Multiple sequence alignment - TraesCS4D01G147400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G147400 chr4D 100.000 4516 0 0 506 5021 138407771 138403256 0.000000e+00 8340
1 TraesCS4D01G147400 chr4D 100.000 259 0 0 1 259 138408276 138408018 3.520000e-131 479
2 TraesCS4D01G147400 chr4B 92.551 2027 116 12 2047 4055 226513742 226511733 0.000000e+00 2874
3 TraesCS4D01G147400 chr4B 92.597 770 26 5 810 1578 226514874 226514135 0.000000e+00 1077
4 TraesCS4D01G147400 chr4B 94.812 559 17 2 4051 4608 226511651 226511104 0.000000e+00 861
5 TraesCS4D01G147400 chr4B 89.941 338 23 5 1586 1921 226514092 226513764 4.650000e-115 425
6 TraesCS4D01G147400 chr4B 93.249 237 7 2 4786 5014 226506606 226506371 1.730000e-89 340
7 TraesCS4D01G147400 chr4B 90.385 260 24 1 1 259 226515418 226515159 1.730000e-89 340
8 TraesCS4D01G147400 chr4B 84.100 239 31 4 537 772 226515114 226514880 1.820000e-54 224
9 TraesCS4D01G147400 chr4B 84.466 206 16 8 4601 4790 226506887 226506682 6.640000e-44 189
10 TraesCS4D01G147400 chr4B 98.701 77 1 0 4507 4583 226511104 226511028 2.440000e-28 137
11 TraesCS4D01G147400 chr4A 91.609 1597 87 9 2044 3622 416229829 416231396 0.000000e+00 2163
12 TraesCS4D01G147400 chr4A 94.320 986 35 5 3621 4606 416231500 416232464 0.000000e+00 1491
13 TraesCS4D01G147400 chr4A 89.870 1076 62 16 506 1566 416228384 416229427 0.000000e+00 1339
14 TraesCS4D01G147400 chr4A 89.941 338 23 5 1586 1921 416229482 416229810 4.650000e-115 425
15 TraesCS4D01G147400 chr4A 91.120 259 23 0 1 259 416228095 416228353 8.000000e-93 351
16 TraesCS4D01G147400 chr4A 81.279 438 54 13 4604 5021 416232564 416232993 3.750000e-86 329
17 TraesCS4D01G147400 chr7A 86.853 251 32 1 1 251 238871729 238871978 3.830000e-71 279
18 TraesCS4D01G147400 chr1D 85.981 214 28 2 1 213 141896557 141896345 1.410000e-55 228
19 TraesCS4D01G147400 chr1B 85.514 214 30 1 1 213 196048453 196048240 6.540000e-54 222
20 TraesCS4D01G147400 chr3B 84.135 208 27 3 7 213 169657545 169657343 3.970000e-46 196
21 TraesCS4D01G147400 chr3D 82.883 222 33 5 1 220 33210905 33210687 1.430000e-45 195
22 TraesCS4D01G147400 chr3D 89.000 100 10 1 1920 2019 609983904 609983806 6.830000e-24 122
23 TraesCS4D01G147400 chr5B 81.818 220 35 2 1 220 335205931 335206145 3.990000e-41 180
24 TraesCS4D01G147400 chr5B 91.000 100 8 1 1919 2018 589999827 589999925 3.150000e-27 134
25 TraesCS4D01G147400 chr5B 88.889 108 11 1 1911 2018 166379077 166379183 1.130000e-26 132
26 TraesCS4D01G147400 chr5B 90.909 99 8 1 1919 2017 166379183 166379086 1.130000e-26 132
27 TraesCS4D01G147400 chr3A 88.489 139 14 2 1 138 659025427 659025290 3.110000e-37 167
28 TraesCS4D01G147400 chr3A 85.965 114 15 1 1904 2017 470095666 470095778 2.460000e-23 121
29 TraesCS4D01G147400 chr2A 90.196 102 9 1 1917 2018 362434662 362434762 1.130000e-26 132
30 TraesCS4D01G147400 chr7B 90.816 98 8 1 1920 2017 162120812 162120908 4.080000e-26 130
31 TraesCS4D01G147400 chr7B 86.607 112 14 1 1906 2017 162120922 162120812 6.830000e-24 122
32 TraesCS4D01G147400 chr6D 87.963 108 12 1 1910 2017 94768020 94768126 5.280000e-25 126
33 TraesCS4D01G147400 chr5A 85.047 107 9 7 519 620 312260615 312260719 8.890000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G147400 chr4D 138403256 138408276 5020 True 4409.500000 8340 100.000000 1 5021 2 chr4D.!!$R1 5020
1 TraesCS4D01G147400 chr4B 226511028 226515418 4390 True 848.285714 2874 91.869571 1 4608 7 chr4B.!!$R2 4607
2 TraesCS4D01G147400 chr4B 226506371 226506887 516 True 264.500000 340 88.857500 4601 5014 2 chr4B.!!$R1 413
3 TraesCS4D01G147400 chr4A 416228095 416232993 4898 False 1016.333333 2163 89.689833 1 5021 6 chr4A.!!$F1 5020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 994 0.035725 TGGTGCTGCTGAGAATCCTG 60.036 55.0 0.00 0.0 0.00 3.86 F
973 998 0.107800 GCTGCTGAGAATCCTGCTGA 60.108 55.0 0.00 0.0 35.66 4.26 F
1580 1618 0.527600 TCGATTCGTGCCTTGATCCG 60.528 55.0 5.89 0.0 0.00 4.18 F
2257 2332 0.037877 ACTTGGCTTCTCATGCTGCT 59.962 50.0 0.00 0.0 0.00 4.24 F
2938 3018 0.829333 AACTCTGCGGCATGAGATCT 59.171 50.0 25.64 0.0 34.65 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 2079 0.394762 TACGTGCTACACCCTCCGAT 60.395 55.0 0.00 0.00 0.0 4.18 R
2006 2081 0.458669 ATTACGTGCTACACCCTCCG 59.541 55.0 0.00 0.00 0.0 4.63 R
2706 2781 0.881118 TCCAATTTGAGGCGCTTCAC 59.119 50.0 23.01 4.26 0.0 3.18 R
3659 3856 0.035056 CTCCCGAAGCCAAACCTGAT 60.035 55.0 0.00 0.00 0.0 2.90 R
4094 4378 0.905357 GACATCCTACAGCACCCAGT 59.095 55.0 0.00 0.00 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.642489 AATCCCCATTCCCCTTGTATTT 57.358 40.909 0.00 0.00 0.00 1.40
37 38 5.237236 TCCCCTTGTATTTAATCCGGATC 57.763 43.478 19.43 4.34 0.00 3.36
58 60 2.745152 CGGAACCCTAAAATCCATCGCT 60.745 50.000 0.00 0.00 32.58 4.93
78 80 7.745620 TCGCTACTAGAAACTCATGATGATA 57.254 36.000 0.00 0.00 0.00 2.15
129 131 3.388024 CGATTCCCCATTCTCCTAGAACA 59.612 47.826 0.00 0.00 37.00 3.18
130 132 4.040952 CGATTCCCCATTCTCCTAGAACAT 59.959 45.833 0.00 0.00 37.00 2.71
185 187 5.356751 TCAAAATAGTGCTTATCGCCATTGT 59.643 36.000 0.00 0.00 38.05 2.71
193 195 1.286501 TATCGCCATTGTCGAAGTGC 58.713 50.000 0.00 0.00 39.54 4.40
216 218 2.045708 GGTGATGTTGCGGATGCCA 61.046 57.895 0.00 0.00 41.78 4.92
231 233 3.052082 CCAGTGGTCGCCTTGCTG 61.052 66.667 0.00 0.00 0.00 4.41
238 240 1.004440 GTCGCCTTGCTGTTCTCCT 60.004 57.895 0.00 0.00 0.00 3.69
244 246 1.482593 CCTTGCTGTTCTCCTATCCGT 59.517 52.381 0.00 0.00 0.00 4.69
531 542 2.911143 CGATGAGGGAAGGTGGGG 59.089 66.667 0.00 0.00 0.00 4.96
532 543 2.746375 CGATGAGGGAAGGTGGGGG 61.746 68.421 0.00 0.00 0.00 5.40
629 640 3.673484 CCACGTGCCTGGCTTTGG 61.673 66.667 21.03 18.10 0.00 3.28
634 647 1.733402 CGTGCCTGGCTTTGGAAACA 61.733 55.000 21.03 0.00 39.83 2.83
646 659 4.142381 GCTTTGGAAACAGCCGATTTAGAT 60.142 41.667 0.00 0.00 44.54 1.98
673 686 2.759795 GGGCCTGGCTGAGAGTTT 59.240 61.111 19.68 0.00 0.00 2.66
710 723 1.164411 TGCAGGCCTAACAATGAACG 58.836 50.000 3.98 0.00 0.00 3.95
713 726 1.135689 CAGGCCTAACAATGAACGCAC 60.136 52.381 3.98 0.00 0.00 5.34
717 730 2.006888 CCTAACAATGAACGCACGGAT 58.993 47.619 0.00 0.00 0.00 4.18
746 761 9.191995 GTAAGGAAAAACAATACACAAGGAATG 57.808 33.333 0.00 0.00 0.00 2.67
754 769 6.924111 ACAATACACAAGGAATGAAACATCC 58.076 36.000 0.00 0.00 35.88 3.51
794 809 0.040058 TGATTGGCCTCCATGCAAGT 59.960 50.000 3.32 0.00 31.53 3.16
797 812 2.530460 TTGGCCTCCATGCAAGTTAT 57.470 45.000 3.32 0.00 31.53 1.89
806 821 3.818210 TCCATGCAAGTTATCAAACACGT 59.182 39.130 0.00 0.00 38.12 4.49
807 822 4.083537 TCCATGCAAGTTATCAAACACGTC 60.084 41.667 0.00 0.00 38.12 4.34
842 863 2.613595 GTGTAAAACGAAAACGGGTCCT 59.386 45.455 0.00 0.00 0.00 3.85
862 883 0.834612 AGTCCCTGTCAACCGTTTCA 59.165 50.000 0.00 0.00 0.00 2.69
884 905 3.199677 CAGTTTCACGTAACAACCCTCA 58.800 45.455 4.15 0.00 0.00 3.86
896 921 6.128363 CGTAACAACCCTCATAAGAAAGTTCC 60.128 42.308 0.00 0.00 0.00 3.62
899 924 5.770162 ACAACCCTCATAAGAAAGTTCCAAG 59.230 40.000 0.00 0.00 0.00 3.61
964 989 1.165907 CCGTTTGGTGCTGCTGAGAA 61.166 55.000 0.00 0.00 0.00 2.87
965 990 0.877071 CGTTTGGTGCTGCTGAGAAT 59.123 50.000 0.00 0.00 0.00 2.40
966 991 1.135859 CGTTTGGTGCTGCTGAGAATC 60.136 52.381 0.00 0.00 0.00 2.52
967 992 1.200948 GTTTGGTGCTGCTGAGAATCC 59.799 52.381 0.00 0.00 0.00 3.01
968 993 0.694771 TTGGTGCTGCTGAGAATCCT 59.305 50.000 0.00 0.00 0.00 3.24
969 994 0.035725 TGGTGCTGCTGAGAATCCTG 60.036 55.000 0.00 0.00 0.00 3.86
970 995 1.375098 GGTGCTGCTGAGAATCCTGC 61.375 60.000 0.00 0.00 34.80 4.85
971 996 0.392729 GTGCTGCTGAGAATCCTGCT 60.393 55.000 0.00 0.00 35.18 4.24
972 997 0.392595 TGCTGCTGAGAATCCTGCTG 60.393 55.000 0.00 0.00 35.18 4.41
973 998 0.107800 GCTGCTGAGAATCCTGCTGA 60.108 55.000 0.00 0.00 35.66 4.26
974 999 1.942677 CTGCTGAGAATCCTGCTGAG 58.057 55.000 0.00 0.00 35.66 3.35
975 1000 1.481363 CTGCTGAGAATCCTGCTGAGA 59.519 52.381 0.00 0.00 35.66 3.27
976 1001 1.481363 TGCTGAGAATCCTGCTGAGAG 59.519 52.381 0.00 0.00 35.18 3.20
977 1002 1.202557 GCTGAGAATCCTGCTGAGAGG 60.203 57.143 0.00 0.00 32.17 3.69
1236 1273 2.340328 GCTGGTTCCGCCGGATTTT 61.340 57.895 6.69 0.00 46.81 1.82
1317 1354 0.620556 GGGAGCAATGTGAGAAGGGA 59.379 55.000 0.00 0.00 0.00 4.20
1364 1401 9.849166 CGAAATTTAAAGTTTATTAGGCAGGAA 57.151 29.630 1.98 0.00 0.00 3.36
1457 1495 2.091055 TCTGTGGGAAATTTGGTTGGGA 60.091 45.455 0.00 0.00 0.00 4.37
1501 1539 4.251543 TGCGTTCTCAAGTTCAGATGTA 57.748 40.909 0.00 0.00 0.00 2.29
1554 1592 3.278574 GCCACCAAGCAATACAGTGATA 58.721 45.455 0.00 0.00 0.00 2.15
1558 1596 5.180117 CCACCAAGCAATACAGTGATATAGC 59.820 44.000 0.00 0.00 0.00 2.97
1561 1599 7.000472 ACCAAGCAATACAGTGATATAGCAAT 59.000 34.615 0.00 0.00 0.00 3.56
1566 1604 7.821359 AGCAATACAGTGATATAGCAATCGATT 59.179 33.333 4.39 4.39 0.00 3.34
1568 1606 7.977490 ATACAGTGATATAGCAATCGATTCG 57.023 36.000 7.92 5.50 0.00 3.34
1569 1607 5.773575 ACAGTGATATAGCAATCGATTCGT 58.226 37.500 7.92 0.60 0.00 3.85
1570 1608 5.631096 ACAGTGATATAGCAATCGATTCGTG 59.369 40.000 7.92 0.00 0.00 4.35
1578 1616 2.600792 GCAATCGATTCGTGCCTTGATC 60.601 50.000 7.92 0.00 31.94 2.92
1579 1617 1.871080 ATCGATTCGTGCCTTGATCC 58.129 50.000 5.89 0.00 0.00 3.36
1580 1618 0.527600 TCGATTCGTGCCTTGATCCG 60.528 55.000 5.89 0.00 0.00 4.18
1581 1619 1.643832 GATTCGTGCCTTGATCCGC 59.356 57.895 0.00 0.00 0.00 5.54
1582 1620 2.094126 GATTCGTGCCTTGATCCGCG 62.094 60.000 0.00 0.00 36.39 6.46
1597 1670 2.099062 GCGCCTGTGCAAATCTCG 59.901 61.111 0.00 0.00 37.32 4.04
1641 1715 2.111384 TGAGATCAGTGGGCTACCTTC 58.889 52.381 0.00 0.00 37.76 3.46
1644 1718 2.111384 GATCAGTGGGCTACCTTCTCA 58.889 52.381 0.00 0.00 37.76 3.27
1645 1719 2.254152 TCAGTGGGCTACCTTCTCAT 57.746 50.000 0.00 0.00 37.76 2.90
1646 1720 2.111384 TCAGTGGGCTACCTTCTCATC 58.889 52.381 0.00 0.00 37.76 2.92
1647 1721 1.833630 CAGTGGGCTACCTTCTCATCA 59.166 52.381 0.00 0.00 37.76 3.07
1648 1722 2.437281 CAGTGGGCTACCTTCTCATCAT 59.563 50.000 0.00 0.00 37.76 2.45
1649 1723 3.118112 CAGTGGGCTACCTTCTCATCATT 60.118 47.826 0.00 0.00 37.76 2.57
1650 1724 3.118112 AGTGGGCTACCTTCTCATCATTG 60.118 47.826 0.00 0.00 37.76 2.82
1651 1725 2.225467 GGGCTACCTTCTCATCATTGC 58.775 52.381 0.00 0.00 0.00 3.56
1652 1726 2.158696 GGGCTACCTTCTCATCATTGCT 60.159 50.000 0.00 0.00 0.00 3.91
1653 1727 2.877168 GGCTACCTTCTCATCATTGCTG 59.123 50.000 0.00 0.00 0.00 4.41
1676 1750 3.554934 TGCTGAGACTGGAAAATGTTGT 58.445 40.909 0.00 0.00 0.00 3.32
1681 1755 5.139727 TGAGACTGGAAAATGTTGTTGGAT 58.860 37.500 0.00 0.00 0.00 3.41
1685 1759 6.094048 AGACTGGAAAATGTTGTTGGATATCG 59.906 38.462 0.00 0.00 0.00 2.92
1693 1767 3.570125 TGTTGTTGGATATCGCAAAACCA 59.430 39.130 7.84 0.00 0.00 3.67
1698 1772 5.167845 GTTGGATATCGCAAAACCAAACAT 58.832 37.500 0.00 0.00 41.29 2.71
1701 1775 6.559810 TGGATATCGCAAAACCAAACATTAG 58.440 36.000 0.00 0.00 0.00 1.73
1734 1808 4.530553 TGTAGATTCCTTGAACTGCTACCA 59.469 41.667 0.00 0.00 30.32 3.25
1736 1810 4.521146 AGATTCCTTGAACTGCTACCATG 58.479 43.478 0.00 0.00 0.00 3.66
1739 1813 1.614051 CCTTGAACTGCTACCATGGCA 60.614 52.381 13.04 2.94 38.10 4.92
1740 1814 2.161855 CTTGAACTGCTACCATGGCAA 58.838 47.619 13.04 4.30 39.30 4.52
1741 1815 2.512692 TGAACTGCTACCATGGCAAT 57.487 45.000 13.04 0.00 39.30 3.56
1743 1817 3.961849 TGAACTGCTACCATGGCAATAA 58.038 40.909 13.04 0.00 39.30 1.40
1744 1818 3.947196 TGAACTGCTACCATGGCAATAAG 59.053 43.478 13.04 6.08 39.30 1.73
1745 1819 2.301346 ACTGCTACCATGGCAATAAGC 58.699 47.619 13.04 13.46 39.30 3.09
1779 1854 7.009815 CCTTCATTGTTTTGCATAATGTAGCAG 59.990 37.037 11.02 6.02 42.39 4.24
1780 1855 7.155655 TCATTGTTTTGCATAATGTAGCAGA 57.844 32.000 11.02 0.00 42.39 4.26
1876 1951 9.757227 AATAGTACTCTTGCTCATATTCTTGTC 57.243 33.333 0.00 0.00 0.00 3.18
1910 1985 4.776349 TGCTGTAAGTTCCTCTTTGAACA 58.224 39.130 6.67 0.00 45.62 3.18
1929 2004 9.923143 TTTGAACAATATATACTACTCCATCGG 57.077 33.333 0.00 0.00 0.00 4.18
1930 2005 8.873186 TGAACAATATATACTACTCCATCGGA 57.127 34.615 0.00 0.00 0.00 4.55
1931 2006 9.475620 TGAACAATATATACTACTCCATCGGAT 57.524 33.333 0.00 0.00 0.00 4.18
1932 2007 9.953697 GAACAATATATACTACTCCATCGGATC 57.046 37.037 0.00 0.00 0.00 3.36
1933 2008 8.466617 ACAATATATACTACTCCATCGGATCC 57.533 38.462 0.00 0.00 0.00 3.36
1934 2009 8.059461 ACAATATATACTACTCCATCGGATCCA 58.941 37.037 13.41 0.00 0.00 3.41
1935 2010 8.914011 CAATATATACTACTCCATCGGATCCAA 58.086 37.037 13.41 0.00 0.00 3.53
1936 2011 9.488762 AATATATACTACTCCATCGGATCCAAA 57.511 33.333 13.41 0.00 0.00 3.28
1937 2012 7.792364 ATATACTACTCCATCGGATCCAAAA 57.208 36.000 13.41 0.00 0.00 2.44
1938 2013 6.688073 ATACTACTCCATCGGATCCAAAAT 57.312 37.500 13.41 0.00 0.00 1.82
1939 2014 7.792364 ATACTACTCCATCGGATCCAAAATA 57.208 36.000 13.41 0.00 0.00 1.40
1940 2015 6.494666 ACTACTCCATCGGATCCAAAATAA 57.505 37.500 13.41 0.00 0.00 1.40
1941 2016 6.525629 ACTACTCCATCGGATCCAAAATAAG 58.474 40.000 13.41 4.15 0.00 1.73
1942 2017 5.373812 ACTCCATCGGATCCAAAATAAGT 57.626 39.130 13.41 4.79 0.00 2.24
1943 2018 5.126067 ACTCCATCGGATCCAAAATAAGTG 58.874 41.667 13.41 0.00 0.00 3.16
1944 2019 5.110814 TCCATCGGATCCAAAATAAGTGT 57.889 39.130 13.41 0.00 0.00 3.55
1945 2020 5.123227 TCCATCGGATCCAAAATAAGTGTC 58.877 41.667 13.41 0.00 0.00 3.67
1946 2021 4.024893 CCATCGGATCCAAAATAAGTGTCG 60.025 45.833 13.41 0.00 0.00 4.35
1947 2022 2.933906 TCGGATCCAAAATAAGTGTCGC 59.066 45.455 13.41 0.00 0.00 5.19
1948 2023 2.675844 CGGATCCAAAATAAGTGTCGCA 59.324 45.455 13.41 0.00 0.00 5.10
1949 2024 3.242413 CGGATCCAAAATAAGTGTCGCAG 60.242 47.826 13.41 0.00 0.00 5.18
1950 2025 3.689649 GGATCCAAAATAAGTGTCGCAGT 59.310 43.478 6.95 0.00 0.00 4.40
1951 2026 4.156008 GGATCCAAAATAAGTGTCGCAGTT 59.844 41.667 6.95 5.48 0.00 3.16
1952 2027 5.335661 GGATCCAAAATAAGTGTCGCAGTTT 60.336 40.000 6.95 0.00 0.00 2.66
1953 2028 5.508200 TCCAAAATAAGTGTCGCAGTTTT 57.492 34.783 5.46 0.00 0.00 2.43
1954 2029 5.277825 TCCAAAATAAGTGTCGCAGTTTTG 58.722 37.500 5.46 11.07 36.70 2.44
1955 2030 5.066634 TCCAAAATAAGTGTCGCAGTTTTGA 59.933 36.000 16.09 6.08 38.26 2.69
1956 2031 5.746245 CCAAAATAAGTGTCGCAGTTTTGAA 59.254 36.000 16.09 0.00 38.26 2.69
1957 2032 6.291585 CCAAAATAAGTGTCGCAGTTTTGAAC 60.292 38.462 16.09 0.00 38.26 3.18
1958 2033 5.751243 AATAAGTGTCGCAGTTTTGAACT 57.249 34.783 5.46 0.00 44.06 3.01
1959 2034 6.854496 AATAAGTGTCGCAGTTTTGAACTA 57.146 33.333 5.46 0.00 40.46 2.24
1960 2035 6.854496 ATAAGTGTCGCAGTTTTGAACTAA 57.146 33.333 5.46 0.00 40.46 2.24
1961 2036 4.795970 AGTGTCGCAGTTTTGAACTAAG 57.204 40.909 0.00 0.00 40.46 2.18
1962 2037 4.439057 AGTGTCGCAGTTTTGAACTAAGA 58.561 39.130 0.00 0.00 40.46 2.10
1963 2038 5.057149 AGTGTCGCAGTTTTGAACTAAGAT 58.943 37.500 0.00 0.00 40.46 2.40
1964 2039 5.527582 AGTGTCGCAGTTTTGAACTAAGATT 59.472 36.000 0.00 0.00 40.46 2.40
1965 2040 5.621228 GTGTCGCAGTTTTGAACTAAGATTG 59.379 40.000 0.00 0.00 40.46 2.67
1966 2041 5.147162 GTCGCAGTTTTGAACTAAGATTGG 58.853 41.667 0.00 0.00 40.46 3.16
1967 2042 4.215399 TCGCAGTTTTGAACTAAGATTGGG 59.785 41.667 0.00 0.00 40.46 4.12
1968 2043 4.023193 CGCAGTTTTGAACTAAGATTGGGT 60.023 41.667 0.00 0.00 40.46 4.51
1969 2044 5.507315 CGCAGTTTTGAACTAAGATTGGGTT 60.507 40.000 0.00 0.00 40.46 4.11
1970 2045 5.920840 GCAGTTTTGAACTAAGATTGGGTTC 59.079 40.000 0.00 0.00 40.46 3.62
1971 2046 6.460953 GCAGTTTTGAACTAAGATTGGGTTCA 60.461 38.462 0.00 0.00 44.69 3.18
1975 2050 5.319043 TGAACTAAGATTGGGTTCAACCT 57.681 39.130 6.51 0.00 43.84 3.50
1976 2051 5.701224 TGAACTAAGATTGGGTTCAACCTT 58.299 37.500 6.51 0.00 43.84 3.50
1977 2052 6.843752 TGAACTAAGATTGGGTTCAACCTTA 58.156 36.000 6.51 0.00 43.84 2.69
1979 2054 5.819825 CTAAGATTGGGTTCAACCTTAGC 57.180 43.478 6.51 0.00 45.11 3.09
1980 2055 4.388577 AAGATTGGGTTCAACCTTAGCT 57.611 40.909 6.51 0.00 35.06 3.32
1981 2056 3.956744 AGATTGGGTTCAACCTTAGCTC 58.043 45.455 6.51 0.00 38.64 4.09
1982 2057 3.330701 AGATTGGGTTCAACCTTAGCTCA 59.669 43.478 6.51 0.00 38.64 4.26
1983 2058 3.586470 TTGGGTTCAACCTTAGCTCAA 57.414 42.857 6.51 0.00 38.64 3.02
1984 2059 3.586470 TGGGTTCAACCTTAGCTCAAA 57.414 42.857 6.51 0.00 38.64 2.69
1985 2060 3.904717 TGGGTTCAACCTTAGCTCAAAA 58.095 40.909 6.51 0.00 38.64 2.44
1986 2061 3.634910 TGGGTTCAACCTTAGCTCAAAAC 59.365 43.478 6.51 0.00 38.64 2.43
1987 2062 3.889538 GGGTTCAACCTTAGCTCAAAACT 59.110 43.478 6.51 0.00 38.64 2.66
1988 2063 4.261614 GGGTTCAACCTTAGCTCAAAACTG 60.262 45.833 6.51 0.00 38.64 3.16
1989 2064 4.290969 GTTCAACCTTAGCTCAAAACTGC 58.709 43.478 0.00 0.00 0.00 4.40
1990 2065 2.548057 TCAACCTTAGCTCAAAACTGCG 59.452 45.455 0.00 0.00 0.00 5.18
1991 2066 2.543777 ACCTTAGCTCAAAACTGCGA 57.456 45.000 0.00 0.00 0.00 5.10
1992 2067 2.143925 ACCTTAGCTCAAAACTGCGAC 58.856 47.619 0.00 0.00 0.00 5.19
1993 2068 2.143122 CCTTAGCTCAAAACTGCGACA 58.857 47.619 0.00 0.00 0.00 4.35
1994 2069 2.096218 CCTTAGCTCAAAACTGCGACAC 60.096 50.000 0.00 0.00 0.00 3.67
1995 2070 2.526304 TAGCTCAAAACTGCGACACT 57.474 45.000 0.00 0.00 0.00 3.55
1996 2071 1.668419 AGCTCAAAACTGCGACACTT 58.332 45.000 0.00 0.00 0.00 3.16
1997 2072 2.833794 AGCTCAAAACTGCGACACTTA 58.166 42.857 0.00 0.00 0.00 2.24
1998 2073 3.403038 AGCTCAAAACTGCGACACTTAT 58.597 40.909 0.00 0.00 0.00 1.73
1999 2074 3.815401 AGCTCAAAACTGCGACACTTATT 59.185 39.130 0.00 0.00 0.00 1.40
2000 2075 4.275936 AGCTCAAAACTGCGACACTTATTT 59.724 37.500 0.00 0.00 0.00 1.40
2001 2076 4.976116 GCTCAAAACTGCGACACTTATTTT 59.024 37.500 0.00 0.00 0.00 1.82
2002 2077 5.108254 GCTCAAAACTGCGACACTTATTTTG 60.108 40.000 0.00 0.00 38.03 2.44
2003 2078 5.277825 TCAAAACTGCGACACTTATTTTGG 58.722 37.500 7.24 0.00 37.53 3.28
2004 2079 5.066634 TCAAAACTGCGACACTTATTTTGGA 59.933 36.000 7.24 0.00 37.53 3.53
2005 2080 5.705609 AAACTGCGACACTTATTTTGGAT 57.294 34.783 0.00 0.00 0.00 3.41
2006 2081 4.946784 ACTGCGACACTTATTTTGGATC 57.053 40.909 0.00 0.00 0.00 3.36
2007 2082 3.370978 ACTGCGACACTTATTTTGGATCG 59.629 43.478 0.00 0.00 0.00 3.69
2008 2083 2.675844 TGCGACACTTATTTTGGATCGG 59.324 45.455 0.00 0.00 0.00 4.18
2009 2084 2.933906 GCGACACTTATTTTGGATCGGA 59.066 45.455 0.00 0.00 0.00 4.55
2010 2085 3.001330 GCGACACTTATTTTGGATCGGAG 59.999 47.826 0.00 0.00 0.00 4.63
2011 2086 3.555956 CGACACTTATTTTGGATCGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
2012 2087 3.877508 GACACTTATTTTGGATCGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2013 2088 3.265995 ACACTTATTTTGGATCGGAGGGT 59.734 43.478 0.00 0.00 0.00 4.34
2014 2089 3.627577 CACTTATTTTGGATCGGAGGGTG 59.372 47.826 0.00 0.00 0.00 4.61
2028 2103 3.429272 CGGAGGGTGTAGCACGTAATTTA 60.429 47.826 0.00 0.00 34.83 1.40
2029 2104 3.867493 GGAGGGTGTAGCACGTAATTTAC 59.133 47.826 0.00 0.00 34.83 2.01
2042 2117 9.351570 AGCACGTAATTTACTTAAGAACTACTC 57.648 33.333 10.09 0.00 0.00 2.59
2043 2118 9.132521 GCACGTAATTTACTTAAGAACTACTCA 57.867 33.333 10.09 0.00 0.00 3.41
2068 2143 6.628644 ATTACTTCCTCAAACTCCTAGCTT 57.371 37.500 0.00 0.00 0.00 3.74
2082 2157 3.077359 CCTAGCTTGAGGAGTTTTGTGG 58.923 50.000 0.00 0.00 39.15 4.17
2084 2159 1.032014 GCTTGAGGAGTTTTGTGGCA 58.968 50.000 0.00 0.00 0.00 4.92
2097 2172 3.737559 TTGTGGCAGGAATATCCTTGT 57.262 42.857 0.00 0.00 46.91 3.16
2110 2185 7.175641 AGGAATATCCTTGTGTGACTCAAAAAG 59.824 37.037 1.58 0.00 46.91 2.27
2149 2224 4.081476 GCTTGCCTAAATGAATTCCAGGTT 60.081 41.667 2.27 0.00 0.00 3.50
2178 2253 3.388676 TCCGACCTAACCTCACTTTTGAA 59.611 43.478 0.00 0.00 0.00 2.69
2219 2294 3.070446 TGAAGGTCACACGAAGGTACAAT 59.930 43.478 0.00 0.00 0.00 2.71
2224 2299 4.000988 GTCACACGAAGGTACAATCCATT 58.999 43.478 0.00 0.00 0.00 3.16
2230 2305 5.872617 CACGAAGGTACAATCCATTAGACAA 59.127 40.000 0.00 0.00 0.00 3.18
2249 2324 5.760743 AGACAAAAACTAGACTTGGCTTCTC 59.239 40.000 0.00 0.00 34.71 2.87
2257 2332 0.037877 ACTTGGCTTCTCATGCTGCT 59.962 50.000 0.00 0.00 0.00 4.24
2269 2344 3.213506 TCATGCTGCTTGTACAAACTGT 58.786 40.909 10.03 0.00 0.00 3.55
2270 2345 3.631686 TCATGCTGCTTGTACAAACTGTT 59.368 39.130 10.03 0.00 0.00 3.16
2277 2352 6.067263 TGCTTGTACAAACTGTTCATAACC 57.933 37.500 10.03 0.00 28.00 2.85
2300 2375 9.974980 AACCACGTTCTTTGTTTGATTATTAAT 57.025 25.926 0.00 0.00 0.00 1.40
2301 2376 9.405587 ACCACGTTCTTTGTTTGATTATTAATG 57.594 29.630 0.00 0.00 0.00 1.90
2311 2386 8.770438 TGTTTGATTATTAATGCAGGGTTTTC 57.230 30.769 0.00 0.00 0.00 2.29
2357 2432 8.375506 AGATGTAGAGAAATGTTTACAGGTTCA 58.624 33.333 10.11 0.00 30.39 3.18
2358 2433 8.918202 ATGTAGAGAAATGTTTACAGGTTCAA 57.082 30.769 10.11 0.00 30.39 2.69
2375 2450 6.695278 CAGGTTCAATATTTTTGTGTTCACGT 59.305 34.615 0.00 0.00 0.00 4.49
2393 2468 6.030548 TCACGTCTTCTCATGATCTTCTTT 57.969 37.500 0.00 0.00 0.00 2.52
2532 2607 3.066203 CACCCAAGAACACAGGTACAAAC 59.934 47.826 0.00 0.00 0.00 2.93
2536 2611 5.507315 CCCAAGAACACAGGTACAAACAATC 60.507 44.000 0.00 0.00 0.00 2.67
2545 2620 3.749609 AGGTACAAACAATCGCTGGTTAC 59.250 43.478 0.00 0.00 31.23 2.50
2546 2621 3.749609 GGTACAAACAATCGCTGGTTACT 59.250 43.478 0.00 0.00 31.23 2.24
2548 2623 5.409214 GGTACAAACAATCGCTGGTTACTTA 59.591 40.000 0.00 0.00 31.23 2.24
2549 2624 5.352643 ACAAACAATCGCTGGTTACTTAC 57.647 39.130 0.00 0.00 31.23 2.34
2550 2625 4.817464 ACAAACAATCGCTGGTTACTTACA 59.183 37.500 0.00 0.00 31.23 2.41
2551 2626 5.472137 ACAAACAATCGCTGGTTACTTACAT 59.528 36.000 0.00 0.00 31.23 2.29
2634 2709 9.601971 GTTCTAGCGAATAGTTTCTAGACATAG 57.398 37.037 0.00 0.00 37.74 2.23
2712 2787 7.437862 TCCAACATCAAAATTTACTTGTGAAGC 59.562 33.333 0.00 0.00 0.00 3.86
2775 2850 1.873591 GTAACTTATCCAGGCATGCCG 59.126 52.381 30.50 23.56 41.95 5.69
2792 2867 1.813513 CCGGATGCAATGGTATCTCC 58.186 55.000 0.00 0.00 36.49 3.71
2793 2868 4.773638 GCCGGATGCAATGGTATCTCCA 62.774 54.545 5.05 0.00 45.12 3.86
2804 2881 1.344763 GGTATCTCCAATCTCCACCGG 59.655 57.143 0.00 0.00 35.97 5.28
2805 2882 1.048601 TATCTCCAATCTCCACCGGC 58.951 55.000 0.00 0.00 0.00 6.13
2806 2883 0.982852 ATCTCCAATCTCCACCGGCA 60.983 55.000 0.00 0.00 0.00 5.69
2810 2887 1.185315 CCAATCTCCACCGGCAAATT 58.815 50.000 0.00 0.00 0.00 1.82
2823 2900 8.097662 TCCACCGGCAAATTTTCTATTATTTTT 58.902 29.630 0.00 0.00 0.00 1.94
2861 2938 6.757897 TGAGTTTGAAATCACTTGTTCACT 57.242 33.333 0.00 0.00 33.58 3.41
2938 3018 0.829333 AACTCTGCGGCATGAGATCT 59.171 50.000 25.64 0.00 34.65 2.75
3061 3141 6.378564 TGATCTCTCTGTAAGTACCTTTGAGG 59.621 42.308 0.00 0.00 36.88 3.86
3087 3177 4.031314 CGTGTGTTACTTGGACATGTATCG 59.969 45.833 0.00 0.00 0.00 2.92
3097 3187 4.441792 TGGACATGTATCGTCAATTCTGG 58.558 43.478 0.00 0.00 34.97 3.86
3110 3200 4.072131 TCAATTCTGGGTACTTTCTGTGC 58.928 43.478 0.00 0.00 0.00 4.57
3135 3225 4.513442 TGTTATGGAAGTACATGCAGGAC 58.487 43.478 4.84 0.00 32.39 3.85
3137 3227 2.768253 TGGAAGTACATGCAGGACTG 57.232 50.000 4.84 0.00 0.00 3.51
3195 3285 8.133627 CAGCTGAATTCCGATTTTGATCTAAAT 58.866 33.333 8.42 13.86 0.00 1.40
3229 3319 2.924926 CCAATGTGGATCATGCGTTTTG 59.075 45.455 0.00 0.00 40.96 2.44
3236 3326 2.599973 GGATCATGCGTTTTGACATTGC 59.400 45.455 0.00 0.00 0.00 3.56
3258 3348 5.221402 TGCATGTAAATCCAACAAAGCAAGA 60.221 36.000 0.00 0.00 38.31 3.02
3260 3350 6.346838 GCATGTAAATCCAACAAAGCAAGAAC 60.347 38.462 0.00 0.00 34.20 3.01
3261 3351 6.214191 TGTAAATCCAACAAAGCAAGAACA 57.786 33.333 0.00 0.00 0.00 3.18
3345 3437 5.100751 CAGTCAACTGATTTCTCGCTTTT 57.899 39.130 4.05 0.00 46.59 2.27
3347 3439 6.658831 CAGTCAACTGATTTCTCGCTTTTTA 58.341 36.000 4.05 0.00 46.59 1.52
3353 3445 9.185192 CAACTGATTTCTCGCTTTTTATTTTCT 57.815 29.630 0.00 0.00 0.00 2.52
3481 3573 1.401552 CGCGTGACCCATGAAAATGAT 59.598 47.619 0.00 0.00 0.00 2.45
3603 3695 8.783093 CCACAGTAAATTGATTGTCTTGTAGAA 58.217 33.333 0.00 0.00 0.00 2.10
3659 3856 6.951062 TGTTTGTTCCACATTTATCTGTCA 57.049 33.333 0.00 0.00 0.00 3.58
3675 3872 0.804989 GTCATCAGGTTTGGCTTCGG 59.195 55.000 0.00 0.00 0.00 4.30
3702 3899 6.672657 AGACCATAGTAGGAAATGTGGTTACT 59.327 38.462 0.00 0.00 39.86 2.24
3732 3929 3.643320 AGACAGTCTGTGATTGTTCAGGA 59.357 43.478 11.04 0.00 32.82 3.86
3771 3969 4.082665 CAGGTATTGACATGCCTCTCAT 57.917 45.455 0.00 0.00 43.39 2.90
3782 3980 6.539826 TGACATGCCTCTCATATTTGTTGTAG 59.460 38.462 0.00 0.00 33.19 2.74
3792 3990 8.486210 TCTCATATTTGTTGTAGAAGTATGCCT 58.514 33.333 0.00 0.00 0.00 4.75
3797 3995 4.093743 TGTTGTAGAAGTATGCCTCTCCA 58.906 43.478 0.00 0.00 0.00 3.86
3798 3996 4.716784 TGTTGTAGAAGTATGCCTCTCCAT 59.283 41.667 0.00 0.00 0.00 3.41
3799 3997 5.897250 TGTTGTAGAAGTATGCCTCTCCATA 59.103 40.000 0.00 0.00 0.00 2.74
3809 4007 7.465116 AGTATGCCTCTCCATATTTTGCTTAT 58.535 34.615 0.00 0.00 31.01 1.73
3864 4062 3.370315 GGAGAAGTGTGGCAGATCATCTT 60.370 47.826 0.00 0.00 0.00 2.40
3906 4104 2.225091 ACATGCTGATTCAAGGGGAACA 60.225 45.455 0.00 0.00 38.60 3.18
3967 4165 6.267242 TGGTGACATTCTTCAATTTGATGGAA 59.733 34.615 13.75 13.75 33.40 3.53
4011 4209 2.363680 ACAGAAGCGATATCCTGTGGAG 59.636 50.000 10.46 0.00 38.32 3.86
4110 4394 0.615331 CACACTGGGTGCTGTAGGAT 59.385 55.000 0.00 0.00 41.36 3.24
4150 4434 2.863739 GGTTTCGCCTTTAGAATGTGC 58.136 47.619 0.00 0.00 0.00 4.57
4153 4437 0.393808 TCGCCTTTAGAATGTGCCCC 60.394 55.000 0.00 0.00 0.00 5.80
4177 4461 7.071321 CCCCCTTTACTCTAGTGAGAATTGTAT 59.929 40.741 0.00 0.00 42.73 2.29
4187 4471 9.360901 TCTAGTGAGAATTGTATATGAAGCTCT 57.639 33.333 0.00 0.00 0.00 4.09
4200 4484 3.838120 TGAAGCTCTGTCGACATTGTAG 58.162 45.455 20.40 14.61 0.00 2.74
4201 4485 2.949451 AGCTCTGTCGACATTGTAGG 57.051 50.000 20.40 6.28 0.00 3.18
4202 4486 1.134965 AGCTCTGTCGACATTGTAGGC 60.135 52.381 20.40 15.60 0.00 3.93
4203 4487 1.404181 GCTCTGTCGACATTGTAGGCA 60.404 52.381 20.40 4.15 0.00 4.75
4204 4488 2.263077 CTCTGTCGACATTGTAGGCAC 58.737 52.381 20.40 0.00 0.00 5.01
4205 4489 0.992072 CTGTCGACATTGTAGGCACG 59.008 55.000 20.40 0.00 0.00 5.34
4206 4490 1.011968 TGTCGACATTGTAGGCACGC 61.012 55.000 15.76 0.00 0.00 5.34
4207 4491 1.447140 TCGACATTGTAGGCACGCC 60.447 57.895 0.00 0.00 0.00 5.68
4208 4492 1.739929 CGACATTGTAGGCACGCCA 60.740 57.895 11.35 0.00 38.92 5.69
4209 4493 1.089481 CGACATTGTAGGCACGCCAT 61.089 55.000 11.35 0.00 38.92 4.40
4210 4494 1.804746 CGACATTGTAGGCACGCCATA 60.805 52.381 11.35 0.00 38.92 2.74
4219 4503 3.207265 AGGCACGCCATAATTGATGTA 57.793 42.857 11.35 0.00 38.92 2.29
4303 4587 6.777526 ATCTAGCTTATTGTGATTCTTCGC 57.222 37.500 0.00 0.00 0.00 4.70
4305 4589 6.341316 TCTAGCTTATTGTGATTCTTCGCTT 58.659 36.000 0.00 0.00 33.38 4.68
4355 4639 0.459237 AGCATTTCGTCTCGCCTCTG 60.459 55.000 0.00 0.00 0.00 3.35
4576 4860 4.397348 CCTGTAGGGTTGCACCAC 57.603 61.111 7.49 0.00 41.02 4.16
4588 4872 0.612744 TGCACCACATCGGAGAATCA 59.387 50.000 0.00 0.00 43.58 2.57
4618 5004 9.650539 AGAATAGATACTACTTTGCAGCATATG 57.349 33.333 0.00 0.00 0.00 1.78
4671 5073 1.099295 CATGTGCTGGATCATGGCGT 61.099 55.000 0.00 0.00 38.10 5.68
4684 5086 3.737172 GGCGTGGCGAATGCTTGT 61.737 61.111 2.66 0.00 40.93 3.16
4733 5135 5.065731 GGCGAACATTGAAATCTTGAGAGAT 59.934 40.000 0.00 0.00 44.51 2.75
4747 5149 3.778618 TGAGAGATGACAGAGAATTGCG 58.221 45.455 0.00 0.00 0.00 4.85
4771 5173 0.950555 GCACTGATTCCACTGTCGCA 60.951 55.000 0.00 0.00 0.00 5.10
4853 5337 1.017387 GCTATTCTGAACGCCAAGGG 58.983 55.000 0.00 0.00 0.00 3.95
4875 5359 4.438148 GAAGCTGATCCTTCTTCCTGTAC 58.562 47.826 4.89 0.00 38.50 2.90
4907 5391 1.486726 CTCTCCTTAGCCGGTGGAATT 59.513 52.381 1.90 0.00 0.00 2.17
4926 5410 1.399714 TAGATCCCTGTGCCGTACTG 58.600 55.000 0.00 0.00 0.00 2.74
4955 5447 1.080366 TGTCGACGTTAGCGCCATT 60.080 52.632 11.62 0.00 42.83 3.16
4985 5477 6.452494 TTGTTCTGAGCCTCTGTACTATAC 57.548 41.667 9.19 0.00 0.00 1.47
5015 5507 7.173218 CAGTAAAATGAGTGAAGTTAGAAGCCA 59.827 37.037 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.602377 GCGATGGATTTTAGGGTTCCG 59.398 52.381 0.00 0.00 31.90 4.30
129 131 9.613428 TCAGTTACTATTTTTCATTCGATCCAT 57.387 29.630 0.00 0.00 0.00 3.41
130 132 9.098355 CTCAGTTACTATTTTTCATTCGATCCA 57.902 33.333 0.00 0.00 0.00 3.41
152 154 4.213564 AGCACTATTTTGACCTCCTCAG 57.786 45.455 0.00 0.00 0.00 3.35
185 187 2.942796 ATCACCCGCAGCACTTCGA 61.943 57.895 0.00 0.00 0.00 3.71
193 195 3.803082 CCGCAACATCACCCGCAG 61.803 66.667 0.00 0.00 0.00 5.18
216 218 1.598130 GAACAGCAAGGCGACCACT 60.598 57.895 0.00 0.00 0.00 4.00
231 233 1.925185 GCGTTCAACGGATAGGAGAAC 59.075 52.381 12.81 0.00 42.82 3.01
238 240 2.509786 GGCGGCGTTCAACGGATA 60.510 61.111 12.81 0.00 42.82 2.59
536 547 1.520600 CGCCGGCAATAATTACCCCC 61.521 60.000 28.98 0.00 0.00 5.40
537 548 1.953772 CGCCGGCAATAATTACCCC 59.046 57.895 28.98 0.00 0.00 4.95
538 549 1.170290 AGCGCCGGCAATAATTACCC 61.170 55.000 28.98 0.53 43.41 3.69
570 581 2.561885 CCACGCTCGAGAAGTCGT 59.438 61.111 18.75 13.43 46.85 4.34
629 640 4.636206 AGGAACATCTAAATCGGCTGTTTC 59.364 41.667 0.00 0.00 30.63 2.78
634 647 3.553096 CGCTAGGAACATCTAAATCGGCT 60.553 47.826 0.00 0.00 0.00 5.52
646 659 3.399181 CCAGGCCCGCTAGGAACA 61.399 66.667 0.00 0.00 41.02 3.18
671 684 3.504520 GCATCCCACGGAACTTTAAGAAA 59.495 43.478 0.00 0.00 34.34 2.52
673 686 2.039216 TGCATCCCACGGAACTTTAAGA 59.961 45.455 0.00 0.00 34.34 2.10
713 726 4.957759 ATTGTTTTTCCTTACGGATCCG 57.042 40.909 32.20 32.20 39.58 4.18
717 730 6.016943 CCTTGTGTATTGTTTTTCCTTACGGA 60.017 38.462 0.00 0.00 37.60 4.69
725 738 9.092876 TGTTTCATTCCTTGTGTATTGTTTTTC 57.907 29.630 0.00 0.00 0.00 2.29
761 776 2.449464 CCAATCAGACCCATGCAGAAA 58.551 47.619 0.00 0.00 0.00 2.52
764 779 1.389609 GGCCAATCAGACCCATGCAG 61.390 60.000 0.00 0.00 0.00 4.41
765 780 1.380246 GGCCAATCAGACCCATGCA 60.380 57.895 0.00 0.00 0.00 3.96
766 781 1.076485 AGGCCAATCAGACCCATGC 60.076 57.895 5.01 0.00 0.00 4.06
767 782 0.466922 GGAGGCCAATCAGACCCATG 60.467 60.000 5.01 0.00 0.00 3.66
768 783 0.920763 TGGAGGCCAATCAGACCCAT 60.921 55.000 5.01 0.00 0.00 4.00
769 784 0.920763 ATGGAGGCCAATCAGACCCA 60.921 55.000 5.01 0.00 36.95 4.51
770 785 0.466922 CATGGAGGCCAATCAGACCC 60.467 60.000 5.01 0.00 36.95 4.46
794 809 4.219944 AGAGCACTAGGACGTGTTTGATAA 59.780 41.667 0.00 0.00 37.24 1.75
797 812 1.961394 AGAGCACTAGGACGTGTTTGA 59.039 47.619 0.00 0.00 37.24 2.69
806 821 3.451402 TTACACCTCAGAGCACTAGGA 57.549 47.619 11.57 0.00 34.34 2.94
807 822 4.246458 GTTTTACACCTCAGAGCACTAGG 58.754 47.826 0.00 5.54 36.42 3.02
842 863 2.040939 TGAAACGGTTGACAGGGACTA 58.959 47.619 0.00 0.00 36.02 2.59
862 883 3.200483 GAGGGTTGTTACGTGAAACTGT 58.800 45.455 0.00 0.00 31.75 3.55
884 905 6.551227 AGGAGCAAAACTTGGAACTTTCTTAT 59.449 34.615 0.00 0.00 0.00 1.73
896 921 3.058224 CGGGAAAGTAGGAGCAAAACTTG 60.058 47.826 0.00 0.00 33.85 3.16
899 924 2.483106 GACGGGAAAGTAGGAGCAAAAC 59.517 50.000 0.00 0.00 0.00 2.43
964 989 0.253347 TTTCCCCCTCTCAGCAGGAT 60.253 55.000 0.00 0.00 35.20 3.24
965 990 0.911525 CTTTCCCCCTCTCAGCAGGA 60.912 60.000 0.00 0.00 35.20 3.86
966 991 0.911525 TCTTTCCCCCTCTCAGCAGG 60.912 60.000 0.00 0.00 0.00 4.85
967 992 0.987294 TTCTTTCCCCCTCTCAGCAG 59.013 55.000 0.00 0.00 0.00 4.24
968 993 1.352352 CTTTCTTTCCCCCTCTCAGCA 59.648 52.381 0.00 0.00 0.00 4.41
969 994 1.630878 TCTTTCTTTCCCCCTCTCAGC 59.369 52.381 0.00 0.00 0.00 4.26
970 995 3.055458 GTCTCTTTCTTTCCCCCTCTCAG 60.055 52.174 0.00 0.00 0.00 3.35
971 996 2.907042 GTCTCTTTCTTTCCCCCTCTCA 59.093 50.000 0.00 0.00 0.00 3.27
972 997 2.093921 CGTCTCTTTCTTTCCCCCTCTC 60.094 54.545 0.00 0.00 0.00 3.20
973 998 1.903183 CGTCTCTTTCTTTCCCCCTCT 59.097 52.381 0.00 0.00 0.00 3.69
974 999 1.624312 ACGTCTCTTTCTTTCCCCCTC 59.376 52.381 0.00 0.00 0.00 4.30
975 1000 1.624312 GACGTCTCTTTCTTTCCCCCT 59.376 52.381 8.70 0.00 0.00 4.79
976 1001 1.672145 CGACGTCTCTTTCTTTCCCCC 60.672 57.143 14.70 0.00 0.00 5.40
977 1002 1.672145 CCGACGTCTCTTTCTTTCCCC 60.672 57.143 14.70 0.00 0.00 4.81
1236 1273 2.552093 TTTTCCTCAACCCCAACCAA 57.448 45.000 0.00 0.00 0.00 3.67
1308 1345 5.780282 TCACTTCTATCTTGTTCCCTTCTCA 59.220 40.000 0.00 0.00 0.00 3.27
1317 1354 8.547967 TTTCGCTAAATCACTTCTATCTTGTT 57.452 30.769 0.00 0.00 0.00 2.83
1352 1389 6.204852 ACCATTCATCATTCCTGCCTAATA 57.795 37.500 0.00 0.00 0.00 0.98
1356 1393 4.404640 CATACCATTCATCATTCCTGCCT 58.595 43.478 0.00 0.00 0.00 4.75
1364 1401 4.603171 TCCCCTTAGCATACCATTCATCAT 59.397 41.667 0.00 0.00 0.00 2.45
1422 1460 5.160607 TCCCACAGATTACACGAAATCTT 57.839 39.130 8.87 1.72 42.28 2.40
1457 1495 6.569226 GCATGAAGCATCTGAACTTTACTGTT 60.569 38.462 0.00 0.00 44.79 3.16
1554 1592 2.533266 AGGCACGAATCGATTGCTAT 57.467 45.000 16.96 4.36 36.46 2.97
1558 1596 2.032549 GGATCAAGGCACGAATCGATTG 60.033 50.000 16.96 10.40 0.00 2.67
1561 1599 0.527600 CGGATCAAGGCACGAATCGA 60.528 55.000 10.55 0.00 0.00 3.59
1578 1616 3.386867 GAGATTTGCACAGGCGCGG 62.387 63.158 8.83 0.00 45.35 6.46
1579 1617 2.099062 GAGATTTGCACAGGCGCG 59.901 61.111 0.00 0.00 45.35 6.86
1580 1618 1.358725 TACGAGATTTGCACAGGCGC 61.359 55.000 0.00 0.00 45.35 6.53
1581 1619 0.647410 CTACGAGATTTGCACAGGCG 59.353 55.000 0.00 0.00 45.35 5.52
1582 1620 2.010145 TCTACGAGATTTGCACAGGC 57.990 50.000 0.00 0.00 41.68 4.85
1583 1621 3.745975 TGTTTCTACGAGATTTGCACAGG 59.254 43.478 0.00 0.00 0.00 4.00
1597 1670 5.163513 CCTTTCATGCATGGTTGTTTCTAC 58.836 41.667 25.97 0.00 0.00 2.59
1644 1718 2.747989 CAGTCTCAGCAACAGCAATGAT 59.252 45.455 0.00 0.00 0.00 2.45
1645 1719 2.148768 CAGTCTCAGCAACAGCAATGA 58.851 47.619 0.00 0.00 0.00 2.57
1646 1720 1.199327 CCAGTCTCAGCAACAGCAATG 59.801 52.381 0.00 0.00 0.00 2.82
1647 1721 1.072806 TCCAGTCTCAGCAACAGCAAT 59.927 47.619 0.00 0.00 0.00 3.56
1648 1722 0.469494 TCCAGTCTCAGCAACAGCAA 59.531 50.000 0.00 0.00 0.00 3.91
1649 1723 0.469494 TTCCAGTCTCAGCAACAGCA 59.531 50.000 0.00 0.00 0.00 4.41
1650 1724 1.597742 TTTCCAGTCTCAGCAACAGC 58.402 50.000 0.00 0.00 0.00 4.40
1651 1725 3.567164 ACATTTTCCAGTCTCAGCAACAG 59.433 43.478 0.00 0.00 0.00 3.16
1652 1726 3.554934 ACATTTTCCAGTCTCAGCAACA 58.445 40.909 0.00 0.00 0.00 3.33
1653 1727 4.202050 ACAACATTTTCCAGTCTCAGCAAC 60.202 41.667 0.00 0.00 0.00 4.17
1676 1750 4.855715 TGTTTGGTTTTGCGATATCCAA 57.144 36.364 0.00 0.05 36.55 3.53
1681 1755 8.394877 CAGATACTAATGTTTGGTTTTGCGATA 58.605 33.333 0.00 0.00 0.00 2.92
1734 1808 3.580039 AGGGCTTTATGCTTATTGCCAT 58.420 40.909 18.40 12.36 41.86 4.40
1736 1810 3.384467 TGAAGGGCTTTATGCTTATTGCC 59.616 43.478 12.17 12.17 42.00 4.52
1739 1813 6.796785 ACAATGAAGGGCTTTATGCTTATT 57.203 33.333 0.00 0.00 42.39 1.40
1740 1814 6.796785 AACAATGAAGGGCTTTATGCTTAT 57.203 33.333 0.00 0.00 42.39 1.73
1741 1815 6.603940 AAACAATGAAGGGCTTTATGCTTA 57.396 33.333 0.00 0.00 42.39 3.09
1743 1817 5.240121 CAAAACAATGAAGGGCTTTATGCT 58.760 37.500 0.00 0.00 42.39 3.79
1744 1818 4.142838 GCAAAACAATGAAGGGCTTTATGC 60.143 41.667 0.00 0.00 41.94 3.14
1745 1819 4.996122 TGCAAAACAATGAAGGGCTTTATG 59.004 37.500 0.00 0.00 0.00 1.90
1746 1820 5.226194 TGCAAAACAATGAAGGGCTTTAT 57.774 34.783 0.00 0.00 0.00 1.40
1747 1821 4.679373 TGCAAAACAATGAAGGGCTTTA 57.321 36.364 0.00 0.00 0.00 1.85
1779 1854 7.482428 TGCGTAAAGAAAGTGTAAACAACTTTC 59.518 33.333 17.24 17.24 45.60 2.62
1780 1855 7.306953 TGCGTAAAGAAAGTGTAAACAACTTT 58.693 30.769 1.39 1.39 36.53 2.66
1801 1876 1.744368 CCTGAGCTCTGCATTGCGT 60.744 57.895 16.19 0.00 0.00 5.24
1802 1877 0.814410 ATCCTGAGCTCTGCATTGCG 60.814 55.000 16.19 0.71 0.00 4.85
1876 1951 5.333645 GGAACTTACAGCAGATGCATATTCG 60.334 44.000 7.68 0.00 45.16 3.34
1910 1985 9.488762 TTTGGATCCGATGGAGTAGTATATATT 57.511 33.333 7.39 0.00 34.05 1.28
1919 1994 6.126883 ACACTTATTTTGGATCCGATGGAGTA 60.127 38.462 7.39 0.00 34.05 2.59
1920 1995 5.126067 CACTTATTTTGGATCCGATGGAGT 58.874 41.667 7.39 4.10 34.05 3.85
1921 1996 5.126067 ACACTTATTTTGGATCCGATGGAG 58.874 41.667 7.39 3.46 34.05 3.86
1922 1997 5.110814 ACACTTATTTTGGATCCGATGGA 57.889 39.130 7.39 0.00 35.55 3.41
1923 1998 4.024893 CGACACTTATTTTGGATCCGATGG 60.025 45.833 7.39 2.44 0.00 3.51
1924 1999 4.552767 GCGACACTTATTTTGGATCCGATG 60.553 45.833 7.39 1.75 0.00 3.84
1925 2000 3.560068 GCGACACTTATTTTGGATCCGAT 59.440 43.478 7.39 3.85 0.00 4.18
1926 2001 2.933906 GCGACACTTATTTTGGATCCGA 59.066 45.455 7.39 1.27 0.00 4.55
1927 2002 2.675844 TGCGACACTTATTTTGGATCCG 59.324 45.455 7.39 0.00 0.00 4.18
1928 2003 3.689649 ACTGCGACACTTATTTTGGATCC 59.310 43.478 4.20 4.20 0.00 3.36
1929 2004 4.946784 ACTGCGACACTTATTTTGGATC 57.053 40.909 0.00 0.00 0.00 3.36
1930 2005 5.705609 AAACTGCGACACTTATTTTGGAT 57.294 34.783 0.00 0.00 0.00 3.41
1931 2006 5.066634 TCAAAACTGCGACACTTATTTTGGA 59.933 36.000 7.24 0.00 37.53 3.53
1932 2007 5.277825 TCAAAACTGCGACACTTATTTTGG 58.722 37.500 7.24 0.00 37.53 3.28
1933 2008 6.472163 AGTTCAAAACTGCGACACTTATTTTG 59.528 34.615 0.00 0.00 41.01 2.44
1934 2009 6.560711 AGTTCAAAACTGCGACACTTATTTT 58.439 32.000 0.00 0.00 41.01 1.82
1935 2010 6.131544 AGTTCAAAACTGCGACACTTATTT 57.868 33.333 0.00 0.00 41.01 1.40
1936 2011 5.751243 AGTTCAAAACTGCGACACTTATT 57.249 34.783 0.00 0.00 41.01 1.40
1937 2012 6.704493 TCTTAGTTCAAAACTGCGACACTTAT 59.296 34.615 2.65 0.00 42.84 1.73
1938 2013 6.044046 TCTTAGTTCAAAACTGCGACACTTA 58.956 36.000 2.65 0.00 42.84 2.24
1939 2014 4.873827 TCTTAGTTCAAAACTGCGACACTT 59.126 37.500 2.65 0.00 42.84 3.16
1940 2015 4.439057 TCTTAGTTCAAAACTGCGACACT 58.561 39.130 2.65 0.00 42.84 3.55
1941 2016 4.789095 TCTTAGTTCAAAACTGCGACAC 57.211 40.909 2.65 0.00 42.84 3.67
1942 2017 5.277779 CCAATCTTAGTTCAAAACTGCGACA 60.278 40.000 2.65 0.00 42.84 4.35
1943 2018 5.147162 CCAATCTTAGTTCAAAACTGCGAC 58.853 41.667 2.65 0.00 42.84 5.19
1944 2019 4.215399 CCCAATCTTAGTTCAAAACTGCGA 59.785 41.667 2.65 0.16 42.84 5.10
1945 2020 4.023193 ACCCAATCTTAGTTCAAAACTGCG 60.023 41.667 2.65 0.00 42.84 5.18
1946 2021 5.453567 ACCCAATCTTAGTTCAAAACTGC 57.546 39.130 2.65 0.00 42.84 4.40
1947 2022 7.038154 TGAACCCAATCTTAGTTCAAAACTG 57.962 36.000 2.51 0.00 45.02 3.16
1953 2028 5.319043 AGGTTGAACCCAATCTTAGTTCA 57.681 39.130 11.41 0.90 40.69 3.18
1960 2035 3.330701 TGAGCTAAGGTTGAACCCAATCT 59.669 43.478 11.41 3.64 45.18 2.40
1961 2036 3.686016 TGAGCTAAGGTTGAACCCAATC 58.314 45.455 11.41 3.44 39.75 2.67
1962 2037 3.806949 TGAGCTAAGGTTGAACCCAAT 57.193 42.857 11.41 0.19 39.75 3.16
1963 2038 3.586470 TTGAGCTAAGGTTGAACCCAA 57.414 42.857 11.41 4.07 39.75 4.12
1964 2039 3.586470 TTTGAGCTAAGGTTGAACCCA 57.414 42.857 11.41 0.00 39.75 4.51
1965 2040 3.889538 AGTTTTGAGCTAAGGTTGAACCC 59.110 43.478 11.41 0.00 39.75 4.11
1966 2041 4.793028 GCAGTTTTGAGCTAAGGTTGAACC 60.793 45.833 6.16 6.16 38.99 3.62
1967 2042 4.290969 GCAGTTTTGAGCTAAGGTTGAAC 58.709 43.478 0.00 0.00 0.00 3.18
1968 2043 3.003275 CGCAGTTTTGAGCTAAGGTTGAA 59.997 43.478 0.00 0.00 0.00 2.69
1969 2044 2.548057 CGCAGTTTTGAGCTAAGGTTGA 59.452 45.455 0.00 0.00 0.00 3.18
1970 2045 2.548057 TCGCAGTTTTGAGCTAAGGTTG 59.452 45.455 0.00 0.00 0.00 3.77
1971 2046 2.548480 GTCGCAGTTTTGAGCTAAGGTT 59.452 45.455 0.00 0.00 0.00 3.50
1972 2047 2.143925 GTCGCAGTTTTGAGCTAAGGT 58.856 47.619 0.00 0.00 0.00 3.50
1973 2048 2.096218 GTGTCGCAGTTTTGAGCTAAGG 60.096 50.000 0.00 0.00 0.00 2.69
1974 2049 2.802816 AGTGTCGCAGTTTTGAGCTAAG 59.197 45.455 0.00 0.00 0.00 2.18
1975 2050 2.833794 AGTGTCGCAGTTTTGAGCTAA 58.166 42.857 0.00 0.00 0.00 3.09
1976 2051 2.526304 AGTGTCGCAGTTTTGAGCTA 57.474 45.000 0.00 0.00 0.00 3.32
1977 2052 1.668419 AAGTGTCGCAGTTTTGAGCT 58.332 45.000 0.00 0.00 0.00 4.09
1978 2053 3.813529 ATAAGTGTCGCAGTTTTGAGC 57.186 42.857 5.46 0.00 0.00 4.26
1979 2054 5.399301 CCAAAATAAGTGTCGCAGTTTTGAG 59.601 40.000 16.09 7.82 38.26 3.02
1980 2055 5.066634 TCCAAAATAAGTGTCGCAGTTTTGA 59.933 36.000 16.09 6.08 38.26 2.69
1981 2056 5.277825 TCCAAAATAAGTGTCGCAGTTTTG 58.722 37.500 5.46 11.07 36.70 2.44
1982 2057 5.508200 TCCAAAATAAGTGTCGCAGTTTT 57.492 34.783 5.46 0.00 0.00 2.43
1983 2058 5.616866 CGATCCAAAATAAGTGTCGCAGTTT 60.617 40.000 5.46 0.00 0.00 2.66
1984 2059 4.142902 CGATCCAAAATAAGTGTCGCAGTT 60.143 41.667 5.48 5.48 0.00 3.16
1985 2060 3.370978 CGATCCAAAATAAGTGTCGCAGT 59.629 43.478 0.00 0.00 0.00 4.40
1986 2061 3.242413 CCGATCCAAAATAAGTGTCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
1987 2062 2.675844 CCGATCCAAAATAAGTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
1988 2063 2.933906 TCCGATCCAAAATAAGTGTCGC 59.066 45.455 0.00 0.00 0.00 5.19
1989 2064 3.555956 CCTCCGATCCAAAATAAGTGTCG 59.444 47.826 0.00 0.00 0.00 4.35
1990 2065 3.877508 CCCTCCGATCCAAAATAAGTGTC 59.122 47.826 0.00 0.00 0.00 3.67
1991 2066 3.265995 ACCCTCCGATCCAAAATAAGTGT 59.734 43.478 0.00 0.00 0.00 3.55
1992 2067 3.627577 CACCCTCCGATCCAAAATAAGTG 59.372 47.826 0.00 0.00 0.00 3.16
1993 2068 3.265995 ACACCCTCCGATCCAAAATAAGT 59.734 43.478 0.00 0.00 0.00 2.24
1994 2069 3.886123 ACACCCTCCGATCCAAAATAAG 58.114 45.455 0.00 0.00 0.00 1.73
1995 2070 4.685030 GCTACACCCTCCGATCCAAAATAA 60.685 45.833 0.00 0.00 0.00 1.40
1996 2071 3.181458 GCTACACCCTCCGATCCAAAATA 60.181 47.826 0.00 0.00 0.00 1.40
1997 2072 2.421529 GCTACACCCTCCGATCCAAAAT 60.422 50.000 0.00 0.00 0.00 1.82
1998 2073 1.065709 GCTACACCCTCCGATCCAAAA 60.066 52.381 0.00 0.00 0.00 2.44
1999 2074 0.539986 GCTACACCCTCCGATCCAAA 59.460 55.000 0.00 0.00 0.00 3.28
2000 2075 0.616395 TGCTACACCCTCCGATCCAA 60.616 55.000 0.00 0.00 0.00 3.53
2001 2076 1.001120 TGCTACACCCTCCGATCCA 59.999 57.895 0.00 0.00 0.00 3.41
2002 2077 1.442148 GTGCTACACCCTCCGATCC 59.558 63.158 0.00 0.00 0.00 3.36
2003 2078 1.065928 CGTGCTACACCCTCCGATC 59.934 63.158 0.00 0.00 0.00 3.69
2004 2079 0.394762 TACGTGCTACACCCTCCGAT 60.395 55.000 0.00 0.00 0.00 4.18
2005 2080 0.608856 TTACGTGCTACACCCTCCGA 60.609 55.000 0.00 0.00 0.00 4.55
2006 2081 0.458669 ATTACGTGCTACACCCTCCG 59.541 55.000 0.00 0.00 0.00 4.63
2007 2082 2.685850 AATTACGTGCTACACCCTCC 57.314 50.000 0.00 0.00 0.00 4.30
2008 2083 4.752146 AGTAAATTACGTGCTACACCCTC 58.248 43.478 0.00 0.00 0.00 4.30
2009 2084 4.813750 AGTAAATTACGTGCTACACCCT 57.186 40.909 0.00 0.00 0.00 4.34
2010 2085 6.813152 TCTTAAGTAAATTACGTGCTACACCC 59.187 38.462 0.00 0.00 0.00 4.61
2011 2086 7.816945 TCTTAAGTAAATTACGTGCTACACC 57.183 36.000 0.00 0.00 0.00 4.16
2012 2087 8.919661 AGTTCTTAAGTAAATTACGTGCTACAC 58.080 33.333 0.00 0.00 0.00 2.90
2039 2114 6.842676 AGGAGTTTGAGGAAGTAATTTGAGT 58.157 36.000 0.00 0.00 0.00 3.41
2040 2115 7.065204 GCTAGGAGTTTGAGGAAGTAATTTGAG 59.935 40.741 0.00 0.00 0.00 3.02
2041 2116 6.879458 GCTAGGAGTTTGAGGAAGTAATTTGA 59.121 38.462 0.00 0.00 0.00 2.69
2042 2117 6.881602 AGCTAGGAGTTTGAGGAAGTAATTTG 59.118 38.462 0.00 0.00 0.00 2.32
2043 2118 7.021998 AGCTAGGAGTTTGAGGAAGTAATTT 57.978 36.000 0.00 0.00 0.00 1.82
2044 2119 6.628644 AGCTAGGAGTTTGAGGAAGTAATT 57.371 37.500 0.00 0.00 0.00 1.40
2045 2120 6.213600 TCAAGCTAGGAGTTTGAGGAAGTAAT 59.786 38.462 2.08 0.00 39.88 1.89
2046 2121 5.542635 TCAAGCTAGGAGTTTGAGGAAGTAA 59.457 40.000 2.08 0.00 39.88 2.24
2049 2124 4.543590 TCAAGCTAGGAGTTTGAGGAAG 57.456 45.455 2.08 0.00 39.88 3.46
2068 2143 0.843309 TCCTGCCACAAAACTCCTCA 59.157 50.000 0.00 0.00 0.00 3.86
2072 2147 4.639135 GGATATTCCTGCCACAAAACTC 57.361 45.455 0.00 0.00 32.53 3.01
2110 2185 4.021981 AGGCAAGCCAAGTCATAAAAAGAC 60.022 41.667 14.40 0.00 38.92 3.01
2149 2224 5.452255 AGTGAGGTTAGGTCGGATGTATAA 58.548 41.667 0.00 0.00 0.00 0.98
2219 2294 6.430000 GCCAAGTCTAGTTTTTGTCTAATGGA 59.570 38.462 0.00 0.00 0.00 3.41
2224 2299 6.827727 AGAAGCCAAGTCTAGTTTTTGTCTA 58.172 36.000 0.00 0.00 0.00 2.59
2230 2305 4.457257 GCATGAGAAGCCAAGTCTAGTTTT 59.543 41.667 0.00 0.00 0.00 2.43
2249 2324 3.631145 ACAGTTTGTACAAGCAGCATG 57.369 42.857 22.32 14.49 40.87 4.06
2257 2332 5.585445 ACGTGGTTATGAACAGTTTGTACAA 59.415 36.000 3.59 3.59 0.00 2.41
2269 2344 6.438259 TCAAACAAAGAACGTGGTTATGAA 57.562 33.333 0.00 0.00 0.00 2.57
2270 2345 6.627395 ATCAAACAAAGAACGTGGTTATGA 57.373 33.333 0.00 0.00 0.00 2.15
2277 2352 8.910666 TGCATTAATAATCAAACAAAGAACGTG 58.089 29.630 0.00 0.00 0.00 4.49
2300 2375 4.471025 TCTCTATCATCTGAAAACCCTGCA 59.529 41.667 0.00 0.00 0.00 4.41
2301 2376 5.028549 TCTCTATCATCTGAAAACCCTGC 57.971 43.478 0.00 0.00 0.00 4.85
2347 2422 9.522804 GTGAACACAAAAATATTGAACCTGTAA 57.477 29.630 0.00 0.00 0.00 2.41
2357 2432 7.925993 TGAGAAGACGTGAACACAAAAATATT 58.074 30.769 0.00 0.00 0.00 1.28
2358 2433 7.490962 TGAGAAGACGTGAACACAAAAATAT 57.509 32.000 0.00 0.00 0.00 1.28
2393 2468 8.871862 GCATAATTGTCATTTAAAACTGCATGA 58.128 29.630 0.00 0.00 0.00 3.07
2440 2515 8.938906 CAACAAAAGCCTGCTCAAAATTAATAT 58.061 29.630 0.00 0.00 0.00 1.28
2443 2518 5.526846 CCAACAAAAGCCTGCTCAAAATTAA 59.473 36.000 0.00 0.00 0.00 1.40
2446 2521 3.134442 TCCAACAAAAGCCTGCTCAAAAT 59.866 39.130 0.00 0.00 0.00 1.82
2532 2607 8.589335 AGTTATATGTAAGTAACCAGCGATTG 57.411 34.615 0.00 0.00 32.54 2.67
2536 2611 8.965172 CAGTAAGTTATATGTAAGTAACCAGCG 58.035 37.037 0.00 0.00 32.54 5.18
2545 2620 7.786178 TGGCAAGCAGTAAGTTATATGTAAG 57.214 36.000 0.00 0.00 0.00 2.34
2546 2621 8.568676 TTTGGCAAGCAGTAAGTTATATGTAA 57.431 30.769 0.00 0.00 0.00 2.41
2548 2623 7.461182 TTTTGGCAAGCAGTAAGTTATATGT 57.539 32.000 0.00 0.00 0.00 2.29
2549 2624 8.931385 AATTTTGGCAAGCAGTAAGTTATATG 57.069 30.769 0.00 0.00 0.00 1.78
2564 2639 5.738909 CCCACATGGTATAAATTTTGGCAA 58.261 37.500 0.00 0.00 0.00 4.52
2566 2641 4.126437 GCCCACATGGTATAAATTTTGGC 58.874 43.478 0.00 0.00 36.04 4.52
2594 2669 3.539604 GCTAGAACAGGCACAGATGAAT 58.460 45.455 0.00 0.00 0.00 2.57
2673 2748 5.585820 TGATGTTGGAATGAATGGTCATG 57.414 39.130 0.00 0.00 44.02 3.07
2676 2751 7.910441 AATTTTGATGTTGGAATGAATGGTC 57.090 32.000 0.00 0.00 0.00 4.02
2706 2781 0.881118 TCCAATTTGAGGCGCTTCAC 59.119 50.000 23.01 4.26 0.00 3.18
2712 2787 4.337555 AGATCTTCAATCCAATTTGAGGCG 59.662 41.667 0.00 0.00 36.97 5.52
2792 2867 3.056607 AGAAAATTTGCCGGTGGAGATTG 60.057 43.478 1.90 0.00 0.00 2.67
2793 2868 3.165071 AGAAAATTTGCCGGTGGAGATT 58.835 40.909 1.90 0.00 0.00 2.40
2834 2911 8.323140 GTGAACAAGTGATTTCAAACTCATTTG 58.677 33.333 13.24 13.24 45.67 2.32
2861 2938 6.815089 ACCTGCAACATGAGAAAAACATAAA 58.185 32.000 0.00 0.00 0.00 1.40
2938 3018 2.942804 TGCCCACTGAACAGATTTCAA 58.057 42.857 8.87 0.00 0.00 2.69
3061 3141 3.994392 ACATGTCCAAGTAACACACGATC 59.006 43.478 0.00 0.00 0.00 3.69
3087 3177 4.083271 GCACAGAAAGTACCCAGAATTGAC 60.083 45.833 0.00 0.00 0.00 3.18
3097 3187 4.034048 CCATAACATCGCACAGAAAGTACC 59.966 45.833 0.00 0.00 0.00 3.34
3110 3200 4.212004 CCTGCATGTACTTCCATAACATCG 59.788 45.833 0.00 0.00 31.60 3.84
3137 3227 7.071414 GCATGCTTTGAATTAAACTGAAAACC 58.929 34.615 11.37 0.00 0.00 3.27
3157 3247 2.945447 TTCAGCTGTTTATGGCATGC 57.055 45.000 14.67 9.90 0.00 4.06
3217 3307 3.300852 TGCAATGTCAAAACGCATGAT 57.699 38.095 0.00 0.00 0.00 2.45
3236 3326 6.700960 TGTTCTTGCTTTGTTGGATTTACATG 59.299 34.615 0.00 0.00 0.00 3.21
3305 3397 9.373450 AGTTGACTGAATCTCATATACCTACAT 57.627 33.333 0.00 0.00 0.00 2.29
3306 3398 8.633561 CAGTTGACTGAATCTCATATACCTACA 58.366 37.037 5.19 0.00 46.59 2.74
3342 3434 9.395068 ACCCCCATTTAACCTAGAAAATAAAAA 57.605 29.630 0.00 0.00 0.00 1.94
3345 3437 7.616542 GTGACCCCCATTTAACCTAGAAAATAA 59.383 37.037 0.00 0.00 0.00 1.40
3347 3439 5.955959 GTGACCCCCATTTAACCTAGAAAAT 59.044 40.000 0.00 0.00 0.00 1.82
3353 3445 2.987437 TGTGTGACCCCCATTTAACCTA 59.013 45.455 0.00 0.00 0.00 3.08
3439 3531 2.727123 TTGTTCTTGGAACCTGCTCA 57.273 45.000 7.77 0.00 0.00 4.26
3592 3684 8.008513 ACTTAACAGACTCTTTCTACAAGACA 57.991 34.615 0.00 0.00 31.12 3.41
3644 3841 6.405065 CCAAACCTGATGACAGATAAATGTGG 60.405 42.308 0.00 0.00 46.03 4.17
3659 3856 0.035056 CTCCCGAAGCCAAACCTGAT 60.035 55.000 0.00 0.00 0.00 2.90
3675 3872 4.409247 ACCACATTTCCTACTATGGTCTCC 59.591 45.833 0.00 0.00 35.53 3.71
3702 3899 5.481824 ACAATCACAGACTGTCTCATTCCTA 59.518 40.000 7.49 0.00 0.00 2.94
3732 3929 2.900106 GCTGCAGGTTGGGTCCTCT 61.900 63.158 17.12 0.00 35.37 3.69
3771 3969 7.093068 TGGAGAGGCATACTTCTACAACAAATA 60.093 37.037 0.00 0.00 0.00 1.40
3782 3980 5.767168 AGCAAAATATGGAGAGGCATACTTC 59.233 40.000 0.00 0.00 0.00 3.01
3792 3990 7.408756 ACAAAGCATAAGCAAAATATGGAGA 57.591 32.000 0.00 0.00 45.49 3.71
3797 3995 7.820872 AGCAAGAACAAAGCATAAGCAAAATAT 59.179 29.630 0.00 0.00 45.49 1.28
3798 3996 7.153985 AGCAAGAACAAAGCATAAGCAAAATA 58.846 30.769 0.00 0.00 45.49 1.40
3799 3997 5.993441 AGCAAGAACAAAGCATAAGCAAAAT 59.007 32.000 0.00 0.00 45.49 1.82
3809 4007 6.579666 ATCTATTCAAGCAAGAACAAAGCA 57.420 33.333 0.00 0.00 0.00 3.91
3906 4104 2.029200 TGCGCCAATCACAAATTGACAT 60.029 40.909 4.18 0.00 36.92 3.06
3994 4192 2.672098 AGACTCCACAGGATATCGCTT 58.328 47.619 0.00 0.00 0.00 4.68
4011 4209 6.091718 CCTCAGCTAAAGGGTTAGATAGAC 57.908 45.833 6.45 0.00 39.36 2.59
4094 4378 0.905357 GACATCCTACAGCACCCAGT 59.095 55.000 0.00 0.00 0.00 4.00
4095 4379 1.137872 GAGACATCCTACAGCACCCAG 59.862 57.143 0.00 0.00 0.00 4.45
4110 4394 3.012959 ACCTTCCTTATCCTCAGGAGACA 59.987 47.826 0.00 0.00 41.66 3.41
4177 4461 4.456280 ACAATGTCGACAGAGCTTCATA 57.544 40.909 24.41 0.00 0.00 2.15
4187 4471 1.011968 GCGTGCCTACAATGTCGACA 61.012 55.000 22.48 22.48 0.00 4.35
4200 4484 2.031157 GGTACATCAATTATGGCGTGCC 60.031 50.000 3.30 3.30 40.16 5.01
4201 4485 2.878406 AGGTACATCAATTATGGCGTGC 59.122 45.455 0.00 0.00 40.16 5.34
4202 4486 4.126437 TCAGGTACATCAATTATGGCGTG 58.874 43.478 0.00 0.00 40.16 5.34
4203 4487 4.415881 TCAGGTACATCAATTATGGCGT 57.584 40.909 0.00 0.00 40.16 5.68
4204 4488 4.996758 TCATCAGGTACATCAATTATGGCG 59.003 41.667 0.00 0.00 40.16 5.69
4205 4489 8.743085 ATATCATCAGGTACATCAATTATGGC 57.257 34.615 0.00 0.00 40.16 4.40
4206 4490 9.895138 TGATATCATCAGGTACATCAATTATGG 57.105 33.333 0.00 0.00 35.59 2.74
4209 4493 9.933723 CTGTGATATCATCAGGTACATCAATTA 57.066 33.333 19.43 0.00 40.53 1.40
4210 4494 7.881751 CCTGTGATATCATCAGGTACATCAATT 59.118 37.037 28.44 0.00 40.53 2.32
4219 4503 3.311990 TGAGCCTGTGATATCATCAGGT 58.688 45.455 32.30 25.14 42.17 4.00
4355 4639 1.741770 CTGACGCCAAGGCACCTAC 60.742 63.158 12.19 0.00 42.06 3.18
4576 4860 9.352784 GTATCTATTCTTCTTGATTCTCCGATG 57.647 37.037 0.00 0.00 0.00 3.84
4588 4872 8.260818 TGCTGCAAAGTAGTATCTATTCTTCTT 58.739 33.333 0.00 0.00 0.00 2.52
4632 5018 1.135575 GCTGTGCAAATGAGGCTGTAC 60.136 52.381 0.00 0.00 0.00 2.90
4684 5086 7.363705 CCCTGTTTTATGTCCTTATCAAATGCA 60.364 37.037 0.00 0.00 0.00 3.96
4733 5135 1.739466 GCCATTCGCAATTCTCTGTCA 59.261 47.619 0.00 0.00 37.47 3.58
4747 5149 2.421424 GACAGTGGAATCAGTGCCATTC 59.579 50.000 0.00 0.00 45.69 2.67
4771 5173 4.017958 TCACACTCTCTTCTGACCCTATCT 60.018 45.833 0.00 0.00 0.00 1.98
4853 5337 3.625649 ACAGGAAGAAGGATCAGCTTC 57.374 47.619 11.03 11.03 37.80 3.86
4875 5359 4.442753 GGCTAAGGAGAGAGAGGTGATTTG 60.443 50.000 0.00 0.00 0.00 2.32
4907 5391 1.399714 CAGTACGGCACAGGGATCTA 58.600 55.000 0.00 0.00 0.00 1.98
4926 5410 3.188786 GTCGACACGGATGGCAGC 61.189 66.667 11.55 0.00 30.51 5.25
4955 5447 1.949525 GAGGCTCAGAACAAGCACAAA 59.050 47.619 10.25 0.00 41.66 2.83
4985 5477 8.738199 TCTAACTTCACTCATTTTACTGTACG 57.262 34.615 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.