AutoCloner

Multiple sequence alignment - TraesCS4D01G147100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G147100	chr4D	100.000	5771	0	0	1	5771	138265356	138259586	0.000000e+00	10658.0
1	TraesCS4D01G147100	chr4D	76.623	308	54	14	5272	5574	484722034	484722328	2.780000e-33	154.0
2	TraesCS4D01G147100	chrUn	96.536	3349	60	27	907	4245	295018564	295015262	0.000000e+00	5491.0
3	TraesCS4D01G147100	chrUn	93.575	1354	48	16	4287	5612	295015261	295013919	0.000000e+00	1982.0
4	TraesCS4D01G147100	chrUn	96.374	855	25	5	1	851	55792502	55791650	0.000000e+00	1402.0
5	TraesCS4D01G147100	chrUn	94.690	113	6	0	5641	5753	349420064	349419952	5.940000e-40	176.0
6	TraesCS4D01G147100	chrUn	97.959	49	1	0	868	916	295018655	295018607	1.030000e-12	86.1
7	TraesCS4D01G147100	chr4A	97.749	2932	49	5	2204	5130	418130586	418133505	0.000000e+00	5033.0
8	TraesCS4D01G147100	chr4A	96.281	1479	26	12	735	2209	418124842	418126295	0.000000e+00	2399.0
9	TraesCS4D01G147100	chr4A	95.225	754	31	5	1	752	418122613	418123363	0.000000e+00	1188.0
10	TraesCS4D01G147100	chr4A	88.596	570	38	4	5178	5745	418133529	418134073	0.000000e+00	667.0
11	TraesCS4D01G147100	chr4A	93.939	66	2	2	5171	5236	161260593	161260656	1.320000e-16	99.0
12	TraesCS4D01G147100	chr4A	92.754	69	3	2	5168	5236	683639972	683639906	1.320000e-16	99.0
13	TraesCS4D01G147100	chr6A	83.483	333	35	9	5273	5602	614467860	614468175	5.660000e-75	292.0
14	TraesCS4D01G147100	chr6A	89.189	74	6	2	5175	5248	575490488	575490417	2.210000e-14	91.6
15	TraesCS4D01G147100	chr5D	79.241	395	60	12	5276	5668	303755470	303755844	7.420000e-64	255.0
16	TraesCS4D01G147100	chr6D	82.629	213	21	8	626	823	390869228	390869017	2.140000e-39	174.0
17	TraesCS4D01G147100	chr6D	87.770	139	13	2	626	761	390866727	390866864	5.990000e-35	159.0
18	TraesCS4D01G147100	chr6B	89.130	138	11	2	627	761	369806777	369806641	9.940000e-38	169.0
19	TraesCS4D01G147100	chr6B	92.208	77	3	2	1743	1819	384178493	384178566	7.910000e-19	106.0
20	TraesCS4D01G147100	chr7B	87.075	147	17	1	617	761	275457690	275457836	1.290000e-36	165.0
21	TraesCS4D01G147100	chr7B	81.604	212	24	8	626	823	275460784	275460574	1.660000e-35	161.0
22	TraesCS4D01G147100	chr7A	87.075	147	15	3	618	761	323437834	323437689	4.630000e-36	163.0
23	TraesCS4D01G147100	chr3D	82.653	196	18	11	614	795	545777104	545777297	5.990000e-35	159.0
24	TraesCS4D01G147100	chr3D	83.140	172	22	6	5273	5438	477241194	477241024	3.600000e-32	150.0
25	TraesCS4D01G147100	chr1A	82.857	175	19	11	5284	5454	380294799	380294966	4.660000e-31	147.0
26	TraesCS4D01G147100	chr1A	89.189	74	7	1	5175	5248	415299429	415299501	2.210000e-14	91.6
27	TraesCS4D01G147100	chr1A	92.157	51	4	0	1495	1545	371245415	371245365	8.020000e-09	73.1
28	TraesCS4D01G147100	chr5A	80.220	182	28	6	5272	5449	3809859	3810036	4.690000e-26	130.0
29	TraesCS4D01G147100	chr1D	84.000	125	17	3	5279	5402	335994685	335994807	3.650000e-22	117.0
30	TraesCS4D01G147100	chr2B	93.506	77	2	2	1743	1819	198423699	198423772	1.700000e-20	111.0
31	TraesCS4D01G147100	chr2B	88.889	54	6	0	1493	1546	514395821	514395874	3.730000e-07	67.6
32	TraesCS4D01G147100	chr2B	85.246	61	7	2	1493	1552	47692651	47692710	1.740000e-05	62.1
33	TraesCS4D01G147100	chr2B	85.246	61	7	2	1493	1552	47698070	47698129	1.740000e-05	62.1
34	TraesCS4D01G147100	chr3A	93.151	73	3	2	5175	5247	40850584	40850654	7.910000e-19	106.0
35	TraesCS4D01G147100	chr7D	95.238	63	2	1	5174	5236	66408571	66408510	1.320000e-16	99.0
36	TraesCS4D01G147100	chr7D	90.566	53	5	0	1493	1545	267124112	267124164	2.880000e-08	71.3
37	TraesCS4D01G147100	chr2D	88.462	78	7	2	5171	5248	534410662	534410587	6.160000e-15	93.5
38	TraesCS4D01G147100	chr4B	92.453	53	4	0	1493	1545	621511635	621511687	6.200000e-10	76.8
39	TraesCS4D01G147100	chr2A	93.617	47	3	0	1499	1545	171075528	171075482	2.880000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G147100	chr4D	138259586	138265356	5770	True	10658.0	10658	100.000000	1	5771	1	chr4D.!!$R1	5770
1	TraesCS4D01G147100	chrUn	295013919	295018655	4736	True	2519.7	5491	96.023333	868	5612	3	chrUn.!!$R3	4744
2	TraesCS4D01G147100	chrUn	55791650	55792502	852	True	1402.0	1402	96.374000	1	851	1	chrUn.!!$R1	850
3	TraesCS4D01G147100	chr4A	418130586	418134073	3487	False	2850.0	5033	93.172500	2204	5745	2	chr4A.!!$F3	3541
4	TraesCS4D01G147100	chr4A	418122613	418126295	3682	False	1793.5	2399	95.753000	1	2209	2	chr4A.!!$F2	2208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
863	2369	0.034337	TTACCGGTGCTCTTGTCCAC	59.966	55.000	19.93	0.00	4.02	F
2214	3779	0.249489	CTGACGGTAGGTATGCCAGC	60.249	60.000	1.54	37.19	4.85	F
2512	4077	0.108138	AAGAGTGCCATACTGCGGAC	60.108	55.000	0.00	40.53	4.79	F
3575	5156	5.308825	CAGAATGTTAACAAGGTGGAGACT	58.691	41.667	13.23	0.00	3.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
2262	3827	5.112686	GGAAGCAGAAGTACCTAACATGAG	58.887	45.833	0.00	2.90	R
3575	5156	6.359804	AGGCTTGTGAATAAGATCAATAGCA	58.640	36.000	38.64	3.49	R
4178	5759	6.699204	GTGTATTCAGTATCACCACTCAGATG	59.301	42.308	0.00	2.90	R
5261	6867	0.249657	GCCGCTTCCGAGATGAGATT	60.250	55.000	36.29	2.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
227	229	9.942850	ACAATTTAGGGTTTTGAATAATTCCAG	57.057	29.630	0.00	0.00	0.00	3.86
228	230	9.942850	CAATTTAGGGTTTTGAATAATTCCAGT	57.057	29.630	0.00	0.00	0.00	4.00
244	246	6.610075	ATTCCAGTGTTTTATTTGAGGCAT	57.390	33.333	0.00	0.00	0.00	4.40
417	423	7.175641	TGTGACAAAATTGGTTGGTCAAAATTT	59.824	29.630	0.00	0.00	34.54	1.82
615	621	2.202395	ATGCAAGCCTTGGCGTGTT	61.202	52.632	23.85	12.48	0.00	3.32
820	2326	2.381911	CATTGGGCCAAGTCAATAGCT	58.618	47.619	25.16	0.72	32.92	3.32
860	2366	1.404315	CCTCTTACCGGTGCTCTTGTC	60.404	57.143	19.93	0.00	0.00	3.18
861	2367	0.606604	TCTTACCGGTGCTCTTGTCC	59.393	55.000	19.93	0.00	0.00	4.02
862	2368	0.320374	CTTACCGGTGCTCTTGTCCA	59.680	55.000	19.93	0.00	0.00	4.02
863	2369	0.034337	TTACCGGTGCTCTTGTCCAC	59.966	55.000	19.93	0.00	0.00	4.02
864	2370	2.149803	TACCGGTGCTCTTGTCCACG	62.150	60.000	19.93	0.00	32.85	4.94
865	2371	2.738521	CGGTGCTCTTGTCCACGG	60.739	66.667	0.00	0.00	32.85	4.94
866	2372	3.050275	GGTGCTCTTGTCCACGGC	61.050	66.667	0.00	0.00	32.85	5.68
910	2468	1.067693	TCGTGTGCATAGCTGAAACG	58.932	50.000	0.00	0.00	0.00	3.60
1070	2628	1.517832	CATCACCACCTCTCGTCCC	59.482	63.158	0.00	0.00	0.00	4.46
1391	2949	5.416947	AGAAATGTCGGTATGGTTCTGTAC	58.583	41.667	0.00	0.00	0.00	2.90
1392	2950	5.187186	AGAAATGTCGGTATGGTTCTGTACT	59.813	40.000	0.00	0.00	0.00	2.73
1393	2951	5.416271	AATGTCGGTATGGTTCTGTACTT	57.584	39.130	0.00	0.00	0.00	2.24
1884	3446	2.227388	CTCGAGTGCCATTTGCTTTTCT	59.773	45.455	3.62	0.00	42.00	2.52
1894	3456	5.619757	GCCATTTGCTTTTCTTTATTTGGGC	60.620	40.000	0.00	0.00	36.87	5.36
1924	3486	4.569943	ACGTTTGTGCATAGACATCTTCT	58.430	39.130	5.02	0.00	38.51	2.85
2034	3597	8.800370	AAACAAAAGGTTGGTATGTTTCAATT	57.200	26.923	0.00	0.00	39.31	2.32
2036	3599	8.432110	ACAAAAGGTTGGTATGTTTCAATTTC	57.568	30.769	0.00	0.00	39.22	2.17
2124	3689	4.219288	GCAAAAAGAGAATGGTGATGACCT	59.781	41.667	2.11	0.00	43.58	3.85
2214	3779	0.249489	CTGACGGTAGGTATGCCAGC	60.249	60.000	1.54	0.00	37.19	4.85
2262	3827	3.003480	ACTTCTCATTGCGCTTACCTTC	58.997	45.455	9.73	0.00	0.00	3.46
2379	3944	6.611642	TCCTATCAACTTATCTAGGCAGTTGT	59.388	38.462	20.11	13.88	45.16	3.32
2512	4077	0.108138	AAGAGTGCCATACTGCGGAC	60.108	55.000	0.00	0.00	40.53	4.79
2713	4278	6.717289	TGTTGTTTGGTCTAGGTAATAGCAT	58.283	36.000	0.00	0.00	0.00	3.79
2714	4279	7.853299	TGTTGTTTGGTCTAGGTAATAGCATA	58.147	34.615	0.00	0.00	0.00	3.14
2715	4280	8.491134	TGTTGTTTGGTCTAGGTAATAGCATAT	58.509	33.333	0.00	0.00	0.00	1.78
2716	4281	9.338622	GTTGTTTGGTCTAGGTAATAGCATATT	57.661	33.333	0.00	0.00	0.00	1.28
2722	4287	9.937876	TGGTCTAGGTAATAGCATATTATAGCT	57.062	33.333	0.00	0.00	44.55	3.32
2825	4400	5.954296	ACCTCAGTTCATCTTTGTTCATG	57.046	39.130	0.00	0.00	0.00	3.07
3575	5156	5.308825	CAGAATGTTAACAAGGTGGAGACT	58.691	41.667	13.23	0.00	0.00	3.24
3747	5328	6.998673	AGCCTTTTAATCTGTGTGTTACTTCT	59.001	34.615	0.00	0.00	0.00	2.85
3948	5529	6.483640	AGTTGAGTTAATCCTTTGTGTGACTC	59.516	38.462	0.00	0.00	34.41	3.36
4194	5775	8.499162	GCAAAATATACATCTGAGTGGTGATAC	58.501	37.037	0.00	0.00	0.00	2.24
4787	6368	5.760253	AGGCATGATCAGTTTAACTATTCCG	59.240	40.000	0.09	0.00	0.00	4.30
4915	6496	1.436195	TTCCTTGCGTGCACACACTC	61.436	55.000	18.64	0.48	45.10	3.51
5119	6700	2.495669	TGATGTGTCTGCGTGGAATCTA	59.504	45.455	0.00	0.00	0.00	1.98
5130	6711	2.804572	CGTGGAATCTATGCACCAGGAG	60.805	54.545	5.75	0.00	46.76	3.69
5131	6712	1.141657	TGGAATCTATGCACCAGGAGC	59.858	52.381	1.05	1.05	0.00	4.70
5132	6713	1.506493	GAATCTATGCACCAGGAGCG	58.494	55.000	4.22	0.00	33.85	5.03
5247	6853	4.769488	AGTATGATATCAGCGTCACCTCAT	59.231	41.667	11.78	0.00	0.00	2.90
5261	6867	2.234661	CACCTCATGTCAGAAGTAGCCA	59.765	50.000	0.00	0.00	0.00	4.75
5265	6871	4.141756	CCTCATGTCAGAAGTAGCCAATCT	60.142	45.833	0.00	0.00	0.00	2.40
5273	6879	3.320541	AGAAGTAGCCAATCTCATCTCGG	59.679	47.826	0.00	0.00	0.00	4.63
5279	6885	1.495878	CAATCTCATCTCGGAAGCGG	58.504	55.000	0.00	0.00	0.00	5.52
5280	6886	0.249657	AATCTCATCTCGGAAGCGGC	60.250	55.000	0.00	0.00	0.00	6.53
5318	6924	1.153349	GATGAGCCCGGGAGTGAAC	60.153	63.158	29.31	4.69	0.00	3.18
5328	6934	2.028476	CCGGGAGTGAACAGTAACATCA	60.028	50.000	0.00	0.00	0.00	3.07
5400	7007	1.959899	GCTTGAGTGCGTGATGTCCG	61.960	60.000	0.00	0.00	0.00	4.79
5501	7108	5.070770	TGAAAAACAACACTGTTCATGCT	57.929	34.783	0.00	0.00	45.25	3.79
5538	7145	2.677228	CCGCCCTCCTGGAATGTT	59.323	61.111	0.00	0.00	35.39	2.71
5650	7258	0.719465	CCGTGTTACTGTTCATCGGC	59.281	55.000	0.00	0.00	0.00	5.54
5712	7320	0.599558	TTCGATCCCGTCTCGTGTTT	59.400	50.000	0.00	0.00	37.40	2.83
5748	7356	8.665643	TTTTTCTTTGTTTCTCCTACGATACA	57.334	30.769	0.00	0.00	0.00	2.29
5749	7357	8.842358	TTTTCTTTGTTTCTCCTACGATACAT	57.158	30.769	0.00	0.00	0.00	2.29
5750	7358	9.932207	TTTTCTTTGTTTCTCCTACGATACATA	57.068	29.630	0.00	0.00	0.00	2.29
5751	7359	9.582431	TTTCTTTGTTTCTCCTACGATACATAG	57.418	33.333	0.00	0.00	30.93	2.23
5752	7360	7.201145	TCTTTGTTTCTCCTACGATACATAGC	58.799	38.462	0.00	0.00	30.33	2.97
5753	7361	5.449107	TGTTTCTCCTACGATACATAGCC	57.551	43.478	0.00	0.00	0.00	3.93
5754	7362	5.138276	TGTTTCTCCTACGATACATAGCCT	58.862	41.667	0.00	0.00	0.00	4.58
5755	7363	5.009710	TGTTTCTCCTACGATACATAGCCTG	59.990	44.000	0.00	0.00	0.00	4.85
5756	7364	3.082548	TCTCCTACGATACATAGCCTGC	58.917	50.000	0.00	0.00	0.00	4.85
5757	7365	2.164624	CTCCTACGATACATAGCCTGCC	59.835	54.545	0.00	0.00	0.00	4.85
5758	7366	1.893137	CCTACGATACATAGCCTGCCA	59.107	52.381	0.00	0.00	0.00	4.92
5759	7367	2.094494	CCTACGATACATAGCCTGCCAG	60.094	54.545	0.00	0.00	0.00	4.85
5760	7368	0.034059	ACGATACATAGCCTGCCAGC	59.966	55.000	0.00	0.00	0.00	4.85
5761	7369	0.671781	CGATACATAGCCTGCCAGCC	60.672	60.000	0.00	0.00	0.00	4.85
5762	7370	0.689623	GATACATAGCCTGCCAGCCT	59.310	55.000	0.00	0.00	0.00	4.58
5763	7371	0.399454	ATACATAGCCTGCCAGCCTG	59.601	55.000	0.00	0.00	0.00	4.85
5764	7372	0.982852	TACATAGCCTGCCAGCCTGT	60.983	55.000	0.00	6.26	34.57	4.00
5765	7373	1.077212	CATAGCCTGCCAGCCTGTT	60.077	57.895	0.00	0.00	0.00	3.16
5766	7374	0.682209	CATAGCCTGCCAGCCTGTTT	60.682	55.000	0.00	0.00	0.00	2.83
5767	7375	0.040204	ATAGCCTGCCAGCCTGTTTT	59.960	50.000	0.00	0.00	0.00	2.43
5768	7376	0.695924	TAGCCTGCCAGCCTGTTTTA	59.304	50.000	0.00	0.00	0.00	1.52
5769	7377	0.895559	AGCCTGCCAGCCTGTTTTAC	60.896	55.000	0.00	0.00	0.00	2.01
5770	7378	0.895559	GCCTGCCAGCCTGTTTTACT	60.896	55.000	0.00	0.00	0.00	2.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
227	229	8.856490	ATCGAAATATGCCTCAAATAAAACAC	57.144	30.769	0.00	0.00	0.00	3.32
417	423	7.276218	GTGGTACGCTATGTATGAAACTACAAA	59.724	37.037	0.00	0.00	35.02	2.83
560	566	3.920412	GCAATAACAAGTGCTACTTTGGC	59.080	43.478	0.00	0.00	36.03	4.52
820	2326	3.782523	AGGAAACAAGAGGATATGGAGCA	59.217	43.478	0.00	0.00	0.00	4.26
864	2370	2.436115	GTACTGAAGCGGTGGGCC	60.436	66.667	0.00	0.00	45.17	5.80
865	2371	1.448013	GAGTACTGAAGCGGTGGGC	60.448	63.158	0.00	0.00	44.05	5.36
866	2372	0.173708	GAGAGTACTGAAGCGGTGGG	59.826	60.000	0.00	0.00	0.00	4.61
910	2468	0.445436	CTGCCTTGAGATTCGTGTGC	59.555	55.000	0.00	0.00	0.00	4.57
1070	2628	2.185004	TTCTTTTCTGCCGAGGAAGG	57.815	50.000	0.00	0.00	0.00	3.46
1161	2719	3.701991	AAAAAGGGGCTGGGAGGT	58.298	55.556	0.00	0.00	0.00	3.85
1391	2949	3.249559	AGTCTGCGCAAAAGAAGAAGAAG	59.750	43.478	13.05	0.00	0.00	2.85
1392	2950	3.002656	CAGTCTGCGCAAAAGAAGAAGAA	59.997	43.478	13.05	0.00	0.00	2.52
1393	2951	2.545526	CAGTCTGCGCAAAAGAAGAAGA	59.454	45.455	13.05	0.00	0.00	2.87
1736	3298	9.163894	AGAAGATACTCATTCATTAGATTCCCA	57.836	33.333	0.00	0.00	0.00	4.37
2045	3610	5.472137	GTGAGCATCCAGTACTTAAACCAAA	59.528	40.000	0.00	0.00	0.00	3.28
2124	3689	6.013984	TGAAGCTATCATCTCAGCCATATCAA	60.014	38.462	0.00	0.00	38.61	2.57
2262	3827	5.112686	GGAAGCAGAAGTACCTAACATGAG	58.887	45.833	0.00	0.00	0.00	2.90
2379	3944	7.496920	TGATAAAACAATTGCACATGGTCAAAA	59.503	29.630	5.05	0.00	0.00	2.44
2450	4015	8.738645	ACTGAATTGGAGAGAATTGGTATAAC	57.261	34.615	0.00	0.00	0.00	1.89
2512	4077	6.129457	GCTGAAGCAATTGTAAGTTAAACACG	60.129	38.462	7.40	0.00	41.59	4.49
2825	4400	6.089150	GGAGTATACTTTCGAACAACTGTGAC	59.911	42.308	6.88	0.00	0.00	3.67
3047	4625	9.065871	CGATCAACATGTTTTTATTCTTCTTCC	57.934	33.333	8.77	0.00	0.00	3.46
3575	5156	6.359804	AGGCTTGTGAATAAGATCAATAGCA	58.640	36.000	0.00	0.00	38.64	3.49
3709	5290	7.384660	CAGATTAAAAGGCTGCACAATAACAAA	59.615	33.333	0.50	0.00	0.00	2.83
4178	5759	6.699204	GTGTATTCAGTATCACCACTCAGATG	59.301	42.308	0.00	0.00	0.00	2.90
4787	6368	2.659428	AGGATATGGCCAGAAGCAAAC	58.341	47.619	13.05	0.00	46.50	2.93
4879	6460	2.293677	AGGAATATGATTCGCGACTCGT	59.706	45.455	22.46	22.46	39.67	4.18
4915	6496	4.778534	AATGACCATGAGCAAACAGAAG	57.221	40.909	0.00	0.00	0.00	2.85
4968	6549	0.896940	CAGGGCAACTGGAGTGCATT	60.897	55.000	0.00	0.00	43.70	3.56
5174	6770	0.409876	TGAGCCCTAGACACACTCCT	59.590	55.000	0.00	0.00	0.00	3.69
5175	6771	1.410882	GATGAGCCCTAGACACACTCC	59.589	57.143	0.00	0.00	0.00	3.85
5247	6853	4.713814	AGATGAGATTGGCTACTTCTGACA	59.286	41.667	0.00	0.00	0.00	3.58
5261	6867	0.249657	GCCGCTTCCGAGATGAGATT	60.250	55.000	0.00	0.00	36.29	2.40
5265	6871	2.501223	AAACGCCGCTTCCGAGATGA	62.501	55.000	0.00	0.00	36.29	2.92
5273	6879	2.126850	GAGCCAAAACGCCGCTTC	60.127	61.111	0.00	0.00	31.61	3.86
5362	6968	6.761312	TCAAGCATCTTTCACCATCAAAAAT	58.239	32.000	0.00	0.00	0.00	1.82
5368	6974	3.427233	GCACTCAAGCATCTTTCACCATC	60.427	47.826	0.00	0.00	0.00	3.51
5369	6975	2.490903	GCACTCAAGCATCTTTCACCAT	59.509	45.455	0.00	0.00	0.00	3.55
5521	7128	1.452108	GAACATTCCAGGAGGGCGG	60.452	63.158	0.00	0.00	36.21	6.13
5538	7145	3.247173	GTGCAAAATTTGGCGATGTTTGA	59.753	39.130	12.85	0.00	32.18	2.69
5547	7154	2.799412	TGATGTTCGTGCAAAATTTGGC	59.201	40.909	10.83	10.83	0.00	4.52
5631	7239	0.719465	GCCGATGAACAGTAACACGG	59.281	55.000	0.00	0.00	41.44	4.94
5633	7241	2.000447	GAGGCCGATGAACAGTAACAC	59.000	52.381	0.00	0.00	0.00	3.32
5634	7242	1.621317	TGAGGCCGATGAACAGTAACA	59.379	47.619	0.00	0.00	0.00	2.41
5635	7243	2.380084	TGAGGCCGATGAACAGTAAC	57.620	50.000	0.00	0.00	0.00	2.50
5650	7258	4.247380	GCCCGGGCTCAGATGAGG	62.247	72.222	38.76	0.00	42.29	3.86
5664	7272	2.347114	GTGCCCAAATTGGTGCCC	59.653	61.111	18.27	7.39	35.17	5.36
5675	7283	2.582052	GAATATCCAATTCGGTGCCCA	58.418	47.619	0.00	0.00	35.57	5.36
5702	7310	7.557036	AAAAAGTAACAAACAAACACGAGAC	57.443	32.000	0.00	0.00	0.00	3.36
5751	7359	0.895559	AGTAAAACAGGCTGGCAGGC	60.896	55.000	31.61	31.61	41.73	4.85
5752	7360	3.346426	AGTAAAACAGGCTGGCAGG	57.654	52.632	20.34	1.78	0.00	4.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.