Multiple sequence alignment - TraesCS4D01G148300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G148300 chr4D 100.000 4671 0 0 1 4671 147078523 147083193 0.000000e+00 8626.0
1 TraesCS4D01G148300 chr4D 81.441 819 96 26 3865 4671 497519140 497518366 1.850000e-173 619.0
2 TraesCS4D01G148300 chr4D 94.231 104 5 1 1991 2094 96052141 96052243 1.740000e-34 158.0
3 TraesCS4D01G148300 chrUn 91.047 1452 89 19 2441 3863 52693188 52694627 0.000000e+00 1923.0
4 TraesCS4D01G148300 chrUn 91.047 1452 89 19 2441 3863 306230921 306232360 0.000000e+00 1923.0
5 TraesCS4D01G148300 chrUn 88.998 818 66 12 3865 4671 8103928 8104732 0.000000e+00 990.0
6 TraesCS4D01G148300 chrUn 89.431 615 41 11 408 1017 52690818 52691413 0.000000e+00 754.0
7 TraesCS4D01G148300 chrUn 89.431 615 41 11 408 1017 306228551 306229146 0.000000e+00 754.0
8 TraesCS4D01G148300 chrUn 92.060 403 24 3 1496 1898 52691415 52691809 1.140000e-155 560.0
9 TraesCS4D01G148300 chrUn 92.060 403 24 3 1496 1898 306229148 306229542 1.140000e-155 560.0
10 TraesCS4D01G148300 chrUn 92.829 251 11 4 1648 1898 52692122 52692365 1.600000e-94 357.0
11 TraesCS4D01G148300 chrUn 92.829 251 11 4 1648 1898 306229855 306230098 1.600000e-94 357.0
12 TraesCS4D01G148300 chrUn 92.430 251 11 5 1648 1898 52692560 52692802 7.440000e-93 351.0
13 TraesCS4D01G148300 chrUn 92.430 251 11 5 1648 1898 306230293 306230535 7.440000e-93 351.0
14 TraesCS4D01G148300 chrUn 90.566 212 18 2 2094 2304 52691806 52692016 3.560000e-71 279.0
15 TraesCS4D01G148300 chrUn 90.566 212 18 2 2094 2304 306229539 306229749 3.560000e-71 279.0
16 TraesCS4D01G148300 chrUn 90.094 212 19 2 2094 2304 52692799 52693009 1.660000e-69 274.0
17 TraesCS4D01G148300 chrUn 90.094 212 19 2 2094 2304 306230532 306230742 1.660000e-69 274.0
18 TraesCS4D01G148300 chr6B 89.920 1508 68 25 408 1896 75914743 75916185 0.000000e+00 1866.0
19 TraesCS4D01G148300 chr6B 94.869 1111 50 4 2754 3863 75917709 75918813 0.000000e+00 1729.0
20 TraesCS4D01G148300 chr6B 84.567 473 35 21 2294 2738 75917169 75917631 7.180000e-118 435.0
21 TraesCS4D01G148300 chr6B 86.984 315 37 4 20 333 375363232 375363543 7.440000e-93 351.0
22 TraesCS4D01G148300 chr6B 86.984 315 36 4 21 333 664021795 664021484 2.670000e-92 350.0
23 TraesCS4D01G148300 chr6D 95.320 1111 45 4 2754 3863 36224231 36225335 0.000000e+00 1757.0
24 TraesCS4D01G148300 chr6D 89.098 1220 60 32 712 1896 36221789 36222970 0.000000e+00 1448.0
25 TraesCS4D01G148300 chr6D 79.023 696 136 10 2872 3562 470382746 470382056 7.080000e-128 468.0
26 TraesCS4D01G148300 chr6D 73.752 781 186 19 2874 3646 148483022 148483791 5.910000e-74 289.0
27 TraesCS4D01G148300 chr6D 85.199 277 28 6 408 674 36221519 36221792 5.960000e-69 272.0
28 TraesCS4D01G148300 chr4A 93.146 1211 37 19 615 1819 379464314 379465484 0.000000e+00 1735.0
29 TraesCS4D01G148300 chr4A 95.263 971 40 3 2821 3791 379468372 379469336 0.000000e+00 1533.0
30 TraesCS4D01G148300 chr4A 88.313 830 69 13 3865 4671 363995232 363996056 0.000000e+00 970.0
31 TraesCS4D01G148300 chr4A 84.599 461 40 15 2293 2738 379466457 379466901 3.340000e-116 429.0
32 TraesCS4D01G148300 chr4A 91.892 111 7 2 1991 2101 321328134 321328026 2.250000e-33 154.0
33 TraesCS4D01G148300 chr4A 93.617 94 5 1 476 569 379464235 379464327 6.300000e-29 139.0
34 TraesCS4D01G148300 chr4A 94.737 76 4 0 3788 3863 379478533 379478608 8.210000e-23 119.0
35 TraesCS4D01G148300 chr4A 94.737 57 3 0 1842 1898 379466106 379466162 6.440000e-14 89.8
36 TraesCS4D01G148300 chr6A 89.120 1296 56 34 608 1896 40217014 40218231 0.000000e+00 1533.0
37 TraesCS4D01G148300 chr6A 94.217 1003 50 5 2796 3796 40221062 40222058 0.000000e+00 1524.0
38 TraesCS4D01G148300 chr6A 85.798 514 54 8 4167 4671 568140610 568141113 1.150000e-145 527.0
39 TraesCS4D01G148300 chr6A 78.129 695 144 8 2872 3562 615131606 615132296 7.180000e-118 435.0
40 TraesCS4D01G148300 chr6A 89.583 96 7 1 408 500 40216729 40216824 8.210000e-23 119.0
41 TraesCS4D01G148300 chr6A 90.698 86 5 2 511 596 40216947 40217029 1.370000e-20 111.0
42 TraesCS4D01G148300 chr6A 90.476 84 8 0 3780 3863 40222082 40222165 1.370000e-20 111.0
43 TraesCS4D01G148300 chr6A 97.143 35 1 0 1894 1928 86450940 86450974 5.050000e-05 60.2
44 TraesCS4D01G148300 chr5A 91.554 817 55 9 3866 4671 271566331 271565518 0.000000e+00 1114.0
45 TraesCS4D01G148300 chr5A 90.312 640 39 5 3866 4497 546391557 546390933 0.000000e+00 817.0
46 TraesCS4D01G148300 chr2D 90.709 818 60 11 3865 4671 19505067 19504255 0.000000e+00 1075.0
47 TraesCS4D01G148300 chr2D 86.462 325 35 8 21 343 205625317 205625000 9.620000e-92 348.0
48 TraesCS4D01G148300 chr3B 90.170 824 65 9 3861 4671 62693906 62694726 0.000000e+00 1059.0
49 TraesCS4D01G148300 chr3B 78.713 202 24 14 1910 2094 732735166 732734967 2.950000e-22 117.0
50 TraesCS4D01G148300 chr3A 92.081 745 48 4 3849 4584 19521026 19520284 0.000000e+00 1038.0
51 TraesCS4D01G148300 chr7B 87.564 780 79 5 3865 4635 41678391 41679161 0.000000e+00 887.0
52 TraesCS4D01G148300 chr7B 81.650 812 99 22 3866 4666 302283898 302283126 3.070000e-176 628.0
53 TraesCS4D01G148300 chr7B 80.093 643 90 18 3864 4498 172331162 172331774 1.190000e-120 444.0
54 TraesCS4D01G148300 chr7B 84.615 169 20 6 1931 2097 344305626 344305462 3.740000e-36 163.0
55 TraesCS4D01G148300 chr1D 87.436 780 67 14 3866 4636 415987365 415988122 0.000000e+00 869.0
56 TraesCS4D01G148300 chr1D 80.764 681 117 14 2890 3563 477189782 477190455 1.930000e-143 520.0
57 TraesCS4D01G148300 chr1D 87.220 313 36 4 23 334 433461621 433461930 2.070000e-93 353.0
58 TraesCS4D01G148300 chr1D 77.966 354 72 6 1396 1746 474375500 474375850 2.830000e-52 217.0
59 TraesCS4D01G148300 chr1D 83.544 158 19 5 1926 2076 417310877 417310720 1.750000e-29 141.0
60 TraesCS4D01G148300 chr1D 97.368 38 1 0 1894 1931 295183085 295183122 1.080000e-06 65.8
61 TraesCS4D01G148300 chr2A 81.929 819 99 22 3865 4671 20235520 20234739 0.000000e+00 647.0
62 TraesCS4D01G148300 chr2A 75.854 439 87 17 4065 4492 490877115 490877545 6.130000e-49 206.0
63 TraesCS4D01G148300 chr2A 94.444 36 2 0 1890 1925 387541040 387541075 6.530000e-04 56.5
64 TraesCS4D01G148300 chr3D 89.241 316 30 4 17 331 123312986 123313298 4.380000e-105 392.0
65 TraesCS4D01G148300 chr3D 94.231 104 5 1 1991 2094 546467721 546467823 1.740000e-34 158.0
66 TraesCS4D01G148300 chr3D 91.489 47 2 2 1882 1928 311543325 311543369 3.900000e-06 63.9
67 TraesCS4D01G148300 chr3D 100.000 32 0 0 1897 1928 575884289 575884320 5.050000e-05 60.2
68 TraesCS4D01G148300 chr7A 87.382 317 34 5 18 333 156272155 156272466 4.440000e-95 359.0
69 TraesCS4D01G148300 chr7A 86.769 325 37 5 20 341 486173325 486173004 1.600000e-94 357.0
70 TraesCS4D01G148300 chr7A 79.289 478 83 16 1277 1746 545934593 545935062 2.100000e-83 320.0
71 TraesCS4D01G148300 chr5B 87.821 312 30 8 21 329 484829581 484829275 4.440000e-95 359.0
72 TraesCS4D01G148300 chr5B 80.100 201 23 12 1910 2094 259967395 259967594 2.930000e-27 134.0
73 TraesCS4D01G148300 chr5D 87.460 311 34 5 26 334 29498903 29498596 2.070000e-93 353.0
74 TraesCS4D01G148300 chr5D 91.964 112 7 2 1991 2101 373934481 373934371 6.260000e-34 156.0
75 TraesCS4D01G148300 chr1A 82.561 367 58 6 1382 1745 573242798 573243161 7.540000e-83 318.0
76 TraesCS4D01G148300 chr1B 81.744 367 61 6 1382 1745 664777022 664777385 7.600000e-78 302.0
77 TraesCS4D01G148300 chr1B 77.717 368 76 6 1382 1746 659724071 659724435 2.190000e-53 220.0
78 TraesCS4D01G148300 chr1B 84.906 159 18 6 1926 2079 223769142 223768985 6.260000e-34 156.0
79 TraesCS4D01G148300 chr7D 85.882 170 17 7 1926 2094 69148008 69147845 1.730000e-39 174.0
80 TraesCS4D01G148300 chr7D 94.231 104 5 1 1991 2094 209496745 209496847 1.740000e-34 158.0
81 TraesCS4D01G148300 chr7D 100.000 32 0 0 1897 1928 423498474 423498505 5.050000e-05 60.2
82 TraesCS4D01G148300 chr7D 89.583 48 3 2 1897 1942 634780702 634780655 5.050000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G148300 chr4D 147078523 147083193 4670 False 8626.000000 8626 100.000000 1 4671 1 chr4D.!!$F2 4670
1 TraesCS4D01G148300 chr4D 497518366 497519140 774 True 619.000000 619 81.441000 3865 4671 1 chr4D.!!$R1 806
2 TraesCS4D01G148300 chrUn 8103928 8104732 804 False 990.000000 990 88.998000 3865 4671 1 chrUn.!!$F1 806
3 TraesCS4D01G148300 chrUn 52690818 52694627 3809 False 642.571429 1923 91.208143 408 3863 7 chrUn.!!$F2 3455
4 TraesCS4D01G148300 chrUn 306228551 306232360 3809 False 642.571429 1923 91.208143 408 3863 7 chrUn.!!$F3 3455
5 TraesCS4D01G148300 chr6B 75914743 75918813 4070 False 1343.333333 1866 89.785333 408 3863 3 chr6B.!!$F2 3455
6 TraesCS4D01G148300 chr6D 36221519 36225335 3816 False 1159.000000 1757 89.872333 408 3863 3 chr6D.!!$F2 3455
7 TraesCS4D01G148300 chr6D 470382056 470382746 690 True 468.000000 468 79.023000 2872 3562 1 chr6D.!!$R1 690
8 TraesCS4D01G148300 chr6D 148483022 148483791 769 False 289.000000 289 73.752000 2874 3646 1 chr6D.!!$F1 772
9 TraesCS4D01G148300 chr4A 363995232 363996056 824 False 970.000000 970 88.313000 3865 4671 1 chr4A.!!$F1 806
10 TraesCS4D01G148300 chr4A 379464235 379469336 5101 False 785.160000 1735 92.272400 476 3791 5 chr4A.!!$F3 3315
11 TraesCS4D01G148300 chr6A 40216729 40222165 5436 False 679.600000 1533 90.818800 408 3863 5 chr6A.!!$F4 3455
12 TraesCS4D01G148300 chr6A 568140610 568141113 503 False 527.000000 527 85.798000 4167 4671 1 chr6A.!!$F2 504
13 TraesCS4D01G148300 chr6A 615131606 615132296 690 False 435.000000 435 78.129000 2872 3562 1 chr6A.!!$F3 690
14 TraesCS4D01G148300 chr5A 271565518 271566331 813 True 1114.000000 1114 91.554000 3866 4671 1 chr5A.!!$R1 805
15 TraesCS4D01G148300 chr5A 546390933 546391557 624 True 817.000000 817 90.312000 3866 4497 1 chr5A.!!$R2 631
16 TraesCS4D01G148300 chr2D 19504255 19505067 812 True 1075.000000 1075 90.709000 3865 4671 1 chr2D.!!$R1 806
17 TraesCS4D01G148300 chr3B 62693906 62694726 820 False 1059.000000 1059 90.170000 3861 4671 1 chr3B.!!$F1 810
18 TraesCS4D01G148300 chr3A 19520284 19521026 742 True 1038.000000 1038 92.081000 3849 4584 1 chr3A.!!$R1 735
19 TraesCS4D01G148300 chr7B 41678391 41679161 770 False 887.000000 887 87.564000 3865 4635 1 chr7B.!!$F1 770
20 TraesCS4D01G148300 chr7B 302283126 302283898 772 True 628.000000 628 81.650000 3866 4666 1 chr7B.!!$R1 800
21 TraesCS4D01G148300 chr7B 172331162 172331774 612 False 444.000000 444 80.093000 3864 4498 1 chr7B.!!$F2 634
22 TraesCS4D01G148300 chr1D 415987365 415988122 757 False 869.000000 869 87.436000 3866 4636 1 chr1D.!!$F2 770
23 TraesCS4D01G148300 chr1D 477189782 477190455 673 False 520.000000 520 80.764000 2890 3563 1 chr1D.!!$F5 673
24 TraesCS4D01G148300 chr2A 20234739 20235520 781 True 647.000000 647 81.929000 3865 4671 1 chr2A.!!$R1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.178068 TGAGCTGTCGATTTAGGGCC 59.822 55.0 0.0 0.0 0.00 5.80 F
397 398 0.253044 CTCAGATCCTCCCCGCAAAA 59.747 55.0 0.0 0.0 0.00 2.44 F
1365 1539 0.534412 AGACCTTCATGGAGCAGTCG 59.466 55.0 0.0 0.0 39.71 4.18 F
2100 3877 0.179150 CTGTGAGTAGTCTGAGCGGC 60.179 60.0 0.0 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1512 1686 0.460284 CGCCGAACATAACAGCCTCT 60.460 55.000 0.00 0.0 0.0 3.69 R
2081 3858 0.179150 GCCGCTCAGACTACTCACAG 60.179 60.000 0.00 0.0 0.0 3.66 R
2608 5993 1.064758 AGGTGCTTGAACCACTCAACA 60.065 47.619 0.01 0.0 43.2 3.33 R
4045 9625 4.503910 TCATACGCTATATGGTTCATGCC 58.496 43.478 5.33 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.820595 CACTCCATTGAGCTGTCGA 57.179 52.632 0.00 0.00 42.74 4.20
19 20 2.306341 CACTCCATTGAGCTGTCGAT 57.694 50.000 0.00 0.00 42.74 3.59
20 21 2.625737 CACTCCATTGAGCTGTCGATT 58.374 47.619 0.00 0.00 42.74 3.34
21 22 3.005554 CACTCCATTGAGCTGTCGATTT 58.994 45.455 0.00 0.00 42.74 2.17
22 23 4.183865 CACTCCATTGAGCTGTCGATTTA 58.816 43.478 0.00 0.00 42.74 1.40
23 24 4.269603 CACTCCATTGAGCTGTCGATTTAG 59.730 45.833 0.00 0.00 42.74 1.85
24 25 3.797039 TCCATTGAGCTGTCGATTTAGG 58.203 45.455 0.00 0.00 0.00 2.69
25 26 2.874701 CCATTGAGCTGTCGATTTAGGG 59.125 50.000 0.00 0.00 0.00 3.53
26 27 2.024176 TTGAGCTGTCGATTTAGGGC 57.976 50.000 0.00 0.00 0.00 5.19
27 28 0.178068 TGAGCTGTCGATTTAGGGCC 59.822 55.000 0.00 0.00 0.00 5.80
28 29 0.466124 GAGCTGTCGATTTAGGGCCT 59.534 55.000 12.58 12.58 0.00 5.19
29 30 0.466124 AGCTGTCGATTTAGGGCCTC 59.534 55.000 10.74 0.00 0.00 4.70
30 31 0.466124 GCTGTCGATTTAGGGCCTCT 59.534 55.000 10.74 0.00 0.00 3.69
31 32 1.134371 GCTGTCGATTTAGGGCCTCTT 60.134 52.381 10.74 0.00 0.00 2.85
32 33 2.681097 GCTGTCGATTTAGGGCCTCTTT 60.681 50.000 10.74 0.00 0.00 2.52
33 34 2.939103 CTGTCGATTTAGGGCCTCTTTG 59.061 50.000 10.74 0.00 0.00 2.77
34 35 2.569853 TGTCGATTTAGGGCCTCTTTGA 59.430 45.455 10.74 2.40 0.00 2.69
35 36 3.199946 TGTCGATTTAGGGCCTCTTTGAT 59.800 43.478 10.74 0.00 0.00 2.57
36 37 4.200092 GTCGATTTAGGGCCTCTTTGATT 58.800 43.478 10.74 0.00 0.00 2.57
37 38 4.273724 GTCGATTTAGGGCCTCTTTGATTC 59.726 45.833 10.74 0.00 0.00 2.52
38 39 3.248602 CGATTTAGGGCCTCTTTGATTCG 59.751 47.826 10.74 6.93 0.00 3.34
39 40 3.713826 TTTAGGGCCTCTTTGATTCGT 57.286 42.857 10.74 0.00 0.00 3.85
40 41 4.829872 TTTAGGGCCTCTTTGATTCGTA 57.170 40.909 10.74 0.00 0.00 3.43
41 42 2.990066 AGGGCCTCTTTGATTCGTAG 57.010 50.000 0.00 0.00 0.00 3.51
42 43 1.486726 AGGGCCTCTTTGATTCGTAGG 59.513 52.381 0.00 0.00 0.00 3.18
43 44 1.485066 GGGCCTCTTTGATTCGTAGGA 59.515 52.381 0.84 0.00 0.00 2.94
44 45 2.104963 GGGCCTCTTTGATTCGTAGGAT 59.895 50.000 0.84 0.00 0.00 3.24
45 46 3.433740 GGGCCTCTTTGATTCGTAGGATT 60.434 47.826 0.84 0.00 0.00 3.01
46 47 4.200092 GGCCTCTTTGATTCGTAGGATTT 58.800 43.478 0.00 0.00 0.00 2.17
47 48 4.640647 GGCCTCTTTGATTCGTAGGATTTT 59.359 41.667 0.00 0.00 0.00 1.82
48 49 5.449177 GGCCTCTTTGATTCGTAGGATTTTG 60.449 44.000 0.00 0.00 0.00 2.44
49 50 5.354234 GCCTCTTTGATTCGTAGGATTTTGA 59.646 40.000 0.00 0.00 0.00 2.69
50 51 6.128007 GCCTCTTTGATTCGTAGGATTTTGAA 60.128 38.462 0.00 0.00 0.00 2.69
51 52 7.574967 GCCTCTTTGATTCGTAGGATTTTGAAA 60.575 37.037 0.00 0.00 0.00 2.69
52 53 8.296713 CCTCTTTGATTCGTAGGATTTTGAAAA 58.703 33.333 0.00 0.00 0.00 2.29
53 54 9.118236 CTCTTTGATTCGTAGGATTTTGAAAAC 57.882 33.333 0.00 0.00 0.00 2.43
54 55 8.625651 TCTTTGATTCGTAGGATTTTGAAAACA 58.374 29.630 0.00 0.00 0.00 2.83
55 56 8.568732 TTTGATTCGTAGGATTTTGAAAACAC 57.431 30.769 0.00 0.00 0.00 3.32
56 57 7.265647 TGATTCGTAGGATTTTGAAAACACA 57.734 32.000 0.00 0.00 0.00 3.72
57 58 7.359595 TGATTCGTAGGATTTTGAAAACACAG 58.640 34.615 0.00 0.00 0.00 3.66
58 59 5.682943 TCGTAGGATTTTGAAAACACAGG 57.317 39.130 0.00 0.00 0.00 4.00
59 60 5.369833 TCGTAGGATTTTGAAAACACAGGA 58.630 37.500 0.00 0.00 0.00 3.86
60 61 5.823570 TCGTAGGATTTTGAAAACACAGGAA 59.176 36.000 0.00 0.00 0.00 3.36
61 62 6.488683 TCGTAGGATTTTGAAAACACAGGAAT 59.511 34.615 0.00 0.00 0.00 3.01
62 63 7.662258 TCGTAGGATTTTGAAAACACAGGAATA 59.338 33.333 0.00 0.00 0.00 1.75
63 64 7.962918 CGTAGGATTTTGAAAACACAGGAATAG 59.037 37.037 0.00 0.00 0.00 1.73
64 65 7.232118 AGGATTTTGAAAACACAGGAATAGG 57.768 36.000 0.00 0.00 0.00 2.57
65 66 7.010160 AGGATTTTGAAAACACAGGAATAGGA 58.990 34.615 0.00 0.00 0.00 2.94
66 67 7.508977 AGGATTTTGAAAACACAGGAATAGGAA 59.491 33.333 0.00 0.00 0.00 3.36
67 68 8.147704 GGATTTTGAAAACACAGGAATAGGAAA 58.852 33.333 0.00 0.00 0.00 3.13
68 69 9.541143 GATTTTGAAAACACAGGAATAGGAAAA 57.459 29.630 0.00 0.00 0.00 2.29
69 70 8.940768 TTTTGAAAACACAGGAATAGGAAAAG 57.059 30.769 0.00 0.00 0.00 2.27
70 71 7.654022 TTGAAAACACAGGAATAGGAAAAGT 57.346 32.000 0.00 0.00 0.00 2.66
71 72 8.754991 TTGAAAACACAGGAATAGGAAAAGTA 57.245 30.769 0.00 0.00 0.00 2.24
72 73 8.934023 TGAAAACACAGGAATAGGAAAAGTAT 57.066 30.769 0.00 0.00 0.00 2.12
80 81 9.853177 ACAGGAATAGGAAAAGTATAAGATTGG 57.147 33.333 0.00 0.00 0.00 3.16
85 86 9.853177 AATAGGAAAAGTATAAGATTGGAGTGG 57.147 33.333 0.00 0.00 0.00 4.00
86 87 6.122964 AGGAAAAGTATAAGATTGGAGTGGC 58.877 40.000 0.00 0.00 0.00 5.01
87 88 5.885912 GGAAAAGTATAAGATTGGAGTGGCA 59.114 40.000 0.00 0.00 0.00 4.92
88 89 6.547510 GGAAAAGTATAAGATTGGAGTGGCAT 59.452 38.462 0.00 0.00 0.00 4.40
89 90 6.949352 AAAGTATAAGATTGGAGTGGCATG 57.051 37.500 0.00 0.00 0.00 4.06
90 91 5.636903 AGTATAAGATTGGAGTGGCATGT 57.363 39.130 0.00 0.00 0.00 3.21
91 92 5.615289 AGTATAAGATTGGAGTGGCATGTC 58.385 41.667 0.00 0.00 0.00 3.06
92 93 2.134789 AAGATTGGAGTGGCATGTCC 57.865 50.000 11.04 11.04 0.00 4.02
93 94 0.994247 AGATTGGAGTGGCATGTCCA 59.006 50.000 15.51 15.51 44.18 4.02
102 103 1.838112 TGGCATGTCCACTTGAATCC 58.162 50.000 4.93 0.00 40.72 3.01
103 104 1.355381 TGGCATGTCCACTTGAATCCT 59.645 47.619 4.93 0.00 40.72 3.24
104 105 2.575735 TGGCATGTCCACTTGAATCCTA 59.424 45.455 4.93 0.00 40.72 2.94
105 106 3.202818 TGGCATGTCCACTTGAATCCTAT 59.797 43.478 4.93 0.00 40.72 2.57
106 107 4.411869 TGGCATGTCCACTTGAATCCTATA 59.588 41.667 4.93 0.00 40.72 1.31
107 108 4.999950 GGCATGTCCACTTGAATCCTATAG 59.000 45.833 0.00 0.00 34.01 1.31
108 109 4.999950 GCATGTCCACTTGAATCCTATAGG 59.000 45.833 13.07 13.07 0.00 2.57
109 110 8.157082 GGCATGTCCACTTGAATCCTATAGGA 62.157 46.154 23.76 23.76 41.05 2.94
110 111 9.380119 GGCATGTCCACTTGAATCCTATAGGAT 62.380 44.444 26.04 26.04 45.17 3.24
122 123 5.735285 TCCTATAGGATCAGCAATGAGTG 57.265 43.478 18.00 0.00 39.78 3.51
123 124 5.150715 TCCTATAGGATCAGCAATGAGTGT 58.849 41.667 18.00 0.00 39.78 3.55
124 125 5.604231 TCCTATAGGATCAGCAATGAGTGTT 59.396 40.000 18.00 0.00 39.78 3.32
125 126 6.100279 TCCTATAGGATCAGCAATGAGTGTTT 59.900 38.462 18.00 0.00 39.78 2.83
126 127 6.204301 CCTATAGGATCAGCAATGAGTGTTTG 59.796 42.308 14.11 0.00 37.39 2.93
127 128 4.025040 AGGATCAGCAATGAGTGTTTGA 57.975 40.909 0.00 0.00 0.00 2.69
128 129 4.597004 AGGATCAGCAATGAGTGTTTGAT 58.403 39.130 0.00 2.65 36.79 2.57
129 130 4.398358 AGGATCAGCAATGAGTGTTTGATG 59.602 41.667 6.73 0.00 40.80 3.07
130 131 3.564235 TCAGCAATGAGTGTTTGATGC 57.436 42.857 0.00 0.00 39.63 3.91
131 132 2.229543 TCAGCAATGAGTGTTTGATGCC 59.770 45.455 0.00 0.00 39.63 4.40
132 133 2.029739 CAGCAATGAGTGTTTGATGCCA 60.030 45.455 0.00 0.00 34.21 4.92
133 134 2.029649 AGCAATGAGTGTTTGATGCCAC 60.030 45.455 0.00 0.00 34.44 5.01
134 135 2.288334 GCAATGAGTGTTTGATGCCACA 60.288 45.455 0.00 0.00 33.99 4.17
135 136 3.571571 CAATGAGTGTTTGATGCCACAG 58.428 45.455 0.00 0.00 33.99 3.66
136 137 2.636647 TGAGTGTTTGATGCCACAGA 57.363 45.000 0.00 0.00 33.99 3.41
137 138 2.929641 TGAGTGTTTGATGCCACAGAA 58.070 42.857 0.00 0.00 33.99 3.02
138 139 3.286353 TGAGTGTTTGATGCCACAGAAA 58.714 40.909 0.00 0.00 33.99 2.52
139 140 3.698539 TGAGTGTTTGATGCCACAGAAAA 59.301 39.130 0.00 0.00 33.99 2.29
140 141 4.159321 TGAGTGTTTGATGCCACAGAAAAA 59.841 37.500 0.00 0.00 33.99 1.94
141 142 5.163426 TGAGTGTTTGATGCCACAGAAAAAT 60.163 36.000 0.00 0.00 33.99 1.82
142 143 6.040278 TGAGTGTTTGATGCCACAGAAAAATA 59.960 34.615 0.00 0.00 33.99 1.40
143 144 6.815089 AGTGTTTGATGCCACAGAAAAATAA 58.185 32.000 0.00 0.00 33.99 1.40
144 145 7.271511 AGTGTTTGATGCCACAGAAAAATAAA 58.728 30.769 0.00 0.00 33.99 1.40
145 146 7.768120 AGTGTTTGATGCCACAGAAAAATAAAA 59.232 29.630 0.00 0.00 33.99 1.52
146 147 8.394121 GTGTTTGATGCCACAGAAAAATAAAAA 58.606 29.630 0.00 0.00 0.00 1.94
169 170 7.707774 AAAATTGTAAAAGGTGGTCGAAATG 57.292 32.000 0.00 0.00 0.00 2.32
170 171 4.839668 TTGTAAAAGGTGGTCGAAATGG 57.160 40.909 0.00 0.00 0.00 3.16
171 172 4.088056 TGTAAAAGGTGGTCGAAATGGA 57.912 40.909 0.00 0.00 0.00 3.41
172 173 4.658063 TGTAAAAGGTGGTCGAAATGGAT 58.342 39.130 0.00 0.00 0.00 3.41
173 174 4.457603 TGTAAAAGGTGGTCGAAATGGATG 59.542 41.667 0.00 0.00 0.00 3.51
174 175 2.879103 AAGGTGGTCGAAATGGATGT 57.121 45.000 0.00 0.00 0.00 3.06
175 176 2.879103 AGGTGGTCGAAATGGATGTT 57.121 45.000 0.00 0.00 0.00 2.71
176 177 3.992943 AGGTGGTCGAAATGGATGTTA 57.007 42.857 0.00 0.00 0.00 2.41
177 178 3.873910 AGGTGGTCGAAATGGATGTTAG 58.126 45.455 0.00 0.00 0.00 2.34
178 179 3.517901 AGGTGGTCGAAATGGATGTTAGA 59.482 43.478 0.00 0.00 0.00 2.10
179 180 4.164221 AGGTGGTCGAAATGGATGTTAGAT 59.836 41.667 0.00 0.00 0.00 1.98
180 181 4.881850 GGTGGTCGAAATGGATGTTAGATT 59.118 41.667 0.00 0.00 0.00 2.40
181 182 5.357032 GGTGGTCGAAATGGATGTTAGATTT 59.643 40.000 0.00 0.00 0.00 2.17
182 183 6.127730 GGTGGTCGAAATGGATGTTAGATTTT 60.128 38.462 0.00 0.00 0.00 1.82
183 184 7.066525 GGTGGTCGAAATGGATGTTAGATTTTA 59.933 37.037 0.00 0.00 0.00 1.52
184 185 8.621286 GTGGTCGAAATGGATGTTAGATTTTAT 58.379 33.333 0.00 0.00 0.00 1.40
185 186 9.839817 TGGTCGAAATGGATGTTAGATTTTATA 57.160 29.630 0.00 0.00 0.00 0.98
187 188 9.793245 GTCGAAATGGATGTTAGATTTTATACG 57.207 33.333 0.00 0.00 0.00 3.06
188 189 9.752961 TCGAAATGGATGTTAGATTTTATACGA 57.247 29.630 0.00 0.00 0.00 3.43
254 255 8.771521 ATCCAATCTTATGAATCAAATGACCA 57.228 30.769 0.00 0.00 0.00 4.02
255 256 8.592529 TCCAATCTTATGAATCAAATGACCAA 57.407 30.769 0.00 0.00 0.00 3.67
256 257 9.204337 TCCAATCTTATGAATCAAATGACCAAT 57.796 29.630 0.00 0.00 0.00 3.16
326 327 6.769608 AATTTTCGTTTGAATCAAAGGAGC 57.230 33.333 24.04 7.40 44.84 4.70
327 328 3.915437 TTCGTTTGAATCAAAGGAGCC 57.085 42.857 24.04 7.09 44.84 4.70
328 329 2.159382 TCGTTTGAATCAAAGGAGCCC 58.841 47.619 22.36 4.72 41.28 5.19
329 330 2.162681 CGTTTGAATCAAAGGAGCCCT 58.837 47.619 19.98 0.00 40.31 5.19
330 331 6.676322 TTTCGTTTGAATCAAAGGAGCCCTT 61.676 40.000 24.04 0.99 44.84 3.95
331 332 3.756434 CGTTTGAATCAAAGGAGCCCTTA 59.244 43.478 19.98 0.00 43.92 2.69
332 333 4.142600 CGTTTGAATCAAAGGAGCCCTTAG 60.143 45.833 19.98 0.00 43.92 2.18
333 334 4.927267 TTGAATCAAAGGAGCCCTTAGA 57.073 40.909 6.88 0.00 43.92 2.10
334 335 5.456921 TTGAATCAAAGGAGCCCTTAGAT 57.543 39.130 6.88 0.00 43.92 1.98
335 336 5.456921 TGAATCAAAGGAGCCCTTAGATT 57.543 39.130 6.88 0.00 43.92 2.40
336 337 6.575244 TGAATCAAAGGAGCCCTTAGATTA 57.425 37.500 6.88 0.00 43.92 1.75
337 338 7.154191 TGAATCAAAGGAGCCCTTAGATTAT 57.846 36.000 6.88 0.00 43.92 1.28
338 339 7.000472 TGAATCAAAGGAGCCCTTAGATTATG 59.000 38.462 6.88 1.99 43.92 1.90
339 340 5.310409 TCAAAGGAGCCCTTAGATTATGG 57.690 43.478 6.88 0.00 43.92 2.74
340 341 4.975147 TCAAAGGAGCCCTTAGATTATGGA 59.025 41.667 6.88 0.00 43.92 3.41
341 342 5.072329 TCAAAGGAGCCCTTAGATTATGGAG 59.928 44.000 6.88 0.00 43.92 3.86
342 343 4.493819 AGGAGCCCTTAGATTATGGAGA 57.506 45.455 0.00 0.00 0.00 3.71
343 344 4.832492 AGGAGCCCTTAGATTATGGAGAA 58.168 43.478 0.00 0.00 0.00 2.87
344 345 4.595350 AGGAGCCCTTAGATTATGGAGAAC 59.405 45.833 0.00 0.00 0.00 3.01
345 346 4.595350 GGAGCCCTTAGATTATGGAGAACT 59.405 45.833 0.00 0.00 0.00 3.01
346 347 5.512232 GGAGCCCTTAGATTATGGAGAACTG 60.512 48.000 0.00 0.00 0.00 3.16
347 348 5.219739 AGCCCTTAGATTATGGAGAACTGA 58.780 41.667 0.00 0.00 0.00 3.41
348 349 5.667626 AGCCCTTAGATTATGGAGAACTGAA 59.332 40.000 0.00 0.00 0.00 3.02
349 350 6.331307 AGCCCTTAGATTATGGAGAACTGAAT 59.669 38.462 0.00 0.00 0.00 2.57
350 351 6.652900 GCCCTTAGATTATGGAGAACTGAATC 59.347 42.308 0.00 0.00 0.00 2.52
351 352 7.164803 CCCTTAGATTATGGAGAACTGAATCC 58.835 42.308 0.00 0.00 36.05 3.01
357 358 3.845781 TGGAGAACTGAATCCATAGGC 57.154 47.619 0.00 0.00 40.70 3.93
358 359 3.387962 TGGAGAACTGAATCCATAGGCT 58.612 45.455 0.00 0.00 40.70 4.58
359 360 3.389329 TGGAGAACTGAATCCATAGGCTC 59.611 47.826 0.00 0.00 40.70 4.70
360 361 3.645687 GGAGAACTGAATCCATAGGCTCT 59.354 47.826 0.00 0.00 35.54 4.09
361 362 4.835615 GGAGAACTGAATCCATAGGCTCTA 59.164 45.833 0.00 0.00 35.54 2.43
362 363 5.483583 GGAGAACTGAATCCATAGGCTCTAT 59.516 44.000 0.00 0.00 35.54 1.98
363 364 6.357579 AGAACTGAATCCATAGGCTCTATG 57.642 41.667 12.68 12.68 0.00 2.23
364 365 4.550076 ACTGAATCCATAGGCTCTATGC 57.450 45.455 13.70 4.60 41.94 3.14
365 366 3.056250 ACTGAATCCATAGGCTCTATGCG 60.056 47.826 13.70 9.12 44.05 4.73
366 367 3.165071 TGAATCCATAGGCTCTATGCGA 58.835 45.455 13.70 12.61 44.05 5.10
367 368 3.771479 TGAATCCATAGGCTCTATGCGAT 59.229 43.478 13.70 13.76 44.05 4.58
368 369 4.142071 TGAATCCATAGGCTCTATGCGATC 60.142 45.833 13.70 11.38 44.05 3.69
369 370 2.807676 TCCATAGGCTCTATGCGATCA 58.192 47.619 13.70 0.00 44.05 2.92
370 371 3.165071 TCCATAGGCTCTATGCGATCAA 58.835 45.455 13.70 0.00 44.05 2.57
371 372 3.578282 TCCATAGGCTCTATGCGATCAAA 59.422 43.478 13.70 0.00 44.05 2.69
372 373 4.040339 TCCATAGGCTCTATGCGATCAAAA 59.960 41.667 13.70 0.00 44.05 2.44
373 374 4.391216 CCATAGGCTCTATGCGATCAAAAG 59.609 45.833 13.70 0.00 44.05 2.27
374 375 3.550437 AGGCTCTATGCGATCAAAAGT 57.450 42.857 0.00 0.00 44.05 2.66
375 376 3.201290 AGGCTCTATGCGATCAAAAGTG 58.799 45.455 0.00 0.00 44.05 3.16
376 377 3.118629 AGGCTCTATGCGATCAAAAGTGA 60.119 43.478 0.00 0.00 44.05 3.41
377 378 3.247173 GGCTCTATGCGATCAAAAGTGAG 59.753 47.826 0.00 0.00 44.05 3.51
378 379 3.303001 GCTCTATGCGATCAAAAGTGAGC 60.303 47.826 0.00 0.00 37.14 4.26
379 380 4.118410 CTCTATGCGATCAAAAGTGAGCT 58.882 43.478 0.00 0.00 38.05 4.09
380 381 4.115516 TCTATGCGATCAAAAGTGAGCTC 58.884 43.478 6.82 6.82 38.05 4.09
381 382 2.168326 TGCGATCAAAAGTGAGCTCA 57.832 45.000 13.74 13.74 38.05 4.26
382 383 2.071540 TGCGATCAAAAGTGAGCTCAG 58.928 47.619 18.89 4.96 38.05 3.35
383 384 2.289010 TGCGATCAAAAGTGAGCTCAGA 60.289 45.455 18.89 11.06 38.05 3.27
384 385 2.935201 GCGATCAAAAGTGAGCTCAGAT 59.065 45.455 18.89 15.70 38.05 2.90
385 386 3.001127 GCGATCAAAAGTGAGCTCAGATC 59.999 47.826 23.39 23.39 38.05 2.75
386 387 3.555139 CGATCAAAAGTGAGCTCAGATCC 59.445 47.826 25.50 13.54 38.05 3.36
387 388 4.680172 CGATCAAAAGTGAGCTCAGATCCT 60.680 45.833 25.50 15.25 38.05 3.24
388 389 4.199432 TCAAAAGTGAGCTCAGATCCTC 57.801 45.455 18.89 3.89 0.00 3.71
389 390 3.055530 TCAAAAGTGAGCTCAGATCCTCC 60.056 47.826 18.89 3.06 0.00 4.30
390 391 1.494960 AAGTGAGCTCAGATCCTCCC 58.505 55.000 18.89 2.22 0.00 4.30
391 392 0.398381 AGTGAGCTCAGATCCTCCCC 60.398 60.000 18.89 1.40 0.00 4.81
392 393 1.456518 TGAGCTCAGATCCTCCCCG 60.457 63.158 13.74 0.00 0.00 5.73
393 394 2.841988 AGCTCAGATCCTCCCCGC 60.842 66.667 0.00 0.00 0.00 6.13
394 395 3.157252 GCTCAGATCCTCCCCGCA 61.157 66.667 0.00 0.00 0.00 5.69
395 396 2.735772 GCTCAGATCCTCCCCGCAA 61.736 63.158 0.00 0.00 0.00 4.85
396 397 1.907739 CTCAGATCCTCCCCGCAAA 59.092 57.895 0.00 0.00 0.00 3.68
397 398 0.253044 CTCAGATCCTCCCCGCAAAA 59.747 55.000 0.00 0.00 0.00 2.44
398 399 0.695924 TCAGATCCTCCCCGCAAAAA 59.304 50.000 0.00 0.00 0.00 1.94
542 658 1.136984 GATCGCGTCTCCGTCTGTT 59.863 57.895 5.77 0.00 36.15 3.16
578 696 5.949952 ACCCAACCACATTTATTTCTCCTAC 59.050 40.000 0.00 0.00 0.00 3.18
580 698 6.435904 CCCAACCACATTTATTTCTCCTACAA 59.564 38.462 0.00 0.00 0.00 2.41
601 726 3.558608 AAAAATCCCAACCATCCCTCA 57.441 42.857 0.00 0.00 0.00 3.86
602 727 3.558608 AAAATCCCAACCATCCCTCAA 57.441 42.857 0.00 0.00 0.00 3.02
603 728 3.558608 AAATCCCAACCATCCCTCAAA 57.441 42.857 0.00 0.00 0.00 2.69
604 729 3.558608 AATCCCAACCATCCCTCAAAA 57.441 42.857 0.00 0.00 0.00 2.44
881 1040 2.721167 CGCTTCCGATCCCACCTCA 61.721 63.158 0.00 0.00 36.29 3.86
891 1050 1.146930 CCCACCTCACATCCATCCG 59.853 63.158 0.00 0.00 0.00 4.18
1125 1299 4.686227 GCGGTCTACGTACTGCTC 57.314 61.111 13.83 0.00 46.27 4.26
1128 1302 1.703438 CGGTCTACGTACTGCTCGCT 61.703 60.000 0.00 0.00 37.93 4.93
1365 1539 0.534412 AGACCTTCATGGAGCAGTCG 59.466 55.000 0.00 0.00 39.71 4.18
1775 2948 6.594788 TTTTATACCACTCCTCAAGTACGT 57.405 37.500 0.00 0.00 36.07 3.57
1776 2949 7.701539 TTTTATACCACTCCTCAAGTACGTA 57.298 36.000 0.00 0.00 36.07 3.57
1819 2995 2.032071 GGTGGGTTCGAGTGGGTG 59.968 66.667 0.00 0.00 0.00 4.61
1829 3005 3.612247 GAGTGGGTGCAGCGACCAT 62.612 63.158 24.73 9.76 37.80 3.55
1898 3675 3.390135 GTGTTGATCGAAACCAGTGAGA 58.610 45.455 0.00 0.00 0.00 3.27
1899 3676 3.184581 GTGTTGATCGAAACCAGTGAGAC 59.815 47.826 0.00 0.00 0.00 3.36
1900 3677 3.069586 TGTTGATCGAAACCAGTGAGACT 59.930 43.478 0.00 0.00 0.00 3.24
1901 3678 4.279922 TGTTGATCGAAACCAGTGAGACTA 59.720 41.667 0.00 0.00 0.00 2.59
1902 3679 4.703645 TGATCGAAACCAGTGAGACTAG 57.296 45.455 0.00 0.00 0.00 2.57
1903 3680 4.079970 TGATCGAAACCAGTGAGACTAGT 58.920 43.478 0.00 0.00 0.00 2.57
1904 3681 4.156190 TGATCGAAACCAGTGAGACTAGTC 59.844 45.833 15.41 15.41 0.00 2.59
1905 3682 3.483421 TCGAAACCAGTGAGACTAGTCA 58.517 45.455 24.44 2.68 0.00 3.41
1906 3683 3.252701 TCGAAACCAGTGAGACTAGTCAC 59.747 47.826 24.44 18.60 46.22 3.67
1913 3690 3.963428 GTGAGACTAGTCACAATGGGT 57.037 47.619 22.31 0.63 45.34 4.51
1915 3692 5.000012 GTGAGACTAGTCACAATGGGTAG 58.000 47.826 22.31 0.00 45.34 3.18
1916 3693 4.463186 GTGAGACTAGTCACAATGGGTAGT 59.537 45.833 22.31 0.00 45.34 2.73
1917 3694 5.651139 GTGAGACTAGTCACAATGGGTAGTA 59.349 44.000 22.31 0.00 45.34 1.82
1918 3695 6.152323 GTGAGACTAGTCACAATGGGTAGTAA 59.848 42.308 22.31 0.00 45.34 2.24
1919 3696 6.152323 TGAGACTAGTCACAATGGGTAGTAAC 59.848 42.308 24.44 0.00 0.00 2.50
1920 3697 6.014647 AGACTAGTCACAATGGGTAGTAACA 58.985 40.000 24.44 0.00 0.00 2.41
1921 3698 6.668283 AGACTAGTCACAATGGGTAGTAACAT 59.332 38.462 24.44 0.00 0.00 2.71
1922 3699 7.837689 AGACTAGTCACAATGGGTAGTAACATA 59.162 37.037 24.44 0.00 0.00 2.29
1923 3700 8.008513 ACTAGTCACAATGGGTAGTAACATAG 57.991 38.462 0.00 0.00 0.00 2.23
1924 3701 7.837689 ACTAGTCACAATGGGTAGTAACATAGA 59.162 37.037 0.00 0.00 0.00 1.98
1925 3702 7.113658 AGTCACAATGGGTAGTAACATAGAG 57.886 40.000 0.00 0.00 0.00 2.43
1926 3703 6.668283 AGTCACAATGGGTAGTAACATAGAGT 59.332 38.462 0.00 0.00 0.00 3.24
1927 3704 7.837689 AGTCACAATGGGTAGTAACATAGAGTA 59.162 37.037 0.00 0.00 0.00 2.59
1928 3705 8.472413 GTCACAATGGGTAGTAACATAGAGTAA 58.528 37.037 0.00 0.00 0.00 2.24
1929 3706 9.209048 TCACAATGGGTAGTAACATAGAGTAAT 57.791 33.333 0.00 0.00 0.00 1.89
1969 3746 9.944376 TTTATTAGACTGTAGACTCATTTTGCT 57.056 29.630 0.00 0.00 0.00 3.91
1970 3747 9.944376 TTATTAGACTGTAGACTCATTTTGCTT 57.056 29.630 0.00 0.00 0.00 3.91
1971 3748 8.854614 ATTAGACTGTAGACTCATTTTGCTTT 57.145 30.769 0.00 0.00 0.00 3.51
1972 3749 6.551385 AGACTGTAGACTCATTTTGCTTTG 57.449 37.500 0.00 0.00 0.00 2.77
1973 3750 6.291377 AGACTGTAGACTCATTTTGCTTTGA 58.709 36.000 0.00 0.00 0.00 2.69
1974 3751 6.939163 AGACTGTAGACTCATTTTGCTTTGAT 59.061 34.615 0.00 0.00 0.00 2.57
1975 3752 8.097038 AGACTGTAGACTCATTTTGCTTTGATA 58.903 33.333 0.00 0.00 0.00 2.15
1976 3753 8.798859 ACTGTAGACTCATTTTGCTTTGATAT 57.201 30.769 0.00 0.00 0.00 1.63
1977 3754 8.671921 ACTGTAGACTCATTTTGCTTTGATATG 58.328 33.333 0.00 0.00 0.00 1.78
1978 3755 7.988737 TGTAGACTCATTTTGCTTTGATATGG 58.011 34.615 0.00 0.00 0.00 2.74
1979 3756 7.828717 TGTAGACTCATTTTGCTTTGATATGGA 59.171 33.333 0.00 0.00 0.00 3.41
1980 3757 7.330900 AGACTCATTTTGCTTTGATATGGAG 57.669 36.000 0.00 0.00 0.00 3.86
1981 3758 6.888632 AGACTCATTTTGCTTTGATATGGAGT 59.111 34.615 0.00 0.00 0.00 3.85
1982 3759 8.049117 AGACTCATTTTGCTTTGATATGGAGTA 58.951 33.333 0.00 0.00 0.00 2.59
1983 3760 8.218338 ACTCATTTTGCTTTGATATGGAGTAG 57.782 34.615 0.00 0.00 0.00 2.57
1984 3761 7.831193 ACTCATTTTGCTTTGATATGGAGTAGT 59.169 33.333 0.00 0.00 0.00 2.73
1985 3762 9.330063 CTCATTTTGCTTTGATATGGAGTAGTA 57.670 33.333 0.00 0.00 0.00 1.82
1986 3763 9.330063 TCATTTTGCTTTGATATGGAGTAGTAG 57.670 33.333 0.00 0.00 0.00 2.57
1987 3764 9.113838 CATTTTGCTTTGATATGGAGTAGTAGT 57.886 33.333 0.00 0.00 0.00 2.73
1997 3774 9.871175 TGATATGGAGTAGTAGTAATTACCACA 57.129 33.333 15.19 3.73 32.37 4.17
2000 3777 6.812998 TGGAGTAGTAGTAATTACCACATGC 58.187 40.000 15.19 7.49 32.37 4.06
2001 3778 6.183360 TGGAGTAGTAGTAATTACCACATGCC 60.183 42.308 15.19 10.95 32.37 4.40
2002 3779 6.041751 GGAGTAGTAGTAATTACCACATGCCT 59.958 42.308 15.19 5.98 32.37 4.75
2003 3780 7.418712 GGAGTAGTAGTAATTACCACATGCCTT 60.419 40.741 15.19 0.00 32.37 4.35
2004 3781 7.858498 AGTAGTAGTAATTACCACATGCCTTT 58.142 34.615 15.19 0.00 32.37 3.11
2005 3782 7.985752 AGTAGTAGTAATTACCACATGCCTTTC 59.014 37.037 15.19 0.00 32.37 2.62
2006 3783 6.958767 AGTAGTAATTACCACATGCCTTTCT 58.041 36.000 15.19 0.00 32.37 2.52
2007 3784 7.402862 AGTAGTAATTACCACATGCCTTTCTT 58.597 34.615 15.19 0.00 32.37 2.52
2008 3785 7.888546 AGTAGTAATTACCACATGCCTTTCTTT 59.111 33.333 15.19 0.00 32.37 2.52
2009 3786 7.158099 AGTAATTACCACATGCCTTTCTTTC 57.842 36.000 12.05 0.00 0.00 2.62
2010 3787 6.948309 AGTAATTACCACATGCCTTTCTTTCT 59.052 34.615 12.05 0.00 0.00 2.52
2011 3788 6.670695 AATTACCACATGCCTTTCTTTCTT 57.329 33.333 0.00 0.00 0.00 2.52
2012 3789 5.705609 TTACCACATGCCTTTCTTTCTTC 57.294 39.130 0.00 0.00 0.00 2.87
2013 3790 3.565307 ACCACATGCCTTTCTTTCTTCA 58.435 40.909 0.00 0.00 0.00 3.02
2014 3791 4.154942 ACCACATGCCTTTCTTTCTTCAT 58.845 39.130 0.00 0.00 0.00 2.57
2015 3792 4.590222 ACCACATGCCTTTCTTTCTTCATT 59.410 37.500 0.00 0.00 0.00 2.57
2016 3793 5.070847 ACCACATGCCTTTCTTTCTTCATTT 59.929 36.000 0.00 0.00 0.00 2.32
2017 3794 6.267471 ACCACATGCCTTTCTTTCTTCATTTA 59.733 34.615 0.00 0.00 0.00 1.40
2018 3795 7.038799 ACCACATGCCTTTCTTTCTTCATTTAT 60.039 33.333 0.00 0.00 0.00 1.40
2019 3796 7.820872 CCACATGCCTTTCTTTCTTCATTTATT 59.179 33.333 0.00 0.00 0.00 1.40
2020 3797 9.859427 CACATGCCTTTCTTTCTTCATTTATTA 57.141 29.630 0.00 0.00 0.00 0.98
2021 3798 9.860898 ACATGCCTTTCTTTCTTCATTTATTAC 57.139 29.630 0.00 0.00 0.00 1.89
2024 3801 9.912634 TGCCTTTCTTTCTTCATTTATTACTTG 57.087 29.630 0.00 0.00 0.00 3.16
2025 3802 9.914131 GCCTTTCTTTCTTCATTTATTACTTGT 57.086 29.630 0.00 0.00 0.00 3.16
2083 3860 9.529823 TGTTACTATCTATATTACTCCCCACTG 57.470 37.037 0.00 0.00 0.00 3.66
2084 3861 9.531158 GTTACTATCTATATTACTCCCCACTGT 57.469 37.037 0.00 0.00 0.00 3.55
2085 3862 9.529823 TTACTATCTATATTACTCCCCACTGTG 57.470 37.037 0.00 0.00 0.00 3.66
2086 3863 7.766628 ACTATCTATATTACTCCCCACTGTGA 58.233 38.462 9.86 0.00 0.00 3.58
2087 3864 7.891183 ACTATCTATATTACTCCCCACTGTGAG 59.109 40.741 9.86 1.17 34.73 3.51
2088 3865 6.027025 TCTATATTACTCCCCACTGTGAGT 57.973 41.667 9.86 7.58 43.85 3.41
2089 3866 7.157947 TCTATATTACTCCCCACTGTGAGTA 57.842 40.000 9.86 6.56 41.80 2.59
2090 3867 7.232188 TCTATATTACTCCCCACTGTGAGTAG 58.768 42.308 9.86 5.62 43.04 2.57
2091 3868 3.537795 TTACTCCCCACTGTGAGTAGT 57.462 47.619 9.86 10.99 43.04 2.73
2092 3869 1.926108 ACTCCCCACTGTGAGTAGTC 58.074 55.000 9.86 0.00 39.96 2.59
2093 3870 1.429687 ACTCCCCACTGTGAGTAGTCT 59.570 52.381 9.86 0.00 39.96 3.24
2094 3871 1.821753 CTCCCCACTGTGAGTAGTCTG 59.178 57.143 9.86 0.00 0.00 3.51
2095 3872 1.427753 TCCCCACTGTGAGTAGTCTGA 59.572 52.381 9.86 0.00 0.00 3.27
2096 3873 1.821753 CCCCACTGTGAGTAGTCTGAG 59.178 57.143 9.86 0.00 0.00 3.35
2100 3877 0.179150 CTGTGAGTAGTCTGAGCGGC 60.179 60.000 0.00 0.00 0.00 6.53
2101 3878 1.139947 GTGAGTAGTCTGAGCGGCC 59.860 63.158 0.00 0.00 0.00 6.13
2200 3979 2.079158 CCGATGCTGTCATTGTCAACT 58.921 47.619 0.00 0.00 33.15 3.16
2230 4009 4.209288 GCTGCTATACGTGTTGGATTACAG 59.791 45.833 0.00 0.00 0.00 2.74
2235 4014 2.356135 ACGTGTTGGATTACAGCATCC 58.644 47.619 0.00 0.00 42.44 3.51
2262 4041 3.766591 AGGAGTGCGATATTATCCTGGAG 59.233 47.826 1.52 0.00 38.95 3.86
2304 5628 7.822658 TGGTTGTTAAGGCAGTATTATTTGTC 58.177 34.615 0.00 0.00 0.00 3.18
2305 5629 6.964934 GGTTGTTAAGGCAGTATTATTTGTCG 59.035 38.462 0.00 0.00 0.00 4.35
2334 5661 5.895636 TTGTATTAAGTCAGTGGCAATGG 57.104 39.130 15.62 0.00 0.00 3.16
2358 5685 5.988561 GGAATCTTAATCTCGCTGAACAGAT 59.011 40.000 5.97 0.00 0.00 2.90
2363 5690 8.622948 TCTTAATCTCGCTGAACAGATATCTA 57.377 34.615 4.54 0.00 0.00 1.98
2502 5871 2.906389 ACTCAACCACTGCTCCAATAGA 59.094 45.455 0.00 0.00 0.00 1.98
2511 5880 3.762288 ACTGCTCCAATAGAACTCGTACA 59.238 43.478 0.00 0.00 0.00 2.90
2604 5989 1.377725 CGAAATGGTCCAGGCAGCT 60.378 57.895 0.00 0.00 0.00 4.24
2605 5990 1.651240 CGAAATGGTCCAGGCAGCTG 61.651 60.000 10.11 10.11 0.00 4.24
2606 5991 0.322816 GAAATGGTCCAGGCAGCTGA 60.323 55.000 20.43 0.00 0.00 4.26
2607 5992 0.323178 AAATGGTCCAGGCAGCTGAG 60.323 55.000 20.43 6.06 0.00 3.35
2608 5993 1.495579 AATGGTCCAGGCAGCTGAGT 61.496 55.000 20.43 0.00 0.00 3.41
2609 5994 2.046507 GGTCCAGGCAGCTGAGTG 60.047 66.667 20.43 13.32 0.00 3.51
2641 6036 4.777463 TCAAGCACCTAATAGTAAAGGCC 58.223 43.478 0.00 0.00 36.24 5.19
2675 6070 1.148157 GACGTGTGCAGGGATCGATG 61.148 60.000 0.54 0.00 0.00 3.84
2710 6108 2.534298 CTAGCTGATCACCACTTGTCG 58.466 52.381 0.00 0.00 0.00 4.35
2716 6120 5.050490 GCTGATCACCACTTGTCGTAATAT 58.950 41.667 0.00 0.00 0.00 1.28
2755 6245 0.179169 GCCAGTAGGTTCGTCGAGAC 60.179 60.000 0.00 0.00 37.19 3.36
2758 6248 2.608546 CCAGTAGGTTCGTCGAGACTAG 59.391 54.545 7.87 0.00 0.00 2.57
2785 6275 1.340211 ACAGGCAGACGTCTACTAGCT 60.340 52.381 19.57 2.30 0.00 3.32
2808 7023 1.490574 AGTAGGAGGAGGCATGTGTC 58.509 55.000 0.00 0.00 0.00 3.67
3085 8623 4.735132 CATGGCACCGACGACCGT 62.735 66.667 0.00 0.00 36.31 4.83
3130 8668 3.712907 GACAAGGCTGGCCGGGTA 61.713 66.667 15.02 0.00 41.95 3.69
3201 8739 2.476051 CAACATCACCACGCTCGC 59.524 61.111 0.00 0.00 0.00 5.03
3385 8923 1.949799 AGAACCTGGAGCTCAGTGAT 58.050 50.000 17.19 0.00 41.83 3.06
3834 9412 8.755696 TGATACTTCAATTGGTGTATTTTTGC 57.244 30.769 18.36 10.44 0.00 3.68
3838 9416 7.151976 ACTTCAATTGGTGTATTTTTGCTACC 58.848 34.615 5.42 0.00 0.00 3.18
3939 9518 6.590292 GGAGTAACATCGACATCTCAAAGAAA 59.410 38.462 0.00 0.00 0.00 2.52
3940 9519 7.201478 GGAGTAACATCGACATCTCAAAGAAAG 60.201 40.741 0.00 0.00 0.00 2.62
3941 9520 5.869753 AACATCGACATCTCAAAGAAAGG 57.130 39.130 0.00 0.00 0.00 3.11
3959 9538 8.611654 AAGAAAGGAAACAATTTCAATCCATG 57.388 30.769 3.87 0.00 41.43 3.66
4045 9625 5.839262 TGATAAAGTCGTAGCAGTTTGTG 57.161 39.130 0.00 0.00 0.00 3.33
4254 9857 2.912956 TGGTTATTGAGGCTTGGACTCT 59.087 45.455 1.98 0.00 38.75 3.24
4419 10022 7.429633 AGAAGATAGGAGTATGTTGTCAATCG 58.570 38.462 0.00 0.00 0.00 3.34
4443 10046 7.499895 TCGGGGTAATAAGTGGAATGAAAATAC 59.500 37.037 0.00 0.00 0.00 1.89
4531 10147 5.121768 CCGTGGTTGAAAAGATAAGTGGTAG 59.878 44.000 0.00 0.00 0.00 3.18
4532 10148 5.929992 CGTGGTTGAAAAGATAAGTGGTAGA 59.070 40.000 0.00 0.00 0.00 2.59
4610 10228 8.202137 AGTTGTTTTGCTACTTACTAAGTGAGA 58.798 33.333 11.17 0.00 42.84 3.27
4637 10255 6.840780 AATAAAATGCACTCTTACTTGCCT 57.159 33.333 0.00 0.00 38.00 4.75
4639 10257 3.423539 AATGCACTCTTACTTGCCTCA 57.576 42.857 0.00 0.00 38.00 3.86
4648 10266 5.248477 ACTCTTACTTGCCTCAGACCAAATA 59.752 40.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.340814 AAATCGACAGCTCAATGGAGT 57.659 42.857 0.00 0.00 43.37 3.85
3 4 3.432186 CCCTAAATCGACAGCTCAATGGA 60.432 47.826 0.00 0.00 0.00 3.41
5 6 2.289002 GCCCTAAATCGACAGCTCAATG 59.711 50.000 0.00 0.00 0.00 2.82
6 7 2.565841 GCCCTAAATCGACAGCTCAAT 58.434 47.619 0.00 0.00 0.00 2.57
7 8 1.406887 GGCCCTAAATCGACAGCTCAA 60.407 52.381 0.00 0.00 0.00 3.02
8 9 0.178068 GGCCCTAAATCGACAGCTCA 59.822 55.000 0.00 0.00 0.00 4.26
9 10 0.466124 AGGCCCTAAATCGACAGCTC 59.534 55.000 0.00 0.00 0.00 4.09
10 11 0.466124 GAGGCCCTAAATCGACAGCT 59.534 55.000 0.00 0.00 0.00 4.24
11 12 0.466124 AGAGGCCCTAAATCGACAGC 59.534 55.000 0.00 0.00 0.00 4.40
12 13 2.939103 CAAAGAGGCCCTAAATCGACAG 59.061 50.000 0.00 0.00 0.00 3.51
13 14 2.569853 TCAAAGAGGCCCTAAATCGACA 59.430 45.455 0.00 0.00 0.00 4.35
14 15 3.261981 TCAAAGAGGCCCTAAATCGAC 57.738 47.619 0.00 0.00 0.00 4.20
15 16 4.451900 GAATCAAAGAGGCCCTAAATCGA 58.548 43.478 0.00 0.00 0.00 3.59
16 17 3.248602 CGAATCAAAGAGGCCCTAAATCG 59.751 47.826 0.00 0.00 0.00 3.34
17 18 4.200092 ACGAATCAAAGAGGCCCTAAATC 58.800 43.478 0.00 0.00 0.00 2.17
18 19 4.236527 ACGAATCAAAGAGGCCCTAAAT 57.763 40.909 0.00 0.00 0.00 1.40
19 20 3.713826 ACGAATCAAAGAGGCCCTAAA 57.286 42.857 0.00 0.00 0.00 1.85
20 21 3.134081 CCTACGAATCAAAGAGGCCCTAA 59.866 47.826 0.00 0.00 0.00 2.69
21 22 2.698797 CCTACGAATCAAAGAGGCCCTA 59.301 50.000 0.00 0.00 0.00 3.53
22 23 1.486726 CCTACGAATCAAAGAGGCCCT 59.513 52.381 0.00 0.00 0.00 5.19
23 24 1.485066 TCCTACGAATCAAAGAGGCCC 59.515 52.381 0.00 0.00 0.00 5.80
24 25 2.981859 TCCTACGAATCAAAGAGGCC 57.018 50.000 0.00 0.00 0.00 5.19
25 26 5.354234 TCAAAATCCTACGAATCAAAGAGGC 59.646 40.000 0.00 0.00 0.00 4.70
26 27 6.985188 TCAAAATCCTACGAATCAAAGAGG 57.015 37.500 0.00 0.00 0.00 3.69
27 28 9.118236 GTTTTCAAAATCCTACGAATCAAAGAG 57.882 33.333 0.00 0.00 0.00 2.85
28 29 8.625651 TGTTTTCAAAATCCTACGAATCAAAGA 58.374 29.630 0.00 0.00 0.00 2.52
29 30 8.690840 GTGTTTTCAAAATCCTACGAATCAAAG 58.309 33.333 0.00 0.00 0.00 2.77
30 31 8.191446 TGTGTTTTCAAAATCCTACGAATCAAA 58.809 29.630 0.00 0.00 0.00 2.69
31 32 7.708051 TGTGTTTTCAAAATCCTACGAATCAA 58.292 30.769 0.00 0.00 0.00 2.57
32 33 7.265647 TGTGTTTTCAAAATCCTACGAATCA 57.734 32.000 0.00 0.00 0.00 2.57
33 34 6.801862 CCTGTGTTTTCAAAATCCTACGAATC 59.198 38.462 0.00 0.00 0.00 2.52
34 35 6.488683 TCCTGTGTTTTCAAAATCCTACGAAT 59.511 34.615 0.00 0.00 0.00 3.34
35 36 5.823570 TCCTGTGTTTTCAAAATCCTACGAA 59.176 36.000 0.00 0.00 0.00 3.85
36 37 5.369833 TCCTGTGTTTTCAAAATCCTACGA 58.630 37.500 0.00 0.00 0.00 3.43
37 38 5.682943 TCCTGTGTTTTCAAAATCCTACG 57.317 39.130 0.00 0.00 0.00 3.51
38 39 8.244113 CCTATTCCTGTGTTTTCAAAATCCTAC 58.756 37.037 0.00 0.00 0.00 3.18
39 40 8.167392 TCCTATTCCTGTGTTTTCAAAATCCTA 58.833 33.333 0.00 0.00 0.00 2.94
40 41 7.010160 TCCTATTCCTGTGTTTTCAAAATCCT 58.990 34.615 0.00 0.00 0.00 3.24
41 42 7.227049 TCCTATTCCTGTGTTTTCAAAATCC 57.773 36.000 0.00 0.00 0.00 3.01
42 43 9.541143 TTTTCCTATTCCTGTGTTTTCAAAATC 57.459 29.630 0.00 0.00 0.00 2.17
43 44 9.546428 CTTTTCCTATTCCTGTGTTTTCAAAAT 57.454 29.630 0.00 0.00 0.00 1.82
44 45 8.536175 ACTTTTCCTATTCCTGTGTTTTCAAAA 58.464 29.630 0.00 0.00 0.00 2.44
45 46 8.073467 ACTTTTCCTATTCCTGTGTTTTCAAA 57.927 30.769 0.00 0.00 0.00 2.69
46 47 7.654022 ACTTTTCCTATTCCTGTGTTTTCAA 57.346 32.000 0.00 0.00 0.00 2.69
47 48 8.934023 ATACTTTTCCTATTCCTGTGTTTTCA 57.066 30.769 0.00 0.00 0.00 2.69
54 55 9.853177 CCAATCTTATACTTTTCCTATTCCTGT 57.147 33.333 0.00 0.00 0.00 4.00
59 60 9.853177 CCACTCCAATCTTATACTTTTCCTATT 57.147 33.333 0.00 0.00 0.00 1.73
60 61 7.939588 GCCACTCCAATCTTATACTTTTCCTAT 59.060 37.037 0.00 0.00 0.00 2.57
61 62 7.092623 TGCCACTCCAATCTTATACTTTTCCTA 60.093 37.037 0.00 0.00 0.00 2.94
62 63 6.122964 GCCACTCCAATCTTATACTTTTCCT 58.877 40.000 0.00 0.00 0.00 3.36
63 64 5.885912 TGCCACTCCAATCTTATACTTTTCC 59.114 40.000 0.00 0.00 0.00 3.13
64 65 7.067494 ACATGCCACTCCAATCTTATACTTTTC 59.933 37.037 0.00 0.00 0.00 2.29
65 66 6.891908 ACATGCCACTCCAATCTTATACTTTT 59.108 34.615 0.00 0.00 0.00 2.27
66 67 6.426587 ACATGCCACTCCAATCTTATACTTT 58.573 36.000 0.00 0.00 0.00 2.66
67 68 6.006275 ACATGCCACTCCAATCTTATACTT 57.994 37.500 0.00 0.00 0.00 2.24
68 69 5.455326 GGACATGCCACTCCAATCTTATACT 60.455 44.000 0.00 0.00 36.34 2.12
69 70 4.757149 GGACATGCCACTCCAATCTTATAC 59.243 45.833 0.00 0.00 36.34 1.47
70 71 4.411869 TGGACATGCCACTCCAATCTTATA 59.588 41.667 4.93 0.00 43.33 0.98
71 72 3.202818 TGGACATGCCACTCCAATCTTAT 59.797 43.478 4.93 0.00 43.33 1.73
72 73 2.575735 TGGACATGCCACTCCAATCTTA 59.424 45.455 4.93 0.00 43.33 2.10
73 74 1.355381 TGGACATGCCACTCCAATCTT 59.645 47.619 4.93 0.00 43.33 2.40
74 75 0.994247 TGGACATGCCACTCCAATCT 59.006 50.000 4.93 0.00 43.33 2.40
75 76 3.575506 TGGACATGCCACTCCAATC 57.424 52.632 4.93 0.00 43.33 2.67
83 84 1.355381 AGGATTCAAGTGGACATGCCA 59.645 47.619 4.93 4.93 46.96 4.92
84 85 2.134789 AGGATTCAAGTGGACATGCC 57.865 50.000 0.00 0.00 37.10 4.40
85 86 4.999950 CCTATAGGATTCAAGTGGACATGC 59.000 45.833 14.11 0.00 37.39 4.06
86 87 6.425210 TCCTATAGGATTCAAGTGGACATG 57.575 41.667 18.00 0.00 39.78 3.21
101 102 5.480642 ACACTCATTGCTGATCCTATAGG 57.519 43.478 13.07 13.07 0.00 2.57
102 103 6.988580 TCAAACACTCATTGCTGATCCTATAG 59.011 38.462 0.00 0.00 0.00 1.31
103 104 6.888105 TCAAACACTCATTGCTGATCCTATA 58.112 36.000 0.00 0.00 0.00 1.31
104 105 5.748402 TCAAACACTCATTGCTGATCCTAT 58.252 37.500 0.00 0.00 0.00 2.57
105 106 5.164620 TCAAACACTCATTGCTGATCCTA 57.835 39.130 0.00 0.00 0.00 2.94
106 107 4.025040 TCAAACACTCATTGCTGATCCT 57.975 40.909 0.00 0.00 0.00 3.24
107 108 4.669318 CATCAAACACTCATTGCTGATCC 58.331 43.478 0.00 0.00 31.57 3.36
108 109 4.103357 GCATCAAACACTCATTGCTGATC 58.897 43.478 0.00 0.00 31.57 2.92
109 110 3.119245 GGCATCAAACACTCATTGCTGAT 60.119 43.478 0.00 0.00 33.33 2.90
110 111 2.229543 GGCATCAAACACTCATTGCTGA 59.770 45.455 0.00 0.00 0.00 4.26
111 112 2.029739 TGGCATCAAACACTCATTGCTG 60.030 45.455 0.00 0.00 0.00 4.41
112 113 2.029649 GTGGCATCAAACACTCATTGCT 60.030 45.455 0.00 0.00 34.84 3.91
113 114 2.288334 TGTGGCATCAAACACTCATTGC 60.288 45.455 0.00 0.00 38.39 3.56
114 115 3.253921 TCTGTGGCATCAAACACTCATTG 59.746 43.478 0.00 0.00 38.39 2.82
115 116 3.489355 TCTGTGGCATCAAACACTCATT 58.511 40.909 0.00 0.00 38.39 2.57
116 117 3.144657 TCTGTGGCATCAAACACTCAT 57.855 42.857 0.00 0.00 38.39 2.90
117 118 2.636647 TCTGTGGCATCAAACACTCA 57.363 45.000 0.00 0.00 38.39 3.41
118 119 3.988379 TTTCTGTGGCATCAAACACTC 57.012 42.857 0.00 0.00 38.39 3.51
119 120 4.734398 TTTTTCTGTGGCATCAAACACT 57.266 36.364 0.00 0.00 38.39 3.55
120 121 7.475771 TTTATTTTTCTGTGGCATCAAACAC 57.524 32.000 0.00 0.00 38.08 3.32
121 122 8.498054 TTTTTATTTTTCTGTGGCATCAAACA 57.502 26.923 0.00 0.00 0.00 2.83
144 145 7.225734 CCATTTCGACCACCTTTTACAATTTTT 59.774 33.333 0.00 0.00 0.00 1.94
145 146 6.704050 CCATTTCGACCACCTTTTACAATTTT 59.296 34.615 0.00 0.00 0.00 1.82
146 147 6.041069 TCCATTTCGACCACCTTTTACAATTT 59.959 34.615 0.00 0.00 0.00 1.82
147 148 5.536916 TCCATTTCGACCACCTTTTACAATT 59.463 36.000 0.00 0.00 0.00 2.32
148 149 5.074115 TCCATTTCGACCACCTTTTACAAT 58.926 37.500 0.00 0.00 0.00 2.71
149 150 4.462133 TCCATTTCGACCACCTTTTACAA 58.538 39.130 0.00 0.00 0.00 2.41
150 151 4.088056 TCCATTTCGACCACCTTTTACA 57.912 40.909 0.00 0.00 0.00 2.41
151 152 4.457949 ACATCCATTTCGACCACCTTTTAC 59.542 41.667 0.00 0.00 0.00 2.01
152 153 4.658063 ACATCCATTTCGACCACCTTTTA 58.342 39.130 0.00 0.00 0.00 1.52
153 154 3.496331 ACATCCATTTCGACCACCTTTT 58.504 40.909 0.00 0.00 0.00 2.27
154 155 3.154827 ACATCCATTTCGACCACCTTT 57.845 42.857 0.00 0.00 0.00 3.11
155 156 2.879103 ACATCCATTTCGACCACCTT 57.121 45.000 0.00 0.00 0.00 3.50
156 157 2.879103 AACATCCATTTCGACCACCT 57.121 45.000 0.00 0.00 0.00 4.00
157 158 3.869065 TCTAACATCCATTTCGACCACC 58.131 45.455 0.00 0.00 0.00 4.61
158 159 6.436843 AAATCTAACATCCATTTCGACCAC 57.563 37.500 0.00 0.00 0.00 4.16
159 160 8.746052 ATAAAATCTAACATCCATTTCGACCA 57.254 30.769 0.00 0.00 0.00 4.02
161 162 9.793245 CGTATAAAATCTAACATCCATTTCGAC 57.207 33.333 0.00 0.00 0.00 4.20
162 163 9.752961 TCGTATAAAATCTAACATCCATTTCGA 57.247 29.630 0.00 0.00 0.00 3.71
228 229 9.204337 TGGTCATTTGATTCATAAGATTGGATT 57.796 29.630 0.00 0.00 0.00 3.01
229 230 8.771521 TGGTCATTTGATTCATAAGATTGGAT 57.228 30.769 0.00 0.00 0.00 3.41
230 231 8.592529 TTGGTCATTTGATTCATAAGATTGGA 57.407 30.769 0.00 0.00 0.00 3.53
300 301 8.760569 GCTCCTTTGATTCAAACGAAAATTTTA 58.239 29.630 7.74 0.00 0.00 1.52
301 302 7.254761 GGCTCCTTTGATTCAAACGAAAATTTT 60.255 33.333 7.74 2.28 0.00 1.82
302 303 6.202762 GGCTCCTTTGATTCAAACGAAAATTT 59.797 34.615 7.74 0.00 0.00 1.82
303 304 5.696270 GGCTCCTTTGATTCAAACGAAAATT 59.304 36.000 7.74 0.00 0.00 1.82
304 305 5.230182 GGCTCCTTTGATTCAAACGAAAAT 58.770 37.500 7.74 0.00 0.00 1.82
305 306 4.500716 GGGCTCCTTTGATTCAAACGAAAA 60.501 41.667 7.74 0.00 0.00 2.29
306 307 3.005367 GGGCTCCTTTGATTCAAACGAAA 59.995 43.478 7.74 0.00 0.00 3.46
307 308 2.556622 GGGCTCCTTTGATTCAAACGAA 59.443 45.455 7.74 0.00 0.00 3.85
308 309 2.159382 GGGCTCCTTTGATTCAAACGA 58.841 47.619 7.74 8.77 0.00 3.85
309 310 2.162681 AGGGCTCCTTTGATTCAAACG 58.837 47.619 7.74 4.96 0.00 3.60
310 311 5.010282 TCTAAGGGCTCCTTTGATTCAAAC 58.990 41.667 7.74 0.00 41.69 2.93
311 312 5.255397 TCTAAGGGCTCCTTTGATTCAAA 57.745 39.130 11.19 11.19 41.69 2.69
312 313 4.927267 TCTAAGGGCTCCTTTGATTCAA 57.073 40.909 11.15 0.00 41.69 2.69
317 318 4.975147 TCCATAATCTAAGGGCTCCTTTGA 59.025 41.667 16.11 16.11 45.85 2.69
318 319 5.072329 TCTCCATAATCTAAGGGCTCCTTTG 59.928 44.000 11.15 9.67 41.69 2.77
319 320 5.227593 TCTCCATAATCTAAGGGCTCCTTT 58.772 41.667 11.15 0.00 41.69 3.11
320 321 4.832492 TCTCCATAATCTAAGGGCTCCTT 58.168 43.478 10.76 10.76 46.63 3.36
321 322 4.493819 TCTCCATAATCTAAGGGCTCCT 57.506 45.455 0.00 0.00 33.87 3.69
322 323 4.595350 AGTTCTCCATAATCTAAGGGCTCC 59.405 45.833 0.00 0.00 0.00 4.70
323 324 5.305644 TCAGTTCTCCATAATCTAAGGGCTC 59.694 44.000 0.00 0.00 0.00 4.70
324 325 5.219739 TCAGTTCTCCATAATCTAAGGGCT 58.780 41.667 0.00 0.00 0.00 5.19
325 326 5.552870 TCAGTTCTCCATAATCTAAGGGC 57.447 43.478 0.00 0.00 0.00 5.19
326 327 7.164803 GGATTCAGTTCTCCATAATCTAAGGG 58.835 42.308 0.00 0.00 0.00 3.95
327 328 7.739825 TGGATTCAGTTCTCCATAATCTAAGG 58.260 38.462 0.00 0.00 36.63 2.69
337 338 3.387962 AGCCTATGGATTCAGTTCTCCA 58.612 45.455 0.00 0.00 45.27 3.86
338 339 3.645687 AGAGCCTATGGATTCAGTTCTCC 59.354 47.826 0.00 0.00 0.00 3.71
339 340 4.953940 AGAGCCTATGGATTCAGTTCTC 57.046 45.455 0.00 0.00 0.00 2.87
340 341 5.279910 GCATAGAGCCTATGGATTCAGTTCT 60.280 44.000 18.22 0.00 37.23 3.01
341 342 4.934602 GCATAGAGCCTATGGATTCAGTTC 59.065 45.833 18.22 1.89 37.23 3.01
342 343 4.562347 CGCATAGAGCCTATGGATTCAGTT 60.562 45.833 18.22 0.00 41.38 3.16
343 344 3.056250 CGCATAGAGCCTATGGATTCAGT 60.056 47.826 18.22 0.00 41.38 3.41
344 345 3.194329 TCGCATAGAGCCTATGGATTCAG 59.806 47.826 18.22 4.88 41.38 3.02
345 346 3.165071 TCGCATAGAGCCTATGGATTCA 58.835 45.455 18.22 0.00 41.38 2.57
346 347 3.876274 TCGCATAGAGCCTATGGATTC 57.124 47.619 18.22 6.15 41.38 2.52
347 348 3.771479 TGATCGCATAGAGCCTATGGATT 59.229 43.478 18.22 8.42 41.38 3.01
348 349 3.369175 TGATCGCATAGAGCCTATGGAT 58.631 45.455 18.22 17.33 41.38 3.41
349 350 2.807676 TGATCGCATAGAGCCTATGGA 58.192 47.619 18.22 14.72 41.38 3.41
350 351 3.599730 TTGATCGCATAGAGCCTATGG 57.400 47.619 18.22 11.42 41.38 2.74
351 352 4.993584 ACTTTTGATCGCATAGAGCCTATG 59.006 41.667 14.45 14.45 41.38 2.23
352 353 4.993584 CACTTTTGATCGCATAGAGCCTAT 59.006 41.667 0.00 0.00 41.38 2.57
353 354 4.099419 TCACTTTTGATCGCATAGAGCCTA 59.901 41.667 0.00 0.00 41.38 3.93
354 355 3.118629 TCACTTTTGATCGCATAGAGCCT 60.119 43.478 0.00 0.00 41.38 4.58
355 356 3.198068 TCACTTTTGATCGCATAGAGCC 58.802 45.455 0.00 0.00 41.38 4.70
356 357 3.303001 GCTCACTTTTGATCGCATAGAGC 60.303 47.826 9.17 9.17 40.87 4.09
357 358 4.118410 AGCTCACTTTTGATCGCATAGAG 58.882 43.478 0.00 0.00 0.00 2.43
358 359 4.115516 GAGCTCACTTTTGATCGCATAGA 58.884 43.478 9.40 0.00 0.00 1.98
359 360 3.867493 TGAGCTCACTTTTGATCGCATAG 59.133 43.478 13.74 0.00 0.00 2.23
360 361 3.860641 TGAGCTCACTTTTGATCGCATA 58.139 40.909 13.74 0.00 0.00 3.14
361 362 2.676839 CTGAGCTCACTTTTGATCGCAT 59.323 45.455 13.74 0.00 28.96 4.73
362 363 2.071540 CTGAGCTCACTTTTGATCGCA 58.928 47.619 13.74 0.00 0.00 5.10
363 364 2.341257 TCTGAGCTCACTTTTGATCGC 58.659 47.619 13.74 0.00 0.00 4.58
364 365 3.555139 GGATCTGAGCTCACTTTTGATCG 59.445 47.826 25.00 10.78 32.12 3.69
365 366 4.768583 AGGATCTGAGCTCACTTTTGATC 58.231 43.478 24.46 24.46 0.00 2.92
366 367 4.383989 GGAGGATCTGAGCTCACTTTTGAT 60.384 45.833 13.74 13.63 33.73 2.57
367 368 3.055530 GGAGGATCTGAGCTCACTTTTGA 60.056 47.826 13.74 8.81 33.73 2.69
368 369 3.269178 GGAGGATCTGAGCTCACTTTTG 58.731 50.000 13.74 2.51 33.73 2.44
369 370 2.238395 GGGAGGATCTGAGCTCACTTTT 59.762 50.000 13.74 0.00 33.73 2.27
370 371 1.836802 GGGAGGATCTGAGCTCACTTT 59.163 52.381 13.74 0.00 33.73 2.66
371 372 1.494960 GGGAGGATCTGAGCTCACTT 58.505 55.000 13.74 2.37 33.73 3.16
372 373 0.398381 GGGGAGGATCTGAGCTCACT 60.398 60.000 13.74 8.45 33.73 3.41
373 374 1.743321 CGGGGAGGATCTGAGCTCAC 61.743 65.000 13.74 2.89 33.73 3.51
374 375 1.456518 CGGGGAGGATCTGAGCTCA 60.457 63.158 17.19 17.19 33.73 4.26
375 376 2.866726 GCGGGGAGGATCTGAGCTC 61.867 68.421 6.82 6.82 33.73 4.09
376 377 2.841988 GCGGGGAGGATCTGAGCT 60.842 66.667 0.00 0.00 33.73 4.09
377 378 2.257409 TTTGCGGGGAGGATCTGAGC 62.257 60.000 0.00 0.00 33.73 4.26
378 379 0.253044 TTTTGCGGGGAGGATCTGAG 59.747 55.000 0.00 0.00 33.73 3.35
379 380 0.695924 TTTTTGCGGGGAGGATCTGA 59.304 50.000 0.00 0.00 33.73 3.27
380 381 3.264574 TTTTTGCGGGGAGGATCTG 57.735 52.632 0.00 0.00 33.73 2.90
396 397 6.067350 AGGATCTGAGCTCACTTTTCTTTTT 58.933 36.000 13.74 0.00 0.00 1.94
397 398 5.629125 AGGATCTGAGCTCACTTTTCTTTT 58.371 37.500 13.74 0.00 0.00 2.27
398 399 5.240013 AGGATCTGAGCTCACTTTTCTTT 57.760 39.130 13.74 0.00 0.00 2.52
399 400 4.906747 AGGATCTGAGCTCACTTTTCTT 57.093 40.909 13.74 0.96 0.00 2.52
400 401 4.405358 CCTAGGATCTGAGCTCACTTTTCT 59.595 45.833 13.74 7.05 0.00 2.52
401 402 4.161377 ACCTAGGATCTGAGCTCACTTTTC 59.839 45.833 17.98 7.08 0.00 2.29
402 403 4.100373 ACCTAGGATCTGAGCTCACTTTT 58.900 43.478 17.98 0.26 0.00 2.27
403 404 3.704061 GACCTAGGATCTGAGCTCACTTT 59.296 47.826 17.98 0.00 0.00 2.66
404 405 3.295973 GACCTAGGATCTGAGCTCACTT 58.704 50.000 17.98 2.37 0.00 3.16
405 406 2.243478 TGACCTAGGATCTGAGCTCACT 59.757 50.000 17.98 11.09 0.00 3.41
406 407 2.660572 TGACCTAGGATCTGAGCTCAC 58.339 52.381 17.98 2.89 0.00 3.51
584 709 3.558608 TTTTGAGGGATGGTTGGGATT 57.441 42.857 0.00 0.00 0.00 3.01
585 710 3.558608 TTTTTGAGGGATGGTTGGGAT 57.441 42.857 0.00 0.00 0.00 3.85
938 1106 4.489795 CTAGCTTGCGTGCGTGCG 62.490 66.667 0.00 0.00 37.81 5.34
1365 1539 2.203437 AACACCCCGGCCTTGTTC 60.203 61.111 0.00 0.00 0.00 3.18
1512 1686 0.460284 CGCCGAACATAACAGCCTCT 60.460 55.000 0.00 0.00 0.00 3.69
1898 3675 6.869206 ATGTTACTACCCATTGTGACTAGT 57.131 37.500 0.00 0.00 0.00 2.57
1899 3676 8.234136 TCTATGTTACTACCCATTGTGACTAG 57.766 38.462 0.00 0.00 0.00 2.57
1900 3677 7.837689 ACTCTATGTTACTACCCATTGTGACTA 59.162 37.037 0.00 0.00 0.00 2.59
1901 3678 6.668283 ACTCTATGTTACTACCCATTGTGACT 59.332 38.462 0.00 0.00 0.00 3.41
1902 3679 6.875076 ACTCTATGTTACTACCCATTGTGAC 58.125 40.000 0.00 0.00 0.00 3.67
1903 3680 8.598202 TTACTCTATGTTACTACCCATTGTGA 57.402 34.615 0.00 0.00 0.00 3.58
1943 3720 9.944376 AGCAAAATGAGTCTACAGTCTAATAAA 57.056 29.630 0.00 0.00 0.00 1.40
1944 3721 9.944376 AAGCAAAATGAGTCTACAGTCTAATAA 57.056 29.630 0.00 0.00 0.00 1.40
1945 3722 9.944376 AAAGCAAAATGAGTCTACAGTCTAATA 57.056 29.630 0.00 0.00 0.00 0.98
1946 3723 8.725148 CAAAGCAAAATGAGTCTACAGTCTAAT 58.275 33.333 0.00 0.00 0.00 1.73
1947 3724 7.931407 TCAAAGCAAAATGAGTCTACAGTCTAA 59.069 33.333 0.00 0.00 0.00 2.10
1948 3725 7.441836 TCAAAGCAAAATGAGTCTACAGTCTA 58.558 34.615 0.00 0.00 0.00 2.59
1949 3726 6.291377 TCAAAGCAAAATGAGTCTACAGTCT 58.709 36.000 0.00 0.00 0.00 3.24
1950 3727 6.545504 TCAAAGCAAAATGAGTCTACAGTC 57.454 37.500 0.00 0.00 0.00 3.51
1951 3728 8.671921 CATATCAAAGCAAAATGAGTCTACAGT 58.328 33.333 0.00 0.00 0.00 3.55
1952 3729 8.127327 CCATATCAAAGCAAAATGAGTCTACAG 58.873 37.037 0.00 0.00 0.00 2.74
1953 3730 7.828717 TCCATATCAAAGCAAAATGAGTCTACA 59.171 33.333 0.00 0.00 0.00 2.74
1954 3731 8.213518 TCCATATCAAAGCAAAATGAGTCTAC 57.786 34.615 0.00 0.00 0.00 2.59
1955 3732 8.049117 ACTCCATATCAAAGCAAAATGAGTCTA 58.951 33.333 0.00 0.00 0.00 2.59
1956 3733 6.888632 ACTCCATATCAAAGCAAAATGAGTCT 59.111 34.615 0.00 0.00 0.00 3.24
1957 3734 7.093322 ACTCCATATCAAAGCAAAATGAGTC 57.907 36.000 0.00 0.00 0.00 3.36
1958 3735 7.831193 ACTACTCCATATCAAAGCAAAATGAGT 59.169 33.333 0.00 0.00 0.00 3.41
1959 3736 8.218338 ACTACTCCATATCAAAGCAAAATGAG 57.782 34.615 0.00 0.00 0.00 2.90
1960 3737 9.330063 CTACTACTCCATATCAAAGCAAAATGA 57.670 33.333 0.00 0.00 0.00 2.57
1961 3738 9.113838 ACTACTACTCCATATCAAAGCAAAATG 57.886 33.333 0.00 0.00 0.00 2.32
1971 3748 9.871175 TGTGGTAATTACTACTACTCCATATCA 57.129 33.333 26.37 5.35 41.39 2.15
1974 3751 8.582437 GCATGTGGTAATTACTACTACTCCATA 58.418 37.037 26.37 9.51 41.39 2.74
1975 3752 7.442656 GCATGTGGTAATTACTACTACTCCAT 58.557 38.462 26.37 12.30 41.39 3.41
1976 3753 6.183360 GGCATGTGGTAATTACTACTACTCCA 60.183 42.308 26.37 10.78 41.39 3.86
1977 3754 6.041751 AGGCATGTGGTAATTACTACTACTCC 59.958 42.308 26.37 21.08 41.39 3.85
1978 3755 7.052142 AGGCATGTGGTAATTACTACTACTC 57.948 40.000 26.37 16.11 41.39 2.59
1979 3756 7.433537 AAGGCATGTGGTAATTACTACTACT 57.566 36.000 26.37 17.62 41.39 2.57
1980 3757 7.985752 AGAAAGGCATGTGGTAATTACTACTAC 59.014 37.037 26.37 17.42 41.24 2.73
1981 3758 8.086143 AGAAAGGCATGTGGTAATTACTACTA 57.914 34.615 26.37 16.28 38.35 1.82
1982 3759 6.958767 AGAAAGGCATGTGGTAATTACTACT 58.041 36.000 26.37 13.46 38.35 2.57
1983 3760 7.625828 AAGAAAGGCATGTGGTAATTACTAC 57.374 36.000 21.55 21.55 38.06 2.73
1984 3761 8.107095 AGAAAGAAAGGCATGTGGTAATTACTA 58.893 33.333 15.05 6.57 0.00 1.82
1985 3762 6.948309 AGAAAGAAAGGCATGTGGTAATTACT 59.052 34.615 15.05 0.00 0.00 2.24
1986 3763 7.158099 AGAAAGAAAGGCATGTGGTAATTAC 57.842 36.000 7.09 7.09 0.00 1.89
1987 3764 7.450014 TGAAGAAAGAAAGGCATGTGGTAATTA 59.550 33.333 0.00 0.00 0.00 1.40
1988 3765 6.267471 TGAAGAAAGAAAGGCATGTGGTAATT 59.733 34.615 0.00 0.00 0.00 1.40
1989 3766 5.774690 TGAAGAAAGAAAGGCATGTGGTAAT 59.225 36.000 0.00 0.00 0.00 1.89
1990 3767 5.136828 TGAAGAAAGAAAGGCATGTGGTAA 58.863 37.500 0.00 0.00 0.00 2.85
1991 3768 4.724399 TGAAGAAAGAAAGGCATGTGGTA 58.276 39.130 0.00 0.00 0.00 3.25
1992 3769 3.565307 TGAAGAAAGAAAGGCATGTGGT 58.435 40.909 0.00 0.00 0.00 4.16
1993 3770 4.796038 ATGAAGAAAGAAAGGCATGTGG 57.204 40.909 0.00 0.00 0.00 4.17
1994 3771 8.767478 AATAAATGAAGAAAGAAAGGCATGTG 57.233 30.769 0.00 0.00 0.00 3.21
1995 3772 9.860898 GTAATAAATGAAGAAAGAAAGGCATGT 57.139 29.630 0.00 0.00 0.00 3.21
1998 3775 9.912634 CAAGTAATAAATGAAGAAAGAAAGGCA 57.087 29.630 0.00 0.00 0.00 4.75
1999 3776 9.914131 ACAAGTAATAAATGAAGAAAGAAAGGC 57.086 29.630 0.00 0.00 0.00 4.35
2057 3834 9.529823 CAGTGGGGAGTAATATAGATAGTAACA 57.470 37.037 0.00 0.00 0.00 2.41
2058 3835 9.531158 ACAGTGGGGAGTAATATAGATAGTAAC 57.469 37.037 0.00 0.00 0.00 2.50
2059 3836 9.529823 CACAGTGGGGAGTAATATAGATAGTAA 57.470 37.037 0.00 0.00 0.00 2.24
2060 3837 8.897692 TCACAGTGGGGAGTAATATAGATAGTA 58.102 37.037 0.00 0.00 0.00 1.82
2061 3838 7.766628 TCACAGTGGGGAGTAATATAGATAGT 58.233 38.462 0.00 0.00 0.00 2.12
2062 3839 7.891183 ACTCACAGTGGGGAGTAATATAGATAG 59.109 40.741 15.60 0.00 42.30 2.08
2063 3840 7.766628 ACTCACAGTGGGGAGTAATATAGATA 58.233 38.462 15.60 0.00 42.30 1.98
2064 3841 6.625267 ACTCACAGTGGGGAGTAATATAGAT 58.375 40.000 15.60 0.00 42.30 1.98
2065 3842 6.027025 ACTCACAGTGGGGAGTAATATAGA 57.973 41.667 15.60 0.00 42.30 1.98
2066 3843 7.005296 ACTACTCACAGTGGGGAGTAATATAG 58.995 42.308 17.69 15.29 43.77 1.31
2067 3844 6.919158 ACTACTCACAGTGGGGAGTAATATA 58.081 40.000 17.69 7.17 43.77 0.86
2068 3845 5.778542 ACTACTCACAGTGGGGAGTAATAT 58.221 41.667 17.69 0.00 43.77 1.28
2069 3846 5.044328 AGACTACTCACAGTGGGGAGTAATA 60.044 44.000 19.20 7.70 43.77 0.98
2070 3847 4.024670 GACTACTCACAGTGGGGAGTAAT 58.975 47.826 19.20 14.70 43.77 1.89
2071 3848 3.075582 AGACTACTCACAGTGGGGAGTAA 59.924 47.826 19.20 10.15 43.77 2.24
2072 3849 2.648304 AGACTACTCACAGTGGGGAGTA 59.352 50.000 19.20 19.62 42.30 2.59
2073 3850 1.429687 AGACTACTCACAGTGGGGAGT 59.570 52.381 19.26 19.26 45.72 3.85
2074 3851 1.821753 CAGACTACTCACAGTGGGGAG 59.178 57.143 11.64 11.64 37.18 4.30
2075 3852 1.427753 TCAGACTACTCACAGTGGGGA 59.572 52.381 5.13 0.00 30.19 4.81
2076 3853 1.821753 CTCAGACTACTCACAGTGGGG 59.178 57.143 5.13 0.00 30.19 4.96
2077 3854 1.203523 GCTCAGACTACTCACAGTGGG 59.796 57.143 0.00 0.00 30.19 4.61
2078 3855 1.135546 CGCTCAGACTACTCACAGTGG 60.136 57.143 0.00 0.00 32.47 4.00
2079 3856 1.135546 CCGCTCAGACTACTCACAGTG 60.136 57.143 0.00 0.00 0.00 3.66
2080 3857 1.169577 CCGCTCAGACTACTCACAGT 58.830 55.000 0.00 0.00 0.00 3.55
2081 3858 0.179150 GCCGCTCAGACTACTCACAG 60.179 60.000 0.00 0.00 0.00 3.66
2082 3859 1.595993 GGCCGCTCAGACTACTCACA 61.596 60.000 0.00 0.00 0.00 3.58
2083 3860 1.139947 GGCCGCTCAGACTACTCAC 59.860 63.158 0.00 0.00 0.00 3.51
2084 3861 2.407428 CGGCCGCTCAGACTACTCA 61.407 63.158 14.67 0.00 0.00 3.41
2085 3862 2.054140 CTCGGCCGCTCAGACTACTC 62.054 65.000 23.51 0.00 0.00 2.59
2086 3863 2.045242 TCGGCCGCTCAGACTACT 60.045 61.111 23.51 0.00 0.00 2.57
2087 3864 1.654954 TTCTCGGCCGCTCAGACTAC 61.655 60.000 23.51 0.00 0.00 2.73
2088 3865 1.377366 CTTCTCGGCCGCTCAGACTA 61.377 60.000 23.51 3.30 0.00 2.59
2089 3866 2.676822 TTCTCGGCCGCTCAGACT 60.677 61.111 23.51 0.00 0.00 3.24
2090 3867 2.202676 CTTCTCGGCCGCTCAGAC 60.203 66.667 23.51 0.00 0.00 3.51
2091 3868 3.452786 CCTTCTCGGCCGCTCAGA 61.453 66.667 23.51 16.32 0.00 3.27
2092 3869 4.521062 CCCTTCTCGGCCGCTCAG 62.521 72.222 23.51 13.82 0.00 3.35
2094 3871 3.310860 TTTCCCTTCTCGGCCGCTC 62.311 63.158 23.51 0.00 0.00 5.03
2095 3872 3.316573 CTTTCCCTTCTCGGCCGCT 62.317 63.158 23.51 0.00 0.00 5.52
2096 3873 2.820037 CTTTCCCTTCTCGGCCGC 60.820 66.667 23.51 0.00 0.00 6.53
2100 3877 1.897560 AGTTTGCTTTCCCTTCTCGG 58.102 50.000 0.00 0.00 0.00 4.63
2101 3878 3.315191 TCAAAGTTTGCTTTCCCTTCTCG 59.685 43.478 10.90 0.00 42.54 4.04
2178 3956 1.441738 TGACAATGACAGCATCGGTG 58.558 50.000 0.00 0.00 37.06 4.94
2230 4009 2.512515 GCACTCCTCCGTGGATGC 60.513 66.667 10.65 10.65 45.16 3.91
2235 4014 3.502920 GATAATATCGCACTCCTCCGTG 58.497 50.000 0.00 0.00 37.94 4.94
2290 5220 8.447787 ACAATTGAAACGACAAATAATACTGC 57.552 30.769 13.59 0.00 33.44 4.40
2304 5628 6.523201 GCCACTGACTTAATACAATTGAAACG 59.477 38.462 13.59 0.00 0.00 3.60
2305 5629 7.367285 TGCCACTGACTTAATACAATTGAAAC 58.633 34.615 13.59 0.00 0.00 2.78
2334 5661 5.352284 TCTGTTCAGCGAGATTAAGATTCC 58.648 41.667 0.00 0.00 0.00 3.01
2511 5880 4.174009 CAGGTTTTCGATCAGTACGTCAT 58.826 43.478 0.00 0.00 0.00 3.06
2604 5989 2.288666 GCTTGAACCACTCAACACTCA 58.711 47.619 0.00 0.00 39.20 3.41
2605 5990 2.032178 GTGCTTGAACCACTCAACACTC 59.968 50.000 10.36 0.00 39.20 3.51
2606 5991 2.017049 GTGCTTGAACCACTCAACACT 58.983 47.619 10.36 0.00 39.20 3.55
2607 5992 1.065551 GGTGCTTGAACCACTCAACAC 59.934 52.381 0.00 9.65 39.20 3.32
2608 5993 1.064758 AGGTGCTTGAACCACTCAACA 60.065 47.619 0.01 0.00 43.20 3.33
2609 5994 1.680338 AGGTGCTTGAACCACTCAAC 58.320 50.000 0.01 0.00 43.20 3.18
2641 6036 2.163010 ACACGTCAACGGTCTACCTATG 59.837 50.000 7.53 0.00 44.95 2.23
2675 6070 1.342819 AGCTAGCTTGTCGATGGATCC 59.657 52.381 12.68 4.20 0.00 3.36
2687 6082 2.304180 ACAAGTGGTGATCAGCTAGCTT 59.696 45.455 24.30 20.35 0.00 3.74
2710 6108 9.703892 CTAGCTGCCCTCATCAATATATATTAC 57.296 37.037 7.65 0.00 0.00 1.89
2716 6120 4.478206 GCTAGCTGCCCTCATCAATATA 57.522 45.455 7.70 0.00 35.15 0.86
2785 6275 3.204606 ACACATGCCTCCTCCTACTACTA 59.795 47.826 0.00 0.00 0.00 1.82
2808 7023 9.643693 AAGCAAATTAATCTGTCAACCAAATAG 57.356 29.630 0.00 0.00 0.00 1.73
2851 8389 3.799963 GCATGCATCCATTACAACATGTG 59.200 43.478 14.21 0.00 37.73 3.21
2852 8390 3.447944 TGCATGCATCCATTACAACATGT 59.552 39.130 18.46 0.00 37.73 3.21
2853 8391 4.048241 TGCATGCATCCATTACAACATG 57.952 40.909 18.46 0.00 38.30 3.21
2854 8392 3.069016 CCTGCATGCATCCATTACAACAT 59.931 43.478 22.97 0.00 0.00 2.71
4045 9625 4.503910 TCATACGCTATATGGTTCATGCC 58.496 43.478 5.33 0.00 0.00 4.40
4113 9694 7.172532 ACACACACCTACAAACAACTACATATG 59.827 37.037 0.00 0.00 0.00 1.78
4120 9701 4.585879 AGAACACACACCTACAAACAACT 58.414 39.130 0.00 0.00 0.00 3.16
4254 9857 6.928492 ACCCGACGTTTATAACTTTCAAACTA 59.072 34.615 0.00 0.00 31.47 2.24
4382 9985 2.366916 CCTATCTTCTCAAGGACGCCAT 59.633 50.000 0.00 0.00 31.64 4.40
4419 10022 8.528044 TGTATTTTCATTCCACTTATTACCCC 57.472 34.615 0.00 0.00 0.00 4.95
4447 10050 8.893727 CAGGTACTCCTATTGAAATTAGTTTGG 58.106 37.037 0.00 0.00 43.07 3.28
4531 10147 4.771590 TCATCCTGTTGCATTTTCAGTC 57.228 40.909 0.00 0.00 0.00 3.51
4532 10148 4.525487 ACATCATCCTGTTGCATTTTCAGT 59.475 37.500 0.00 0.00 0.00 3.41
4610 10228 9.586435 GGCAAGTAAGAGTGCATTTTATTTATT 57.414 29.630 0.00 0.00 42.74 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.