Multiple sequence alignment - TraesCS4D01G150000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G150000 chr4D 100.000 9152 0 0 1 9152 164875062 164884213 0.000000e+00 16901.0
1 TraesCS4D01G150000 chr4D 97.927 772 15 1 4766 5536 242938196 242938967 0.000000e+00 1336.0
2 TraesCS4D01G150000 chr4D 92.640 856 52 6 1 848 315343772 315342920 0.000000e+00 1221.0
3 TraesCS4D01G150000 chr4D 85.308 633 93 0 6710 7342 130571702 130571070 0.000000e+00 654.0
4 TraesCS4D01G150000 chr4D 95.918 98 4 0 8983 9080 16403445 16403542 9.510000e-35 159.0
5 TraesCS4D01G150000 chr4D 96.809 94 2 1 8990 9082 16403537 16403444 1.230000e-33 156.0
6 TraesCS4D01G150000 chr4D 91.509 106 9 0 8385 8490 155576689 155576794 7.410000e-31 147.0
7 TraesCS4D01G150000 chr4D 89.474 114 10 2 8378 8490 122197871 122197759 9.580000e-30 143.0
8 TraesCS4D01G150000 chr4D 89.720 107 11 0 8384 8490 157701289 157701395 4.460000e-28 137.0
9 TraesCS4D01G150000 chr4B 96.165 3937 99 11 838 4754 207092993 207096897 0.000000e+00 6386.0
10 TraesCS4D01G150000 chr4B 98.927 1864 17 2 6394 8256 207102061 207103922 0.000000e+00 3328.0
11 TraesCS4D01G150000 chr4B 97.739 575 9 2 5564 6138 207101494 207102064 0.000000e+00 987.0
12 TraesCS4D01G150000 chr4B 96.154 260 10 0 6139 6398 418510980 418510721 8.490000e-115 425.0
13 TraesCS4D01G150000 chr4B 98.864 88 1 0 8990 9077 87405518 87405605 3.420000e-34 158.0
14 TraesCS4D01G150000 chr4B 91.262 103 9 0 8385 8487 315065373 315065475 3.450000e-29 141.0
15 TraesCS4D01G150000 chr4B 89.423 104 4 3 8254 8356 207104017 207104114 3.470000e-24 124.0
16 TraesCS4D01G150000 chr4A 97.844 1994 40 2 6394 8386 385772429 385774420 0.000000e+00 3441.0
17 TraesCS4D01G150000 chr4A 95.391 1584 51 9 3179 4754 385770263 385771832 0.000000e+00 2501.0
18 TraesCS4D01G150000 chr4A 93.721 860 30 7 838 1686 385768119 385768965 0.000000e+00 1267.0
19 TraesCS4D01G150000 chr4A 92.439 701 25 9 1888 2560 385769059 385769759 0.000000e+00 976.0
20 TraesCS4D01G150000 chr4A 93.453 611 18 6 5540 6138 385771832 385772432 0.000000e+00 887.0
21 TraesCS4D01G150000 chr4A 84.992 633 95 0 6710 7342 436383659 436384291 2.150000e-180 643.0
22 TraesCS4D01G150000 chr4A 96.567 233 6 1 2860 3090 385769827 385770059 1.440000e-102 385.0
23 TraesCS4D01G150000 chr4A 93.434 198 9 3 1678 1872 116143332 116143528 3.230000e-74 291.0
24 TraesCS4D01G150000 chr4A 98.148 54 1 0 3089 3142 385770214 385770267 2.720000e-15 95.3
25 TraesCS4D01G150000 chr4A 100.000 40 0 0 2103 2142 385769328 385769367 3.540000e-09 75.0
26 TraesCS4D01G150000 chr6D 98.184 771 14 0 4766 5536 160205169 160204399 0.000000e+00 1347.0
27 TraesCS4D01G150000 chr6D 98.837 86 1 0 8990 9075 458997625 458997540 4.430000e-33 154.0
28 TraesCS4D01G150000 chr6D 98.837 86 1 0 8990 9075 458997540 458997625 4.430000e-33 154.0
29 TraesCS4D01G150000 chr6D 90.566 106 10 0 8385 8490 303444723 303444618 3.450000e-29 141.0
30 TraesCS4D01G150000 chr2D 98.054 771 15 0 4766 5536 360484370 360483600 0.000000e+00 1341.0
31 TraesCS4D01G150000 chr2D 97.795 771 17 0 4766 5536 136426038 136426808 0.000000e+00 1330.0
32 TraesCS4D01G150000 chr2D 95.238 147 4 1 8513 8656 86032800 86032654 7.150000e-56 230.0
33 TraesCS4D01G150000 chr2D 98.876 89 1 0 8990 9078 592140684 592140596 9.510000e-35 159.0
34 TraesCS4D01G150000 chr2D 98.851 87 1 0 8990 9076 592140599 592140685 1.230000e-33 156.0
35 TraesCS4D01G150000 chr2D 95.789 95 4 0 8986 9080 441039189 441039095 4.430000e-33 154.0
36 TraesCS4D01G150000 chr2D 94.949 99 3 2 8987 9083 566134673 566134771 4.430000e-33 154.0
37 TraesCS4D01G150000 chr2D 95.789 95 4 0 8986 9080 638464735 638464829 4.430000e-33 154.0
38 TraesCS4D01G150000 chr1D 98.054 771 15 0 4766 5536 223523804 223524574 0.000000e+00 1341.0
39 TraesCS4D01G150000 chr1D 97.795 771 17 0 4766 5536 105955427 105954657 0.000000e+00 1330.0
40 TraesCS4D01G150000 chr1D 94.787 844 31 6 2 837 68587774 68586936 0.000000e+00 1303.0
41 TraesCS4D01G150000 chr1D 92.849 853 50 6 2 846 390500184 390501033 0.000000e+00 1227.0
42 TraesCS4D01G150000 chr1D 92.814 835 46 9 19 843 422919791 422918961 0.000000e+00 1197.0
43 TraesCS4D01G150000 chr1D 91.892 851 52 7 1 842 360074152 360074994 0.000000e+00 1173.0
44 TraesCS4D01G150000 chr1D 96.935 261 8 0 6137 6397 474601181 474600921 1.090000e-118 438.0
45 TraesCS4D01G150000 chr1D 97.778 90 2 0 8986 9075 6790683 6790594 1.230000e-33 156.0
46 TraesCS4D01G150000 chr1D 98.837 86 1 0 8990 9075 6790594 6790679 4.430000e-33 154.0
47 TraesCS4D01G150000 chr1D 89.623 106 11 0 8385 8490 41754462 41754357 1.600000e-27 135.0
48 TraesCS4D01G150000 chr6A 97.925 771 16 0 4766 5536 410902282 410901512 0.000000e+00 1336.0
49 TraesCS4D01G150000 chr6A 92.417 844 50 7 4 837 426806521 426807360 0.000000e+00 1192.0
50 TraesCS4D01G150000 chr6A 85.901 383 19 7 8512 8859 91339782 91340164 8.680000e-100 375.0
51 TraesCS4D01G150000 chr6A 94.624 186 10 0 1687 1872 7988642 7988457 1.160000e-73 289.0
52 TraesCS4D01G150000 chr6A 90.991 111 10 0 8382 8492 230697582 230697692 5.720000e-32 150.0
53 TraesCS4D01G150000 chr7B 97.922 770 16 0 4766 5535 531651486 531650717 0.000000e+00 1334.0
54 TraesCS4D01G150000 chr7B 95.802 262 11 0 6137 6398 464539952 464539691 3.050000e-114 424.0
55 TraesCS4D01G150000 chr7B 98.864 88 1 0 8990 9077 432933239 432933326 3.420000e-34 158.0
56 TraesCS4D01G150000 chr7A 97.919 769 16 0 4766 5534 664228759 664227991 0.000000e+00 1332.0
57 TraesCS4D01G150000 chr7A 94.737 190 8 2 1687 1875 30261853 30261665 2.500000e-75 294.0
58 TraesCS4D01G150000 chr7A 97.802 91 1 1 8990 9079 637982306 637982396 1.230000e-33 156.0
59 TraesCS4D01G150000 chr7A 92.453 106 7 1 8384 8488 354683089 354683194 5.720000e-32 150.0
60 TraesCS4D01G150000 chr2A 92.732 853 52 5 1 846 448481461 448480612 0.000000e+00 1223.0
61 TraesCS4D01G150000 chr2A 92.632 855 53 5 1 846 448446645 448445792 0.000000e+00 1221.0
62 TraesCS4D01G150000 chr2A 92.453 106 8 0 8385 8490 746800229 746800124 1.590000e-32 152.0
63 TraesCS4D01G150000 chr5A 92.562 847 51 7 1 838 323985879 323986722 0.000000e+00 1205.0
64 TraesCS4D01G150000 chr5A 78.363 1784 282 81 6425 8145 565743758 565742016 0.000000e+00 1061.0
65 TraesCS4D01G150000 chr5A 91.584 202 16 1 1681 1881 519950422 519950623 2.520000e-70 278.0
66 TraesCS4D01G150000 chr5A 89.474 114 10 1 8385 8496 573562509 573562622 9.580000e-30 143.0
67 TraesCS4D01G150000 chr5A 86.992 123 15 1 8374 8496 422874856 422874735 4.460000e-28 137.0
68 TraesCS4D01G150000 chr5D 78.667 1786 288 75 6425 8156 447875416 447873670 0.000000e+00 1101.0
69 TraesCS4D01G150000 chr5D 90.566 106 8 1 8384 8489 527153548 527153445 1.240000e-28 139.0
70 TraesCS4D01G150000 chr5D 89.189 111 11 1 8381 8490 362402921 362403031 4.460000e-28 137.0
71 TraesCS4D01G150000 chr5D 88.889 108 10 2 8384 8490 552030620 552030726 2.070000e-26 132.0
72 TraesCS4D01G150000 chr5D 88.785 107 11 1 8385 8490 351468220 351468114 7.460000e-26 130.0
73 TraesCS4D01G150000 chr5B 77.828 1786 299 76 6425 8156 546810523 546808781 0.000000e+00 1014.0
74 TraesCS4D01G150000 chr5B 95.109 184 8 1 1687 1870 377216362 377216544 1.160000e-73 289.0
75 TraesCS4D01G150000 chr5B 98.876 89 1 0 8990 9078 45261720 45261632 9.510000e-35 159.0
76 TraesCS4D01G150000 chrUn 84.592 649 99 1 6710 7357 55736545 55735897 2.150000e-180 643.0
77 TraesCS4D01G150000 chrUn 96.739 184 5 1 1687 1870 30689238 30689420 1.150000e-78 305.0
78 TraesCS4D01G150000 chrUn 98.851 87 1 0 8989 9075 17270421 17270335 1.230000e-33 156.0
79 TraesCS4D01G150000 chrUn 97.727 88 2 0 8990 9077 228573597 228573510 1.590000e-32 152.0
80 TraesCS4D01G150000 chrUn 97.727 88 2 0 8990 9077 330649248 330649335 1.590000e-32 152.0
81 TraesCS4D01G150000 chrUn 97.701 87 2 0 8990 9076 37384502 37384416 5.720000e-32 150.0
82 TraesCS4D01G150000 chrUn 97.701 87 2 0 8990 9076 37384417 37384503 5.720000e-32 150.0
83 TraesCS4D01G150000 chrUn 97.674 86 2 0 8990 9075 31480554 31480469 2.060000e-31 148.0
84 TraesCS4D01G150000 chrUn 97.674 86 2 0 8990 9075 31480469 31480554 2.060000e-31 148.0
85 TraesCS4D01G150000 chrUn 96.667 90 2 1 8990 9078 228573512 228573601 2.060000e-31 148.0
86 TraesCS4D01G150000 chrUn 96.629 89 3 0 8988 9076 248121878 248121966 2.060000e-31 148.0
87 TraesCS4D01G150000 chrUn 93.939 99 5 1 8981 9078 272887435 272887337 2.060000e-31 148.0
88 TraesCS4D01G150000 chrUn 93.939 99 5 1 8981 9078 299202907 299203005 2.060000e-31 148.0
89 TraesCS4D01G150000 chrUn 84.677 124 14 5 8381 8500 25997124 25997002 1.610000e-22 119.0
90 TraesCS4D01G150000 chrUn 84.677 124 14 5 8381 8500 26076516 26076394 1.610000e-22 119.0
91 TraesCS4D01G150000 chrUn 84.677 124 14 5 8381 8500 26109071 26108949 1.610000e-22 119.0
92 TraesCS4D01G150000 chrUn 84.677 124 14 5 8381 8500 183929801 183929923 1.610000e-22 119.0
93 TraesCS4D01G150000 chrUn 84.677 124 14 5 8381 8500 210968704 210968582 1.610000e-22 119.0
94 TraesCS4D01G150000 chrUn 84.677 124 14 5 8381 8500 226923760 226923882 1.610000e-22 119.0
95 TraesCS4D01G150000 chrUn 84.677 124 14 5 8381 8500 253004873 253004751 1.610000e-22 119.0
96 TraesCS4D01G150000 chrUn 84.677 124 14 5 8381 8500 255745425 255745547 1.610000e-22 119.0
97 TraesCS4D01G150000 chrUn 84.677 124 14 5 8381 8500 267375264 267375386 1.610000e-22 119.0
98 TraesCS4D01G150000 chr3B 87.354 514 31 6 8513 8992 446713812 446713299 8.030000e-155 558.0
99 TraesCS4D01G150000 chr3B 82.879 514 47 19 8517 8991 221816930 221816419 3.050000e-114 424.0
100 TraesCS4D01G150000 chr3B 80.660 424 67 12 6584 7000 570068866 570068451 1.920000e-81 315.0
101 TraesCS4D01G150000 chr3B 95.050 101 3 2 8982 9080 787556047 787555947 3.420000e-34 158.0
102 TraesCS4D01G150000 chr3B 94.949 99 4 1 8981 9078 125856737 125856835 4.430000e-33 154.0
103 TraesCS4D01G150000 chr3B 98.305 59 1 0 9094 9152 446713268 446713210 4.520000e-18 104.0
104 TraesCS4D01G150000 chr1B 86.628 516 30 8 8516 8992 612826386 612825871 1.350000e-147 534.0
105 TraesCS4D01G150000 chr1B 95.876 97 3 1 8982 9077 5749357 5749453 1.230000e-33 156.0
106 TraesCS4D01G150000 chr1B 90.598 117 9 2 8374 8490 445432055 445431941 4.430000e-33 154.0
107 TraesCS4D01G150000 chr1B 94.681 94 3 2 8983 9075 156585810 156585902 2.660000e-30 145.0
108 TraesCS4D01G150000 chr3D 97.338 263 7 0 6137 6399 615102128 615102390 1.810000e-121 448.0
109 TraesCS4D01G150000 chr3D 96.629 267 7 2 6133 6397 21415174 21414908 8.430000e-120 442.0
110 TraesCS4D01G150000 chr3D 96.241 266 9 1 6133 6397 21437721 21437456 1.410000e-117 435.0
111 TraesCS4D01G150000 chr3D 93.238 281 15 3 6137 6413 599447085 599446805 2.380000e-110 411.0
112 TraesCS4D01G150000 chr3D 93.069 101 5 2 8978 9076 465530551 465530651 7.410000e-31 147.0
113 TraesCS4D01G150000 chr6B 95.185 270 11 1 6137 6406 550778182 550777915 8.490000e-115 425.0
114 TraesCS4D01G150000 chr6B 95.802 262 11 0 6137 6398 583188973 583189234 3.050000e-114 424.0
115 TraesCS4D01G150000 chr6B 94.898 98 3 2 8984 9080 229724670 229724574 1.590000e-32 152.0
116 TraesCS4D01G150000 chr6B 94.845 97 4 1 8983 9078 26619175 26619079 5.720000e-32 150.0
117 TraesCS4D01G150000 chr6B 90.351 114 9 2 8377 8490 462683895 462684006 2.060000e-31 148.0
118 TraesCS4D01G150000 chr1A 95.161 186 7 2 1687 1871 7949502 7949686 8.990000e-75 292.0
119 TraesCS4D01G150000 chr1A 94.624 186 10 0 1687 1872 271887431 271887616 1.160000e-73 289.0
120 TraesCS4D01G150000 chr1A 90.566 106 10 0 8385 8490 115437175 115437280 3.450000e-29 141.0
121 TraesCS4D01G150000 chr1A 86.885 122 16 0 8385 8506 313736215 313736094 4.460000e-28 137.0
122 TraesCS4D01G150000 chr2B 98.889 90 1 0 8986 9075 297439028 297438939 2.640000e-35 161.0
123 TraesCS4D01G150000 chr7D 92.453 106 8 0 8385 8490 185178056 185178161 1.590000e-32 152.0
124 TraesCS4D01G150000 chr7D 89.091 110 12 0 8386 8495 262998304 262998413 4.460000e-28 137.0
125 TraesCS4D01G150000 chr3A 91.818 110 8 1 8970 9079 708819299 708819191 1.590000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G150000 chr4D 164875062 164884213 9151 False 16901.000000 16901 100.000000 1 9152 1 chr4D.!!$F4 9151
1 TraesCS4D01G150000 chr4D 242938196 242938967 771 False 1336.000000 1336 97.927000 4766 5536 1 chr4D.!!$F5 770
2 TraesCS4D01G150000 chr4D 315342920 315343772 852 True 1221.000000 1221 92.640000 1 848 1 chr4D.!!$R4 847
3 TraesCS4D01G150000 chr4D 130571070 130571702 632 True 654.000000 654 85.308000 6710 7342 1 chr4D.!!$R3 632
4 TraesCS4D01G150000 chr4B 207092993 207096897 3904 False 6386.000000 6386 96.165000 838 4754 1 chr4B.!!$F2 3916
5 TraesCS4D01G150000 chr4B 207101494 207104114 2620 False 1479.666667 3328 95.363000 5564 8356 3 chr4B.!!$F4 2792
6 TraesCS4D01G150000 chr4A 385768119 385774420 6301 False 1203.412500 3441 95.945375 838 8386 8 chr4A.!!$F3 7548
7 TraesCS4D01G150000 chr4A 436383659 436384291 632 False 643.000000 643 84.992000 6710 7342 1 chr4A.!!$F2 632
8 TraesCS4D01G150000 chr6D 160204399 160205169 770 True 1347.000000 1347 98.184000 4766 5536 1 chr6D.!!$R1 770
9 TraesCS4D01G150000 chr2D 360483600 360484370 770 True 1341.000000 1341 98.054000 4766 5536 1 chr2D.!!$R2 770
10 TraesCS4D01G150000 chr2D 136426038 136426808 770 False 1330.000000 1330 97.795000 4766 5536 1 chr2D.!!$F1 770
11 TraesCS4D01G150000 chr1D 223523804 223524574 770 False 1341.000000 1341 98.054000 4766 5536 1 chr1D.!!$F2 770
12 TraesCS4D01G150000 chr1D 105954657 105955427 770 True 1330.000000 1330 97.795000 4766 5536 1 chr1D.!!$R4 770
13 TraesCS4D01G150000 chr1D 68586936 68587774 838 True 1303.000000 1303 94.787000 2 837 1 chr1D.!!$R3 835
14 TraesCS4D01G150000 chr1D 390500184 390501033 849 False 1227.000000 1227 92.849000 2 846 1 chr1D.!!$F4 844
15 TraesCS4D01G150000 chr1D 422918961 422919791 830 True 1197.000000 1197 92.814000 19 843 1 chr1D.!!$R5 824
16 TraesCS4D01G150000 chr1D 360074152 360074994 842 False 1173.000000 1173 91.892000 1 842 1 chr1D.!!$F3 841
17 TraesCS4D01G150000 chr6A 410901512 410902282 770 True 1336.000000 1336 97.925000 4766 5536 1 chr6A.!!$R2 770
18 TraesCS4D01G150000 chr6A 426806521 426807360 839 False 1192.000000 1192 92.417000 4 837 1 chr6A.!!$F3 833
19 TraesCS4D01G150000 chr7B 531650717 531651486 769 True 1334.000000 1334 97.922000 4766 5535 1 chr7B.!!$R2 769
20 TraesCS4D01G150000 chr7A 664227991 664228759 768 True 1332.000000 1332 97.919000 4766 5534 1 chr7A.!!$R2 768
21 TraesCS4D01G150000 chr2A 448480612 448481461 849 True 1223.000000 1223 92.732000 1 846 1 chr2A.!!$R2 845
22 TraesCS4D01G150000 chr2A 448445792 448446645 853 True 1221.000000 1221 92.632000 1 846 1 chr2A.!!$R1 845
23 TraesCS4D01G150000 chr5A 323985879 323986722 843 False 1205.000000 1205 92.562000 1 838 1 chr5A.!!$F1 837
24 TraesCS4D01G150000 chr5A 565742016 565743758 1742 True 1061.000000 1061 78.363000 6425 8145 1 chr5A.!!$R2 1720
25 TraesCS4D01G150000 chr5D 447873670 447875416 1746 True 1101.000000 1101 78.667000 6425 8156 1 chr5D.!!$R2 1731
26 TraesCS4D01G150000 chr5B 546808781 546810523 1742 True 1014.000000 1014 77.828000 6425 8156 1 chr5B.!!$R2 1731
27 TraesCS4D01G150000 chrUn 55735897 55736545 648 True 643.000000 643 84.592000 6710 7357 1 chrUn.!!$R7 647
28 TraesCS4D01G150000 chr3B 221816419 221816930 511 True 424.000000 424 82.879000 8517 8991 1 chr3B.!!$R1 474
29 TraesCS4D01G150000 chr3B 446713210 446713812 602 True 331.000000 558 92.829500 8513 9152 2 chr3B.!!$R4 639
30 TraesCS4D01G150000 chr1B 612825871 612826386 515 True 534.000000 534 86.628000 8516 8992 1 chr1B.!!$R2 476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 269 0.240945 GTTGGAAAGTGCACATCCGG 59.759 55.000 26.90 0.00 35.96 5.14 F
808 825 0.868406 CAAAACAGCGGAGTGAGACC 59.132 55.000 0.00 0.00 0.00 3.85 F
1937 2056 1.613630 CCCCAGCAGGAGGTACAGT 60.614 63.158 0.00 0.00 38.24 3.55 F
2595 2742 0.461163 GGGCACGCCAAAAGTTTGTT 60.461 50.000 10.83 0.00 36.45 2.83 F
2973 3120 1.249407 TTTGCTGATGTGCATGCTCA 58.751 45.000 23.37 23.37 42.96 4.26 F
4532 4846 0.319211 TGGTAGCACGTTCCAGTTCG 60.319 55.000 0.00 0.00 0.00 3.95 F
6151 6477 1.918262 TCTAGTACTCCCTCCGTTCCA 59.082 52.381 0.00 0.00 0.00 3.53 F
6903 7236 1.671379 GTTTGAGGGAGCACCGGTC 60.671 63.158 2.59 0.00 46.96 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2120 2.389059 CATGTTCTCTATCACGCTCCG 58.611 52.381 0.00 0.00 0.00 4.63 R
2468 2614 0.099436 GCTCAAGCAAAGCATACCCG 59.901 55.000 0.00 0.00 41.59 5.28 R
2973 3120 0.682852 AGCCATTTTGCTGTGCATGT 59.317 45.000 0.00 0.00 40.90 3.21 R
4156 4465 2.554636 CGCTTGCTGTTTCAGGGCA 61.555 57.895 0.00 0.00 31.21 5.36 R
4956 5270 0.107703 GGCGTCACTTCATCCATCCA 60.108 55.000 0.00 0.00 0.00 3.41 R
6323 6649 1.846007 TGCCAACTTTGACCAAGTGT 58.154 45.000 0.00 0.00 45.77 3.55 R
7410 7763 3.531538 AGTTTCTGTCAGAAAGCAACGA 58.468 40.909 25.06 2.76 44.07 3.85 R
8507 8991 0.167908 TAGCAGCGCCGAAAAACATG 59.832 50.000 2.29 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.734918 AGGGATAATTAGATTTATGCCCCA 57.265 37.500 10.09 0.00 45.97 4.96
41 42 1.663695 CAAGTTGTGTCCCACTCGTT 58.336 50.000 0.00 0.00 35.11 3.85
52 53 2.173143 TCCCACTCGTTTGTTTTACCCT 59.827 45.455 0.00 0.00 0.00 4.34
264 269 0.240945 GTTGGAAAGTGCACATCCGG 59.759 55.000 26.90 0.00 35.96 5.14
288 293 5.873179 TTTTAGCTCTTTTGATACCACCG 57.127 39.130 0.00 0.00 0.00 4.94
357 364 4.574828 ACGACAAATGTTCTAAGTGCTTGT 59.425 37.500 0.00 0.00 0.00 3.16
408 415 7.473735 TGGAAGTCATGGCAAACAAATAATA 57.526 32.000 0.00 0.00 0.00 0.98
586 595 5.601662 CATAAGAGCTAAAACTCGGATGGA 58.398 41.667 0.00 0.00 41.77 3.41
670 680 7.032580 CCGAACATTTTGGTATCTTATTTGCA 58.967 34.615 0.00 0.00 0.00 4.08
768 785 3.536956 AAGTGACTTGGACAGAAACGA 57.463 42.857 0.00 0.00 0.00 3.85
772 789 3.997021 GTGACTTGGACAGAAACGATGAT 59.003 43.478 0.00 0.00 0.00 2.45
777 794 7.227711 TGACTTGGACAGAAACGATGATTTTTA 59.772 33.333 0.00 0.00 0.00 1.52
798 815 2.741759 AAATTAGGGGCAAAACAGCG 57.258 45.000 0.00 0.00 34.64 5.18
808 825 0.868406 CAAAACAGCGGAGTGAGACC 59.132 55.000 0.00 0.00 0.00 3.85
813 830 1.837051 AGCGGAGTGAGACCCAACA 60.837 57.895 0.00 0.00 0.00 3.33
1278 1310 2.223971 GCGGGGATTCTCGATTGTTAGA 60.224 50.000 0.00 0.00 0.00 2.10
1451 1483 9.502091 TTTTGTTAAGCTACTTGTATGTCATCT 57.498 29.630 0.00 0.00 0.00 2.90
1609 1643 2.086869 CTTCAAGCGGTCCATTGATGT 58.913 47.619 7.22 0.00 35.47 3.06
1658 1692 7.807977 ATGTTCCTTAATGTATGGTGATCAC 57.192 36.000 17.91 17.91 0.00 3.06
1686 1720 6.782824 CGTCGTTGATGAAAGAATATCATTCG 59.217 38.462 0.00 0.00 37.64 3.34
1726 1760 7.081526 CATCTAGATGTGCCCTAATTATTGC 57.918 40.000 22.42 0.62 34.23 3.56
1738 1772 6.294176 GCCCTAATTATTGCACATCTAAGTGG 60.294 42.308 0.00 0.00 39.87 4.00
1763 1797 5.689068 GTGAATCAAGCACAAAGAGGAAAAG 59.311 40.000 0.00 0.00 36.31 2.27
1767 1801 6.279513 TCAAGCACAAAGAGGAAAAGAAAA 57.720 33.333 0.00 0.00 0.00 2.29
1937 2056 1.613630 CCCCAGCAGGAGGTACAGT 60.614 63.158 0.00 0.00 38.24 3.55
1951 2070 2.622436 GTACAGTCACATGAGGGAAGC 58.378 52.381 0.00 0.00 0.00 3.86
2001 2120 1.614413 ACGAGAGAAGGACAAGGACAC 59.386 52.381 0.00 0.00 0.00 3.67
2152 2298 1.795286 GAGCACCGTGAAAGAAGTGAG 59.205 52.381 1.65 0.00 31.79 3.51
2208 2354 3.690280 TCATCGCAGCCGTGACCA 61.690 61.111 0.00 0.00 33.61 4.02
2468 2614 3.756117 CATTATAGGTTTCCAGGCCTCC 58.244 50.000 0.00 0.00 36.38 4.30
2594 2741 1.142965 GGGCACGCCAAAAGTTTGT 59.857 52.632 10.83 0.00 36.45 2.83
2595 2742 0.461163 GGGCACGCCAAAAGTTTGTT 60.461 50.000 10.83 0.00 36.45 2.83
2621 2768 5.476945 ACCATCCAAATAAAGACCACAGTTC 59.523 40.000 0.00 0.00 0.00 3.01
2649 2796 8.863049 GGCTATGACAGAAAATTGTTAATGTTG 58.137 33.333 0.00 0.00 0.00 3.33
2656 2803 8.478877 ACAGAAAATTGTTAATGTTGGTTGGTA 58.521 29.630 0.00 0.00 0.00 3.25
2693 2840 5.374080 CAAACACTAACAATACTCTGCACG 58.626 41.667 0.00 0.00 0.00 5.34
2827 2974 6.088824 CCTTAACATGAGAAGTTGAACATGC 58.911 40.000 0.00 0.00 42.28 4.06
2973 3120 1.249407 TTTGCTGATGTGCATGCTCA 58.751 45.000 23.37 23.37 42.96 4.26
3347 3653 7.473366 TCACGATAGAAATGAGTTGTAGAGTC 58.527 38.462 0.00 0.00 41.38 3.36
3348 3654 7.120726 TCACGATAGAAATGAGTTGTAGAGTCA 59.879 37.037 0.00 0.00 40.09 3.41
3363 3669 2.135933 GAGTCACGTTTTGGAGAGTGG 58.864 52.381 0.00 0.00 35.50 4.00
3591 3898 3.149196 GCCAAGTCATGTTTTCTGGAGA 58.851 45.455 0.00 0.00 0.00 3.71
3958 4266 7.649705 CGTCACAGATACTATTCTTGTATGCTT 59.350 37.037 0.00 0.00 31.55 3.91
4002 4311 3.959535 AATCCATGCATTGGTTTCGTT 57.040 38.095 0.00 0.00 46.52 3.85
4143 4452 6.613755 TTTCCTGCTTGTTGAACTACTTAC 57.386 37.500 0.00 0.00 0.00 2.34
4156 4465 5.046591 TGAACTACTTACATAACTGCCTGCT 60.047 40.000 0.00 0.00 0.00 4.24
4336 4649 7.044798 AGATGATCTGTTAAGGAACTGCTAAC 58.955 38.462 0.00 0.00 40.86 2.34
4532 4846 0.319211 TGGTAGCACGTTCCAGTTCG 60.319 55.000 0.00 0.00 0.00 3.95
4541 4855 5.410439 AGCACGTTCCAGTTCGTAAATATTT 59.590 36.000 5.89 5.89 38.52 1.40
4549 4863 7.299586 TCCAGTTCGTAAATATTTTTGGTTCG 58.700 34.615 5.91 3.36 0.00 3.95
4630 4944 3.430790 GCAACTTTCCTCTTTGGCTTGTT 60.431 43.478 0.00 0.00 35.26 2.83
4651 4965 5.932303 TGTTACCAGAAATTGACTGAGCTAC 59.068 40.000 12.56 7.16 37.54 3.58
4753 5067 9.527157 TGTTGTGGGAATGATATTTTCTTAAGA 57.473 29.630 0.00 0.00 0.00 2.10
4754 5068 9.788960 GTTGTGGGAATGATATTTTCTTAAGAC 57.211 33.333 4.18 0.00 0.00 3.01
4755 5069 9.753674 TTGTGGGAATGATATTTTCTTAAGACT 57.246 29.630 4.18 0.00 0.00 3.24
4756 5070 9.753674 TGTGGGAATGATATTTTCTTAAGACTT 57.246 29.630 4.18 0.00 0.00 3.01
4758 5072 9.753674 TGGGAATGATATTTTCTTAAGACTTGT 57.246 29.630 4.18 0.00 0.00 3.16
4956 5270 3.411446 TGTGAACCATCGAATCAAAGCT 58.589 40.909 0.00 0.00 0.00 3.74
5292 5606 3.275338 GCTCCAGTGCATAGCGGC 61.275 66.667 0.00 0.00 0.00 6.53
5537 5851 5.394904 GCTTTGTTGTTGTTGTTGTTGTTTG 59.605 36.000 0.00 0.00 0.00 2.93
5538 5852 6.422776 TTTGTTGTTGTTGTTGTTGTTTGT 57.577 29.167 0.00 0.00 0.00 2.83
5619 5933 6.692486 TCTTTTGCTGTTCTTGGTTTTTGTA 58.308 32.000 0.00 0.00 0.00 2.41
5975 6293 2.047274 GTCAGCTGCCCGCAGTTA 60.047 61.111 17.51 1.65 45.24 2.24
6138 6464 7.969508 GTGACAGAATGAACCTAACTCTAGTAC 59.030 40.741 0.00 0.00 39.69 2.73
6139 6465 7.889073 TGACAGAATGAACCTAACTCTAGTACT 59.111 37.037 0.00 0.00 39.69 2.73
6140 6466 8.283699 ACAGAATGAACCTAACTCTAGTACTC 57.716 38.462 0.00 0.00 39.69 2.59
6141 6467 7.339976 ACAGAATGAACCTAACTCTAGTACTCC 59.660 40.741 0.00 0.00 39.69 3.85
6142 6468 6.834969 AGAATGAACCTAACTCTAGTACTCCC 59.165 42.308 0.00 0.00 0.00 4.30
6143 6469 5.793034 TGAACCTAACTCTAGTACTCCCT 57.207 43.478 0.00 0.00 0.00 4.20
6144 6470 5.753716 TGAACCTAACTCTAGTACTCCCTC 58.246 45.833 0.00 0.00 0.00 4.30
6145 6471 4.794311 ACCTAACTCTAGTACTCCCTCC 57.206 50.000 0.00 0.00 0.00 4.30
6146 6472 3.136260 ACCTAACTCTAGTACTCCCTCCG 59.864 52.174 0.00 0.00 0.00 4.63
6147 6473 3.136260 CCTAACTCTAGTACTCCCTCCGT 59.864 52.174 0.00 0.00 0.00 4.69
6148 6474 3.735720 AACTCTAGTACTCCCTCCGTT 57.264 47.619 0.00 0.00 0.00 4.44
6149 6475 3.280197 ACTCTAGTACTCCCTCCGTTC 57.720 52.381 0.00 0.00 0.00 3.95
6150 6476 2.092484 ACTCTAGTACTCCCTCCGTTCC 60.092 54.545 0.00 0.00 0.00 3.62
6151 6477 1.918262 TCTAGTACTCCCTCCGTTCCA 59.082 52.381 0.00 0.00 0.00 3.53
6152 6478 2.512896 TCTAGTACTCCCTCCGTTCCAT 59.487 50.000 0.00 0.00 0.00 3.41
6153 6479 3.718434 TCTAGTACTCCCTCCGTTCCATA 59.282 47.826 0.00 0.00 0.00 2.74
6154 6480 3.393426 AGTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
6155 6481 3.924922 AGTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
6156 6482 5.070823 AGTACTCCCTCCGTTCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
6157 6483 5.652324 AGTACTCCCTCCGTTCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
6158 6484 6.797707 AGTACTCCCTCCGTTCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
6159 6485 6.890814 AGTACTCCCTCCGTTCCATAATATAG 59.109 42.308 0.00 0.00 0.00 1.31
6160 6486 5.652324 ACTCCCTCCGTTCCATAATATAGT 58.348 41.667 0.00 0.00 0.00 2.12
6161 6487 5.480772 ACTCCCTCCGTTCCATAATATAGTG 59.519 44.000 0.00 0.00 0.00 2.74
6162 6488 4.222145 TCCCTCCGTTCCATAATATAGTGC 59.778 45.833 0.00 0.00 0.00 4.40
6163 6489 4.504858 CCTCCGTTCCATAATATAGTGCC 58.495 47.826 0.00 0.00 0.00 5.01
6164 6490 4.223032 CCTCCGTTCCATAATATAGTGCCT 59.777 45.833 0.00 0.00 0.00 4.75
6165 6491 5.421056 CCTCCGTTCCATAATATAGTGCCTA 59.579 44.000 0.00 0.00 0.00 3.93
6166 6492 6.098409 CCTCCGTTCCATAATATAGTGCCTAT 59.902 42.308 1.18 1.18 0.00 2.57
6167 6493 7.287005 CCTCCGTTCCATAATATAGTGCCTATA 59.713 40.741 4.91 4.91 34.07 1.31
6168 6494 8.234136 TCCGTTCCATAATATAGTGCCTATAG 57.766 38.462 7.64 0.00 33.22 1.31
6169 6495 8.057011 TCCGTTCCATAATATAGTGCCTATAGA 58.943 37.037 0.00 1.10 33.22 1.98
6170 6496 8.861086 CCGTTCCATAATATAGTGCCTATAGAT 58.139 37.037 0.00 0.00 33.22 1.98
6184 6510 9.515226 AGTGCCTATAGATTTTTACAAAAGTCA 57.485 29.630 0.00 0.87 37.17 3.41
6201 6527 8.716909 ACAAAAGTCAAACATTACAAACTTTGG 58.283 29.630 6.47 0.00 37.12 3.28
6202 6528 8.716909 CAAAAGTCAAACATTACAAACTTTGGT 58.283 29.630 6.47 0.00 37.12 3.67
6203 6529 8.474006 AAAGTCAAACATTACAAACTTTGGTC 57.526 30.769 6.47 0.00 36.06 4.02
6204 6530 7.164230 AGTCAAACATTACAAACTTTGGTCA 57.836 32.000 6.47 0.00 34.12 4.02
6205 6531 7.781056 AGTCAAACATTACAAACTTTGGTCAT 58.219 30.769 6.47 0.00 34.12 3.06
6206 6532 7.706179 AGTCAAACATTACAAACTTTGGTCATG 59.294 33.333 6.47 7.20 34.12 3.07
6207 6533 7.491048 GTCAAACATTACAAACTTTGGTCATGT 59.509 33.333 6.47 7.73 33.07 3.21
6208 6534 8.037758 TCAAACATTACAAACTTTGGTCATGTT 58.962 29.630 15.68 15.68 38.86 2.71
6209 6535 8.663911 CAAACATTACAAACTTTGGTCATGTTT 58.336 29.630 21.36 21.36 42.68 2.83
6210 6536 8.419076 AACATTACAAACTTTGGTCATGTTTC 57.581 30.769 15.68 0.00 36.28 2.78
6211 6537 7.781056 ACATTACAAACTTTGGTCATGTTTCT 58.219 30.769 6.47 0.00 32.42 2.52
6212 6538 8.908903 ACATTACAAACTTTGGTCATGTTTCTA 58.091 29.630 6.47 0.00 32.42 2.10
6213 6539 9.398170 CATTACAAACTTTGGTCATGTTTCTAG 57.602 33.333 6.47 0.00 32.42 2.43
6214 6540 8.740123 TTACAAACTTTGGTCATGTTTCTAGA 57.260 30.769 6.47 0.00 32.42 2.43
6215 6541 7.264373 ACAAACTTTGGTCATGTTTCTAGAG 57.736 36.000 6.47 0.00 32.42 2.43
6216 6542 7.054124 ACAAACTTTGGTCATGTTTCTAGAGA 58.946 34.615 6.47 0.00 32.42 3.10
6217 6543 7.556275 ACAAACTTTGGTCATGTTTCTAGAGAA 59.444 33.333 6.47 0.00 32.42 2.87
6218 6544 8.405531 CAAACTTTGGTCATGTTTCTAGAGAAA 58.594 33.333 0.46 0.46 41.29 2.52
6219 6545 8.519799 AACTTTGGTCATGTTTCTAGAGAAAA 57.480 30.769 6.29 0.00 44.58 2.29
6220 6546 8.159344 ACTTTGGTCATGTTTCTAGAGAAAAG 57.841 34.615 6.29 0.75 44.58 2.27
6221 6547 7.775561 ACTTTGGTCATGTTTCTAGAGAAAAGT 59.224 33.333 6.29 1.31 44.58 2.66
6222 6548 9.273016 CTTTGGTCATGTTTCTAGAGAAAAGTA 57.727 33.333 6.29 0.00 44.58 2.24
6223 6549 8.833231 TTGGTCATGTTTCTAGAGAAAAGTAG 57.167 34.615 6.29 0.00 44.58 2.57
6224 6550 7.386851 TGGTCATGTTTCTAGAGAAAAGTAGG 58.613 38.462 6.29 0.00 44.58 3.18
6225 6551 7.016268 TGGTCATGTTTCTAGAGAAAAGTAGGT 59.984 37.037 6.29 0.00 44.58 3.08
6226 6552 8.529476 GGTCATGTTTCTAGAGAAAAGTAGGTA 58.471 37.037 6.29 0.00 44.58 3.08
6227 6553 9.356433 GTCATGTTTCTAGAGAAAAGTAGGTAC 57.644 37.037 6.29 0.00 44.58 3.34
6228 6554 9.085645 TCATGTTTCTAGAGAAAAGTAGGTACA 57.914 33.333 6.29 0.00 44.58 2.90
6229 6555 9.877178 CATGTTTCTAGAGAAAAGTAGGTACAT 57.123 33.333 6.29 2.04 44.58 2.29
6231 6557 9.310449 TGTTTCTAGAGAAAAGTAGGTACATCT 57.690 33.333 6.29 0.00 44.58 2.90
6240 6566 9.710818 AGAAAAGTAGGTACATCTAGAATACCA 57.289 33.333 26.72 15.98 40.81 3.25
6245 6571 8.368668 AGTAGGTACATCTAGAATACCAAATGC 58.631 37.037 26.72 15.90 40.81 3.56
6246 6572 7.136822 AGGTACATCTAGAATACCAAATGCA 57.863 36.000 26.72 0.00 40.81 3.96
6247 6573 6.992715 AGGTACATCTAGAATACCAAATGCAC 59.007 38.462 26.72 9.05 40.81 4.57
6248 6574 6.765989 GGTACATCTAGAATACCAAATGCACA 59.234 38.462 22.87 0.00 38.61 4.57
6249 6575 7.445402 GGTACATCTAGAATACCAAATGCACAT 59.555 37.037 22.87 0.00 38.61 3.21
6250 6576 7.502120 ACATCTAGAATACCAAATGCACATC 57.498 36.000 0.00 0.00 0.00 3.06
6251 6577 7.056006 ACATCTAGAATACCAAATGCACATCA 58.944 34.615 0.00 0.00 0.00 3.07
6252 6578 7.722728 ACATCTAGAATACCAAATGCACATCAT 59.277 33.333 0.00 0.00 36.87 2.45
6253 6579 8.573885 CATCTAGAATACCAAATGCACATCATT 58.426 33.333 0.00 0.00 46.82 2.57
6254 6580 7.933396 TCTAGAATACCAAATGCACATCATTG 58.067 34.615 0.00 0.00 44.23 2.82
6255 6581 5.909477 AGAATACCAAATGCACATCATTGG 58.091 37.500 11.02 11.02 44.23 3.16
6256 6582 5.657745 AGAATACCAAATGCACATCATTGGA 59.342 36.000 17.12 5.42 44.23 3.53
6257 6583 6.325545 AGAATACCAAATGCACATCATTGGAT 59.674 34.615 17.12 6.97 44.23 3.41
6258 6584 7.506599 AGAATACCAAATGCACATCATTGGATA 59.493 33.333 17.12 8.79 44.23 2.59
6259 6585 5.266733 ACCAAATGCACATCATTGGATAC 57.733 39.130 17.12 0.00 44.23 2.24
6279 6605 9.476202 TGGATACATCGTGAGTTATATTTTCAG 57.524 33.333 0.00 0.00 46.17 3.02
6280 6606 9.692749 GGATACATCGTGAGTTATATTTTCAGA 57.307 33.333 0.00 0.00 0.00 3.27
6284 6610 9.383519 ACATCGTGAGTTATATTTTCAGAATGT 57.616 29.630 0.00 0.00 37.40 2.71
6287 6613 9.863845 TCGTGAGTTATATTTTCAGAATGTACA 57.136 29.630 0.00 0.00 37.40 2.90
6299 6625 9.689976 TTTTCAGAATGTACATGTTTGGTATTG 57.310 29.630 9.63 0.00 37.40 1.90
6300 6626 7.994425 TCAGAATGTACATGTTTGGTATTGT 57.006 32.000 9.63 0.00 37.40 2.71
6301 6627 9.508642 TTCAGAATGTACATGTTTGGTATTGTA 57.491 29.630 9.63 0.00 37.40 2.41
6302 6628 9.161629 TCAGAATGTACATGTTTGGTATTGTAG 57.838 33.333 9.63 0.00 37.40 2.74
6303 6629 9.161629 CAGAATGTACATGTTTGGTATTGTAGA 57.838 33.333 9.63 0.00 0.00 2.59
6304 6630 9.905713 AGAATGTACATGTTTGGTATTGTAGAT 57.094 29.630 9.63 0.00 31.99 1.98
6346 6672 3.525268 CTTGGTCAAAGTTGGCAAAGT 57.475 42.857 0.00 0.00 38.66 2.66
6347 6673 3.860641 CTTGGTCAAAGTTGGCAAAGTT 58.139 40.909 0.00 0.00 38.66 2.66
6348 6674 3.971245 TGGTCAAAGTTGGCAAAGTTT 57.029 38.095 0.00 0.42 39.10 2.66
6356 6682 4.799564 AGTTGGCAAAGTTTGACTTTCA 57.200 36.364 21.83 0.00 44.47 2.69
6357 6683 5.146010 AGTTGGCAAAGTTTGACTTTCAA 57.854 34.783 21.83 5.47 44.47 2.69
6358 6684 5.546526 AGTTGGCAAAGTTTGACTTTCAAA 58.453 33.333 21.83 5.10 44.47 2.69
6359 6685 5.994668 AGTTGGCAAAGTTTGACTTTCAAAA 59.005 32.000 21.83 4.37 44.47 2.44
6360 6686 6.484977 AGTTGGCAAAGTTTGACTTTCAAAAA 59.515 30.769 21.83 3.66 44.47 1.94
6388 6714 2.726821 AGGCACTACATTGTGGAATGG 58.273 47.619 7.20 0.00 43.00 3.16
6389 6715 2.308570 AGGCACTACATTGTGGAATGGA 59.691 45.455 7.20 0.00 43.00 3.41
6393 6719 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
6394 6720 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
6395 6721 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
6396 6722 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
6903 7236 1.671379 GTTTGAGGGAGCACCGGTC 60.671 63.158 2.59 0.00 46.96 4.79
7468 7825 1.188863 GGGCTCTACCGACAAAGGTA 58.811 55.000 0.00 0.00 43.89 3.08
8112 8499 1.198759 AGGTGGTGGCCGTGTTCTAT 61.199 55.000 0.00 0.00 0.00 1.98
8172 8559 3.195396 AGATGAAGTCCTCTGCTCAGTTC 59.805 47.826 0.00 0.00 0.00 3.01
8188 8575 3.200605 TCAGTTCACACCCATATCATGCT 59.799 43.478 0.00 0.00 0.00 3.79
8348 8832 2.485657 GCTGGTATCTTCCCCTTACTGC 60.486 54.545 0.00 0.00 0.00 4.40
8352 8836 2.355010 ATCTTCCCCTTACTGCATGC 57.645 50.000 11.82 11.82 0.00 4.06
8374 8858 7.016153 TGCGGGAAAGGATATATAATGACTT 57.984 36.000 0.00 0.00 0.00 3.01
8395 8879 8.807118 TGACTTATATTATGCTACTTCCTCTGG 58.193 37.037 0.00 0.00 0.00 3.86
8396 8880 8.728596 ACTTATATTATGCTACTTCCTCTGGT 57.271 34.615 0.00 0.00 0.00 4.00
8397 8881 8.808092 ACTTATATTATGCTACTTCCTCTGGTC 58.192 37.037 0.00 0.00 0.00 4.02
8398 8882 8.721133 TTATATTATGCTACTTCCTCTGGTCA 57.279 34.615 0.00 0.00 0.00 4.02
8399 8883 4.737855 TTATGCTACTTCCTCTGGTCAC 57.262 45.455 0.00 0.00 0.00 3.67
8400 8884 2.310779 TGCTACTTCCTCTGGTCACT 57.689 50.000 0.00 0.00 0.00 3.41
8401 8885 2.609747 TGCTACTTCCTCTGGTCACTT 58.390 47.619 0.00 0.00 0.00 3.16
8402 8886 2.972713 TGCTACTTCCTCTGGTCACTTT 59.027 45.455 0.00 0.00 0.00 2.66
8403 8887 3.391296 TGCTACTTCCTCTGGTCACTTTT 59.609 43.478 0.00 0.00 0.00 2.27
8404 8888 3.748568 GCTACTTCCTCTGGTCACTTTTG 59.251 47.826 0.00 0.00 0.00 2.44
8405 8889 3.933861 ACTTCCTCTGGTCACTTTTGT 57.066 42.857 0.00 0.00 0.00 2.83
8406 8890 5.510861 GCTACTTCCTCTGGTCACTTTTGTA 60.511 44.000 0.00 0.00 0.00 2.41
8407 8891 5.367945 ACTTCCTCTGGTCACTTTTGTAA 57.632 39.130 0.00 0.00 0.00 2.41
8408 8892 5.368989 ACTTCCTCTGGTCACTTTTGTAAG 58.631 41.667 0.00 0.00 37.40 2.34
8409 8893 5.130477 ACTTCCTCTGGTCACTTTTGTAAGA 59.870 40.000 0.00 0.00 35.30 2.10
8410 8894 4.957296 TCCTCTGGTCACTTTTGTAAGAC 58.043 43.478 0.00 0.00 35.30 3.01
8418 8902 7.797038 GGTCACTTTTGTAAGACCTTTTAGA 57.203 36.000 0.00 0.00 45.46 2.10
8419 8903 7.637229 GGTCACTTTTGTAAGACCTTTTAGAC 58.363 38.462 0.00 0.00 45.46 2.59
8420 8904 7.281549 GGTCACTTTTGTAAGACCTTTTAGACA 59.718 37.037 0.00 0.00 45.46 3.41
8421 8905 8.837389 GTCACTTTTGTAAGACCTTTTAGACAT 58.163 33.333 0.00 0.00 35.30 3.06
8422 8906 9.403583 TCACTTTTGTAAGACCTTTTAGACATT 57.596 29.630 0.00 0.00 35.30 2.71
8432 8916 8.974060 AGACCTTTTAGACATTTAAGACAACA 57.026 30.769 0.00 0.00 0.00 3.33
8433 8917 8.837389 AGACCTTTTAGACATTTAAGACAACAC 58.163 33.333 0.00 0.00 0.00 3.32
8434 8918 7.937649 ACCTTTTAGACATTTAAGACAACACC 58.062 34.615 0.00 0.00 0.00 4.16
8435 8919 7.778382 ACCTTTTAGACATTTAAGACAACACCT 59.222 33.333 0.00 0.00 0.00 4.00
8436 8920 9.280174 CCTTTTAGACATTTAAGACAACACCTA 57.720 33.333 0.00 0.00 0.00 3.08
8440 8924 7.203255 AGACATTTAAGACAACACCTAAAGC 57.797 36.000 0.00 0.00 0.00 3.51
8441 8925 6.770785 AGACATTTAAGACAACACCTAAAGCA 59.229 34.615 0.00 0.00 0.00 3.91
8442 8926 6.970484 ACATTTAAGACAACACCTAAAGCAG 58.030 36.000 0.00 0.00 0.00 4.24
8443 8927 6.546034 ACATTTAAGACAACACCTAAAGCAGT 59.454 34.615 0.00 0.00 0.00 4.40
8444 8928 7.068226 ACATTTAAGACAACACCTAAAGCAGTT 59.932 33.333 0.00 0.00 0.00 3.16
8445 8929 6.613755 TTAAGACAACACCTAAAGCAGTTC 57.386 37.500 0.00 0.00 0.00 3.01
8446 8930 4.150897 AGACAACACCTAAAGCAGTTCA 57.849 40.909 0.00 0.00 0.00 3.18
8447 8931 4.523083 AGACAACACCTAAAGCAGTTCAA 58.477 39.130 0.00 0.00 0.00 2.69
8448 8932 5.133221 AGACAACACCTAAAGCAGTTCAAT 58.867 37.500 0.00 0.00 0.00 2.57
8449 8933 5.594317 AGACAACACCTAAAGCAGTTCAATT 59.406 36.000 0.00 0.00 0.00 2.32
8450 8934 6.096846 AGACAACACCTAAAGCAGTTCAATTT 59.903 34.615 0.00 0.00 0.00 1.82
8451 8935 6.273071 ACAACACCTAAAGCAGTTCAATTTC 58.727 36.000 0.00 0.00 0.00 2.17
8452 8936 6.127479 ACAACACCTAAAGCAGTTCAATTTCA 60.127 34.615 0.00 0.00 0.00 2.69
8453 8937 6.076981 ACACCTAAAGCAGTTCAATTTCAG 57.923 37.500 0.00 0.00 0.00 3.02
8454 8938 4.919754 CACCTAAAGCAGTTCAATTTCAGC 59.080 41.667 0.00 0.00 0.00 4.26
8455 8939 4.829492 ACCTAAAGCAGTTCAATTTCAGCT 59.171 37.500 0.00 0.00 0.00 4.24
8456 8940 5.159209 CCTAAAGCAGTTCAATTTCAGCTG 58.841 41.667 7.63 7.63 31.88 4.24
8457 8941 4.660789 AAAGCAGTTCAATTTCAGCTGT 57.339 36.364 14.67 0.00 31.88 4.40
8458 8942 3.911661 AGCAGTTCAATTTCAGCTGTC 57.088 42.857 14.67 0.00 0.00 3.51
8459 8943 3.484407 AGCAGTTCAATTTCAGCTGTCT 58.516 40.909 14.67 0.00 0.00 3.41
8460 8944 3.887716 AGCAGTTCAATTTCAGCTGTCTT 59.112 39.130 14.67 3.02 0.00 3.01
8461 8945 5.065914 AGCAGTTCAATTTCAGCTGTCTTA 58.934 37.500 14.67 0.00 0.00 2.10
8462 8946 5.532406 AGCAGTTCAATTTCAGCTGTCTTAA 59.468 36.000 14.67 4.81 0.00 1.85
8463 8947 6.039717 AGCAGTTCAATTTCAGCTGTCTTAAA 59.960 34.615 14.67 7.20 0.00 1.52
8464 8948 6.865205 GCAGTTCAATTTCAGCTGTCTTAAAT 59.135 34.615 14.67 9.34 29.84 1.40
8465 8949 7.148853 GCAGTTCAATTTCAGCTGTCTTAAATG 60.149 37.037 14.67 11.76 29.34 2.32
8466 8950 6.865205 AGTTCAATTTCAGCTGTCTTAAATGC 59.135 34.615 14.67 4.65 29.34 3.56
8467 8951 5.713025 TCAATTTCAGCTGTCTTAAATGCC 58.287 37.500 14.67 0.00 29.34 4.40
8468 8952 5.243507 TCAATTTCAGCTGTCTTAAATGCCA 59.756 36.000 14.67 0.00 29.34 4.92
8469 8953 5.927281 ATTTCAGCTGTCTTAAATGCCAT 57.073 34.783 14.67 0.00 28.11 4.40
8470 8954 7.122501 TCAATTTCAGCTGTCTTAAATGCCATA 59.877 33.333 14.67 0.00 29.34 2.74
8471 8955 5.818136 TTCAGCTGTCTTAAATGCCATAC 57.182 39.130 14.67 0.00 0.00 2.39
8472 8956 4.842574 TCAGCTGTCTTAAATGCCATACA 58.157 39.130 14.67 0.00 0.00 2.29
8473 8957 5.252547 TCAGCTGTCTTAAATGCCATACAA 58.747 37.500 14.67 0.00 0.00 2.41
8474 8958 5.709631 TCAGCTGTCTTAAATGCCATACAAA 59.290 36.000 14.67 0.00 0.00 2.83
8475 8959 6.208402 TCAGCTGTCTTAAATGCCATACAAAA 59.792 34.615 14.67 0.00 0.00 2.44
8476 8960 6.529125 CAGCTGTCTTAAATGCCATACAAAAG 59.471 38.462 5.25 0.00 0.00 2.27
8477 8961 6.209391 AGCTGTCTTAAATGCCATACAAAAGT 59.791 34.615 0.00 0.00 0.00 2.66
8478 8962 6.308766 GCTGTCTTAAATGCCATACAAAAGTG 59.691 38.462 0.00 0.00 0.00 3.16
8479 8963 7.517614 TGTCTTAAATGCCATACAAAAGTGA 57.482 32.000 0.00 0.00 0.00 3.41
8480 8964 7.946207 TGTCTTAAATGCCATACAAAAGTGAA 58.054 30.769 0.00 0.00 0.00 3.18
8481 8965 7.865385 TGTCTTAAATGCCATACAAAAGTGAAC 59.135 33.333 0.00 0.00 0.00 3.18
8482 8966 7.865385 GTCTTAAATGCCATACAAAAGTGAACA 59.135 33.333 0.00 0.00 0.00 3.18
8483 8967 8.081633 TCTTAAATGCCATACAAAAGTGAACAG 58.918 33.333 0.00 0.00 0.00 3.16
8484 8968 6.403866 AAATGCCATACAAAAGTGAACAGA 57.596 33.333 0.00 0.00 0.00 3.41
8485 8969 5.633830 ATGCCATACAAAAGTGAACAGAG 57.366 39.130 0.00 0.00 0.00 3.35
8486 8970 3.820467 TGCCATACAAAAGTGAACAGAGG 59.180 43.478 0.00 0.00 0.00 3.69
8487 8971 3.191371 GCCATACAAAAGTGAACAGAGGG 59.809 47.826 0.00 0.00 0.00 4.30
8488 8972 4.651778 CCATACAAAAGTGAACAGAGGGA 58.348 43.478 0.00 0.00 0.00 4.20
8489 8973 4.697352 CCATACAAAAGTGAACAGAGGGAG 59.303 45.833 0.00 0.00 0.00 4.30
8490 8974 2.576615 ACAAAAGTGAACAGAGGGAGC 58.423 47.619 0.00 0.00 0.00 4.70
8491 8975 2.092429 ACAAAAGTGAACAGAGGGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
8492 8976 3.152341 CAAAAGTGAACAGAGGGAGCAT 58.848 45.455 0.00 0.00 0.00 3.79
8493 8977 3.515602 AAAGTGAACAGAGGGAGCATT 57.484 42.857 0.00 0.00 0.00 3.56
8494 8978 4.640771 AAAGTGAACAGAGGGAGCATTA 57.359 40.909 0.00 0.00 0.00 1.90
8495 8979 4.640771 AAGTGAACAGAGGGAGCATTAA 57.359 40.909 0.00 0.00 0.00 1.40
8496 8980 4.640771 AGTGAACAGAGGGAGCATTAAA 57.359 40.909 0.00 0.00 0.00 1.52
8497 8981 4.583871 AGTGAACAGAGGGAGCATTAAAG 58.416 43.478 0.00 0.00 0.00 1.85
8498 8982 3.691609 GTGAACAGAGGGAGCATTAAAGG 59.308 47.826 0.00 0.00 0.00 3.11
8499 8983 3.587061 TGAACAGAGGGAGCATTAAAGGA 59.413 43.478 0.00 0.00 0.00 3.36
8500 8984 4.228210 TGAACAGAGGGAGCATTAAAGGAT 59.772 41.667 0.00 0.00 0.00 3.24
8501 8985 4.870021 ACAGAGGGAGCATTAAAGGATT 57.130 40.909 0.00 0.00 0.00 3.01
8502 8986 4.530875 ACAGAGGGAGCATTAAAGGATTG 58.469 43.478 0.00 0.00 0.00 2.67
8503 8987 4.018050 ACAGAGGGAGCATTAAAGGATTGT 60.018 41.667 0.00 0.00 0.00 2.71
8504 8988 5.191722 ACAGAGGGAGCATTAAAGGATTGTA 59.808 40.000 0.00 0.00 0.00 2.41
8505 8989 6.122277 CAGAGGGAGCATTAAAGGATTGTAA 58.878 40.000 0.00 0.00 0.00 2.41
8506 8990 6.261826 CAGAGGGAGCATTAAAGGATTGTAAG 59.738 42.308 0.00 0.00 0.00 2.34
8507 8991 4.889995 AGGGAGCATTAAAGGATTGTAAGC 59.110 41.667 0.00 0.00 0.00 3.09
8508 8992 4.644685 GGGAGCATTAAAGGATTGTAAGCA 59.355 41.667 0.00 0.00 0.00 3.91
8509 8993 5.302823 GGGAGCATTAAAGGATTGTAAGCAT 59.697 40.000 0.00 0.00 0.00 3.79
8510 8994 6.211515 GGAGCATTAAAGGATTGTAAGCATG 58.788 40.000 0.00 0.00 0.00 4.06
8511 8995 6.183360 GGAGCATTAAAGGATTGTAAGCATGT 60.183 38.462 0.00 0.00 0.00 3.21
8559 9043 4.756642 CACATTTGTATCGGATGCCTGTAT 59.243 41.667 0.00 0.00 0.00 2.29
8622 9116 2.786495 CGGAGAGGACCATCCACCG 61.786 68.421 14.34 11.54 39.61 4.94
8629 9123 0.814010 GGACCATCCACCGAAATCCG 60.814 60.000 0.00 0.00 36.28 4.18
8656 9150 1.080638 AGACCAACCCATAGCCCAAA 58.919 50.000 0.00 0.00 0.00 3.28
8675 9194 1.561643 AAGCCATCTCTTCTCGTCCA 58.438 50.000 0.00 0.00 0.00 4.02
8753 9284 0.892755 CTGCACATGGATTTGTGGCT 59.107 50.000 6.70 0.00 45.69 4.75
8758 9289 1.355381 ACATGGATTTGTGGCTCTCCA 59.645 47.619 0.00 0.00 41.76 3.86
8795 9326 6.352516 ACATCGCCTTTCTATCTCTTTCATT 58.647 36.000 0.00 0.00 0.00 2.57
8805 9336 7.180322 TCTATCTCTTTCATTGTCTTCAGCT 57.820 36.000 0.00 0.00 0.00 4.24
8812 9343 4.006780 TCATTGTCTTCAGCTGCAGTTA 57.993 40.909 16.64 1.08 0.00 2.24
8916 9447 4.026052 TGTCTTCCTGTCATGCTGATCTA 58.974 43.478 0.00 0.00 0.00 1.98
8923 9454 3.875727 CTGTCATGCTGATCTAAGGTTGG 59.124 47.826 0.00 0.00 0.00 3.77
8971 9502 3.111853 TGGATTGCTAATCTAGTGGCG 57.888 47.619 8.23 0.00 38.01 5.69
8992 9523 6.653320 TGGCGAGAAATTGACTTGTAAATACT 59.347 34.615 0.00 0.00 0.00 2.12
8993 9524 7.148474 TGGCGAGAAATTGACTTGTAAATACTC 60.148 37.037 0.00 0.00 0.00 2.59
8994 9525 7.180748 GCGAGAAATTGACTTGTAAATACTCC 58.819 38.462 0.00 0.00 0.00 3.85
8995 9526 7.676572 GCGAGAAATTGACTTGTAAATACTCCC 60.677 40.741 0.00 0.00 0.00 4.30
8996 9527 7.549488 CGAGAAATTGACTTGTAAATACTCCCT 59.451 37.037 0.00 0.00 0.00 4.20
8997 9528 8.794335 AGAAATTGACTTGTAAATACTCCCTC 57.206 34.615 0.00 0.00 0.00 4.30
8998 9529 7.829706 AGAAATTGACTTGTAAATACTCCCTCC 59.170 37.037 0.00 0.00 0.00 4.30
8999 9530 4.730949 TGACTTGTAAATACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
9000 9531 4.091549 TGACTTGTAAATACTCCCTCCGT 58.908 43.478 0.00 0.00 0.00 4.69
9001 9532 4.529377 TGACTTGTAAATACTCCCTCCGTT 59.471 41.667 0.00 0.00 0.00 4.44
9002 9533 5.082251 ACTTGTAAATACTCCCTCCGTTC 57.918 43.478 0.00 0.00 0.00 3.95
9003 9534 4.081254 ACTTGTAAATACTCCCTCCGTTCC 60.081 45.833 0.00 0.00 0.00 3.62
9004 9535 2.428171 TGTAAATACTCCCTCCGTTCCG 59.572 50.000 0.00 0.00 0.00 4.30
9005 9536 1.856629 AAATACTCCCTCCGTTCCGA 58.143 50.000 0.00 0.00 0.00 4.55
9006 9537 2.083628 AATACTCCCTCCGTTCCGAT 57.916 50.000 0.00 0.00 0.00 4.18
9007 9538 2.083628 ATACTCCCTCCGTTCCGATT 57.916 50.000 0.00 0.00 0.00 3.34
9008 9539 1.856629 TACTCCCTCCGTTCCGATTT 58.143 50.000 0.00 0.00 0.00 2.17
9009 9540 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
9010 9541 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
9011 9542 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
9012 9543 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
9014 9545 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
9015 9546 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
9016 9547 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
9017 9548 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
9018 9549 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
9019 9550 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
9020 9551 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
9021 9552 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
9022 9553 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
9023 9554 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
9024 9555 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
9025 9556 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
9026 9557 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
9027 9558 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
9028 9559 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
9029 9560 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
9030 9561 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
9031 9562 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
9032 9563 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
9033 9564 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
9034 9565 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
9035 9566 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
9036 9567 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
9037 9568 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
9050 9581 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
9051 9582 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
9052 9583 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
9053 9584 5.738118 ATTTGAACTAAAACCACGACGAA 57.262 34.783 0.00 0.00 0.00 3.85
9054 9585 5.738118 TTTGAACTAAAACCACGACGAAT 57.262 34.783 0.00 0.00 0.00 3.34
9055 9586 6.841443 TTTGAACTAAAACCACGACGAATA 57.159 33.333 0.00 0.00 0.00 1.75
9056 9587 6.841443 TTGAACTAAAACCACGACGAATAA 57.159 33.333 0.00 0.00 0.00 1.40
9057 9588 6.841443 TGAACTAAAACCACGACGAATAAA 57.159 33.333 0.00 0.00 0.00 1.40
9058 9589 7.424227 TGAACTAAAACCACGACGAATAAAT 57.576 32.000 0.00 0.00 0.00 1.40
9059 9590 7.512297 TGAACTAAAACCACGACGAATAAATC 58.488 34.615 0.00 0.00 0.00 2.17
9125 9669 1.538512 CATGTGAGCTGGTTGTGAAGG 59.461 52.381 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.527810 ACAGAACTGGTGACTTTTGAAAATTAA 58.472 29.630 6.76 0.00 34.19 1.40
214 216 3.541071 TGAATGCAAATGACACTGACG 57.459 42.857 0.00 0.00 0.00 4.35
264 269 6.093633 ACGGTGGTATCAAAAGAGCTAAAATC 59.906 38.462 0.00 0.00 0.00 2.17
357 364 3.181459 TGTCGTTCCCTGATGAAACTTGA 60.181 43.478 0.00 0.00 0.00 3.02
586 595 6.696411 TCATGAAAAAGGTGTTTGAAAGTGT 58.304 32.000 0.00 0.00 0.00 3.55
708 719 6.017440 CCTTTGACCTTTTGATCGTCAGTTTA 60.017 38.462 1.51 0.00 37.78 2.01
772 789 7.467403 CGCTGTTTTGCCCCTAATTTTTAAAAA 60.467 33.333 15.38 15.38 0.00 1.94
777 794 3.398406 CGCTGTTTTGCCCCTAATTTTT 58.602 40.909 0.00 0.00 0.00 1.94
798 815 3.633361 CCTTGTTGGGTCTCACTCC 57.367 57.895 0.00 0.00 0.00 3.85
808 825 6.484364 AATTAGATTTATGCCCCTTGTTGG 57.516 37.500 0.00 0.00 0.00 3.77
813 830 7.114849 TGGGATAATTAGATTTATGCCCCTT 57.885 36.000 10.88 0.00 44.88 3.95
1270 1302 7.090953 TCAAAACAAAACCGACTCTAACAAT 57.909 32.000 0.00 0.00 0.00 2.71
1278 1310 4.081917 ACACCAATCAAAACAAAACCGACT 60.082 37.500 0.00 0.00 0.00 4.18
1367 1399 6.075519 GCAAGACGTATACATCAGAAACGTAG 60.076 42.308 1.27 0.00 45.83 3.51
1451 1483 6.017357 GTGATTATCAGCTCAATGCATCAAGA 60.017 38.462 0.00 0.00 45.94 3.02
1465 1497 7.253422 AGTTAACAAAGCATGTGATTATCAGC 58.747 34.615 8.61 0.00 42.99 4.26
1506 1539 7.276658 CCAGAACTTGTACATAGATCTTCACAC 59.723 40.741 0.00 0.00 0.00 3.82
1643 1677 4.051237 CGACGATGTGATCACCATACATT 58.949 43.478 22.85 1.00 35.35 2.71
1658 1692 7.165427 TGATATTCTTTCATCAACGACGATG 57.835 36.000 0.00 0.00 43.50 3.84
1686 1720 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
1726 1760 4.095483 GCTTGATTCACCCACTTAGATGTG 59.905 45.833 0.00 0.00 37.66 3.21
1738 1772 3.149196 TCCTCTTTGTGCTTGATTCACC 58.851 45.455 0.00 0.00 33.71 4.02
1777 1811 7.251704 ACATCGAGATTTGTGTGGATATTTC 57.748 36.000 0.00 0.00 0.00 2.17
1783 1817 5.168569 GTCTTACATCGAGATTTGTGTGGA 58.831 41.667 0.00 0.00 0.00 4.02
1901 2020 5.891551 GCTGGGGACAAAAGGAAGATATTAA 59.108 40.000 0.00 0.00 42.06 1.40
1937 2056 3.406442 AGGAGCTTCCCTCATGTGA 57.594 52.632 0.00 0.00 42.62 3.58
1951 2070 5.301805 GTCCCTCTCTCTAGATTTTGAGGAG 59.698 48.000 21.77 12.02 42.48 3.69
2001 2120 2.389059 CATGTTCTCTATCACGCTCCG 58.611 52.381 0.00 0.00 0.00 4.63
2152 2298 2.626780 GCCACGGTGCTCCCTTTTC 61.627 63.158 1.68 0.00 0.00 2.29
2468 2614 0.099436 GCTCAAGCAAAGCATACCCG 59.901 55.000 0.00 0.00 41.59 5.28
2594 2741 7.007723 ACTGTGGTCTTTATTTGGATGGTTAA 58.992 34.615 0.00 0.00 0.00 2.01
2595 2742 6.548321 ACTGTGGTCTTTATTTGGATGGTTA 58.452 36.000 0.00 0.00 0.00 2.85
2621 2768 8.246180 ACATTAACAATTTTCTGTCATAGCCAG 58.754 33.333 0.00 0.00 0.00 4.85
2814 2961 9.202273 TGTATTAATTTTGGCATGTTCAACTTC 57.798 29.630 0.00 0.00 0.00 3.01
2921 3068 3.698040 CTGCTGGATTTGCTAGATTGGTT 59.302 43.478 0.00 0.00 0.00 3.67
2973 3120 0.682852 AGCCATTTTGCTGTGCATGT 59.317 45.000 0.00 0.00 40.90 3.21
3094 3400 5.243730 CCCAAACAAAGGTGACATAACATCT 59.756 40.000 0.00 0.00 32.11 2.90
3148 3454 9.473007 CATAGACTAGATGAGAGGATATTTGGA 57.527 37.037 0.00 0.00 0.00 3.53
3347 3653 2.135933 GACTCCACTCTCCAAAACGTG 58.864 52.381 0.00 0.00 0.00 4.49
3348 3654 1.070289 GGACTCCACTCTCCAAAACGT 59.930 52.381 0.00 0.00 0.00 3.99
3363 3669 7.428826 ACTTTGAAAGATGTCAATTTGGACTC 58.571 34.615 12.53 0.00 37.36 3.36
3486 3793 9.044150 ACAGATTTTACAAAATTCAACACCATG 57.956 29.630 1.69 0.00 38.64 3.66
3591 3898 9.410556 GCATTCTACTGTGATAACAAAACATTT 57.589 29.630 0.00 0.00 0.00 2.32
3679 3987 7.660617 CCAGATTTCATAGAATCAGTAGCACAT 59.339 37.037 1.07 0.00 38.27 3.21
4002 4311 4.036734 GCAGTTGACATCCAAACAGAAAGA 59.963 41.667 0.00 0.00 36.36 2.52
4084 4393 7.831193 AGAGAAACACAATAGAACCAGCATAAT 59.169 33.333 0.00 0.00 0.00 1.28
4156 4465 2.554636 CGCTTGCTGTTTCAGGGCA 61.555 57.895 0.00 0.00 31.21 5.36
4376 4689 5.907207 TGTACATAGTCATTCCAGAAGCTC 58.093 41.667 0.00 0.00 0.00 4.09
4532 4846 7.728580 TCGATTGCGAACCAAAAATATTTAC 57.271 32.000 0.01 0.00 44.78 2.01
4630 4944 4.381612 CCGTAGCTCAGTCAATTTCTGGTA 60.382 45.833 0.00 0.00 34.15 3.25
4751 5065 6.954487 ACCCTTTCGAAAATTTACAAGTCT 57.046 33.333 12.41 0.00 0.00 3.24
4752 5066 7.997107 AAACCCTTTCGAAAATTTACAAGTC 57.003 32.000 12.41 0.00 0.00 3.01
4753 5067 8.139350 CCTAAACCCTTTCGAAAATTTACAAGT 58.861 33.333 12.41 0.00 0.00 3.16
4754 5068 7.115805 GCCTAAACCCTTTCGAAAATTTACAAG 59.884 37.037 12.41 7.38 0.00 3.16
4755 5069 6.924612 GCCTAAACCCTTTCGAAAATTTACAA 59.075 34.615 12.41 0.00 0.00 2.41
4756 5070 6.265876 AGCCTAAACCCTTTCGAAAATTTACA 59.734 34.615 12.41 0.00 0.00 2.41
4757 5071 6.684686 AGCCTAAACCCTTTCGAAAATTTAC 58.315 36.000 12.41 6.72 0.00 2.01
4758 5072 6.904463 AGCCTAAACCCTTTCGAAAATTTA 57.096 33.333 12.41 14.34 0.00 1.40
4759 5073 5.801531 AGCCTAAACCCTTTCGAAAATTT 57.198 34.783 12.41 14.01 0.00 1.82
4760 5074 5.801531 AAGCCTAAACCCTTTCGAAAATT 57.198 34.783 12.41 7.44 0.00 1.82
4761 5075 6.008331 ACTAAGCCTAAACCCTTTCGAAAAT 58.992 36.000 12.41 0.00 0.00 1.82
4762 5076 5.379187 ACTAAGCCTAAACCCTTTCGAAAA 58.621 37.500 12.41 0.00 0.00 2.29
4763 5077 4.976864 ACTAAGCCTAAACCCTTTCGAAA 58.023 39.130 10.71 10.71 0.00 3.46
4764 5078 4.628963 ACTAAGCCTAAACCCTTTCGAA 57.371 40.909 0.00 0.00 0.00 3.71
4956 5270 0.107703 GGCGTCACTTCATCCATCCA 60.108 55.000 0.00 0.00 0.00 3.41
5569 5883 7.907389 AGAGTCACTCAGTTCCATATAAAACA 58.093 34.615 7.77 0.00 32.06 2.83
5644 5958 6.667414 TGCTTTCCTACCCAATATGAAAACAT 59.333 34.615 0.00 0.00 30.02 2.71
5975 6293 2.711547 GCATCCCAGTAATAAGAGGGGT 59.288 50.000 0.00 0.00 41.77 4.95
6138 6464 5.624738 GCACTATATTATGGAACGGAGGGAG 60.625 48.000 0.00 0.00 0.00 4.30
6139 6465 4.222145 GCACTATATTATGGAACGGAGGGA 59.778 45.833 0.00 0.00 0.00 4.20
6140 6466 4.504858 GCACTATATTATGGAACGGAGGG 58.495 47.826 0.00 0.00 0.00 4.30
6141 6467 4.223032 AGGCACTATATTATGGAACGGAGG 59.777 45.833 0.00 0.00 36.02 4.30
6142 6468 5.407407 AGGCACTATATTATGGAACGGAG 57.593 43.478 0.00 0.00 36.02 4.63
6158 6484 9.515226 TGACTTTTGTAAAAATCTATAGGCACT 57.485 29.630 0.00 0.00 46.37 4.40
6175 6501 8.716909 CCAAAGTTTGTAATGTTTGACTTTTGT 58.283 29.630 14.36 0.00 35.75 2.83
6176 6502 8.716909 ACCAAAGTTTGTAATGTTTGACTTTTG 58.283 29.630 14.36 0.00 35.75 2.44
6177 6503 8.840833 ACCAAAGTTTGTAATGTTTGACTTTT 57.159 26.923 14.36 0.00 35.75 2.27
6178 6504 8.091449 TGACCAAAGTTTGTAATGTTTGACTTT 58.909 29.630 14.36 0.00 37.70 2.66
6179 6505 7.607250 TGACCAAAGTTTGTAATGTTTGACTT 58.393 30.769 14.36 0.00 32.65 3.01
6180 6506 7.164230 TGACCAAAGTTTGTAATGTTTGACT 57.836 32.000 14.36 0.00 32.65 3.41
6181 6507 7.491048 ACATGACCAAAGTTTGTAATGTTTGAC 59.509 33.333 14.36 0.00 32.65 3.18
6182 6508 7.551585 ACATGACCAAAGTTTGTAATGTTTGA 58.448 30.769 14.36 0.00 32.65 2.69
6183 6509 7.769272 ACATGACCAAAGTTTGTAATGTTTG 57.231 32.000 14.36 9.02 0.00 2.93
6184 6510 8.785329 AAACATGACCAAAGTTTGTAATGTTT 57.215 26.923 27.30 27.30 39.05 2.83
6185 6511 8.257306 AGAAACATGACCAAAGTTTGTAATGTT 58.743 29.630 22.43 22.43 37.50 2.71
6186 6512 7.781056 AGAAACATGACCAAAGTTTGTAATGT 58.219 30.769 14.36 15.57 35.77 2.71
6187 6513 9.398170 CTAGAAACATGACCAAAGTTTGTAATG 57.602 33.333 14.36 15.03 35.77 1.90
6188 6514 9.349713 TCTAGAAACATGACCAAAGTTTGTAAT 57.650 29.630 14.36 2.52 35.77 1.89
6189 6515 8.740123 TCTAGAAACATGACCAAAGTTTGTAA 57.260 30.769 14.36 0.21 35.77 2.41
6190 6516 8.208224 TCTCTAGAAACATGACCAAAGTTTGTA 58.792 33.333 14.36 1.38 35.77 2.41
6191 6517 7.054124 TCTCTAGAAACATGACCAAAGTTTGT 58.946 34.615 14.36 2.94 35.77 2.83
6192 6518 7.496529 TCTCTAGAAACATGACCAAAGTTTG 57.503 36.000 8.73 8.73 35.77 2.93
6193 6519 8.519799 TTTCTCTAGAAACATGACCAAAGTTT 57.480 30.769 0.00 0.00 38.94 2.66
6194 6520 8.519799 TTTTCTCTAGAAACATGACCAAAGTT 57.480 30.769 0.00 0.00 43.01 2.66
6195 6521 7.775561 ACTTTTCTCTAGAAACATGACCAAAGT 59.224 33.333 0.00 0.00 43.01 2.66
6196 6522 8.159344 ACTTTTCTCTAGAAACATGACCAAAG 57.841 34.615 0.00 0.00 43.01 2.77
6197 6523 9.273016 CTACTTTTCTCTAGAAACATGACCAAA 57.727 33.333 0.00 0.00 43.01 3.28
6198 6524 7.878127 CCTACTTTTCTCTAGAAACATGACCAA 59.122 37.037 0.00 0.00 43.01 3.67
6199 6525 7.016268 ACCTACTTTTCTCTAGAAACATGACCA 59.984 37.037 0.00 0.00 43.01 4.02
6200 6526 7.387643 ACCTACTTTTCTCTAGAAACATGACC 58.612 38.462 0.00 0.00 43.01 4.02
6201 6527 9.356433 GTACCTACTTTTCTCTAGAAACATGAC 57.644 37.037 0.00 0.00 43.01 3.06
6202 6528 9.085645 TGTACCTACTTTTCTCTAGAAACATGA 57.914 33.333 0.00 0.00 43.01 3.07
6203 6529 9.877178 ATGTACCTACTTTTCTCTAGAAACATG 57.123 33.333 4.66 0.00 43.01 3.21
6205 6531 9.310449 AGATGTACCTACTTTTCTCTAGAAACA 57.690 33.333 4.66 0.00 43.01 2.83
6214 6540 9.710818 TGGTATTCTAGATGTACCTACTTTTCT 57.289 33.333 24.31 0.00 38.89 2.52
6219 6545 8.368668 GCATTTGGTATTCTAGATGTACCTACT 58.631 37.037 24.31 14.71 38.89 2.57
6220 6546 8.148351 TGCATTTGGTATTCTAGATGTACCTAC 58.852 37.037 24.31 14.77 38.89 3.18
6221 6547 8.148351 GTGCATTTGGTATTCTAGATGTACCTA 58.852 37.037 24.31 18.45 38.89 3.08
6222 6548 6.992715 GTGCATTTGGTATTCTAGATGTACCT 59.007 38.462 24.31 10.63 38.89 3.08
6223 6549 6.765989 TGTGCATTTGGTATTCTAGATGTACC 59.234 38.462 20.29 20.29 38.65 3.34
6224 6550 7.786178 TGTGCATTTGGTATTCTAGATGTAC 57.214 36.000 0.00 0.27 32.91 2.90
6225 6551 8.210265 TGATGTGCATTTGGTATTCTAGATGTA 58.790 33.333 0.00 0.00 0.00 2.29
6226 6552 7.056006 TGATGTGCATTTGGTATTCTAGATGT 58.944 34.615 0.00 0.00 0.00 3.06
6227 6553 7.500720 TGATGTGCATTTGGTATTCTAGATG 57.499 36.000 0.00 0.00 0.00 2.90
6228 6554 8.573885 CAATGATGTGCATTTGGTATTCTAGAT 58.426 33.333 0.00 0.00 44.68 1.98
6229 6555 7.013559 CCAATGATGTGCATTTGGTATTCTAGA 59.986 37.037 0.00 0.00 44.68 2.43
6230 6556 7.013559 TCCAATGATGTGCATTTGGTATTCTAG 59.986 37.037 12.63 0.00 44.68 2.43
6231 6557 6.832900 TCCAATGATGTGCATTTGGTATTCTA 59.167 34.615 12.63 0.00 44.68 2.10
6232 6558 5.657745 TCCAATGATGTGCATTTGGTATTCT 59.342 36.000 12.63 0.00 44.68 2.40
6233 6559 5.904941 TCCAATGATGTGCATTTGGTATTC 58.095 37.500 12.63 0.00 44.68 1.75
6234 6560 5.936187 TCCAATGATGTGCATTTGGTATT 57.064 34.783 12.63 0.00 44.68 1.89
6235 6561 6.550481 TGTATCCAATGATGTGCATTTGGTAT 59.450 34.615 12.63 9.03 44.68 2.73
6236 6562 5.890419 TGTATCCAATGATGTGCATTTGGTA 59.110 36.000 12.63 5.40 44.68 3.25
6237 6563 4.710865 TGTATCCAATGATGTGCATTTGGT 59.289 37.500 12.63 6.06 44.68 3.67
6238 6564 5.265350 TGTATCCAATGATGTGCATTTGG 57.735 39.130 8.57 8.57 44.68 3.28
6239 6565 5.627780 CGATGTATCCAATGATGTGCATTTG 59.372 40.000 0.00 0.00 44.68 2.32
6240 6566 5.300034 ACGATGTATCCAATGATGTGCATTT 59.700 36.000 0.00 0.00 44.68 2.32
6242 6568 4.214758 CACGATGTATCCAATGATGTGCAT 59.785 41.667 0.00 0.00 39.43 3.96
6243 6569 3.560896 CACGATGTATCCAATGATGTGCA 59.439 43.478 0.00 0.00 32.18 4.57
6244 6570 3.809279 TCACGATGTATCCAATGATGTGC 59.191 43.478 0.00 0.00 32.18 4.57
6245 6571 5.052481 ACTCACGATGTATCCAATGATGTG 58.948 41.667 0.00 0.00 32.18 3.21
6246 6572 5.282055 ACTCACGATGTATCCAATGATGT 57.718 39.130 0.00 0.00 32.18 3.06
6247 6573 7.895975 ATAACTCACGATGTATCCAATGATG 57.104 36.000 0.00 0.00 32.18 3.07
6249 6575 9.996554 AAATATAACTCACGATGTATCCAATGA 57.003 29.630 0.00 0.00 0.00 2.57
6252 6578 9.825109 TGAAAATATAACTCACGATGTATCCAA 57.175 29.630 0.00 0.00 0.00 3.53
6253 6579 9.476202 CTGAAAATATAACTCACGATGTATCCA 57.524 33.333 0.00 0.00 0.00 3.41
6254 6580 9.692749 TCTGAAAATATAACTCACGATGTATCC 57.307 33.333 0.00 0.00 0.00 2.59
6258 6584 9.383519 ACATTCTGAAAATATAACTCACGATGT 57.616 29.630 0.00 0.00 0.00 3.06
6261 6587 9.863845 TGTACATTCTGAAAATATAACTCACGA 57.136 29.630 0.00 0.00 0.00 4.35
6273 6599 9.689976 CAATACCAAACATGTACATTCTGAAAA 57.310 29.630 5.37 0.00 0.00 2.29
6274 6600 8.855110 ACAATACCAAACATGTACATTCTGAAA 58.145 29.630 5.37 0.00 0.00 2.69
6275 6601 8.402798 ACAATACCAAACATGTACATTCTGAA 57.597 30.769 5.37 0.00 0.00 3.02
6276 6602 7.994425 ACAATACCAAACATGTACATTCTGA 57.006 32.000 5.37 0.00 0.00 3.27
6277 6603 9.161629 TCTACAATACCAAACATGTACATTCTG 57.838 33.333 5.37 0.00 0.00 3.02
6278 6604 9.905713 ATCTACAATACCAAACATGTACATTCT 57.094 29.630 5.37 0.00 0.00 2.40
6314 6640 6.827586 ACTTTGACCAAGTGTACAGAAAAA 57.172 33.333 0.00 0.00 44.70 1.94
6315 6641 6.349777 CCAACTTTGACCAAGTGTACAGAAAA 60.350 38.462 0.00 0.00 45.77 2.29
6316 6642 5.124776 CCAACTTTGACCAAGTGTACAGAAA 59.875 40.000 0.00 0.00 45.77 2.52
6317 6643 4.638421 CCAACTTTGACCAAGTGTACAGAA 59.362 41.667 0.00 0.00 45.77 3.02
6318 6644 4.196193 CCAACTTTGACCAAGTGTACAGA 58.804 43.478 0.00 0.00 45.77 3.41
6319 6645 3.243068 GCCAACTTTGACCAAGTGTACAG 60.243 47.826 0.00 0.00 45.77 2.74
6320 6646 2.685897 GCCAACTTTGACCAAGTGTACA 59.314 45.455 0.00 0.00 45.77 2.90
6321 6647 2.685897 TGCCAACTTTGACCAAGTGTAC 59.314 45.455 0.00 0.00 45.77 2.90
6322 6648 3.006112 TGCCAACTTTGACCAAGTGTA 57.994 42.857 0.00 0.00 45.77 2.90
6323 6649 1.846007 TGCCAACTTTGACCAAGTGT 58.154 45.000 0.00 0.00 45.77 3.55
6324 6650 2.957491 TTGCCAACTTTGACCAAGTG 57.043 45.000 0.00 0.00 45.77 3.16
6326 6652 3.525268 ACTTTGCCAACTTTGACCAAG 57.475 42.857 0.00 0.00 38.64 3.61
6327 6653 3.971245 AACTTTGCCAACTTTGACCAA 57.029 38.095 0.00 0.00 0.00 3.67
6328 6654 3.259374 TCAAACTTTGCCAACTTTGACCA 59.741 39.130 5.68 0.00 29.66 4.02
6329 6655 3.616821 GTCAAACTTTGCCAACTTTGACC 59.383 43.478 19.93 9.30 43.35 4.02
6330 6656 4.494484 AGTCAAACTTTGCCAACTTTGAC 58.506 39.130 21.64 21.64 46.84 3.18
6331 6657 4.799564 AGTCAAACTTTGCCAACTTTGA 57.200 36.364 5.68 5.68 31.68 2.69
6332 6658 5.861222 AAAGTCAAACTTTGCCAACTTTG 57.139 34.783 14.50 1.84 45.83 2.77
6358 6684 8.052748 TCCACAATGTAGTGCCTATAGATTTTT 58.947 33.333 0.00 0.00 38.18 1.94
6359 6685 7.573710 TCCACAATGTAGTGCCTATAGATTTT 58.426 34.615 0.00 0.00 38.18 1.82
6360 6686 7.136822 TCCACAATGTAGTGCCTATAGATTT 57.863 36.000 0.00 0.00 38.18 2.17
6361 6687 6.747414 TCCACAATGTAGTGCCTATAGATT 57.253 37.500 0.00 0.00 38.18 2.40
6362 6688 6.747414 TTCCACAATGTAGTGCCTATAGAT 57.253 37.500 0.00 0.00 38.18 1.98
6363 6689 6.464322 CCATTCCACAATGTAGTGCCTATAGA 60.464 42.308 0.00 0.00 38.22 1.98
6364 6690 5.702670 CCATTCCACAATGTAGTGCCTATAG 59.297 44.000 0.00 0.00 38.22 1.31
6365 6691 5.368230 TCCATTCCACAATGTAGTGCCTATA 59.632 40.000 0.00 0.00 38.22 1.31
6366 6692 4.165950 TCCATTCCACAATGTAGTGCCTAT 59.834 41.667 0.00 0.00 38.22 2.57
6367 6693 3.521531 TCCATTCCACAATGTAGTGCCTA 59.478 43.478 0.00 0.00 38.22 3.93
6368 6694 2.308570 TCCATTCCACAATGTAGTGCCT 59.691 45.455 0.00 0.00 38.22 4.75
6369 6695 2.684881 CTCCATTCCACAATGTAGTGCC 59.315 50.000 0.00 0.00 38.22 5.01
6370 6696 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
6371 6697 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
6372 6698 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
6373 6699 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
6374 6700 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
6375 6701 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
6376 6702 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
6377 6703 5.044179 TCAAATACTCCCTCCATTCCACAAT 60.044 40.000 0.00 0.00 0.00 2.71
6378 6704 4.290985 TCAAATACTCCCTCCATTCCACAA 59.709 41.667 0.00 0.00 0.00 3.33
6379 6705 3.849574 TCAAATACTCCCTCCATTCCACA 59.150 43.478 0.00 0.00 0.00 4.17
6380 6706 4.503714 TCAAATACTCCCTCCATTCCAC 57.496 45.455 0.00 0.00 0.00 4.02
6381 6707 6.332635 ACATATCAAATACTCCCTCCATTCCA 59.667 38.462 0.00 0.00 0.00 3.53
6382 6708 6.784031 ACATATCAAATACTCCCTCCATTCC 58.216 40.000 0.00 0.00 0.00 3.01
6383 6709 8.697507 AAACATATCAAATACTCCCTCCATTC 57.302 34.615 0.00 0.00 0.00 2.67
6384 6710 8.506083 AGAAACATATCAAATACTCCCTCCATT 58.494 33.333 0.00 0.00 0.00 3.16
6385 6711 8.050316 AGAAACATATCAAATACTCCCTCCAT 57.950 34.615 0.00 0.00 0.00 3.41
6386 6712 7.451731 AGAAACATATCAAATACTCCCTCCA 57.548 36.000 0.00 0.00 0.00 3.86
6387 6713 8.652290 AGTAGAAACATATCAAATACTCCCTCC 58.348 37.037 0.00 0.00 0.00 4.30
6388 6714 9.699703 GAGTAGAAACATATCAAATACTCCCTC 57.300 37.037 0.00 0.00 34.32 4.30
6389 6715 9.213777 TGAGTAGAAACATATCAAATACTCCCT 57.786 33.333 6.92 0.00 37.78 4.20
6903 7236 4.137543 AGTCTGTTGGCCTTCTAACTTTG 58.862 43.478 3.32 0.00 0.00 2.77
7379 7728 7.712204 TTTGGAAGGGAAATATAAACTCACC 57.288 36.000 0.00 0.00 0.00 4.02
7410 7763 3.531538 AGTTTCTGTCAGAAAGCAACGA 58.468 40.909 25.06 2.76 44.07 3.85
7653 8025 8.401709 ACAAAAAGACAACACACAAAACAAATT 58.598 25.926 0.00 0.00 0.00 1.82
7654 8026 7.854916 CACAAAAAGACAACACACAAAACAAAT 59.145 29.630 0.00 0.00 0.00 2.32
8112 8499 4.202141 CCATCAGCAAACTTGTTTTCAGGA 60.202 41.667 0.00 0.00 0.00 3.86
8172 8559 3.131577 AGCAAAAGCATGATATGGGTGTG 59.868 43.478 0.00 0.00 0.00 3.82
8188 8575 9.612066 AGGATTCAATTTGAAAACTAAGCAAAA 57.388 25.926 15.34 0.00 40.12 2.44
8348 8832 7.050377 AGTCATTATATATCCTTTCCCGCATG 58.950 38.462 0.00 0.00 0.00 4.06
8374 8858 7.950684 AGTGACCAGAGGAAGTAGCATAATATA 59.049 37.037 0.00 0.00 0.00 0.86
8386 8870 5.467063 GTCTTACAAAAGTGACCAGAGGAAG 59.533 44.000 0.00 0.00 34.13 3.46
8387 8871 5.365619 GTCTTACAAAAGTGACCAGAGGAA 58.634 41.667 0.00 0.00 34.13 3.36
8388 8872 4.202326 GGTCTTACAAAAGTGACCAGAGGA 60.202 45.833 6.18 0.00 45.87 3.71
8389 8873 4.065789 GGTCTTACAAAAGTGACCAGAGG 58.934 47.826 6.18 0.00 45.87 3.69
8394 8878 7.281549 TGTCTAAAAGGTCTTACAAAAGTGACC 59.718 37.037 0.00 0.00 46.67 4.02
8395 8879 8.205131 TGTCTAAAAGGTCTTACAAAAGTGAC 57.795 34.615 0.00 0.00 34.13 3.67
8396 8880 8.974060 ATGTCTAAAAGGTCTTACAAAAGTGA 57.026 30.769 0.00 0.00 34.13 3.41
8406 8890 9.403583 TGTTGTCTTAAATGTCTAAAAGGTCTT 57.596 29.630 0.00 0.00 0.00 3.01
8407 8891 8.837389 GTGTTGTCTTAAATGTCTAAAAGGTCT 58.163 33.333 0.00 0.00 0.00 3.85
8408 8892 8.074370 GGTGTTGTCTTAAATGTCTAAAAGGTC 58.926 37.037 0.00 0.00 0.00 3.85
8409 8893 7.778382 AGGTGTTGTCTTAAATGTCTAAAAGGT 59.222 33.333 0.00 0.00 0.00 3.50
8410 8894 8.166422 AGGTGTTGTCTTAAATGTCTAAAAGG 57.834 34.615 0.00 0.00 0.00 3.11
8414 8898 8.780249 GCTTTAGGTGTTGTCTTAAATGTCTAA 58.220 33.333 0.00 0.00 0.00 2.10
8415 8899 7.934665 TGCTTTAGGTGTTGTCTTAAATGTCTA 59.065 33.333 0.00 0.00 0.00 2.59
8416 8900 6.770785 TGCTTTAGGTGTTGTCTTAAATGTCT 59.229 34.615 0.00 0.00 0.00 3.41
8417 8901 6.966021 TGCTTTAGGTGTTGTCTTAAATGTC 58.034 36.000 0.00 0.00 0.00 3.06
8418 8902 6.546034 ACTGCTTTAGGTGTTGTCTTAAATGT 59.454 34.615 0.00 0.00 0.00 2.71
8419 8903 6.970484 ACTGCTTTAGGTGTTGTCTTAAATG 58.030 36.000 0.00 0.00 0.00 2.32
8420 8904 7.284489 TGAACTGCTTTAGGTGTTGTCTTAAAT 59.716 33.333 0.00 0.00 0.00 1.40
8421 8905 6.600032 TGAACTGCTTTAGGTGTTGTCTTAAA 59.400 34.615 0.00 0.00 0.00 1.52
8422 8906 6.116806 TGAACTGCTTTAGGTGTTGTCTTAA 58.883 36.000 0.00 0.00 0.00 1.85
8423 8907 5.676552 TGAACTGCTTTAGGTGTTGTCTTA 58.323 37.500 0.00 0.00 0.00 2.10
8424 8908 4.523083 TGAACTGCTTTAGGTGTTGTCTT 58.477 39.130 0.00 0.00 0.00 3.01
8425 8909 4.150897 TGAACTGCTTTAGGTGTTGTCT 57.849 40.909 0.00 0.00 0.00 3.41
8426 8910 4.893424 TTGAACTGCTTTAGGTGTTGTC 57.107 40.909 0.00 0.00 0.00 3.18
8427 8911 5.852282 AATTGAACTGCTTTAGGTGTTGT 57.148 34.783 0.00 0.00 0.00 3.32
8428 8912 6.272318 TGAAATTGAACTGCTTTAGGTGTTG 58.728 36.000 0.00 0.00 0.00 3.33
8429 8913 6.463995 TGAAATTGAACTGCTTTAGGTGTT 57.536 33.333 0.00 0.00 0.00 3.32
8430 8914 5.507985 GCTGAAATTGAACTGCTTTAGGTGT 60.508 40.000 0.00 0.00 0.00 4.16
8431 8915 4.919754 GCTGAAATTGAACTGCTTTAGGTG 59.080 41.667 0.00 0.00 0.00 4.00
8432 8916 4.829492 AGCTGAAATTGAACTGCTTTAGGT 59.171 37.500 0.00 0.00 37.89 3.08
8433 8917 5.159209 CAGCTGAAATTGAACTGCTTTAGG 58.841 41.667 8.42 0.00 38.76 2.69
8434 8918 5.766222 ACAGCTGAAATTGAACTGCTTTAG 58.234 37.500 23.35 0.00 38.76 1.85
8435 8919 5.532406 AGACAGCTGAAATTGAACTGCTTTA 59.468 36.000 23.35 0.00 38.76 1.85
8436 8920 4.340381 AGACAGCTGAAATTGAACTGCTTT 59.660 37.500 23.35 0.00 38.76 3.51
8437 8921 3.887716 AGACAGCTGAAATTGAACTGCTT 59.112 39.130 23.35 0.00 38.76 3.91
8438 8922 3.484407 AGACAGCTGAAATTGAACTGCT 58.516 40.909 23.35 0.00 40.75 4.24
8439 8923 3.911661 AGACAGCTGAAATTGAACTGC 57.088 42.857 23.35 0.00 31.46 4.40
8440 8924 7.148853 GCATTTAAGACAGCTGAAATTGAACTG 60.149 37.037 23.35 11.21 33.69 3.16
8441 8925 6.865205 GCATTTAAGACAGCTGAAATTGAACT 59.135 34.615 23.35 0.00 33.69 3.01
8442 8926 6.089954 GGCATTTAAGACAGCTGAAATTGAAC 59.910 38.462 23.35 5.21 33.69 3.18
8443 8927 6.158598 GGCATTTAAGACAGCTGAAATTGAA 58.841 36.000 23.35 14.11 33.69 2.69
8444 8928 5.243507 TGGCATTTAAGACAGCTGAAATTGA 59.756 36.000 23.35 5.74 33.69 2.57
8445 8929 5.472148 TGGCATTTAAGACAGCTGAAATTG 58.528 37.500 23.35 14.67 33.69 2.32
8446 8930 5.726980 TGGCATTTAAGACAGCTGAAATT 57.273 34.783 23.35 13.76 33.69 1.82
8447 8931 5.927281 ATGGCATTTAAGACAGCTGAAAT 57.073 34.783 23.35 12.84 35.90 2.17
8448 8932 5.709631 TGTATGGCATTTAAGACAGCTGAAA 59.290 36.000 23.35 10.88 0.00 2.69
8449 8933 5.252547 TGTATGGCATTTAAGACAGCTGAA 58.747 37.500 23.35 3.60 0.00 3.02
8450 8934 4.842574 TGTATGGCATTTAAGACAGCTGA 58.157 39.130 23.35 0.00 0.00 4.26
8451 8935 5.565592 TTGTATGGCATTTAAGACAGCTG 57.434 39.130 13.48 13.48 0.00 4.24
8452 8936 6.209391 ACTTTTGTATGGCATTTAAGACAGCT 59.791 34.615 4.78 0.00 0.00 4.24
8453 8937 6.308766 CACTTTTGTATGGCATTTAAGACAGC 59.691 38.462 4.78 0.00 0.00 4.40
8454 8938 7.592938 TCACTTTTGTATGGCATTTAAGACAG 58.407 34.615 4.78 2.38 0.00 3.51
8455 8939 7.517614 TCACTTTTGTATGGCATTTAAGACA 57.482 32.000 4.78 0.00 0.00 3.41
8456 8940 7.865385 TGTTCACTTTTGTATGGCATTTAAGAC 59.135 33.333 4.78 0.00 0.00 3.01
8457 8941 7.946207 TGTTCACTTTTGTATGGCATTTAAGA 58.054 30.769 4.78 0.00 0.00 2.10
8458 8942 8.081633 TCTGTTCACTTTTGTATGGCATTTAAG 58.918 33.333 4.78 7.11 0.00 1.85
8459 8943 7.946207 TCTGTTCACTTTTGTATGGCATTTAA 58.054 30.769 4.78 0.00 0.00 1.52
8460 8944 7.309133 CCTCTGTTCACTTTTGTATGGCATTTA 60.309 37.037 4.78 0.00 0.00 1.40
8461 8945 6.403866 TCTGTTCACTTTTGTATGGCATTT 57.596 33.333 4.78 0.00 0.00 2.32
8462 8946 5.047802 CCTCTGTTCACTTTTGTATGGCATT 60.048 40.000 4.78 0.00 0.00 3.56
8463 8947 4.460382 CCTCTGTTCACTTTTGTATGGCAT 59.540 41.667 4.88 4.88 0.00 4.40
8464 8948 3.820467 CCTCTGTTCACTTTTGTATGGCA 59.180 43.478 0.00 0.00 0.00 4.92
8465 8949 3.191371 CCCTCTGTTCACTTTTGTATGGC 59.809 47.826 0.00 0.00 0.00 4.40
8466 8950 4.651778 TCCCTCTGTTCACTTTTGTATGG 58.348 43.478 0.00 0.00 0.00 2.74
8467 8951 4.154918 GCTCCCTCTGTTCACTTTTGTATG 59.845 45.833 0.00 0.00 0.00 2.39
8468 8952 4.202461 TGCTCCCTCTGTTCACTTTTGTAT 60.202 41.667 0.00 0.00 0.00 2.29
8469 8953 3.135712 TGCTCCCTCTGTTCACTTTTGTA 59.864 43.478 0.00 0.00 0.00 2.41
8470 8954 2.092429 TGCTCCCTCTGTTCACTTTTGT 60.092 45.455 0.00 0.00 0.00 2.83
8471 8955 2.575532 TGCTCCCTCTGTTCACTTTTG 58.424 47.619 0.00 0.00 0.00 2.44
8472 8956 3.515602 ATGCTCCCTCTGTTCACTTTT 57.484 42.857 0.00 0.00 0.00 2.27
8473 8957 3.515602 AATGCTCCCTCTGTTCACTTT 57.484 42.857 0.00 0.00 0.00 2.66
8474 8958 4.640771 TTAATGCTCCCTCTGTTCACTT 57.359 40.909 0.00 0.00 0.00 3.16
8475 8959 4.566488 CCTTTAATGCTCCCTCTGTTCACT 60.566 45.833 0.00 0.00 0.00 3.41
8476 8960 3.691609 CCTTTAATGCTCCCTCTGTTCAC 59.308 47.826 0.00 0.00 0.00 3.18
8477 8961 3.587061 TCCTTTAATGCTCCCTCTGTTCA 59.413 43.478 0.00 0.00 0.00 3.18
8478 8962 4.222124 TCCTTTAATGCTCCCTCTGTTC 57.778 45.455 0.00 0.00 0.00 3.18
8479 8963 4.870021 ATCCTTTAATGCTCCCTCTGTT 57.130 40.909 0.00 0.00 0.00 3.16
8480 8964 4.018050 ACAATCCTTTAATGCTCCCTCTGT 60.018 41.667 0.00 0.00 0.00 3.41
8481 8965 4.530875 ACAATCCTTTAATGCTCCCTCTG 58.469 43.478 0.00 0.00 0.00 3.35
8482 8966 4.870021 ACAATCCTTTAATGCTCCCTCT 57.130 40.909 0.00 0.00 0.00 3.69
8483 8967 5.009110 GCTTACAATCCTTTAATGCTCCCTC 59.991 44.000 0.00 0.00 0.00 4.30
8484 8968 4.889995 GCTTACAATCCTTTAATGCTCCCT 59.110 41.667 0.00 0.00 0.00 4.20
8485 8969 4.644685 TGCTTACAATCCTTTAATGCTCCC 59.355 41.667 0.00 0.00 0.00 4.30
8486 8970 5.835113 TGCTTACAATCCTTTAATGCTCC 57.165 39.130 0.00 0.00 0.00 4.70
8487 8971 6.799512 ACATGCTTACAATCCTTTAATGCTC 58.200 36.000 0.00 0.00 0.00 4.26
8488 8972 6.780457 ACATGCTTACAATCCTTTAATGCT 57.220 33.333 0.00 0.00 0.00 3.79
8489 8973 7.832503 AAACATGCTTACAATCCTTTAATGC 57.167 32.000 0.00 0.00 0.00 3.56
8491 8975 9.139174 CGAAAAACATGCTTACAATCCTTTAAT 57.861 29.630 0.00 0.00 0.00 1.40
8492 8976 7.596995 CCGAAAAACATGCTTACAATCCTTTAA 59.403 33.333 0.00 0.00 0.00 1.52
8493 8977 7.087639 CCGAAAAACATGCTTACAATCCTTTA 58.912 34.615 0.00 0.00 0.00 1.85
8494 8978 5.925969 CCGAAAAACATGCTTACAATCCTTT 59.074 36.000 0.00 0.00 0.00 3.11
8495 8979 5.469479 CCGAAAAACATGCTTACAATCCTT 58.531 37.500 0.00 0.00 0.00 3.36
8496 8980 4.618227 GCCGAAAAACATGCTTACAATCCT 60.618 41.667 0.00 0.00 0.00 3.24
8497 8981 3.612423 GCCGAAAAACATGCTTACAATCC 59.388 43.478 0.00 0.00 0.00 3.01
8498 8982 3.300590 CGCCGAAAAACATGCTTACAATC 59.699 43.478 0.00 0.00 0.00 2.67
8499 8983 3.241701 CGCCGAAAAACATGCTTACAAT 58.758 40.909 0.00 0.00 0.00 2.71
8500 8984 2.656085 CGCCGAAAAACATGCTTACAA 58.344 42.857 0.00 0.00 0.00 2.41
8501 8985 1.664588 GCGCCGAAAAACATGCTTACA 60.665 47.619 0.00 0.00 0.00 2.41
8502 8986 0.981956 GCGCCGAAAAACATGCTTAC 59.018 50.000 0.00 0.00 0.00 2.34
8503 8987 0.878416 AGCGCCGAAAAACATGCTTA 59.122 45.000 2.29 0.00 0.00 3.09
8504 8988 0.664166 CAGCGCCGAAAAACATGCTT 60.664 50.000 2.29 0.00 0.00 3.91
8505 8989 1.081242 CAGCGCCGAAAAACATGCT 60.081 52.632 2.29 0.00 0.00 3.79
8506 8990 2.719774 GCAGCGCCGAAAAACATGC 61.720 57.895 2.29 0.00 0.00 4.06
8507 8991 0.167908 TAGCAGCGCCGAAAAACATG 59.832 50.000 2.29 0.00 0.00 3.21
8508 8992 1.094785 ATAGCAGCGCCGAAAAACAT 58.905 45.000 2.29 0.00 0.00 2.71
8509 8993 1.395608 GTATAGCAGCGCCGAAAAACA 59.604 47.619 2.29 0.00 0.00 2.83
8510 8994 1.591394 CGTATAGCAGCGCCGAAAAAC 60.591 52.381 2.29 0.00 0.00 2.43
8511 8995 0.648441 CGTATAGCAGCGCCGAAAAA 59.352 50.000 2.29 0.00 0.00 1.94
8559 9043 0.536724 AGCACTGCCACGTATGATCA 59.463 50.000 0.00 0.00 0.00 2.92
8622 9116 1.657751 GGTCTTGGGCTGCGGATTTC 61.658 60.000 0.00 0.00 0.00 2.17
8629 9123 2.991540 GGGTTGGTCTTGGGCTGC 60.992 66.667 0.00 0.00 0.00 5.25
8656 9150 1.205893 GTGGACGAGAAGAGATGGCTT 59.794 52.381 0.00 0.00 0.00 4.35
8753 9284 3.358111 TGTTTGTTGGAGTTGTGGAGA 57.642 42.857 0.00 0.00 0.00 3.71
8758 9289 1.336755 GGCGATGTTTGTTGGAGTTGT 59.663 47.619 0.00 0.00 0.00 3.32
8763 9294 2.582052 AGAAAGGCGATGTTTGTTGGA 58.418 42.857 0.00 0.00 0.00 3.53
8795 9326 3.076621 CCAATAACTGCAGCTGAAGACA 58.923 45.455 29.21 15.05 0.00 3.41
8805 9336 0.883153 CTGCTGCACCAATAACTGCA 59.117 50.000 0.00 0.00 41.13 4.41
8812 9343 3.058160 GCGGACTGCTGCACCAAT 61.058 61.111 9.60 0.00 45.91 3.16
8916 9447 2.040178 ACGACAACTCTCTCCAACCTT 58.960 47.619 0.00 0.00 0.00 3.50
8923 9454 4.083003 ACAGAAGATCACGACAACTCTCTC 60.083 45.833 0.00 0.00 0.00 3.20
8971 9502 8.794335 AGGGAGTATTTACAAGTCAATTTCTC 57.206 34.615 0.00 0.00 0.00 2.87
9004 9535 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
9005 9536 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
9006 9537 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
9007 9538 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
9008 9539 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
9009 9540 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
9010 9541 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
9011 9542 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
9012 9543 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
9013 9544 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
9026 9557 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
9027 9558 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
9028 9559 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
9029 9560 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
9030 9561 5.738118 TCGTCGTGGTTTTAGTTCAAATT 57.262 34.783 0.00 0.00 0.00 1.82
9031 9562 5.738118 TTCGTCGTGGTTTTAGTTCAAAT 57.262 34.783 0.00 0.00 0.00 2.32
9032 9563 5.738118 ATTCGTCGTGGTTTTAGTTCAAA 57.262 34.783 0.00 0.00 0.00 2.69
9033 9564 6.841443 TTATTCGTCGTGGTTTTAGTTCAA 57.159 33.333 0.00 0.00 0.00 2.69
9034 9565 6.841443 TTTATTCGTCGTGGTTTTAGTTCA 57.159 33.333 0.00 0.00 0.00 3.18
9035 9566 6.675747 CGATTTATTCGTCGTGGTTTTAGTTC 59.324 38.462 0.00 0.00 43.01 3.01
9036 9567 6.401367 CCGATTTATTCGTCGTGGTTTTAGTT 60.401 38.462 0.00 0.00 46.65 2.24
9037 9568 5.062558 CCGATTTATTCGTCGTGGTTTTAGT 59.937 40.000 0.00 0.00 46.65 2.24
9038 9569 5.289193 TCCGATTTATTCGTCGTGGTTTTAG 59.711 40.000 0.00 0.00 46.65 1.85
9039 9570 5.167121 TCCGATTTATTCGTCGTGGTTTTA 58.833 37.500 0.00 0.00 46.65 1.52
9040 9571 3.995705 TCCGATTTATTCGTCGTGGTTTT 59.004 39.130 0.00 0.00 46.65 2.43
9041 9572 3.587923 TCCGATTTATTCGTCGTGGTTT 58.412 40.909 0.00 0.00 46.65 3.27
9042 9573 3.235157 TCCGATTTATTCGTCGTGGTT 57.765 42.857 0.00 0.00 46.65 3.67
9043 9574 2.925563 GTTCCGATTTATTCGTCGTGGT 59.074 45.455 0.00 0.00 46.65 4.16
9044 9575 2.035176 CGTTCCGATTTATTCGTCGTGG 60.035 50.000 0.00 0.00 46.65 4.94
9045 9576 2.035176 CCGTTCCGATTTATTCGTCGTG 60.035 50.000 0.00 0.00 46.65 4.35
9046 9577 2.159393 TCCGTTCCGATTTATTCGTCGT 60.159 45.455 0.00 0.00 46.65 4.34
9047 9578 2.453080 TCCGTTCCGATTTATTCGTCG 58.547 47.619 0.00 0.00 46.65 5.12
9048 9579 2.793232 CCTCCGTTCCGATTTATTCGTC 59.207 50.000 0.00 0.00 46.65 4.20
9049 9580 2.482490 CCCTCCGTTCCGATTTATTCGT 60.482 50.000 0.00 0.00 46.65 3.85
9051 9582 3.181468 ACTCCCTCCGTTCCGATTTATTC 60.181 47.826 0.00 0.00 0.00 1.75
9052 9583 2.770232 ACTCCCTCCGTTCCGATTTATT 59.230 45.455 0.00 0.00 0.00 1.40
9053 9584 2.395619 ACTCCCTCCGTTCCGATTTAT 58.604 47.619 0.00 0.00 0.00 1.40
9054 9585 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
9055 9586 1.479730 GTACTCCCTCCGTTCCGATTT 59.520 52.381 0.00 0.00 0.00 2.17
9056 9587 1.109609 GTACTCCCTCCGTTCCGATT 58.890 55.000 0.00 0.00 0.00 3.34
9057 9588 0.033796 TGTACTCCCTCCGTTCCGAT 60.034 55.000 0.00 0.00 0.00 4.18
9058 9589 0.251297 TTGTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
9059 9590 0.172803 CTTGTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
9060 9591 1.553706 TCTTGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
9061 9592 2.353505 GGTTCTTGTACTCCCTCCGTTC 60.354 54.545 0.00 0.00 0.00 3.95
9062 9593 1.622312 GGTTCTTGTACTCCCTCCGTT 59.378 52.381 0.00 0.00 0.00 4.44
9063 9594 1.264295 GGTTCTTGTACTCCCTCCGT 58.736 55.000 0.00 0.00 0.00 4.69
9064 9595 0.172803 CGGTTCTTGTACTCCCTCCG 59.827 60.000 0.00 0.00 0.00 4.63
9065 9596 0.535797 CCGGTTCTTGTACTCCCTCC 59.464 60.000 0.00 0.00 0.00 4.30
9066 9597 0.108281 GCCGGTTCTTGTACTCCCTC 60.108 60.000 1.90 0.00 0.00 4.30
9067 9598 0.544595 AGCCGGTTCTTGTACTCCCT 60.545 55.000 1.90 0.00 0.00 4.20
9068 9599 0.391263 CAGCCGGTTCTTGTACTCCC 60.391 60.000 1.90 0.00 0.00 4.30
9069 9600 0.320697 ACAGCCGGTTCTTGTACTCC 59.679 55.000 1.90 0.00 0.00 3.85
9070 9601 2.165319 AACAGCCGGTTCTTGTACTC 57.835 50.000 1.90 0.00 33.35 2.59
9125 9669 2.009774 AGTAACTTCACATGCCGATGC 58.990 47.619 0.00 0.00 32.14 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.