCTTTCTTTGTTT 58.461 42.857 0.00 0.00 38.05 2.83
4412 7853 2.929398 CGCCACTTGCTTTCTTTGTTTT 59.071 40.909 0.00 0.00 38.05 2.43
4413 7854 3.370672 CGCCACTTGCTTTCTTTGTTTTT 59.629 39.130 0.00 0.00 38.05 1.94
4454 7895 6.365520 ACAAGTTAGAACAAAACAGGGAGAT 58.634 36.000 0.00 0.00 0.00 2.75
4512 7953 0.909623 CACCCAACCCTAGGTACCAG 59.090 60.000 15.94 9.38 33.12 4.00
4519 7960 0.467659 CCCTAGGTACCAGAGGTCCG 60.468 65.000 24.24 10.99 37.09 4.79
4581 8022 3.998672 TGACCGCGTCAACCCCTC 61.999 66.667 4.92 0.00 39.78 4.30
4620 8067 0.535328 CTCATCTCGTCGGCCTCCTA 60.535 60.000 0.00 0.00 0.00 2.94
4647 8094 3.411517 CCCATCCACGCCCTCCTT 61.412 66.667 0.00 0.00 0.00 3.36
4648 8095 2.677228 CCATCCACGCCCTCCTTT 59.323 61.111 0.00 0.00 0.00 3.11
4667 8114 4.666253 GCACCTCTTGGCCAGCCA 62.666 66.667 7.43 7.43 45.63 4.75
4680 8127 0.674581 CCAGCCATCGTTTCTCTGCA 60.675 55.000 0.00 0.00 0.00 4.41
4704 8151 1.449246 GCGCAAGATGCACCTCTCT 60.449 57.895 0.30 0.00 45.36 3.10
4720 8167 4.471386 ACCTCTCTGTGCCTAATACATTGT 59.529 41.667 0.00 0.00 0.00 2.71
4725 8172 6.816640 TCTCTGTGCCTAATACATTGTTGTAC 59.183 38.462 0.00 0.00 41.02 2.90
4734 8181 1.270839 ACATTGTTGTACGGCTCTGCT 60.271 47.619 0.00 0.00 33.16 4.24
4752 8199 1.381327 TCCCACCTCTCCATCGTCC 60.381 63.158 0.00 0.00 0.00 4.79
4754 8201 1.680522 CCCACCTCTCCATCGTCCAG 61.681 65.000 0.00 0.00 0.00 3.86
4759 8206 1.000359 TCTCCATCGTCCAGCCTCA 60.000 57.895 0.00 0.00 0.00 3.86
4792 8239 1.067283 CCTCGTCATCTTGCTGACTGT 60.067 52.381 2.77 0.00 42.73 3.55
4821 8268 4.147322 GTGCGCCAACATCGACCG 62.147 66.667 4.18 0.00 0.00 4.79
4851 8298 3.260884 CCCTCTTGCAACTTCCTACTACA 59.739 47.826 0.00 0.00 0.00 2.74
4852 8299 4.499183 CCTCTTGCAACTTCCTACTACAG 58.501 47.826 0.00 0.00 0.00 2.74
4854 8301 5.135508 TCTTGCAACTTCCTACTACAGAC 57.864 43.478 0.00 0.00 0.00 3.51
4879 8326 1.429463 CTTACCTCGTGTCCAGCAAC 58.571 55.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.393132 GCACCCCTTGAAGTAGCCTC 60.393 60.000 0.00 0.00 0.00 4.70
1 2 1.685820 GCACCCCTTGAAGTAGCCT 59.314 57.895 0.00 0.00 0.00 4.58
2 3 1.745489 CGCACCCCTTGAAGTAGCC 60.745 63.158 0.00 0.00 0.00 3.93
3 4 2.399356 GCGCACCCCTTGAAGTAGC 61.399 63.158 0.30 0.00 0.00 3.58
4 5 0.741221 GAGCGCACCCCTTGAAGTAG 60.741 60.000 11.47 0.00 0.00 2.57
5 6 1.295423 GAGCGCACCCCTTGAAGTA 59.705 57.895 11.47 0.00 0.00 2.24
6 7 2.032681 GAGCGCACCCCTTGAAGT 59.967 61.111 11.47 0.00 0.00 3.01
7 8 3.121030 CGAGCGCACCCCTTGAAG 61.121 66.667 11.47 0.00 0.00 3.02
8 9 4.697756 CCGAGCGCACCCCTTGAA 62.698 66.667 11.47 0.00 0.00 2.69
18 19 3.559657 ATACGATGCCTCCGAGCGC 62.560 63.158 0.00 0.00 34.65 5.92
19 20 1.442857 GATACGATGCCTCCGAGCG 60.443 63.158 0.00 0.00 34.65 5.03
20 21 1.080434 GGATACGATGCCTCCGAGC 60.080 63.158 0.00 0.00 0.00 5.03
21 22 0.242286 CTGGATACGATGCCTCCGAG 59.758 60.000 0.00 0.00 42.51 4.63
22 23 0.467474 ACTGGATACGATGCCTCCGA 60.467 55.000 0.00 0.00 42.51 4.55
23 24 0.319040 CACTGGATACGATGCCTCCG 60.319 60.000 0.00 0.00 42.51 4.63
24 25 0.601311 GCACTGGATACGATGCCTCC 60.601 60.000 0.00 0.00 42.51 4.30
25 26 0.104855 TGCACTGGATACGATGCCTC 59.895 55.000 1.00 0.00 37.26 4.70
26 27 0.761187 ATGCACTGGATACGATGCCT 59.239 50.000 0.00 0.00 37.26 4.75
27 28 1.151668 GATGCACTGGATACGATGCC 58.848 55.000 0.00 0.00 37.26 4.40
28 29 1.869774 TGATGCACTGGATACGATGC 58.130 50.000 0.00 0.00 42.51 3.91
29 30 3.249320 CCTTTGATGCACTGGATACGATG 59.751 47.826 0.00 0.00 42.51 3.84
30 31 3.134623 TCCTTTGATGCACTGGATACGAT 59.865 43.478 0.00 0.00 42.51 3.73
31 32 2.499693 TCCTTTGATGCACTGGATACGA 59.500 45.455 0.00 0.00 42.51 3.43
32 33 2.905075 TCCTTTGATGCACTGGATACG 58.095 47.619 0.00 0.00 42.51 3.06
33 34 4.437390 CGTTTCCTTTGATGCACTGGATAC 60.437 45.833 0.00 0.00 0.00 2.24
34 35 3.689161 CGTTTCCTTTGATGCACTGGATA 59.311 43.478 0.00 0.00 0.00 2.59
35 36 2.489329 CGTTTCCTTTGATGCACTGGAT 59.511 45.455 0.00 0.00 0.00 3.41
36 37 1.879380 CGTTTCCTTTGATGCACTGGA 59.121 47.619 0.00 0.00 0.00 3.86
37 38 1.068333 CCGTTTCCTTTGATGCACTGG 60.068 52.381 0.00 0.00 0.00 4.00
38 39 1.666888 GCCGTTTCCTTTGATGCACTG 60.667 52.381 0.00 0.00 0.00 3.66
39 40 0.598065 GCCGTTTCCTTTGATGCACT 59.402 50.000 0.00 0.00 0.00 4.40
40 41 0.313672 TGCCGTTTCCTTTGATGCAC 59.686 50.000 0.00 0.00 0.00 4.57
41 42 0.313672 GTGCCGTTTCCTTTGATGCA 59.686 50.000 0.00 0.00 0.00 3.96
42 43 0.388520 GGTGCCGTTTCCTTTGATGC 60.389 55.000 0.00 0.00 0.00 3.91
43 44 0.109781 CGGTGCCGTTTCCTTTGATG 60.110 55.000 1.93 0.00 34.35 3.07
44 45 1.241315 CCGGTGCCGTTTCCTTTGAT 61.241 55.000 9.90 0.00 37.81 2.57
45 46 1.894756 CCGGTGCCGTTTCCTTTGA 60.895 57.895 9.90 0.00 37.81 2.69
46 47 2.642700 CCGGTGCCGTTTCCTTTG 59.357 61.111 9.90 0.00 37.81 2.77
47 48 3.292159 GCCGGTGCCGTTTCCTTT 61.292 61.111 1.90 0.00 37.81 3.11
57 58 4.151582 TTAGGTAGCCGCCGGTGC 62.152 66.667 10.27 9.98 0.00 5.01
58 59 2.202837 GTTAGGTAGCCGCCGGTG 60.203 66.667 8.42 8.42 0.00 4.94
59 60 3.464494 GGTTAGGTAGCCGCCGGT 61.464 66.667 4.45 0.00 0.00 5.28
60 61 3.463585 TGGTTAGGTAGCCGCCGG 61.464 66.667 0.00 0.00 0.00 6.13
61 62 2.202837 GTGGTTAGGTAGCCGCCG 60.203 66.667 0.00 0.00 31.81 6.46
62 63 0.035725 AAAGTGGTTAGGTAGCCGCC 60.036 55.000 0.24 0.00 37.74 6.13
63 64 1.366679 GAAAGTGGTTAGGTAGCCGC 58.633 55.000 0.00 0.00 37.34 6.53
64 65 1.406477 GGGAAAGTGGTTAGGTAGCCG 60.406 57.143 0.00 0.00 0.00 5.52
65 66 1.064906 GGGGAAAGTGGTTAGGTAGCC 60.065 57.143 0.00 0.00 0.00 3.93
66 67 1.914108 AGGGGAAAGTGGTTAGGTAGC 59.086 52.381 0.00 0.00 0.00 3.58
67 68 4.567116 GGAAAGGGGAAAGTGGTTAGGTAG 60.567 50.000 0.00 0.00 0.00 3.18
68 69 3.331591 GGAAAGGGGAAAGTGGTTAGGTA 59.668 47.826 0.00 0.00 0.00 3.08
69 70 2.109480 GGAAAGGGGAAAGTGGTTAGGT 59.891 50.000 0.00 0.00 0.00 3.08
70 71 2.378886 AGGAAAGGGGAAAGTGGTTAGG 59.621 50.000 0.00 0.00 0.00 2.69
71 72 3.561528 GGAGGAAAGGGGAAAGTGGTTAG 60.562 52.174 0.00 0.00 0.00 2.34
72 73 2.377531 GGAGGAAAGGGGAAAGTGGTTA 59.622 50.000 0.00 0.00 0.00 2.85
73 74 1.147191 GGAGGAAAGGGGAAAGTGGTT 59.853 52.381 0.00 0.00 0.00 3.67
74 75 0.778083 GGAGGAAAGGGGAAAGTGGT 59.222 55.000 0.00 0.00 0.00 4.16
75 76 1.004862 GAGGAGGAAAGGGGAAAGTGG 59.995 57.143 0.00 0.00 0.00 4.00
76 77 1.988846 AGAGGAGGAAAGGGGAAAGTG 59.011 52.381 0.00 0.00 0.00 3.16
77 78 2.442262 AGAGGAGGAAAGGGGAAAGT 57.558 50.000 0.00 0.00 0.00 2.66
78 79 4.104831 TCTAAGAGGAGGAAAGGGGAAAG 58.895 47.826 0.00 0.00 0.00 2.62
79 80 4.156234 TCTAAGAGGAGGAAAGGGGAAA 57.844 45.455 0.00 0.00 0.00 3.13
80 81 3.844804 GTTCTAAGAGGAGGAAAGGGGAA 59.155 47.826 0.00 0.00 0.00 3.97
81 82 3.451890 GTTCTAAGAGGAGGAAAGGGGA 58.548 50.000 0.00 0.00 0.00 4.81
82 83 2.506231 GGTTCTAAGAGGAGGAAAGGGG 59.494 54.545 0.00 0.00 0.00 4.79
83 84 2.506231 GGGTTCTAAGAGGAGGAAAGGG 59.494 54.545 0.00 0.00 0.00 3.95
84 85 3.455849 AGGGTTCTAAGAGGAGGAAAGG 58.544 50.000 0.00 0.00 0.00 3.11
85 86 4.100344 GCTAGGGTTCTAAGAGGAGGAAAG 59.900 50.000 0.00 0.00 0.00 2.62
86 87 4.031611 GCTAGGGTTCTAAGAGGAGGAAA 58.968 47.826 0.00 0.00 0.00 3.13
87 88 3.272551 AGCTAGGGTTCTAAGAGGAGGAA 59.727 47.826 0.00 0.00 0.00 3.36
88 89 2.860041 AGCTAGGGTTCTAAGAGGAGGA 59.140 50.000 0.00 0.00 0.00 3.71
89 90 3.227614 GAGCTAGGGTTCTAAGAGGAGG 58.772 54.545 0.00 0.00 0.00 4.30
90 91 3.227614 GGAGCTAGGGTTCTAAGAGGAG 58.772 54.545 0.00 0.00 0.00 3.69
91 92 2.423088 CGGAGCTAGGGTTCTAAGAGGA 60.423 54.545 0.00 0.00 0.00 3.71
92 93 1.957877 CGGAGCTAGGGTTCTAAGAGG 59.042 57.143 0.00 0.00 0.00 3.69
93 94 2.657143 ACGGAGCTAGGGTTCTAAGAG 58.343 52.381 0.00 0.00 0.00 2.85
94 95 2.822707 ACGGAGCTAGGGTTCTAAGA 57.177 50.000 0.00 0.00 0.00 2.10
95 96 3.025262 AGAACGGAGCTAGGGTTCTAAG 58.975 50.000 19.33 0.00 46.15 2.18
96 97 3.097342 AGAACGGAGCTAGGGTTCTAA 57.903 47.619 19.33 0.00 46.15 2.10
97 98 2.822707 AGAACGGAGCTAGGGTTCTA 57.177 50.000 19.33 0.00 46.15 2.10
98 99 3.693810 AGAACGGAGCTAGGGTTCT 57.306 52.632 16.55 16.55 43.98 3.01
99 100 1.275573 ACAAGAACGGAGCTAGGGTTC 59.724 52.381 13.36 13.36 40.17 3.62
100 101 1.349067 ACAAGAACGGAGCTAGGGTT 58.651 50.000 0.00 0.00 0.00 4.11
101 102 2.226962 TACAAGAACGGAGCTAGGGT 57.773 50.000 0.00 0.00 0.00 4.34
102 103 3.718815 GATTACAAGAACGGAGCTAGGG 58.281 50.000 0.00 0.00 0.00 3.53
103 104 3.066342 TCGATTACAAGAACGGAGCTAGG 59.934 47.826 0.00 0.00 0.00 3.02
104 105 4.288670 TCGATTACAAGAACGGAGCTAG 57.711 45.455 0.00 0.00 0.00 3.42
105 106 4.707030 TTCGATTACAAGAACGGAGCTA 57.293 40.909 0.00 0.00 0.00 3.32
106 107 3.587797 TTCGATTACAAGAACGGAGCT 57.412 42.857 0.00 0.00 0.00 4.09
107 108 4.092968 ACAATTCGATTACAAGAACGGAGC 59.907 41.667 0.00 0.00 0.00 4.70
108 109 5.779806 ACAATTCGATTACAAGAACGGAG 57.220 39.130 0.00 0.00 0.00 4.63
109 110 7.253850 CGATTACAATTCGATTACAAGAACGGA 60.254 37.037 0.00 0.00 0.00 4.69
110 111 6.839301 CGATTACAATTCGATTACAAGAACGG 59.161 38.462 0.00 0.00 0.00 4.44
111 112 6.351000 GCGATTACAATTCGATTACAAGAACG 59.649 38.462 0.00 0.00 0.00 3.95
112 113 6.627671 GGCGATTACAATTCGATTACAAGAAC 59.372 38.462 0.00 0.00 0.00 3.01
113 114 6.314152 TGGCGATTACAATTCGATTACAAGAA 59.686 34.615 0.00 0.00 0.00 2.52
114 115 5.813157 TGGCGATTACAATTCGATTACAAGA 59.187 36.000 0.00 0.00 0.00 3.02
115 116 5.901884 GTGGCGATTACAATTCGATTACAAG 59.098 40.000 0.00 0.00 0.00 3.16
116 117 5.583061 AGTGGCGATTACAATTCGATTACAA 59.417 36.000 0.00 0.00 0.00 2.41
117 118 5.113383 AGTGGCGATTACAATTCGATTACA 58.887 37.500 0.00 0.00 0.00 2.41
118 119 5.233476 TGAGTGGCGATTACAATTCGATTAC 59.767 40.000 0.00 0.00 0.00 1.89
119 120 5.353111 TGAGTGGCGATTACAATTCGATTA 58.647 37.500 0.00 0.00 0.00 1.75
120 121 4.188462 TGAGTGGCGATTACAATTCGATT 58.812 39.130 0.00 0.00 0.00 3.34
121 122 3.792401 TGAGTGGCGATTACAATTCGAT 58.208 40.909 0.00 0.00 0.00 3.59
122 123 3.239587 TGAGTGGCGATTACAATTCGA 57.760 42.857 0.00 0.00 0.00 3.71
123 124 5.845985 ATATGAGTGGCGATTACAATTCG 57.154 39.130 0.00 0.00 0.00 3.34
124 125 6.145534 TCGAATATGAGTGGCGATTACAATTC 59.854 38.462 0.00 0.00 0.00 2.17
125 126 5.989168 TCGAATATGAGTGGCGATTACAATT 59.011 36.000 0.00 0.00 0.00 2.32
126 127 5.538118 TCGAATATGAGTGGCGATTACAAT 58.462 37.500 0.00 0.00 0.00 2.71
127 128 4.939271 TCGAATATGAGTGGCGATTACAA 58.061 39.130 0.00 0.00 0.00 2.41
128 129 4.577834 TCGAATATGAGTGGCGATTACA 57.422 40.909 0.00 0.00 0.00 2.41
129 130 5.287274 CAGATCGAATATGAGTGGCGATTAC 59.713 44.000 0.00 0.00 41.21 1.89
130 131 5.048013 ACAGATCGAATATGAGTGGCGATTA 60.048 40.000 0.00 0.00 41.21 1.75
131 132 4.240888 CAGATCGAATATGAGTGGCGATT 58.759 43.478 0.00 0.00 41.21 3.34
132 133 3.256879 ACAGATCGAATATGAGTGGCGAT 59.743 43.478 0.00 0.00 43.48 4.58
133 134 2.623416 ACAGATCGAATATGAGTGGCGA 59.377 45.455 0.00 0.00 35.32 5.54
134 135 2.728318 CACAGATCGAATATGAGTGGCG 59.272 50.000 0.00 0.00 0.00 5.69
135 136 3.982475 TCACAGATCGAATATGAGTGGC 58.018 45.455 0.00 0.00 0.00 5.01
136 137 4.279420 TCCTCACAGATCGAATATGAGTGG 59.721 45.833 14.49 10.69 35.96 4.00
137 138 5.444663 TCCTCACAGATCGAATATGAGTG 57.555 43.478 14.49 7.61 35.96 3.51
138 139 5.830457 TCTTCCTCACAGATCGAATATGAGT 59.170 40.000 14.49 0.00 35.96 3.41
139 140 6.324561 TCTTCCTCACAGATCGAATATGAG 57.675 41.667 10.69 10.69 37.20 2.90
140 141 6.907853 ATCTTCCTCACAGATCGAATATGA 57.092 37.500 0.00 0.00 0.00 2.15
141 142 6.128607 GCAATCTTCCTCACAGATCGAATATG 60.129 42.308 0.00 0.00 30.19 1.78
142 143 5.931146 GCAATCTTCCTCACAGATCGAATAT 59.069 40.000 0.00 0.00 30.19 1.28
143 144 5.069648 AGCAATCTTCCTCACAGATCGAATA 59.930 40.000 0.00 0.00 30.19 1.75
144 145 4.125703 GCAATCTTCCTCACAGATCGAAT 58.874 43.478 0.00 0.00 30.19 3.34
145 146 3.196469 AGCAATCTTCCTCACAGATCGAA 59.804 43.478 0.00 0.00 30.19 3.71
146 147 2.762887 AGCAATCTTCCTCACAGATCGA 59.237 45.455 0.00 0.00 30.19 3.59
147 148 3.176552 AGCAATCTTCCTCACAGATCG 57.823 47.619 0.00 0.00 30.19 3.69
148 149 4.057432 GCTAGCAATCTTCCTCACAGATC 58.943 47.826 10.63 0.00 30.19 2.75
149 150 3.710677 AGCTAGCAATCTTCCTCACAGAT 59.289 43.478 18.83 0.00 31.94 2.90
150 151 3.102972 AGCTAGCAATCTTCCTCACAGA 58.897 45.455 18.83 0.00 0.00 3.41
151 152 3.540314 AGCTAGCAATCTTCCTCACAG 57.460 47.619 18.83 0.00 0.00 3.66
152 153 4.026744 AGTAGCTAGCAATCTTCCTCACA 58.973 43.478 18.83 0.00 0.00 3.58
153 154 4.098654 TCAGTAGCTAGCAATCTTCCTCAC 59.901 45.833 18.83 0.00 0.00 3.51
154 155 4.281657 TCAGTAGCTAGCAATCTTCCTCA 58.718 43.478 18.83 0.00 0.00 3.86
155 156 4.340950 ACTCAGTAGCTAGCAATCTTCCTC 59.659 45.833 18.83 0.00 0.00 3.71
156 157 4.099266 CACTCAGTAGCTAGCAATCTTCCT 59.901 45.833 18.83 0.00 0.00 3.36
157 158 4.098654 TCACTCAGTAGCTAGCAATCTTCC 59.901 45.833 18.83 0.00 0.00 3.46
158 159 5.067153 TCTCACTCAGTAGCTAGCAATCTTC 59.933 44.000 18.83 0.36 0.00 2.87
159 160 4.952957 TCTCACTCAGTAGCTAGCAATCTT 59.047 41.667 18.83 0.00 0.00 2.40
160 161 4.531854 TCTCACTCAGTAGCTAGCAATCT 58.468 43.478 18.83 8.91 0.00 2.40
161 162 4.909696 TCTCACTCAGTAGCTAGCAATC 57.090 45.455 18.83 6.60 0.00 2.67
162 163 6.068010 AGTATCTCACTCAGTAGCTAGCAAT 58.932 40.000 18.83 0.00 28.33 3.56
163 164 5.441500 AGTATCTCACTCAGTAGCTAGCAA 58.558 41.667 18.83 0.00 28.33 3.91
164 165 5.042463 AGTATCTCACTCAGTAGCTAGCA 57.958 43.478 18.83 0.00 28.33 3.49
165 166 6.147164 CACTAGTATCTCACTCAGTAGCTAGC 59.853 46.154 6.62 6.62 38.80 3.42
166 167 7.170828 CACACTAGTATCTCACTCAGTAGCTAG 59.829 44.444 0.00 0.00 38.80 3.42
167 168 6.987404 CACACTAGTATCTCACTCAGTAGCTA 59.013 42.308 0.00 0.00 38.80 3.32
168 169 5.820423 CACACTAGTATCTCACTCAGTAGCT 59.180 44.000 0.00 0.00 38.80 3.32
169 170 5.504994 GCACACTAGTATCTCACTCAGTAGC 60.505 48.000 0.00 0.00 38.80 3.58
170 171 5.008217 GGCACACTAGTATCTCACTCAGTAG 59.992 48.000 0.00 0.00 38.80 2.57
171 172 4.882427 GGCACACTAGTATCTCACTCAGTA 59.118 45.833 0.00 0.00 38.80 2.74
172 173 3.697045 GGCACACTAGTATCTCACTCAGT 59.303 47.826 0.00 0.00 38.80 3.41
173 174 3.067461 GGGCACACTAGTATCTCACTCAG 59.933 52.174 0.00 0.00 38.80 3.35
174 175 3.024547 GGGCACACTAGTATCTCACTCA 58.975 50.000 0.00 0.00 38.80 3.41
175 176 3.292460 AGGGCACACTAGTATCTCACTC 58.708 50.000 0.00 0.00 38.80 3.51
176 177 3.390175 AGGGCACACTAGTATCTCACT 57.610 47.619 0.00 0.00 41.62 3.41
177 178 5.105473 TGTTAAGGGCACACTAGTATCTCAC 60.105 44.000 0.00 0.00 0.00 3.51
178 179 5.020795 TGTTAAGGGCACACTAGTATCTCA 58.979 41.667 0.00 0.00 0.00 3.27
179 180 5.593679 TGTTAAGGGCACACTAGTATCTC 57.406 43.478 0.00 0.00 0.00 2.75
180 181 5.685075 GCATGTTAAGGGCACACTAGTATCT 60.685 44.000 0.00 0.00 0.00 1.98
181 182 4.511826 GCATGTTAAGGGCACACTAGTATC 59.488 45.833 0.00 0.00 0.00 2.24
182 183 4.451900 GCATGTTAAGGGCACACTAGTAT 58.548 43.478 0.00 0.00 0.00 2.12
183 184 3.677700 CGCATGTTAAGGGCACACTAGTA 60.678 47.826 0.00 0.00 0.00 1.82
184 185 2.711542 GCATGTTAAGGGCACACTAGT 58.288 47.619 0.00 0.00 0.00 2.57
185 186 1.665679 CGCATGTTAAGGGCACACTAG 59.334 52.381 0.00 0.00 0.00 2.57
186 187 1.732941 CGCATGTTAAGGGCACACTA 58.267 50.000 0.00 0.00 0.00 2.74
187 188 1.586154 GCGCATGTTAAGGGCACACT 61.586 55.000 0.30 0.00 43.54 3.55
188 189 1.154035 GCGCATGTTAAGGGCACAC 60.154 57.895 0.30 0.00 43.54 3.82
189 190 2.685829 CGCGCATGTTAAGGGCACA 61.686 57.895 8.75 0.00 44.20 4.57
190 191 2.100216 CGCGCATGTTAAGGGCAC 59.900 61.111 8.75 0.00 44.20 5.01
191 192 2.359354 ACGCGCATGTTAAGGGCA 60.359 55.556 5.73 0.00 44.20 5.36
192 193 2.100216 CACGCGCATGTTAAGGGC 59.900 61.111 5.73 0.00 41.02 5.19
193 194 2.100216 GCACGCGCATGTTAAGGG 59.900 61.111 5.73 0.00 38.36 3.95
194 195 1.087202 TAGGCACGCGCATGTTAAGG 61.087 55.000 5.73 0.00 41.24 2.69
195 196 0.937304 ATAGGCACGCGCATGTTAAG 59.063 50.000 5.73 0.00 41.24 1.85
196 197 0.934496 GATAGGCACGCGCATGTTAA 59.066 50.000 5.73 0.00 41.24 2.01
197 198 0.179097 TGATAGGCACGCGCATGTTA 60.179 50.000 5.73 0.00 41.24 2.41
198 199 1.024046 TTGATAGGCACGCGCATGTT 61.024 50.000 5.73 0.00 41.24 2.71
199 200 1.449423 TTGATAGGCACGCGCATGT 60.449 52.632 5.73 0.00 41.24 3.21
200 201 1.010797 GTTGATAGGCACGCGCATG 60.011 57.895 5.73 2.46 41.24 4.06
201 202 1.449423 TGTTGATAGGCACGCGCAT 60.449 52.632 5.73 0.00 41.24 4.73
272 273 3.373439 GTGGTGTCTCATCTTCAGCATTC 59.627 47.826 0.00 0.00 40.65 2.67
358 359 3.572255 TCAAAAGGCACCTTAATCACCAC 59.428 43.478 1.53 0.00 34.84 4.16
378 380 9.699410 AAATCAACCAAGTAATCCTAATGATCA 57.301 29.630 0.00 0.00 31.61 2.92
395 397 7.504403 TCTGCTTTTATTTCCAAAATCAACCA 58.496 30.769 0.00 0.00 0.00 3.67
553 555 1.279496 AACCTAGCCAGATCTGCACA 58.721 50.000 17.76 2.90 0.00 4.57
562 564 6.635030 ACTAAGAAACAAAAACCTAGCCAG 57.365 37.500 0.00 0.00 0.00 4.85
727 2167 9.131791 AGCGGGACAATTATCTACATTTATTTT 57.868 29.630 0.00 0.00 0.00 1.82
933 2373 5.833131 ACATCAATCACCAGGTTAACACTTT 59.167 36.000 8.10 0.00 0.00 2.66
1137 2577 1.577328 AATTTGACGCACGCTCCTGG 61.577 55.000 0.00 0.00 0.00 4.45
1397 2855 6.312141 TGATTTCATCCAACACCTCATCTA 57.688 37.500 0.00 0.00 0.00 1.98
1609 3067 6.520272 CAAGATGACTCAGGGGTAGATTAAG 58.480 44.000 0.00 0.00 0.00 1.85
2001 3459 8.495949 CAAACATACTCAAGTTCTCGTAACAAT 58.504 33.333 6.26 0.00 0.00 2.71
2067 3525 5.878669 CAGATCATCACATCTCCTGAACAAA 59.121 40.000 0.00 0.00 30.07 2.83
2232 3690 5.814764 AATAGCAAGAGAAGCATGACTTG 57.185 39.130 0.00 0.00 39.29 3.16
2428 3888 3.660501 AACTGTCAGCGATGTGTAGAA 57.339 42.857 0.00 0.00 0.00 2.10
2497 3957 5.283247 CGATCTACCGAATTCGTATAACTGC 59.717 44.000 25.10 7.70 37.74 4.40
2568 4028 7.114754 AGCATTCTGGAATTGTTCAGAGAATA 58.885 34.615 12.21 0.00 40.55 1.75
2771 4317 3.613432 CGTCACCCAACCAGTAGTACTTC 60.613 52.174 0.00 0.00 0.00 3.01
2772 4318 2.298163 CGTCACCCAACCAGTAGTACTT 59.702 50.000 0.00 0.00 0.00 2.24
2773 4319 1.891150 CGTCACCCAACCAGTAGTACT 59.109 52.381 0.00 0.00 0.00 2.73
2800 4346 5.423015 GAGTAGATCTGAGTTGAATGGCAA 58.577 41.667 5.18 0.00 0.00 4.52
2948 4494 9.621629 TTAGAAAAAGAACCACAGAAGATAACA 57.378 29.630 0.00 0.00 0.00 2.41
3030 4576 9.485591 AAAAGATTATAAAATCACAGTTACGCG 57.514 29.630 3.53 3.53 43.44 6.01
3554 5100 1.830587 AACATCTCGGCCTCAGCACA 61.831 55.000 0.00 0.00 42.56 4.57
3628 5174 0.035056 CCTTCTCCGACTTGGCCAAT 60.035 55.000 20.85 9.47 37.80 3.16
3824 5370 5.585445 GGATCTTGGACAGCATCATCATATC 59.415 44.000 0.00 0.00 0.00 1.63
3826 5372 4.348754 TGGATCTTGGACAGCATCATCATA 59.651 41.667 0.00 0.00 0.00 2.15
3962 5616 5.980698 AAGAAACATCATGAGACGCATAG 57.019 39.130 0.09 0.00 34.82 2.23
3966 5620 7.910304 ACTAATAAAGAAACATCATGAGACGC 58.090 34.615 0.09 0.00 0.00 5.19
3967 5621 9.694520 CAACTAATAAAGAAACATCATGAGACG 57.305 33.333 0.09 0.00 0.00 4.18
4133 7562 0.251121 ATCACACCAATCAACGGGCA 60.251 50.000 0.00 0.00 0.00 5.36
4136 7565 4.439305 AAATCATCACACCAATCAACGG 57.561 40.909 0.00 0.00 0.00 4.44
4146 7575 7.863877 TGCATATGCTTGATAAAATCATCACAC 59.136 33.333 27.13 0.00 42.66 3.82
4179 7608 7.533426 ACAAAGCTCATAAAGATCATCACAAC 58.467 34.615 0.00 0.00 0.00 3.32
4180 7609 7.692460 ACAAAGCTCATAAAGATCATCACAA 57.308 32.000 0.00 0.00 0.00 3.33
4181 7610 7.532571 CAACAAAGCTCATAAAGATCATCACA 58.467 34.615 0.00 0.00 0.00 3.58
4182 7611 6.471519 GCAACAAAGCTCATAAAGATCATCAC 59.528 38.462 0.00 0.00 0.00 3.06
4183 7612 6.558009 GCAACAAAGCTCATAAAGATCATCA 58.442 36.000 0.00 0.00 0.00 3.07
4184 7613 5.680229 CGCAACAAAGCTCATAAAGATCATC 59.320 40.000 0.00 0.00 0.00 2.92
4185 7614 5.575957 CGCAACAAAGCTCATAAAGATCAT 58.424 37.500 0.00 0.00 0.00 2.45
4186 7615 4.672542 GCGCAACAAAGCTCATAAAGATCA 60.673 41.667 0.30 0.00 0.00 2.92
4187 7616 3.788163 GCGCAACAAAGCTCATAAAGATC 59.212 43.478 0.30 0.00 0.00 2.75
4188 7617 3.428045 GGCGCAACAAAGCTCATAAAGAT 60.428 43.478 10.83 0.00 0.00 2.40
4189 7618 2.095263 GGCGCAACAAAGCTCATAAAGA 60.095 45.455 10.83 0.00 0.00 2.52
4190 7619 2.253603 GGCGCAACAAAGCTCATAAAG 58.746 47.619 10.83 0.00 0.00 1.85
4191 7620 1.067915 GGGCGCAACAAAGCTCATAAA 60.068 47.619 10.83 0.00 33.25 1.40
4192 7621 0.525761 GGGCGCAACAAAGCTCATAA 59.474 50.000 10.83 0.00 33.25 1.90
4193 7622 1.643868 CGGGCGCAACAAAGCTCATA 61.644 55.000 10.83 0.00 32.36 2.15
4194 7623 2.964978 GGGCGCAACAAAGCTCAT 59.035 55.556 10.83 0.00 33.25 2.90
4195 7624 3.659092 CGGGCGCAACAAAGCTCA 61.659 61.111 10.83 0.00 32.36 4.26
4196 7625 3.194272 AACGGGCGCAACAAAGCTC 62.194 57.895 10.83 0.00 0.00 4.09
4197 7626 3.216292 AACGGGCGCAACAAAGCT 61.216 55.556 10.83 0.00 0.00 3.74
4198 7627 2.747507 ATCAACGGGCGCAACAAAGC 62.748 55.000 10.83 0.00 0.00 3.51
4211 7640 9.505995 TTGATAAAATCATCACATCAATCAACG 57.494 29.630 0.00 0.00 39.39 4.10
4260 7689 5.529581 TGGAGCATGTCGTATAAAGATCA 57.470 39.130 0.00 0.00 0.00 2.92
4271 7700 5.333645 GCAAGATACTAATTGGAGCATGTCG 60.334 44.000 0.00 0.00 0.00 4.35
4313 7742 9.490379 CCCTATGTTGAATAGTTATACTGAACC 57.510 37.037 0.00 0.00 0.00 3.62
4392 7833 4.944962 AAAAACAAAGAAAGCAAGTGGC 57.055 36.364 0.00 0.00 45.30 5.01
4454 7895 1.375396 CAACACGGGAGCGAATGGA 60.375 57.895 0.00 0.00 0.00 3.41
4512 7953 2.668550 GTTGTGGTGGCGGACCTC 60.669 66.667 5.23 2.46 46.32 3.85
4519 7960 2.281208 TAGCGTGGTTGTGGTGGC 60.281 61.111 0.00 0.00 0.00 5.01
4594 8035 0.526524 CCGACGAGATGAGAACAGCC 60.527 60.000 0.00 0.00 32.31 4.85
4595 8036 1.142778 GCCGACGAGATGAGAACAGC 61.143 60.000 0.00 0.00 0.00 4.40
4596 8037 0.526524 GGCCGACGAGATGAGAACAG 60.527 60.000 0.00 0.00 0.00 3.16
4597 8038 0.965866 AGGCCGACGAGATGAGAACA 60.966 55.000 0.00 0.00 0.00 3.18
4598 8039 0.248702 GAGGCCGACGAGATGAGAAC 60.249 60.000 0.00 0.00 0.00 3.01
4600 8041 1.824329 GGAGGCCGACGAGATGAGA 60.824 63.158 0.00 0.00 0.00 3.27
4601 8042 0.535328 TAGGAGGCCGACGAGATGAG 60.535 60.000 0.00 0.00 0.00 2.90
4603 8044 0.820074 AGTAGGAGGCCGACGAGATG 60.820 60.000 0.00 0.00 34.35 2.90
4620 8067 0.978146 CGTGGATGGGAGGAGGAAGT 60.978 60.000 0.00 0.00 0.00 3.01
4667 8114 1.376543 CAGGCATGCAGAGAAACGAT 58.623 50.000 21.36 0.00 0.00 3.73
4704 8151 4.632251 CCGTACAACAATGTATTAGGCACA 59.368 41.667 0.00 0.00 43.60 4.57
4714 8161 1.156736 GCAGAGCCGTACAACAATGT 58.843 50.000 0.00 0.00 43.74 2.71
4720 8167 1.911269 TGGGAGCAGAGCCGTACAA 60.911 57.895 0.00 0.00 0.00 2.41
4725 8172 4.154347 GAGGTGGGAGCAGAGCCG 62.154 72.222 0.00 0.00 0.00 5.52
4734 8181 1.381327 GGACGATGGAGAGGTGGGA 60.381 63.158 0.00 0.00 0.00 4.37
4759 8206 3.402681 CGAGGTGGATGGGTGCCT 61.403 66.667 0.00 0.00 0.00 4.75
4769 8216 0.247460 TCAGCAAGATGACGAGGTGG 59.753 55.000 0.00 0.00 0.00 4.61
4801 8248 1.447140 GTCGATGTTGGCGCACCTA 60.447 57.895 10.83 0.00 36.63 3.08
4821 8268 4.802051 TGCAAGAGGGCGATGGGC 62.802 66.667 0.00 0.00 42.51 5.36
4825 8272 0.678048 GGAAGTTGCAAGAGGGCGAT 60.678 55.000 0.00 0.00 36.28 4.58
4851 8298 1.623811 ACACGAGGTAAGCATTGGTCT 59.376 47.619 0.00 0.00 0.00 3.85
4852 8299 2.000447 GACACGAGGTAAGCATTGGTC 59.000 52.381 0.00 0.00 0.00 4.02
4854 8301 1.338674 TGGACACGAGGTAAGCATTGG 60.339 52.381 0.00 0.00 0.00 3.16
4893 8341 2.148446 ATTGGATCATGTGTGTGGGG 57.852 50.000 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.