Multiple sequence alignment - TraesCS4D01G146800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G146800 chr4D 100.000 2673 0 0 1 2673 136499391 136502063 0.000000e+00 4937.0
1 TraesCS4D01G146800 chr4D 98.201 278 4 1 2 279 191931771 191932047 4.000000e-133 484.0
2 TraesCS4D01G146800 chr4D 91.071 280 8 7 2 279 270378998 270379262 1.960000e-96 363.0
3 TraesCS4D01G146800 chr4D 80.936 299 50 7 417 712 340025909 340026203 2.070000e-56 230.0
4 TraesCS4D01G146800 chr4D 84.348 230 30 5 2277 2503 195562108 195561882 1.250000e-53 220.0
5 TraesCS4D01G146800 chr4D 82.716 243 35 7 2277 2515 405020657 405020896 2.700000e-50 209.0
6 TraesCS4D01G146800 chr4D 82.083 240 36 5 2277 2515 214791429 214791196 5.840000e-47 198.0
7 TraesCS4D01G146800 chr4D 94.444 108 6 0 2161 2268 254725957 254726064 1.650000e-37 167.0
8 TraesCS4D01G146800 chr3B 86.828 1154 135 8 1005 2155 729724323 729725462 0.000000e+00 1273.0
9 TraesCS4D01G146800 chr3B 85.512 283 32 7 2 278 760359625 760359904 1.210000e-73 287.0
10 TraesCS4D01G146800 chr3B 85.185 108 13 3 26 131 760359443 760359549 1.010000e-19 108.0
11 TraesCS4D01G146800 chr4A 85.828 882 85 8 279 1124 397292481 397291604 0.000000e+00 900.0
12 TraesCS4D01G146800 chr4A 90.152 660 61 4 1610 2268 397261586 397260930 0.000000e+00 856.0
13 TraesCS4D01G146800 chr4A 87.347 490 58 4 1121 1608 397270087 397269600 2.320000e-155 558.0
14 TraesCS4D01G146800 chr3A 87.231 697 89 0 1021 1717 687103231 687103927 0.000000e+00 795.0
15 TraesCS4D01G146800 chr3A 90.281 391 34 3 1767 2155 687103946 687104334 2.370000e-140 508.0
16 TraesCS4D01G146800 chr3D 90.404 396 32 5 1764 2155 550270633 550271026 1.420000e-142 516.0
17 TraesCS4D01G146800 chr3D 84.407 295 39 5 1872 2164 267221477 267221188 1.570000e-72 283.0
18 TraesCS4D01G146800 chr3D 82.072 251 37 7 2269 2515 199272022 199271776 9.700000e-50 207.0
19 TraesCS4D01G146800 chr3D 92.308 117 8 1 2152 2268 497643653 497643538 5.920000e-37 165.0
20 TraesCS4D01G146800 chr5A 93.548 279 16 2 2 279 88845259 88845536 5.320000e-112 414.0
21 TraesCS4D01G146800 chr5A 78.177 362 63 15 2161 2515 113901756 113901404 1.610000e-52 217.0
22 TraesCS4D01G146800 chr1A 86.195 297 38 3 417 712 252279638 252279932 4.290000e-83 318.0
23 TraesCS4D01G146800 chr1A 93.750 112 5 2 2158 2268 555068766 555068656 1.650000e-37 167.0
24 TraesCS4D01G146800 chr1A 84.259 108 14 3 26 131 288645134 288645240 4.710000e-18 102.0
25 TraesCS4D01G146800 chr1D 85.859 297 40 2 417 712 199833653 199833948 5.550000e-82 315.0
26 TraesCS4D01G146800 chr1D 83.333 270 40 5 2249 2515 207659478 207659745 7.390000e-61 244.0
27 TraesCS4D01G146800 chr1D 94.495 109 6 0 2160 2268 183012823 183012715 4.580000e-38 169.0
28 TraesCS4D01G146800 chr1D 91.111 45 2 2 246 289 20303734 20303691 2.870000e-05 60.2
29 TraesCS4D01G146800 chr7D 86.000 250 30 5 2268 2515 414238230 414238476 2.040000e-66 263.0
30 TraesCS4D01G146800 chr7D 84.774 243 30 6 2277 2515 414151881 414152120 1.240000e-58 237.0
31 TraesCS4D01G146800 chr7D 92.105 38 1 2 863 898 39514215 39514252 5.000000e-03 52.8
32 TraesCS4D01G146800 chr6B 83.108 296 39 10 1873 2162 471005284 471004994 2.640000e-65 259.0
33 TraesCS4D01G146800 chr6B 80.228 263 44 8 452 709 127015819 127015560 9.770000e-45 191.0
34 TraesCS4D01G146800 chr6B 95.370 108 5 0 2161 2268 140816982 140816875 3.540000e-39 172.0
35 TraesCS4D01G146800 chr6B 84.685 111 14 3 26 134 220683386 220683277 1.010000e-19 108.0
36 TraesCS4D01G146800 chrUn 85.477 241 28 5 1916 2155 289376421 289376655 7.390000e-61 244.0
37 TraesCS4D01G146800 chrUn 85.020 247 30 5 1916 2161 322153987 322153747 7.390000e-61 244.0
38 TraesCS4D01G146800 chrUn 84.034 238 30 7 2277 2509 56491586 56491820 3.460000e-54 222.0
39 TraesCS4D01G146800 chr4B 84.836 244 29 7 2277 2515 342715306 342715066 3.440000e-59 239.0
40 TraesCS4D01G146800 chr4B 91.111 45 2 2 246 289 88280971 88280928 2.870000e-05 60.2
41 TraesCS4D01G146800 chr7A 84.647 241 30 5 1916 2155 163074694 163074928 1.600000e-57 233.0
42 TraesCS4D01G146800 chr7A 81.181 271 49 2 444 713 219129513 219129782 1.610000e-52 217.0
43 TraesCS4D01G146800 chr7A 78.983 295 54 7 417 704 695815701 695815994 7.550000e-46 195.0
44 TraesCS4D01G146800 chr7A 85.484 62 3 6 222 279 499670464 499670405 2.870000e-05 60.2
45 TraesCS4D01G146800 chr6D 82.031 256 42 4 452 705 5251179 5250926 5.800000e-52 215.0
46 TraesCS4D01G146800 chr6D 80.408 245 40 6 430 668 426047275 426047517 2.110000e-41 180.0
47 TraesCS4D01G146800 chr6D 83.193 119 18 2 14 131 171498760 171498877 1.010000e-19 108.0
48 TraesCS4D01G146800 chr6D 82.353 119 19 2 14 131 190025495 190025612 4.710000e-18 102.0
49 TraesCS4D01G146800 chr5D 80.479 292 45 9 432 712 511609925 511610215 2.080000e-51 213.0
50 TraesCS4D01G146800 chr2D 95.370 108 5 0 2161 2268 201318665 201318772 3.540000e-39 172.0
51 TraesCS4D01G146800 chr2D 95.327 107 4 1 2161 2267 338750448 338750343 4.580000e-38 169.0
52 TraesCS4D01G146800 chr6A 93.333 45 1 2 246 289 440622135 440622178 6.180000e-07 65.8
53 TraesCS4D01G146800 chr1B 91.111 45 2 2 246 289 187723153 187723110 2.870000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G146800 chr4D 136499391 136502063 2672 False 4937.0 4937 100.000 1 2673 1 chr4D.!!$F1 2672
1 TraesCS4D01G146800 chr3B 729724323 729725462 1139 False 1273.0 1273 86.828 1005 2155 1 chr3B.!!$F1 1150
2 TraesCS4D01G146800 chr4A 397291604 397292481 877 True 900.0 900 85.828 279 1124 1 chr4A.!!$R3 845
3 TraesCS4D01G146800 chr4A 397260930 397261586 656 True 856.0 856 90.152 1610 2268 1 chr4A.!!$R1 658
4 TraesCS4D01G146800 chr3A 687103231 687104334 1103 False 651.5 795 88.756 1021 2155 2 chr3A.!!$F1 1134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.033796 ACTTGCACTGGATGGATGGG 60.034 55.0 0.00 0.0 0.00 4.00 F
181 182 0.033796 CTTGCACTGGATGGATGGGT 60.034 55.0 0.00 0.0 0.00 4.51 F
698 710 0.043940 AGAGGCCAGAGGTCATCCTT 59.956 55.0 5.01 0.0 45.24 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1075 1110 0.250234 CATGGTCGTGGAGGTGATGT 59.750 55.0 0.0 0.0 0.0 3.06 R
1452 1487 0.390340 GTCCTCGTGATGAAGCAGCA 60.390 55.0 0.0 0.0 0.0 4.41 R
2406 2444 0.037303 TCGGTAGGTCTTGGAGTCGT 59.963 55.0 0.0 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.363306 AAAATGGTCTGTCAGGCACA 57.637 45.000 6.80 2.49 0.00 4.57
31 32 2.592102 AAATGGTCTGTCAGGCACAT 57.408 45.000 6.80 4.82 33.23 3.21
32 33 3.719268 AAATGGTCTGTCAGGCACATA 57.281 42.857 6.80 0.00 33.23 2.29
33 34 3.939740 AATGGTCTGTCAGGCACATAT 57.060 42.857 6.80 0.00 33.23 1.78
34 35 2.988010 TGGTCTGTCAGGCACATATC 57.012 50.000 6.80 0.00 33.23 1.63
35 36 1.486310 TGGTCTGTCAGGCACATATCC 59.514 52.381 6.80 0.00 33.23 2.59
36 37 1.486310 GGTCTGTCAGGCACATATCCA 59.514 52.381 6.80 0.00 33.23 3.41
37 38 2.092968 GGTCTGTCAGGCACATATCCAA 60.093 50.000 6.80 0.00 33.23 3.53
38 39 3.434167 GGTCTGTCAGGCACATATCCAAT 60.434 47.826 6.80 0.00 33.23 3.16
39 40 4.202357 GGTCTGTCAGGCACATATCCAATA 60.202 45.833 6.80 0.00 33.23 1.90
40 41 5.513788 GGTCTGTCAGGCACATATCCAATAT 60.514 44.000 6.80 0.00 33.23 1.28
41 42 6.295859 GGTCTGTCAGGCACATATCCAATATA 60.296 42.308 6.80 0.00 33.23 0.86
42 43 6.591834 GTCTGTCAGGCACATATCCAATATAC 59.408 42.308 0.00 0.00 33.23 1.47
43 44 6.269769 TCTGTCAGGCACATATCCAATATACA 59.730 38.462 0.00 0.00 33.23 2.29
44 45 7.019656 TGTCAGGCACATATCCAATATACAT 57.980 36.000 0.00 0.00 0.00 2.29
45 46 8.144862 TGTCAGGCACATATCCAATATACATA 57.855 34.615 0.00 0.00 0.00 2.29
46 47 8.260114 TGTCAGGCACATATCCAATATACATAG 58.740 37.037 0.00 0.00 0.00 2.23
47 48 8.478066 GTCAGGCACATATCCAATATACATAGA 58.522 37.037 0.00 0.00 0.00 1.98
48 49 9.045745 TCAGGCACATATCCAATATACATAGAA 57.954 33.333 0.00 0.00 0.00 2.10
49 50 9.322773 CAGGCACATATCCAATATACATAGAAG 57.677 37.037 0.00 0.00 0.00 2.85
50 51 7.989741 AGGCACATATCCAATATACATAGAAGC 59.010 37.037 0.00 0.00 0.00 3.86
51 52 7.770433 GGCACATATCCAATATACATAGAAGCA 59.230 37.037 0.00 0.00 0.00 3.91
52 53 9.166173 GCACATATCCAATATACATAGAAGCAA 57.834 33.333 0.00 0.00 0.00 3.91
54 55 9.896645 ACATATCCAATATACATAGAAGCAAGG 57.103 33.333 0.00 0.00 0.00 3.61
78 79 9.681062 AGGATATTGAAATAAAAGAAAGTCGGA 57.319 29.630 0.00 0.00 0.00 4.55
83 84 7.562454 TGAAATAAAAGAAAGTCGGAAGTGT 57.438 32.000 0.00 0.00 0.00 3.55
84 85 7.992008 TGAAATAAAAGAAAGTCGGAAGTGTT 58.008 30.769 0.00 0.00 0.00 3.32
85 86 9.111613 TGAAATAAAAGAAAGTCGGAAGTGTTA 57.888 29.630 0.00 0.00 0.00 2.41
86 87 9.940166 GAAATAAAAGAAAGTCGGAAGTGTTAA 57.060 29.630 0.00 0.00 0.00 2.01
156 157 6.985188 AAAATGAGACACGTTATATGTGCT 57.015 33.333 5.74 4.65 38.65 4.40
157 158 6.985188 AAATGAGACACGTTATATGTGCTT 57.015 33.333 5.74 0.00 38.65 3.91
158 159 5.973651 ATGAGACACGTTATATGTGCTTG 57.026 39.130 5.74 0.00 38.65 4.01
159 160 4.180817 TGAGACACGTTATATGTGCTTGG 58.819 43.478 5.74 0.00 38.65 3.61
160 161 3.531538 AGACACGTTATATGTGCTTGGG 58.468 45.455 5.74 0.00 38.65 4.12
161 162 3.196901 AGACACGTTATATGTGCTTGGGA 59.803 43.478 5.74 0.00 38.65 4.37
162 163 3.267483 ACACGTTATATGTGCTTGGGAC 58.733 45.455 5.74 0.00 38.65 4.46
163 164 3.055385 ACACGTTATATGTGCTTGGGACT 60.055 43.478 5.74 0.00 38.65 3.85
164 165 3.938963 CACGTTATATGTGCTTGGGACTT 59.061 43.478 0.00 0.00 0.00 3.01
165 166 3.938963 ACGTTATATGTGCTTGGGACTTG 59.061 43.478 0.00 0.00 0.00 3.16
166 167 3.242739 CGTTATATGTGCTTGGGACTTGC 60.243 47.826 0.00 0.00 0.00 4.01
167 168 2.512692 ATATGTGCTTGGGACTTGCA 57.487 45.000 0.00 0.00 35.37 4.08
170 171 4.162592 TGCTTGGGACTTGCACTG 57.837 55.556 0.00 0.00 33.29 3.66
171 172 1.529010 TGCTTGGGACTTGCACTGG 60.529 57.895 0.00 0.00 33.29 4.00
172 173 1.228245 GCTTGGGACTTGCACTGGA 60.228 57.895 0.00 0.00 0.00 3.86
173 174 0.610232 GCTTGGGACTTGCACTGGAT 60.610 55.000 0.00 0.00 0.00 3.41
174 175 1.171308 CTTGGGACTTGCACTGGATG 58.829 55.000 0.00 0.00 0.00 3.51
175 176 0.251297 TTGGGACTTGCACTGGATGG 60.251 55.000 0.00 0.00 0.00 3.51
176 177 1.133181 TGGGACTTGCACTGGATGGA 61.133 55.000 0.00 0.00 0.00 3.41
177 178 0.257039 GGGACTTGCACTGGATGGAT 59.743 55.000 0.00 0.00 0.00 3.41
178 179 1.386533 GGACTTGCACTGGATGGATG 58.613 55.000 0.00 0.00 0.00 3.51
179 180 1.386533 GACTTGCACTGGATGGATGG 58.613 55.000 0.00 0.00 0.00 3.51
180 181 0.033796 ACTTGCACTGGATGGATGGG 60.034 55.000 0.00 0.00 0.00 4.00
181 182 0.033796 CTTGCACTGGATGGATGGGT 60.034 55.000 0.00 0.00 0.00 4.51
182 183 0.323633 TTGCACTGGATGGATGGGTG 60.324 55.000 0.00 0.00 0.00 4.61
183 184 1.304282 GCACTGGATGGATGGGTGT 59.696 57.895 0.00 0.00 0.00 4.16
184 185 0.323725 GCACTGGATGGATGGGTGTT 60.324 55.000 0.00 0.00 0.00 3.32
185 186 1.892329 GCACTGGATGGATGGGTGTTT 60.892 52.381 0.00 0.00 0.00 2.83
186 187 2.094675 CACTGGATGGATGGGTGTTTC 58.905 52.381 0.00 0.00 0.00 2.78
187 188 1.710244 ACTGGATGGATGGGTGTTTCA 59.290 47.619 0.00 0.00 0.00 2.69
188 189 2.094675 CTGGATGGATGGGTGTTTCAC 58.905 52.381 0.00 0.00 0.00 3.18
189 190 1.710244 TGGATGGATGGGTGTTTCACT 59.290 47.619 0.06 0.00 34.40 3.41
190 191 2.109834 TGGATGGATGGGTGTTTCACTT 59.890 45.455 0.06 0.00 34.40 3.16
191 192 3.165071 GGATGGATGGGTGTTTCACTTT 58.835 45.455 0.06 0.00 34.40 2.66
192 193 3.578282 GGATGGATGGGTGTTTCACTTTT 59.422 43.478 0.06 0.00 34.40 2.27
193 194 4.321974 GGATGGATGGGTGTTTCACTTTTC 60.322 45.833 0.06 0.00 34.40 2.29
194 195 2.962421 TGGATGGGTGTTTCACTTTTCC 59.038 45.455 0.06 4.82 34.40 3.13
195 196 2.299013 GGATGGGTGTTTCACTTTTCCC 59.701 50.000 0.00 0.00 34.40 3.97
196 197 1.783071 TGGGTGTTTCACTTTTCCCC 58.217 50.000 0.00 0.00 34.40 4.81
197 198 1.045407 GGGTGTTTCACTTTTCCCCC 58.955 55.000 0.06 0.00 34.40 5.40
198 199 1.412505 GGGTGTTTCACTTTTCCCCCT 60.413 52.381 0.06 0.00 34.40 4.79
199 200 2.394632 GGTGTTTCACTTTTCCCCCTT 58.605 47.619 0.06 0.00 34.40 3.95
200 201 2.364324 GGTGTTTCACTTTTCCCCCTTC 59.636 50.000 0.06 0.00 34.40 3.46
201 202 3.028130 GTGTTTCACTTTTCCCCCTTCA 58.972 45.455 0.00 0.00 0.00 3.02
202 203 3.641436 GTGTTTCACTTTTCCCCCTTCAT 59.359 43.478 0.00 0.00 0.00 2.57
203 204 4.830600 GTGTTTCACTTTTCCCCCTTCATA 59.169 41.667 0.00 0.00 0.00 2.15
204 205 4.830600 TGTTTCACTTTTCCCCCTTCATAC 59.169 41.667 0.00 0.00 0.00 2.39
205 206 5.077564 GTTTCACTTTTCCCCCTTCATACT 58.922 41.667 0.00 0.00 0.00 2.12
206 207 4.569719 TCACTTTTCCCCCTTCATACTC 57.430 45.455 0.00 0.00 0.00 2.59
207 208 4.175962 TCACTTTTCCCCCTTCATACTCT 58.824 43.478 0.00 0.00 0.00 3.24
208 209 4.019321 TCACTTTTCCCCCTTCATACTCTG 60.019 45.833 0.00 0.00 0.00 3.35
209 210 3.916989 ACTTTTCCCCCTTCATACTCTGT 59.083 43.478 0.00 0.00 0.00 3.41
210 211 4.354087 ACTTTTCCCCCTTCATACTCTGTT 59.646 41.667 0.00 0.00 0.00 3.16
211 212 5.162980 ACTTTTCCCCCTTCATACTCTGTTT 60.163 40.000 0.00 0.00 0.00 2.83
212 213 5.333566 TTTCCCCCTTCATACTCTGTTTT 57.666 39.130 0.00 0.00 0.00 2.43
213 214 4.569719 TCCCCCTTCATACTCTGTTTTC 57.430 45.455 0.00 0.00 0.00 2.29
214 215 3.913799 TCCCCCTTCATACTCTGTTTTCA 59.086 43.478 0.00 0.00 0.00 2.69
215 216 4.540099 TCCCCCTTCATACTCTGTTTTCAT 59.460 41.667 0.00 0.00 0.00 2.57
216 217 4.641989 CCCCCTTCATACTCTGTTTTCATG 59.358 45.833 0.00 0.00 0.00 3.07
217 218 4.096984 CCCCTTCATACTCTGTTTTCATGC 59.903 45.833 0.00 0.00 0.00 4.06
218 219 4.096984 CCCTTCATACTCTGTTTTCATGCC 59.903 45.833 0.00 0.00 0.00 4.40
219 220 4.701651 CCTTCATACTCTGTTTTCATGCCA 59.298 41.667 0.00 0.00 0.00 4.92
220 221 5.392380 CCTTCATACTCTGTTTTCATGCCAC 60.392 44.000 0.00 0.00 0.00 5.01
221 222 4.650734 TCATACTCTGTTTTCATGCCACA 58.349 39.130 0.00 0.00 0.00 4.17
222 223 5.069318 TCATACTCTGTTTTCATGCCACAA 58.931 37.500 0.00 0.00 0.00 3.33
223 224 5.534278 TCATACTCTGTTTTCATGCCACAAA 59.466 36.000 0.00 0.00 0.00 2.83
224 225 4.734398 ACTCTGTTTTCATGCCACAAAA 57.266 36.364 0.00 0.00 0.00 2.44
225 226 5.280654 ACTCTGTTTTCATGCCACAAAAT 57.719 34.783 0.00 0.00 0.00 1.82
226 227 6.403866 ACTCTGTTTTCATGCCACAAAATA 57.596 33.333 0.00 0.00 0.00 1.40
227 228 6.815089 ACTCTGTTTTCATGCCACAAAATAA 58.185 32.000 0.00 0.00 0.00 1.40
228 229 7.271511 ACTCTGTTTTCATGCCACAAAATAAA 58.728 30.769 0.00 0.00 0.00 1.40
229 230 7.933033 ACTCTGTTTTCATGCCACAAAATAAAT 59.067 29.630 0.00 0.00 0.00 1.40
230 231 9.421806 CTCTGTTTTCATGCCACAAAATAAATA 57.578 29.630 0.00 0.00 0.00 1.40
231 232 9.202273 TCTGTTTTCATGCCACAAAATAAATAC 57.798 29.630 0.00 0.00 0.00 1.89
232 233 8.893219 TGTTTTCATGCCACAAAATAAATACA 57.107 26.923 0.00 0.00 0.00 2.29
233 234 9.499479 TGTTTTCATGCCACAAAATAAATACAT 57.501 25.926 0.00 0.00 0.00 2.29
238 239 9.800433 TCATGCCACAAAATAAATACATACAAG 57.200 29.630 0.00 0.00 0.00 3.16
239 240 9.585099 CATGCCACAAAATAAATACATACAAGT 57.415 29.630 0.00 0.00 0.00 3.16
252 253 8.589335 AATACATACAAGTTATTGACTAGCCG 57.411 34.615 0.00 0.00 37.72 5.52
253 254 5.974108 ACATACAAGTTATTGACTAGCCGT 58.026 37.500 0.00 0.00 37.72 5.68
254 255 5.810587 ACATACAAGTTATTGACTAGCCGTG 59.189 40.000 0.00 0.00 37.72 4.94
255 256 4.267349 ACAAGTTATTGACTAGCCGTGT 57.733 40.909 0.00 0.00 37.72 4.49
256 257 3.994392 ACAAGTTATTGACTAGCCGTGTG 59.006 43.478 0.00 0.00 37.72 3.82
257 258 4.242475 CAAGTTATTGACTAGCCGTGTGA 58.758 43.478 0.00 0.00 37.72 3.58
258 259 4.530710 AGTTATTGACTAGCCGTGTGAA 57.469 40.909 0.00 0.00 36.65 3.18
259 260 5.086104 AGTTATTGACTAGCCGTGTGAAT 57.914 39.130 0.00 0.00 36.65 2.57
260 261 4.870426 AGTTATTGACTAGCCGTGTGAATG 59.130 41.667 0.00 0.00 36.65 2.67
261 262 1.438651 TTGACTAGCCGTGTGAATGC 58.561 50.000 0.00 0.00 0.00 3.56
262 263 0.320050 TGACTAGCCGTGTGAATGCA 59.680 50.000 0.00 0.00 0.00 3.96
263 264 0.721718 GACTAGCCGTGTGAATGCAC 59.278 55.000 0.00 0.00 45.35 4.57
272 273 1.206578 GTGAATGCACGGGTTGACG 59.793 57.895 0.00 0.00 34.94 4.35
273 274 1.069935 TGAATGCACGGGTTGACGA 59.930 52.632 0.00 0.00 37.61 4.20
274 275 1.225376 TGAATGCACGGGTTGACGAC 61.225 55.000 0.00 0.00 37.61 4.34
275 276 0.949105 GAATGCACGGGTTGACGACT 60.949 55.000 0.00 0.00 37.61 4.18
276 277 0.319083 AATGCACGGGTTGACGACTA 59.681 50.000 0.00 0.00 37.61 2.59
277 278 0.108804 ATGCACGGGTTGACGACTAG 60.109 55.000 0.00 0.00 37.61 2.57
287 288 4.430007 GGTTGACGACTAGTGATGCATAA 58.570 43.478 0.00 0.00 0.00 1.90
293 294 4.747108 ACGACTAGTGATGCATAATCTTGC 59.253 41.667 0.00 0.00 43.07 4.01
326 327 0.322456 TGGGGAACTGCTTTGGATCG 60.322 55.000 0.00 0.00 0.00 3.69
344 345 4.082463 GGATCGTCTGGAGATGAACTATCC 60.082 50.000 2.71 2.33 42.66 2.59
347 348 3.634448 CGTCTGGAGATGAACTATCCACT 59.366 47.826 0.00 0.00 38.19 4.00
353 354 5.721480 TGGAGATGAACTATCCACTCTTTGA 59.279 40.000 0.00 0.00 38.19 2.69
372 373 4.864483 TGAGATGACTACCCAGTAGAGT 57.136 45.455 8.70 0.00 38.29 3.24
378 379 3.447586 TGACTACCCAGTAGAGTTGATGC 59.552 47.826 8.70 0.00 38.29 3.91
379 380 3.702045 GACTACCCAGTAGAGTTGATGCT 59.298 47.826 8.70 0.00 38.29 3.79
384 385 4.042187 ACCCAGTAGAGTTGATGCTTTCTT 59.958 41.667 0.00 0.00 0.00 2.52
388 389 6.091986 CCAGTAGAGTTGATGCTTTCTTCTTC 59.908 42.308 0.00 0.00 0.00 2.87
400 401 5.702670 TGCTTTCTTCTTCGATCTCAATTGT 59.297 36.000 5.13 0.00 0.00 2.71
403 404 5.536554 TCTTCTTCGATCTCAATTGTTGC 57.463 39.130 5.13 0.00 0.00 4.17
413 414 2.016318 TCAATTGTTGCCGCTGGATAG 58.984 47.619 5.13 0.00 0.00 2.08
417 418 0.175760 TGTTGCCGCTGGATAGTCTC 59.824 55.000 0.00 0.00 0.00 3.36
427 428 3.305471 GCTGGATAGTCTCGGTGGAATAC 60.305 52.174 0.00 0.00 0.00 1.89
428 429 4.145807 CTGGATAGTCTCGGTGGAATACT 58.854 47.826 0.00 0.00 0.00 2.12
429 430 3.889538 TGGATAGTCTCGGTGGAATACTG 59.110 47.826 0.00 0.00 36.99 2.74
430 431 3.305471 GGATAGTCTCGGTGGAATACTGC 60.305 52.174 0.00 0.00 35.54 4.40
432 433 0.527817 GTCTCGGTGGAATACTGCGG 60.528 60.000 0.00 0.00 35.54 5.69
436 437 3.573491 GTGGAATACTGCGGCGGC 61.573 66.667 9.78 9.68 40.52 6.53
450 451 2.795297 CGGCGACCTCTGAGACTC 59.205 66.667 0.00 0.00 0.00 3.36
455 456 1.697772 CGACCTCTGAGACTCCGTCG 61.698 65.000 15.40 15.40 37.67 5.12
459 460 1.370587 CTCTGAGACTCCGTCGGACC 61.371 65.000 10.71 5.32 37.67 4.46
460 461 2.745100 TGAGACTCCGTCGGACCG 60.745 66.667 10.71 7.84 37.67 4.79
486 487 2.037772 GTGCCATAGACCCAGTATGAGG 59.962 54.545 0.00 0.00 39.69 3.86
498 499 1.037579 GTATGAGGCTTGGTTGGGGC 61.038 60.000 0.00 0.00 0.00 5.80
500 501 2.097978 ATGAGGCTTGGTTGGGGCTT 62.098 55.000 0.00 0.00 38.46 4.35
503 504 3.373565 GCTTGGTTGGGGCTTCGG 61.374 66.667 0.00 0.00 0.00 4.30
504 505 2.115266 CTTGGTTGGGGCTTCGGT 59.885 61.111 0.00 0.00 0.00 4.69
509 510 1.203075 TGGTTGGGGCTTCGGTTTTAT 60.203 47.619 0.00 0.00 0.00 1.40
526 527 6.040247 GGTTTTATATGTTAGGCTTTGGTGC 58.960 40.000 0.00 0.00 0.00 5.01
546 547 3.057734 GCGAGGTCTATTTGGTATTCGG 58.942 50.000 0.00 0.00 0.00 4.30
550 551 3.709653 AGGTCTATTTGGTATTCGGCTCA 59.290 43.478 0.00 0.00 0.00 4.26
551 552 4.058817 GGTCTATTTGGTATTCGGCTCAG 58.941 47.826 0.00 0.00 0.00 3.35
557 558 3.179443 TGGTATTCGGCTCAGACATTC 57.821 47.619 0.00 0.00 0.00 2.67
558 559 2.128035 GGTATTCGGCTCAGACATTCG 58.872 52.381 0.00 0.00 0.00 3.34
566 567 1.903877 CTCAGACATTCGGCACCCCT 61.904 60.000 0.00 0.00 0.00 4.79
614 626 3.055530 AGGTGATGGCTTCAGACTTACTG 60.056 47.826 2.94 0.00 46.97 2.74
683 695 2.640184 TGCATTGCTCAGATGAAGAGG 58.360 47.619 10.49 0.00 33.72 3.69
688 700 0.829333 GCTCAGATGAAGAGGCCAGA 59.171 55.000 5.01 0.00 33.72 3.86
698 710 0.043940 AGAGGCCAGAGGTCATCCTT 59.956 55.000 5.01 0.00 45.24 3.36
732 744 1.557371 TCATGGCACGGGATAGTTTCA 59.443 47.619 0.00 0.00 0.00 2.69
759 771 8.831550 GTTGCTCATTTGGGTTTGTAATAAAAA 58.168 29.630 0.00 0.00 0.00 1.94
791 803 6.763355 TGTAGTTGAGAGAATTTCAGCTCTT 58.237 36.000 15.70 7.93 41.33 2.85
793 805 8.367911 TGTAGTTGAGAGAATTTCAGCTCTTAA 58.632 33.333 15.70 0.00 41.33 1.85
799 811 8.484575 TGAGAGAATTTCAGCTCTTAATCTGAT 58.515 33.333 15.70 0.00 41.33 2.90
806 818 6.187125 TCAGCTCTTAATCTGATTGTTTGC 57.813 37.500 13.01 11.32 34.69 3.68
840 852 5.336102 ACTTTTGATCCCTGGATTGTTGAT 58.664 37.500 0.00 0.00 34.60 2.57
845 857 3.281727 TCCCTGGATTGTTGATGTAGC 57.718 47.619 0.00 0.00 0.00 3.58
889 924 4.354208 TTTAATAAAATGGGGCAGGGGA 57.646 40.909 0.00 0.00 0.00 4.81
890 925 2.959421 AATAAAATGGGGCAGGGGAA 57.041 45.000 0.00 0.00 0.00 3.97
914 949 8.675705 AAACCCCTTTCATTCAAAATTGTAAG 57.324 30.769 0.00 0.00 0.00 2.34
915 950 7.610580 ACCCCTTTCATTCAAAATTGTAAGA 57.389 32.000 0.00 0.00 0.00 2.10
916 951 8.206126 ACCCCTTTCATTCAAAATTGTAAGAT 57.794 30.769 0.00 0.00 0.00 2.40
920 955 9.709495 CCTTTCATTCAAAATTGTAAGATTCCA 57.291 29.630 0.00 0.00 0.00 3.53
942 977 0.744771 GGTTCCTGGCTGGTCGATTC 60.745 60.000 10.44 0.00 37.07 2.52
944 979 2.202932 CCTGGCTGGTCGATTCCG 60.203 66.667 1.62 0.00 37.07 4.30
946 981 1.519455 CTGGCTGGTCGATTCCGTC 60.519 63.158 0.00 0.00 37.05 4.79
959 994 0.108520 TTCCGTCGAATAGGTGTGGC 60.109 55.000 0.00 0.00 0.00 5.01
1012 1047 4.719773 GTGGATGGGTACTATATATGGGCA 59.280 45.833 0.80 0.00 0.00 5.36
1053 1088 4.769688 CGCCATGCTCCTTTATATATGGA 58.230 43.478 0.00 3.68 37.79 3.41
1097 1132 2.927856 ACCTCCACGACCATGGCA 60.928 61.111 13.04 0.00 39.85 4.92
1130 1165 4.698625 ACGCGGACCCTCTCCCTT 62.699 66.667 12.47 0.00 35.21 3.95
1150 1185 0.858369 TCCCTCCTATTCCTAGGCGT 59.142 55.000 2.96 0.00 43.82 5.68
1170 1205 4.796231 CCTCCCTCGTCAACGCCG 62.796 72.222 0.00 0.00 39.60 6.46
1171 1206 4.796231 CTCCCTCGTCAACGCCGG 62.796 72.222 0.00 0.00 39.60 6.13
1225 1260 4.808649 GTACCCAGAGTACTGCGC 57.191 61.111 0.00 0.00 46.69 6.09
1259 1294 1.604278 GCATGCCCGAAGAGTAAATCC 59.396 52.381 6.36 0.00 0.00 3.01
1260 1295 2.917933 CATGCCCGAAGAGTAAATCCA 58.082 47.619 0.00 0.00 0.00 3.41
1339 1374 4.410400 GGCCACCCTAGCACGCTT 62.410 66.667 0.00 0.00 0.00 4.68
1344 1379 1.677966 ACCCTAGCACGCTTCGAGA 60.678 57.895 0.00 0.00 0.00 4.04
1434 1469 0.463654 GCACCTCAGTCACCACAACA 60.464 55.000 0.00 0.00 0.00 3.33
1436 1471 2.146342 CACCTCAGTCACCACAACATC 58.854 52.381 0.00 0.00 0.00 3.06
1463 1498 1.417592 CGACGTGTGCTGCTTCATC 59.582 57.895 0.00 0.00 0.00 2.92
1464 1499 1.284297 CGACGTGTGCTGCTTCATCA 61.284 55.000 0.00 0.00 0.00 3.07
1478 1513 0.035343 TCATCACGAGGACCGAGAGT 60.035 55.000 0.00 0.00 40.91 3.24
1500 1535 2.279851 CGGTCGTGTGGAACTGCA 60.280 61.111 0.00 0.00 38.04 4.41
1502 1537 1.647084 GGTCGTGTGGAACTGCAAC 59.353 57.895 0.00 0.00 38.04 4.17
1535 1570 1.072505 TGGGGCGTCCAAGAAGAAC 59.927 57.895 9.07 0.00 43.84 3.01
1554 1589 0.523966 CGACCTGCTCTCGAAAGACT 59.476 55.000 0.00 0.00 35.39 3.24
1556 1591 0.037790 ACCTGCTCTCGAAAGACTGC 60.038 55.000 0.00 0.00 35.39 4.40
1560 1595 0.109504 GCTCTCGAAAGACTGCGACT 60.110 55.000 0.00 0.00 35.39 4.18
1580 1615 0.178767 TGGAGAAGATCATGGGCGTG 59.821 55.000 0.00 0.00 0.00 5.34
1581 1616 0.179000 GGAGAAGATCATGGGCGTGT 59.821 55.000 0.00 0.00 0.00 4.49
1588 1623 0.036732 ATCATGGGCGTGTTGTCTGT 59.963 50.000 0.00 0.00 0.00 3.41
1593 1628 1.887242 GGCGTGTTGTCTGTGCTCA 60.887 57.895 0.00 0.00 0.00 4.26
1621 1656 1.066215 TGTACGCATCACCAAGAGCAT 60.066 47.619 0.00 0.00 0.00 3.79
1873 1909 3.570975 TGGCCTCATTAATGATGTCATGC 59.429 43.478 20.02 14.26 33.23 4.06
1942 1978 4.590647 ACCACTCACTTCTTCTGAGATTCA 59.409 41.667 2.47 0.00 37.90 2.57
2050 2087 3.326588 GGGCCCAAAATACACCTTTTCTT 59.673 43.478 19.95 0.00 0.00 2.52
2054 2091 5.337250 GCCCAAAATACACCTTTTCTTAGGG 60.337 44.000 0.00 0.00 39.76 3.53
2074 2111 2.076863 GAAGGTACGCATGCAAGTCTT 58.923 47.619 19.57 14.76 0.00 3.01
2092 2129 5.087323 AGTCTTTTCCCTCACTCTACATGA 58.913 41.667 0.00 0.00 0.00 3.07
2178 2216 5.049405 ACAAACTTGTAAGTGCATCTAGTGC 60.049 40.000 9.52 9.52 46.43 4.40
2207 2245 5.389098 CGTAGTTGGTTTTGGAGTATTGACG 60.389 44.000 0.00 0.00 0.00 4.35
2223 2261 1.668751 TGACGACAAACTTGGTTGAGC 59.331 47.619 5.33 0.00 32.59 4.26
2225 2263 0.655733 CGACAAACTTGGTTGAGCGT 59.344 50.000 5.33 0.00 32.59 5.07
2268 2306 3.454812 ACAGGACAACACAGGTAGAAGTT 59.545 43.478 0.00 0.00 0.00 2.66
2269 2307 3.809832 CAGGACAACACAGGTAGAAGTTG 59.190 47.826 0.00 0.00 45.02 3.16
2273 2311 3.713288 CAACACAGGTAGAAGTTGTCGA 58.287 45.455 0.00 0.00 37.25 4.20
2274 2312 3.366440 ACACAGGTAGAAGTTGTCGAC 57.634 47.619 9.11 9.11 0.00 4.20
2275 2313 2.691526 ACACAGGTAGAAGTTGTCGACA 59.308 45.455 15.76 15.76 33.76 4.35
2276 2314 3.321111 ACACAGGTAGAAGTTGTCGACAT 59.679 43.478 20.80 4.07 33.76 3.06
2277 2315 4.202223 ACACAGGTAGAAGTTGTCGACATT 60.202 41.667 20.80 11.92 33.76 2.71
2278 2316 4.386049 CACAGGTAGAAGTTGTCGACATTC 59.614 45.833 20.80 20.07 33.76 2.67
2279 2317 4.281182 ACAGGTAGAAGTTGTCGACATTCT 59.719 41.667 28.17 28.17 33.76 2.40
2280 2318 4.623167 CAGGTAGAAGTTGTCGACATTCTG 59.377 45.833 30.96 18.45 33.76 3.02
2281 2319 3.927142 GGTAGAAGTTGTCGACATTCTGG 59.073 47.826 30.96 0.00 33.76 3.86
2282 2320 3.045601 AGAAGTTGTCGACATTCTGGG 57.954 47.619 25.99 0.00 31.00 4.45
2283 2321 2.632996 AGAAGTTGTCGACATTCTGGGA 59.367 45.455 25.99 6.67 31.00 4.37
2284 2322 3.261897 AGAAGTTGTCGACATTCTGGGAT 59.738 43.478 25.99 11.48 31.00 3.85
2285 2323 3.252974 AGTTGTCGACATTCTGGGATC 57.747 47.619 20.80 2.22 0.00 3.36
2286 2324 1.927174 GTTGTCGACATTCTGGGATCG 59.073 52.381 20.80 0.00 35.91 3.69
2287 2325 0.459899 TGTCGACATTCTGGGATCGG 59.540 55.000 15.76 0.00 35.31 4.18
2288 2326 0.249489 GTCGACATTCTGGGATCGGG 60.249 60.000 11.55 0.00 35.31 5.14
2289 2327 1.069765 CGACATTCTGGGATCGGGG 59.930 63.158 0.00 0.00 0.00 5.73
2290 2328 1.451936 GACATTCTGGGATCGGGGG 59.548 63.158 0.00 0.00 0.00 5.40
2307 2345 2.990479 GGTACCCAGACCTGCCTG 59.010 66.667 0.00 0.00 36.47 4.85
2308 2346 2.269241 GTACCCAGACCTGCCTGC 59.731 66.667 0.00 0.00 32.97 4.85
2309 2347 3.009115 TACCCAGACCTGCCTGCC 61.009 66.667 0.00 0.00 32.97 4.85
2310 2348 3.562681 TACCCAGACCTGCCTGCCT 62.563 63.158 0.00 0.00 32.97 4.75
2311 2349 2.176202 TACCCAGACCTGCCTGCCTA 62.176 60.000 0.00 0.00 32.97 3.93
2312 2350 2.586792 CCAGACCTGCCTGCCTAC 59.413 66.667 0.00 0.00 32.97 3.18
2313 2351 2.185350 CAGACCTGCCTGCCTACG 59.815 66.667 0.00 0.00 0.00 3.51
2314 2352 3.077556 AGACCTGCCTGCCTACGG 61.078 66.667 0.00 0.00 0.00 4.02
2344 2382 4.818863 TCCATCGACGGCCCGGTA 62.819 66.667 8.57 0.00 0.00 4.02
2345 2383 4.580551 CCATCGACGGCCCGGTAC 62.581 72.222 8.57 0.00 0.00 3.34
2358 2396 3.384348 GGTACGGTCCAGCTCCAA 58.616 61.111 0.00 0.00 0.00 3.53
2359 2397 1.218316 GGTACGGTCCAGCTCCAAG 59.782 63.158 0.00 0.00 0.00 3.61
2360 2398 1.218316 GTACGGTCCAGCTCCAAGG 59.782 63.158 0.00 0.00 0.00 3.61
2361 2399 1.077805 TACGGTCCAGCTCCAAGGA 59.922 57.895 0.00 0.00 0.00 3.36
2365 2403 3.700109 TCCAGCTCCAAGGACTCG 58.300 61.111 0.00 0.00 0.00 4.18
2366 2404 2.125350 CCAGCTCCAAGGACTCGC 60.125 66.667 0.00 0.00 0.00 5.03
2367 2405 2.659016 CAGCTCCAAGGACTCGCA 59.341 61.111 2.27 0.00 0.00 5.10
2368 2406 1.004560 CAGCTCCAAGGACTCGCAA 60.005 57.895 2.27 0.00 0.00 4.85
2369 2407 1.018226 CAGCTCCAAGGACTCGCAAG 61.018 60.000 2.27 0.00 0.00 4.01
2370 2408 2.394563 GCTCCAAGGACTCGCAAGC 61.395 63.158 0.00 0.00 37.18 4.01
2371 2409 1.004560 CTCCAAGGACTCGCAAGCA 60.005 57.895 0.00 0.00 37.18 3.91
2372 2410 0.603707 CTCCAAGGACTCGCAAGCAA 60.604 55.000 0.00 0.00 37.18 3.91
2373 2411 0.603707 TCCAAGGACTCGCAAGCAAG 60.604 55.000 0.00 0.00 37.18 4.01
2374 2412 0.603707 CCAAGGACTCGCAAGCAAGA 60.604 55.000 0.00 0.00 37.18 3.02
2375 2413 0.514691 CAAGGACTCGCAAGCAAGAC 59.485 55.000 0.00 0.00 37.18 3.01
2376 2414 0.603975 AAGGACTCGCAAGCAAGACC 60.604 55.000 0.00 0.00 37.18 3.85
2377 2415 2.035442 GGACTCGCAAGCAAGACCC 61.035 63.158 0.00 0.00 37.18 4.46
2378 2416 1.004440 GACTCGCAAGCAAGACCCT 60.004 57.895 0.00 0.00 37.18 4.34
2379 2417 1.004440 ACTCGCAAGCAAGACCCTC 60.004 57.895 0.00 0.00 37.18 4.30
2380 2418 2.048222 TCGCAAGCAAGACCCTCG 60.048 61.111 0.00 0.00 37.18 4.63
2381 2419 3.793144 CGCAAGCAAGACCCTCGC 61.793 66.667 0.00 0.00 0.00 5.03
2382 2420 3.793144 GCAAGCAAGACCCTCGCG 61.793 66.667 0.00 0.00 0.00 5.87
2383 2421 2.048222 CAAGCAAGACCCTCGCGA 60.048 61.111 9.26 9.26 0.00 5.87
2384 2422 2.097038 CAAGCAAGACCCTCGCGAG 61.097 63.158 29.06 29.06 0.00 5.03
2410 2448 3.479269 CCTCGCGAGGCAAACGAC 61.479 66.667 39.83 0.00 42.44 4.34
2411 2449 2.430921 CTCGCGAGGCAAACGACT 60.431 61.111 28.40 0.00 0.00 4.18
2412 2450 2.430244 TCGCGAGGCAAACGACTC 60.430 61.111 3.71 0.00 34.92 3.36
2413 2451 3.479269 CGCGAGGCAAACGACTCC 61.479 66.667 0.00 0.00 34.77 3.85
2414 2452 2.357034 GCGAGGCAAACGACTCCA 60.357 61.111 0.00 0.00 34.77 3.86
2415 2453 1.959226 GCGAGGCAAACGACTCCAA 60.959 57.895 0.00 0.00 34.77 3.53
2416 2454 1.901650 GCGAGGCAAACGACTCCAAG 61.902 60.000 0.00 0.00 34.77 3.61
2417 2455 0.319555 CGAGGCAAACGACTCCAAGA 60.320 55.000 0.00 0.00 34.77 3.02
2418 2456 1.149148 GAGGCAAACGACTCCAAGAC 58.851 55.000 0.00 0.00 31.69 3.01
2419 2457 0.250338 AGGCAAACGACTCCAAGACC 60.250 55.000 0.00 0.00 0.00 3.85
2420 2458 0.250338 GGCAAACGACTCCAAGACCT 60.250 55.000 0.00 0.00 0.00 3.85
2421 2459 1.001633 GGCAAACGACTCCAAGACCTA 59.998 52.381 0.00 0.00 0.00 3.08
2422 2460 2.067013 GCAAACGACTCCAAGACCTAC 58.933 52.381 0.00 0.00 0.00 3.18
2423 2461 2.685100 CAAACGACTCCAAGACCTACC 58.315 52.381 0.00 0.00 0.00 3.18
2424 2462 0.886563 AACGACTCCAAGACCTACCG 59.113 55.000 0.00 0.00 0.00 4.02
2425 2463 0.037303 ACGACTCCAAGACCTACCGA 59.963 55.000 0.00 0.00 0.00 4.69
2426 2464 0.733729 CGACTCCAAGACCTACCGAG 59.266 60.000 0.00 0.00 0.00 4.63
2437 2475 1.439644 CTACCGAGGAGCAGCTTCC 59.560 63.158 0.00 0.00 37.52 3.46
2438 2476 2.022240 CTACCGAGGAGCAGCTTCCC 62.022 65.000 0.00 0.00 38.02 3.97
2439 2477 4.521062 CCGAGGAGCAGCTTCCCG 62.521 72.222 0.00 0.00 38.02 5.14
2440 2478 3.452786 CGAGGAGCAGCTTCCCGA 61.453 66.667 0.00 0.00 38.02 5.14
2441 2479 2.498726 GAGGAGCAGCTTCCCGAG 59.501 66.667 0.00 0.00 38.02 4.63
2450 2488 2.124942 CTTCCCGAGCTTGCCTCC 60.125 66.667 0.00 0.00 37.27 4.30
2451 2489 2.607750 TTCCCGAGCTTGCCTCCT 60.608 61.111 0.00 0.00 37.27 3.69
2452 2490 2.866085 CTTCCCGAGCTTGCCTCCTG 62.866 65.000 0.00 0.00 37.27 3.86
2453 2491 3.393970 CCCGAGCTTGCCTCCTGA 61.394 66.667 0.00 0.00 37.27 3.86
2454 2492 2.186384 CCGAGCTTGCCTCCTGAG 59.814 66.667 0.00 0.00 37.27 3.35
2466 2504 2.322772 TCCTGAGGGACGGAGATCT 58.677 57.895 0.00 0.00 36.57 2.75
2467 2505 0.183971 TCCTGAGGGACGGAGATCTC 59.816 60.000 14.75 14.75 36.57 2.75
2468 2506 0.184933 CCTGAGGGACGGAGATCTCT 59.815 60.000 21.81 3.23 33.58 3.10
2469 2507 1.422024 CCTGAGGGACGGAGATCTCTA 59.578 57.143 21.81 0.00 33.58 2.43
2470 2508 2.041081 CCTGAGGGACGGAGATCTCTAT 59.959 54.545 21.81 10.55 33.58 1.98
2471 2509 3.081061 CTGAGGGACGGAGATCTCTATG 58.919 54.545 21.81 14.16 25.81 2.23
2472 2510 1.816224 GAGGGACGGAGATCTCTATGC 59.184 57.143 21.81 14.64 25.81 3.14
2473 2511 1.145945 AGGGACGGAGATCTCTATGCA 59.854 52.381 21.81 0.00 0.00 3.96
2474 2512 1.543802 GGGACGGAGATCTCTATGCAG 59.456 57.143 21.81 9.32 0.00 4.41
2475 2513 1.543802 GGACGGAGATCTCTATGCAGG 59.456 57.143 21.81 6.02 0.00 4.85
2476 2514 0.965439 ACGGAGATCTCTATGCAGGC 59.035 55.000 21.81 2.22 0.00 4.85
2477 2515 0.964700 CGGAGATCTCTATGCAGGCA 59.035 55.000 21.81 0.00 0.00 4.75
2478 2516 1.336702 CGGAGATCTCTATGCAGGCAC 60.337 57.143 21.81 0.80 0.00 5.01
2479 2517 1.001860 GGAGATCTCTATGCAGGCACC 59.998 57.143 21.81 0.00 0.00 5.01
2480 2518 1.001860 GAGATCTCTATGCAGGCACCC 59.998 57.143 15.80 0.00 0.00 4.61
2481 2519 0.761187 GATCTCTATGCAGGCACCCA 59.239 55.000 0.00 0.00 0.00 4.51
2482 2520 0.471617 ATCTCTATGCAGGCACCCAC 59.528 55.000 0.00 0.00 0.00 4.61
2483 2521 1.153086 CTCTATGCAGGCACCCACC 60.153 63.158 0.00 0.00 0.00 4.61
2484 2522 1.616327 TCTATGCAGGCACCCACCT 60.616 57.895 0.00 0.00 42.30 4.00
2485 2523 1.153086 CTATGCAGGCACCCACCTC 60.153 63.158 0.00 0.00 38.26 3.85
2486 2524 2.930385 CTATGCAGGCACCCACCTCG 62.930 65.000 0.00 0.00 38.26 4.63
2505 2543 3.993234 GAGGCGCGCGATGACATG 61.993 66.667 37.18 1.14 0.00 3.21
2506 2544 4.512961 AGGCGCGCGATGACATGA 62.513 61.111 37.18 0.00 0.00 3.07
2507 2545 3.993234 GGCGCGCGATGACATGAG 61.993 66.667 37.18 0.00 0.00 2.90
2508 2546 4.640113 GCGCGCGATGACATGAGC 62.640 66.667 37.18 7.53 0.00 4.26
2513 2551 2.890941 GCGATGACATGAGCGATGA 58.109 52.632 0.00 0.00 35.80 2.92
2514 2552 0.506080 GCGATGACATGAGCGATGAC 59.494 55.000 0.00 0.88 35.80 3.06
2515 2553 1.843992 CGATGACATGAGCGATGACA 58.156 50.000 0.00 6.16 40.35 3.58
2516 2554 1.520174 CGATGACATGAGCGATGACAC 59.480 52.381 0.00 1.68 39.15 3.67
2517 2555 2.543641 GATGACATGAGCGATGACACA 58.456 47.619 0.00 4.05 39.15 3.72
2518 2556 2.453983 TGACATGAGCGATGACACAA 57.546 45.000 0.00 0.00 32.66 3.33
2519 2557 2.068519 TGACATGAGCGATGACACAAC 58.931 47.619 0.00 0.00 32.66 3.32
2520 2558 1.059692 GACATGAGCGATGACACAACG 59.940 52.381 0.00 0.00 35.80 4.10
2524 2562 2.850404 GCGATGACACAACGCGAA 59.150 55.556 15.93 0.00 44.47 4.70
2525 2563 1.225475 GCGATGACACAACGCGAAG 60.225 57.895 15.93 7.13 44.47 3.79
2526 2564 1.416049 CGATGACACAACGCGAAGG 59.584 57.895 15.93 3.63 0.00 3.46
2527 2565 1.282248 CGATGACACAACGCGAAGGT 61.282 55.000 15.93 4.96 0.00 3.50
2528 2566 0.865769 GATGACACAACGCGAAGGTT 59.134 50.000 15.93 0.00 0.00 3.50
2529 2567 1.263217 GATGACACAACGCGAAGGTTT 59.737 47.619 15.93 0.00 0.00 3.27
2530 2568 1.088306 TGACACAACGCGAAGGTTTT 58.912 45.000 15.93 0.00 0.00 2.43
2531 2569 1.062880 TGACACAACGCGAAGGTTTTC 59.937 47.619 15.93 7.00 0.00 2.29
2532 2570 1.329599 GACACAACGCGAAGGTTTTCT 59.670 47.619 15.93 0.00 0.00 2.52
2533 2571 2.540931 GACACAACGCGAAGGTTTTCTA 59.459 45.455 15.93 0.00 0.00 2.10
2534 2572 2.542595 ACACAACGCGAAGGTTTTCTAG 59.457 45.455 15.93 0.00 0.00 2.43
2535 2573 2.542595 CACAACGCGAAGGTTTTCTAGT 59.457 45.455 15.93 0.00 0.00 2.57
2536 2574 3.001939 CACAACGCGAAGGTTTTCTAGTT 59.998 43.478 15.93 0.00 33.73 2.24
2537 2575 3.624410 ACAACGCGAAGGTTTTCTAGTTT 59.376 39.130 15.93 0.00 32.27 2.66
2538 2576 4.095334 ACAACGCGAAGGTTTTCTAGTTTT 59.905 37.500 15.93 0.00 32.27 2.43
2539 2577 4.888038 ACGCGAAGGTTTTCTAGTTTTT 57.112 36.364 15.93 0.00 0.00 1.94
2581 2619 7.670009 TTTTCATGCCTATTTCAAAATGTGG 57.330 32.000 0.00 2.57 0.00 4.17
2582 2620 5.999205 TCATGCCTATTTCAAAATGTGGT 57.001 34.783 0.00 0.00 0.00 4.16
2583 2621 5.964758 TCATGCCTATTTCAAAATGTGGTC 58.035 37.500 0.00 0.11 0.00 4.02
2584 2622 5.479724 TCATGCCTATTTCAAAATGTGGTCA 59.520 36.000 0.00 4.50 0.00 4.02
2585 2623 5.798125 TGCCTATTTCAAAATGTGGTCAA 57.202 34.783 0.00 0.00 0.00 3.18
2586 2624 6.166984 TGCCTATTTCAAAATGTGGTCAAA 57.833 33.333 0.00 0.00 0.00 2.69
2587 2625 6.586344 TGCCTATTTCAAAATGTGGTCAAAA 58.414 32.000 0.00 0.00 0.00 2.44
2588 2626 7.222872 TGCCTATTTCAAAATGTGGTCAAAAT 58.777 30.769 0.00 0.00 0.00 1.82
2589 2627 8.370940 TGCCTATTTCAAAATGTGGTCAAAATA 58.629 29.630 0.00 0.00 0.00 1.40
2590 2628 9.213799 GCCTATTTCAAAATGTGGTCAAAATAA 57.786 29.630 0.00 0.00 0.00 1.40
2594 2632 7.976135 TTCAAAATGTGGTCAAAATAATGGG 57.024 32.000 0.00 0.00 0.00 4.00
2595 2633 5.936956 TCAAAATGTGGTCAAAATAATGGGC 59.063 36.000 0.00 0.00 0.00 5.36
2596 2634 5.495926 AAATGTGGTCAAAATAATGGGCA 57.504 34.783 0.00 0.00 0.00 5.36
2597 2635 5.697082 AATGTGGTCAAAATAATGGGCAT 57.303 34.783 0.00 0.00 0.00 4.40
2598 2636 4.468765 TGTGGTCAAAATAATGGGCATG 57.531 40.909 0.00 0.00 0.00 4.06
2599 2637 3.197333 TGTGGTCAAAATAATGGGCATGG 59.803 43.478 0.00 0.00 0.00 3.66
2600 2638 2.170187 TGGTCAAAATAATGGGCATGGC 59.830 45.455 11.56 11.56 0.00 4.40
2611 2649 4.916358 GCATGGCCATTCCTAGCT 57.084 55.556 17.92 0.00 34.14 3.32
2613 2651 1.528129 GCATGGCCATTCCTAGCTAC 58.472 55.000 17.92 0.00 34.14 3.58
2614 2652 1.072965 GCATGGCCATTCCTAGCTACT 59.927 52.381 17.92 0.00 34.14 2.57
2615 2653 2.487986 GCATGGCCATTCCTAGCTACTT 60.488 50.000 17.92 0.00 34.14 2.24
2616 2654 3.144506 CATGGCCATTCCTAGCTACTTG 58.855 50.000 17.92 0.00 35.26 3.16
2617 2655 2.196595 TGGCCATTCCTAGCTACTTGT 58.803 47.619 0.00 0.00 35.26 3.16
2618 2656 2.576191 TGGCCATTCCTAGCTACTTGTT 59.424 45.455 0.00 0.00 35.26 2.83
2619 2657 2.945668 GGCCATTCCTAGCTACTTGTTG 59.054 50.000 0.00 0.00 0.00 3.33
2620 2658 3.370527 GGCCATTCCTAGCTACTTGTTGA 60.371 47.826 0.00 0.00 0.00 3.18
2621 2659 4.261801 GCCATTCCTAGCTACTTGTTGAA 58.738 43.478 0.00 0.00 0.00 2.69
2622 2660 4.884164 GCCATTCCTAGCTACTTGTTGAAT 59.116 41.667 0.00 0.00 0.00 2.57
2623 2661 5.008118 GCCATTCCTAGCTACTTGTTGAATC 59.992 44.000 0.00 0.00 0.00 2.52
2624 2662 6.115446 CCATTCCTAGCTACTTGTTGAATCA 58.885 40.000 0.00 0.00 0.00 2.57
2625 2663 6.769822 CCATTCCTAGCTACTTGTTGAATCAT 59.230 38.462 0.00 0.00 0.00 2.45
2626 2664 7.255035 CCATTCCTAGCTACTTGTTGAATCATG 60.255 40.741 0.00 0.00 0.00 3.07
2627 2665 5.674525 TCCTAGCTACTTGTTGAATCATGG 58.325 41.667 0.00 0.00 0.00 3.66
2628 2666 5.425217 TCCTAGCTACTTGTTGAATCATGGA 59.575 40.000 0.00 0.00 0.00 3.41
2629 2667 6.070251 TCCTAGCTACTTGTTGAATCATGGAA 60.070 38.462 0.00 0.00 0.00 3.53
2630 2668 6.599244 CCTAGCTACTTGTTGAATCATGGAAA 59.401 38.462 0.00 0.00 0.00 3.13
2631 2669 6.899393 AGCTACTTGTTGAATCATGGAAAA 57.101 33.333 0.00 0.00 0.00 2.29
2632 2670 7.288810 AGCTACTTGTTGAATCATGGAAAAA 57.711 32.000 0.00 0.00 0.00 1.94
2656 2694 4.963276 TGGCGTTTCTCCAATGAAATAG 57.037 40.909 0.00 0.00 38.09 1.73
2657 2695 4.331968 TGGCGTTTCTCCAATGAAATAGT 58.668 39.130 0.00 0.00 38.09 2.12
2658 2696 4.764823 TGGCGTTTCTCCAATGAAATAGTT 59.235 37.500 0.00 0.00 38.09 2.24
2659 2697 5.941058 TGGCGTTTCTCCAATGAAATAGTTA 59.059 36.000 0.00 0.00 38.09 2.24
2660 2698 6.601613 TGGCGTTTCTCCAATGAAATAGTTAT 59.398 34.615 0.00 0.00 38.09 1.89
2661 2699 7.122055 TGGCGTTTCTCCAATGAAATAGTTATT 59.878 33.333 0.00 0.00 38.09 1.40
2662 2700 7.973944 GGCGTTTCTCCAATGAAATAGTTATTT 59.026 33.333 0.00 0.00 38.09 1.40
2663 2701 9.353999 GCGTTTCTCCAATGAAATAGTTATTTT 57.646 29.630 0.00 0.00 38.09 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.665165 TGTGCCTGACAGACCATTTTT 58.335 42.857 3.32 0.00 0.00 1.94
11 12 2.363306 TGTGCCTGACAGACCATTTT 57.637 45.000 3.32 0.00 0.00 1.82
12 13 2.592102 ATGTGCCTGACAGACCATTT 57.408 45.000 3.32 0.00 38.23 2.32
13 14 3.434167 GGATATGTGCCTGACAGACCATT 60.434 47.826 3.32 0.00 38.23 3.16
14 15 2.105477 GGATATGTGCCTGACAGACCAT 59.895 50.000 3.32 5.49 38.23 3.55
15 16 1.486310 GGATATGTGCCTGACAGACCA 59.514 52.381 3.32 0.00 38.23 4.02
16 17 1.486310 TGGATATGTGCCTGACAGACC 59.514 52.381 3.32 0.00 38.23 3.85
17 18 2.988010 TGGATATGTGCCTGACAGAC 57.012 50.000 3.32 0.00 38.23 3.51
18 19 5.830799 ATATTGGATATGTGCCTGACAGA 57.169 39.130 3.32 0.00 38.23 3.41
19 20 6.466812 TGTATATTGGATATGTGCCTGACAG 58.533 40.000 0.00 0.00 38.23 3.51
20 21 6.432403 TGTATATTGGATATGTGCCTGACA 57.568 37.500 0.00 0.00 39.53 3.58
21 22 8.478066 TCTATGTATATTGGATATGTGCCTGAC 58.522 37.037 0.00 0.00 0.00 3.51
22 23 8.608185 TCTATGTATATTGGATATGTGCCTGA 57.392 34.615 0.00 0.00 0.00 3.86
23 24 9.322773 CTTCTATGTATATTGGATATGTGCCTG 57.677 37.037 0.00 0.00 0.00 4.85
24 25 7.989741 GCTTCTATGTATATTGGATATGTGCCT 59.010 37.037 0.00 0.00 0.00 4.75
25 26 7.770433 TGCTTCTATGTATATTGGATATGTGCC 59.230 37.037 0.00 0.00 0.00 5.01
26 27 8.722480 TGCTTCTATGTATATTGGATATGTGC 57.278 34.615 0.00 0.00 0.00 4.57
28 29 9.896645 CCTTGCTTCTATGTATATTGGATATGT 57.103 33.333 0.00 0.00 0.00 2.29
52 53 9.681062 TCCGACTTTCTTTTATTTCAATATCCT 57.319 29.630 0.00 0.00 0.00 3.24
57 58 8.630037 ACACTTCCGACTTTCTTTTATTTCAAT 58.370 29.630 0.00 0.00 0.00 2.57
58 59 7.992008 ACACTTCCGACTTTCTTTTATTTCAA 58.008 30.769 0.00 0.00 0.00 2.69
59 60 7.562454 ACACTTCCGACTTTCTTTTATTTCA 57.438 32.000 0.00 0.00 0.00 2.69
60 61 9.940166 TTAACACTTCCGACTTTCTTTTATTTC 57.060 29.630 0.00 0.00 0.00 2.17
132 133 7.377766 AGCACATATAACGTGTCTCATTTTT 57.622 32.000 0.00 0.00 36.71 1.94
133 134 6.985188 AGCACATATAACGTGTCTCATTTT 57.015 33.333 0.00 0.00 36.71 1.82
134 135 6.183360 CCAAGCACATATAACGTGTCTCATTT 60.183 38.462 0.00 0.00 36.71 2.32
135 136 5.294306 CCAAGCACATATAACGTGTCTCATT 59.706 40.000 0.00 0.00 36.71 2.57
136 137 4.811024 CCAAGCACATATAACGTGTCTCAT 59.189 41.667 0.00 0.00 36.71 2.90
137 138 4.180817 CCAAGCACATATAACGTGTCTCA 58.819 43.478 0.00 0.00 36.71 3.27
138 139 3.555956 CCCAAGCACATATAACGTGTCTC 59.444 47.826 0.00 0.00 36.71 3.36
139 140 3.196901 TCCCAAGCACATATAACGTGTCT 59.803 43.478 0.00 3.43 36.71 3.41
140 141 3.308866 GTCCCAAGCACATATAACGTGTC 59.691 47.826 0.00 1.64 36.71 3.67
141 142 3.055385 AGTCCCAAGCACATATAACGTGT 60.055 43.478 0.00 0.00 36.71 4.49
142 143 3.531538 AGTCCCAAGCACATATAACGTG 58.468 45.455 0.00 2.11 37.43 4.49
143 144 3.906720 AGTCCCAAGCACATATAACGT 57.093 42.857 0.00 0.00 0.00 3.99
144 145 3.242739 GCAAGTCCCAAGCACATATAACG 60.243 47.826 0.00 0.00 0.00 3.18
145 146 3.694072 TGCAAGTCCCAAGCACATATAAC 59.306 43.478 0.00 0.00 32.55 1.89
146 147 3.961849 TGCAAGTCCCAAGCACATATAA 58.038 40.909 0.00 0.00 32.55 0.98
147 148 3.643199 TGCAAGTCCCAAGCACATATA 57.357 42.857 0.00 0.00 32.55 0.86
148 149 2.512692 TGCAAGTCCCAAGCACATAT 57.487 45.000 0.00 0.00 32.55 1.78
150 151 4.927557 TGCAAGTCCCAAGCACAT 57.072 50.000 0.00 0.00 32.55 3.21
153 154 1.529010 CCAGTGCAAGTCCCAAGCA 60.529 57.895 0.00 0.00 35.63 3.91
154 155 0.610232 ATCCAGTGCAAGTCCCAAGC 60.610 55.000 0.00 0.00 0.00 4.01
155 156 1.171308 CATCCAGTGCAAGTCCCAAG 58.829 55.000 0.00 0.00 0.00 3.61
156 157 0.251297 CCATCCAGTGCAAGTCCCAA 60.251 55.000 0.00 0.00 0.00 4.12
157 158 1.133181 TCCATCCAGTGCAAGTCCCA 61.133 55.000 0.00 0.00 0.00 4.37
158 159 0.257039 ATCCATCCAGTGCAAGTCCC 59.743 55.000 0.00 0.00 0.00 4.46
159 160 1.386533 CATCCATCCAGTGCAAGTCC 58.613 55.000 0.00 0.00 0.00 3.85
160 161 1.386533 CCATCCATCCAGTGCAAGTC 58.613 55.000 0.00 0.00 0.00 3.01
161 162 0.033796 CCCATCCATCCAGTGCAAGT 60.034 55.000 0.00 0.00 0.00 3.16
162 163 0.033796 ACCCATCCATCCAGTGCAAG 60.034 55.000 0.00 0.00 0.00 4.01
163 164 0.323633 CACCCATCCATCCAGTGCAA 60.324 55.000 0.00 0.00 0.00 4.08
164 165 1.303948 CACCCATCCATCCAGTGCA 59.696 57.895 0.00 0.00 0.00 4.57
165 166 0.323725 AACACCCATCCATCCAGTGC 60.324 55.000 0.00 0.00 31.58 4.40
166 167 2.094675 GAAACACCCATCCATCCAGTG 58.905 52.381 0.00 0.00 34.61 3.66
167 168 1.710244 TGAAACACCCATCCATCCAGT 59.290 47.619 0.00 0.00 0.00 4.00
168 169 2.094675 GTGAAACACCCATCCATCCAG 58.905 52.381 0.00 0.00 36.32 3.86
169 170 1.710244 AGTGAAACACCCATCCATCCA 59.290 47.619 0.00 0.00 41.43 3.41
170 171 2.514458 AGTGAAACACCCATCCATCC 57.486 50.000 0.00 0.00 41.43 3.51
171 172 4.321974 GGAAAAGTGAAACACCCATCCATC 60.322 45.833 0.00 0.00 41.43 3.51
172 173 3.578282 GGAAAAGTGAAACACCCATCCAT 59.422 43.478 0.00 0.00 41.43 3.41
173 174 2.962421 GGAAAAGTGAAACACCCATCCA 59.038 45.455 0.00 0.00 41.43 3.41
174 175 2.299013 GGGAAAAGTGAAACACCCATCC 59.701 50.000 0.00 0.00 41.43 3.51
175 176 2.299013 GGGGAAAAGTGAAACACCCATC 59.701 50.000 0.00 0.00 41.43 3.51
176 177 2.325484 GGGGAAAAGTGAAACACCCAT 58.675 47.619 0.00 0.00 41.43 4.00
177 178 1.689892 GGGGGAAAAGTGAAACACCCA 60.690 52.381 0.00 0.00 41.43 4.51
178 179 1.045407 GGGGGAAAAGTGAAACACCC 58.955 55.000 0.00 0.00 41.43 4.61
179 180 2.082140 AGGGGGAAAAGTGAAACACC 57.918 50.000 0.00 0.00 41.43 4.16
180 181 3.028130 TGAAGGGGGAAAAGTGAAACAC 58.972 45.455 0.00 0.00 41.43 3.32
181 182 3.390175 TGAAGGGGGAAAAGTGAAACA 57.610 42.857 0.00 0.00 41.43 2.83
182 183 5.077564 AGTATGAAGGGGGAAAAGTGAAAC 58.922 41.667 0.00 0.00 0.00 2.78
183 184 5.074515 AGAGTATGAAGGGGGAAAAGTGAAA 59.925 40.000 0.00 0.00 0.00 2.69
184 185 4.601857 AGAGTATGAAGGGGGAAAAGTGAA 59.398 41.667 0.00 0.00 0.00 3.18
185 186 4.019321 CAGAGTATGAAGGGGGAAAAGTGA 60.019 45.833 0.00 0.00 0.00 3.41
186 187 4.263506 ACAGAGTATGAAGGGGGAAAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
187 188 3.916989 ACAGAGTATGAAGGGGGAAAAGT 59.083 43.478 0.00 0.00 0.00 2.66
188 189 4.576330 ACAGAGTATGAAGGGGGAAAAG 57.424 45.455 0.00 0.00 0.00 2.27
189 190 5.333566 AAACAGAGTATGAAGGGGGAAAA 57.666 39.130 0.00 0.00 0.00 2.29
190 191 5.163034 TGAAAACAGAGTATGAAGGGGGAAA 60.163 40.000 0.00 0.00 0.00 3.13
191 192 4.352595 TGAAAACAGAGTATGAAGGGGGAA 59.647 41.667 0.00 0.00 0.00 3.97
192 193 3.913799 TGAAAACAGAGTATGAAGGGGGA 59.086 43.478 0.00 0.00 0.00 4.81
193 194 4.301072 TGAAAACAGAGTATGAAGGGGG 57.699 45.455 0.00 0.00 0.00 5.40
194 195 4.096984 GCATGAAAACAGAGTATGAAGGGG 59.903 45.833 0.00 0.00 0.00 4.79
195 196 4.096984 GGCATGAAAACAGAGTATGAAGGG 59.903 45.833 0.00 0.00 0.00 3.95
196 197 4.701651 TGGCATGAAAACAGAGTATGAAGG 59.298 41.667 0.00 0.00 0.00 3.46
197 198 5.181811 TGTGGCATGAAAACAGAGTATGAAG 59.818 40.000 0.00 0.00 0.00 3.02
198 199 5.069318 TGTGGCATGAAAACAGAGTATGAA 58.931 37.500 0.00 0.00 0.00 2.57
199 200 4.650734 TGTGGCATGAAAACAGAGTATGA 58.349 39.130 0.00 0.00 0.00 2.15
200 201 5.375417 TTGTGGCATGAAAACAGAGTATG 57.625 39.130 0.00 0.00 0.00 2.39
201 202 6.403866 TTTTGTGGCATGAAAACAGAGTAT 57.596 33.333 0.00 0.00 0.00 2.12
202 203 5.843673 TTTTGTGGCATGAAAACAGAGTA 57.156 34.783 0.00 0.00 0.00 2.59
203 204 4.734398 TTTTGTGGCATGAAAACAGAGT 57.266 36.364 0.00 0.00 0.00 3.24
204 205 7.712264 TTTATTTTGTGGCATGAAAACAGAG 57.288 32.000 0.00 0.00 0.00 3.35
205 206 9.202273 GTATTTATTTTGTGGCATGAAAACAGA 57.798 29.630 0.00 0.00 0.00 3.41
206 207 8.986847 TGTATTTATTTTGTGGCATGAAAACAG 58.013 29.630 0.00 0.00 0.00 3.16
207 208 8.893219 TGTATTTATTTTGTGGCATGAAAACA 57.107 26.923 0.00 0.00 0.00 2.83
212 213 9.800433 CTTGTATGTATTTATTTTGTGGCATGA 57.200 29.630 0.00 0.00 0.00 3.07
213 214 9.585099 ACTTGTATGTATTTATTTTGTGGCATG 57.415 29.630 0.00 0.00 0.00 4.06
226 227 9.042008 CGGCTAGTCAATAACTTGTATGTATTT 57.958 33.333 0.00 0.00 39.55 1.40
227 228 8.202137 ACGGCTAGTCAATAACTTGTATGTATT 58.798 33.333 0.00 0.00 39.55 1.89
228 229 7.652105 CACGGCTAGTCAATAACTTGTATGTAT 59.348 37.037 0.00 0.00 39.55 2.29
229 230 6.976349 CACGGCTAGTCAATAACTTGTATGTA 59.024 38.462 0.00 0.00 39.55 2.29
230 231 5.810587 CACGGCTAGTCAATAACTTGTATGT 59.189 40.000 0.00 0.00 39.55 2.29
231 232 5.810587 ACACGGCTAGTCAATAACTTGTATG 59.189 40.000 0.00 0.00 39.55 2.39
232 233 5.810587 CACACGGCTAGTCAATAACTTGTAT 59.189 40.000 0.00 0.00 39.55 2.29
233 234 5.047872 TCACACGGCTAGTCAATAACTTGTA 60.048 40.000 0.00 0.00 39.55 2.41
234 235 3.994392 CACACGGCTAGTCAATAACTTGT 59.006 43.478 0.00 0.00 39.55 3.16
235 236 4.242475 TCACACGGCTAGTCAATAACTTG 58.758 43.478 0.00 0.00 39.55 3.16
236 237 4.530710 TCACACGGCTAGTCAATAACTT 57.469 40.909 0.00 0.00 39.55 2.66
237 238 4.530710 TTCACACGGCTAGTCAATAACT 57.469 40.909 0.00 0.00 42.33 2.24
238 239 4.494199 GCATTCACACGGCTAGTCAATAAC 60.494 45.833 0.00 0.00 0.00 1.89
239 240 3.621268 GCATTCACACGGCTAGTCAATAA 59.379 43.478 0.00 0.00 0.00 1.40
240 241 3.194861 GCATTCACACGGCTAGTCAATA 58.805 45.455 0.00 0.00 0.00 1.90
241 242 2.009774 GCATTCACACGGCTAGTCAAT 58.990 47.619 0.00 0.00 0.00 2.57
242 243 1.270571 TGCATTCACACGGCTAGTCAA 60.271 47.619 0.00 0.00 0.00 3.18
243 244 0.320050 TGCATTCACACGGCTAGTCA 59.680 50.000 0.00 0.00 0.00 3.41
244 245 0.721718 GTGCATTCACACGGCTAGTC 59.278 55.000 0.00 0.00 42.66 2.59
245 246 2.840974 GTGCATTCACACGGCTAGT 58.159 52.632 0.00 0.00 42.66 2.57
252 253 0.040425 GTCAACCCGTGCATTCACAC 60.040 55.000 0.00 0.00 43.28 3.82
253 254 1.502990 CGTCAACCCGTGCATTCACA 61.503 55.000 0.00 0.00 43.28 3.58
254 255 1.206578 CGTCAACCCGTGCATTCAC 59.793 57.895 0.00 0.00 39.78 3.18
255 256 1.069935 TCGTCAACCCGTGCATTCA 59.930 52.632 0.00 0.00 0.00 2.57
256 257 0.949105 AGTCGTCAACCCGTGCATTC 60.949 55.000 0.00 0.00 0.00 2.67
257 258 0.319083 TAGTCGTCAACCCGTGCATT 59.681 50.000 0.00 0.00 0.00 3.56
258 259 0.108804 CTAGTCGTCAACCCGTGCAT 60.109 55.000 0.00 0.00 0.00 3.96
259 260 1.287815 CTAGTCGTCAACCCGTGCA 59.712 57.895 0.00 0.00 0.00 4.57
260 261 1.007336 CACTAGTCGTCAACCCGTGC 61.007 60.000 0.00 0.00 0.00 5.34
261 262 0.594602 TCACTAGTCGTCAACCCGTG 59.405 55.000 0.00 0.00 32.62 4.94
262 263 1.201647 CATCACTAGTCGTCAACCCGT 59.798 52.381 0.00 0.00 0.00 5.28
263 264 1.909376 CATCACTAGTCGTCAACCCG 58.091 55.000 0.00 0.00 0.00 5.28
264 265 1.067142 TGCATCACTAGTCGTCAACCC 60.067 52.381 0.00 0.00 0.00 4.11
265 266 2.363788 TGCATCACTAGTCGTCAACC 57.636 50.000 0.00 0.00 0.00 3.77
266 267 5.980116 AGATTATGCATCACTAGTCGTCAAC 59.020 40.000 0.19 0.00 33.75 3.18
267 268 6.149129 AGATTATGCATCACTAGTCGTCAA 57.851 37.500 0.19 0.00 33.75 3.18
268 269 5.774498 AGATTATGCATCACTAGTCGTCA 57.226 39.130 0.19 0.00 33.75 4.35
269 270 5.107683 GCAAGATTATGCATCACTAGTCGTC 60.108 44.000 0.19 0.00 45.70 4.20
270 271 4.747108 GCAAGATTATGCATCACTAGTCGT 59.253 41.667 0.19 0.00 45.70 4.34
271 272 5.261370 GCAAGATTATGCATCACTAGTCG 57.739 43.478 0.19 0.00 45.70 4.18
326 327 4.892934 AGAGTGGATAGTTCATCTCCAGAC 59.107 45.833 0.00 0.00 39.66 3.51
344 345 4.221703 ACTGGGTAGTCATCTCAAAGAGTG 59.778 45.833 0.00 0.00 28.79 3.51
347 348 5.827756 TCTACTGGGTAGTCATCTCAAAGA 58.172 41.667 4.89 0.00 37.41 2.52
353 354 5.194473 TCAACTCTACTGGGTAGTCATCT 57.806 43.478 4.89 0.00 37.41 2.90
372 373 5.482006 TGAGATCGAAGAAGAAAGCATCAA 58.518 37.500 0.00 0.00 43.58 2.57
378 379 6.522510 GCAACAATTGAGATCGAAGAAGAAAG 59.477 38.462 13.59 0.00 43.58 2.62
379 380 6.373779 GCAACAATTGAGATCGAAGAAGAAA 58.626 36.000 13.59 0.00 43.58 2.52
384 385 2.672874 CGGCAACAATTGAGATCGAAGA 59.327 45.455 13.59 0.00 45.75 2.87
388 389 0.729116 AGCGGCAACAATTGAGATCG 59.271 50.000 13.59 11.32 0.00 3.69
400 401 1.437573 CGAGACTATCCAGCGGCAA 59.562 57.895 1.45 0.00 0.00 4.52
403 404 1.360551 CACCGAGACTATCCAGCGG 59.639 63.158 0.00 0.00 46.83 5.52
413 414 0.527817 CCGCAGTATTCCACCGAGAC 60.528 60.000 0.00 0.00 0.00 3.36
417 418 3.261951 CGCCGCAGTATTCCACCG 61.262 66.667 0.00 0.00 0.00 4.94
432 433 3.404141 GAGTCTCAGAGGTCGCCGC 62.404 68.421 0.00 0.00 0.00 6.53
436 437 4.305011 ACGGAGTCTCAGAGGTCG 57.695 61.111 7.02 0.00 29.74 4.79
470 471 2.975489 CCAAGCCTCATACTGGGTCTAT 59.025 50.000 0.00 0.00 33.76 1.98
486 487 3.373565 CCGAAGCCCCAACCAAGC 61.374 66.667 0.00 0.00 0.00 4.01
498 499 7.148137 ACCAAAGCCTAACATATAAAACCGAAG 60.148 37.037 0.00 0.00 0.00 3.79
500 501 6.094325 CACCAAAGCCTAACATATAAAACCGA 59.906 38.462 0.00 0.00 0.00 4.69
503 504 5.741982 CGCACCAAAGCCTAACATATAAAAC 59.258 40.000 0.00 0.00 0.00 2.43
504 505 5.648526 TCGCACCAAAGCCTAACATATAAAA 59.351 36.000 0.00 0.00 0.00 1.52
509 510 2.627945 CTCGCACCAAAGCCTAACATA 58.372 47.619 0.00 0.00 0.00 2.29
526 527 3.057734 GCCGAATACCAAATAGACCTCG 58.942 50.000 0.00 0.00 0.00 4.63
546 547 2.109126 GGGTGCCGAATGTCTGAGC 61.109 63.158 0.00 0.00 0.00 4.26
550 551 1.299976 GAAGGGGTGCCGAATGTCT 59.700 57.895 0.00 0.00 0.00 3.41
551 552 0.394352 ATGAAGGGGTGCCGAATGTC 60.394 55.000 0.00 0.00 0.00 3.06
557 558 1.002134 AGTTGATGAAGGGGTGCCG 60.002 57.895 0.00 0.00 0.00 5.69
558 559 0.967380 CCAGTTGATGAAGGGGTGCC 60.967 60.000 0.00 0.00 0.00 5.01
566 567 3.118261 GCCACTCCTATCCAGTTGATGAA 60.118 47.826 0.00 0.00 34.76 2.57
614 626 6.478016 ACAAAGACCTTACAAAGTAAGACGTC 59.522 38.462 16.27 7.70 0.00 4.34
616 628 6.477688 TCACAAAGACCTTACAAAGTAAGACG 59.522 38.462 16.27 5.40 0.00 4.18
671 683 1.273495 ACCTCTGGCCTCTTCATCTGA 60.273 52.381 3.32 0.00 0.00 3.27
674 686 1.198713 TGACCTCTGGCCTCTTCATC 58.801 55.000 3.32 0.00 0.00 2.92
678 690 0.043940 AGGATGACCTCTGGCCTCTT 59.956 55.000 3.32 0.00 44.13 2.85
680 692 4.390341 AGGATGACCTCTGGCCTC 57.610 61.111 3.32 0.00 44.13 4.70
717 729 1.130561 GCAACTGAAACTATCCCGTGC 59.869 52.381 0.00 0.00 0.00 5.34
719 731 2.301870 TGAGCAACTGAAACTATCCCGT 59.698 45.455 0.00 0.00 0.00 5.28
720 732 2.972625 TGAGCAACTGAAACTATCCCG 58.027 47.619 0.00 0.00 0.00 5.14
732 744 5.806654 ATTACAAACCCAAATGAGCAACT 57.193 34.783 0.00 0.00 0.00 3.16
759 771 8.956426 TGAAATTCTCTCAACTACAAACACTTT 58.044 29.630 0.00 0.00 0.00 2.66
767 779 6.352016 AGAGCTGAAATTCTCTCAACTACA 57.648 37.500 14.53 0.00 34.83 2.74
791 803 6.431543 TCCCTAAAACGCAAACAATCAGATTA 59.568 34.615 0.00 0.00 0.00 1.75
793 805 4.764823 TCCCTAAAACGCAAACAATCAGAT 59.235 37.500 0.00 0.00 0.00 2.90
799 811 4.722361 AAGTTCCCTAAAACGCAAACAA 57.278 36.364 0.00 0.00 34.27 2.83
806 818 5.055642 GGGATCAAAAGTTCCCTAAAACG 57.944 43.478 0.63 0.00 46.91 3.60
828 840 1.942657 CGGGCTACATCAACAATCCAG 59.057 52.381 0.00 0.00 0.00 3.86
829 841 1.408127 CCGGGCTACATCAACAATCCA 60.408 52.381 0.00 0.00 0.00 3.41
840 852 1.001888 TACCATCCACCGGGCTACA 59.998 57.895 6.32 0.00 0.00 2.74
845 857 0.759436 AGCTAGTACCATCCACCGGG 60.759 60.000 6.32 0.00 0.00 5.73
889 924 8.490311 TCTTACAATTTTGAATGAAAGGGGTTT 58.510 29.630 0.00 0.00 0.00 3.27
890 925 8.028652 TCTTACAATTTTGAATGAAAGGGGTT 57.971 30.769 0.00 0.00 0.00 4.11
908 943 4.569653 CCAGGAACCCATGGAATCTTACAA 60.570 45.833 15.22 0.00 39.02 2.41
909 944 3.053693 CCAGGAACCCATGGAATCTTACA 60.054 47.826 15.22 0.00 39.02 2.41
914 949 0.259938 AGCCAGGAACCCATGGAATC 59.740 55.000 15.22 10.77 39.02 2.52
915 950 0.032813 CAGCCAGGAACCCATGGAAT 60.033 55.000 15.22 0.01 39.02 3.01
916 951 1.383799 CAGCCAGGAACCCATGGAA 59.616 57.895 15.22 0.00 39.02 3.53
920 955 2.971598 CGACCAGCCAGGAACCCAT 61.972 63.158 0.00 0.00 41.22 4.00
921 956 3.636231 CGACCAGCCAGGAACCCA 61.636 66.667 0.00 0.00 41.22 4.51
942 977 0.806102 CAGCCACACCTATTCGACGG 60.806 60.000 0.00 0.00 0.00 4.79
944 979 1.090052 GCCAGCCACACCTATTCGAC 61.090 60.000 0.00 0.00 0.00 4.20
946 981 1.091771 CAGCCAGCCACACCTATTCG 61.092 60.000 0.00 0.00 0.00 3.34
987 1022 6.141083 GCCCATATATAGTACCCATCCACTA 58.859 44.000 0.00 0.00 0.00 2.74
988 1023 4.969359 GCCCATATATAGTACCCATCCACT 59.031 45.833 0.00 0.00 0.00 4.00
989 1024 4.719773 TGCCCATATATAGTACCCATCCAC 59.280 45.833 0.00 0.00 0.00 4.02
1012 1047 1.601162 CGCTATTGCCCACGTACGTAT 60.601 52.381 22.34 13.04 35.36 3.06
1053 1088 5.047164 TGTGAGATTTGCATGGTGCTATTTT 60.047 36.000 3.41 0.00 45.31 1.82
1075 1110 0.250234 CATGGTCGTGGAGGTGATGT 59.750 55.000 0.00 0.00 0.00 3.06
1118 1153 0.983905 GGAGGGAAAGGGAGAGGGTC 60.984 65.000 0.00 0.00 0.00 4.46
1119 1154 1.083141 GGAGGGAAAGGGAGAGGGT 59.917 63.158 0.00 0.00 0.00 4.34
1130 1165 1.219724 ACGCCTAGGAATAGGAGGGAA 59.780 52.381 14.75 0.00 40.70 3.97
1150 1185 3.691342 CGTTGACGAGGGAGGCCA 61.691 66.667 5.01 0.00 43.02 5.36
1170 1205 3.869272 CTTGACATCGCTGCCGCC 61.869 66.667 0.00 0.00 0.00 6.13
1171 1206 3.869272 CCTTGACATCGCTGCCGC 61.869 66.667 0.00 0.00 0.00 6.53
1176 1211 3.687321 ATGCCGCCTTGACATCGCT 62.687 57.895 0.00 0.00 0.00 4.93
1179 1214 2.409055 TGCATGCCGCCTTGACATC 61.409 57.895 16.68 0.00 41.33 3.06
1197 1232 2.913578 TGGGTACGGCGTGTCAGT 60.914 61.111 24.86 0.00 0.00 3.41
1199 1234 2.598099 TCTGGGTACGGCGTGTCA 60.598 61.111 24.86 16.12 0.00 3.58
1223 1258 4.803426 GCTGAGAGGACGGTGGCG 62.803 72.222 0.00 0.00 0.00 5.69
1225 1260 1.153489 CATGCTGAGAGGACGGTGG 60.153 63.158 0.00 0.00 0.00 4.61
1349 1384 2.517875 GCGCCATCCTTGATGCCT 60.518 61.111 0.00 0.00 38.59 4.75
1365 1400 3.737172 GTCCGTGCACCACCATGC 61.737 66.667 12.15 0.00 46.32 4.06
1366 1401 3.055719 GGTCCGTGCACCACCATG 61.056 66.667 22.36 4.24 36.32 3.66
1367 1402 3.565214 TGGTCCGTGCACCACCAT 61.565 61.111 24.95 0.00 41.84 3.55
1413 1448 1.966901 TTGTGGTGACTGAGGTGCGT 61.967 55.000 0.00 0.00 0.00 5.24
1417 1452 1.768275 TGATGTTGTGGTGACTGAGGT 59.232 47.619 0.00 0.00 0.00 3.85
1421 1456 0.877071 GCCTGATGTTGTGGTGACTG 59.123 55.000 0.00 0.00 0.00 3.51
1434 1469 4.498520 CACGTCGGCGAGCCTGAT 62.499 66.667 20.03 0.00 42.00 2.90
1452 1487 0.390340 GTCCTCGTGATGAAGCAGCA 60.390 55.000 0.00 0.00 0.00 4.41
1454 1489 0.803768 CGGTCCTCGTGATGAAGCAG 60.804 60.000 0.00 0.00 0.00 4.24
1455 1490 1.215382 CGGTCCTCGTGATGAAGCA 59.785 57.895 0.00 0.00 0.00 3.91
1463 1498 0.956410 AGTCACTCTCGGTCCTCGTG 60.956 60.000 0.00 0.00 40.32 4.35
1464 1499 0.674269 GAGTCACTCTCGGTCCTCGT 60.674 60.000 0.00 0.00 40.32 4.18
1478 1513 1.105167 AGTTCCACACGACCGAGTCA 61.105 55.000 0.00 0.00 32.09 3.41
1535 1570 0.523966 AGTCTTTCGAGAGCAGGTCG 59.476 55.000 0.00 0.00 38.84 4.79
1554 1589 2.419159 CCATGATCTTCTCCAAGTCGCA 60.419 50.000 0.00 0.00 0.00 5.10
1556 1591 2.831333 CCCATGATCTTCTCCAAGTCG 58.169 52.381 0.00 0.00 0.00 4.18
1560 1595 0.911769 ACGCCCATGATCTTCTCCAA 59.088 50.000 0.00 0.00 0.00 3.53
1608 1643 3.012518 GCACAGTAATGCTCTTGGTGAT 58.987 45.455 0.00 0.00 42.62 3.06
1621 1656 3.166490 TTCACGGGCGGCACAGTAA 62.166 57.895 12.47 0.00 0.00 2.24
1791 1826 8.965986 AGCTTGGACGAATAAAAATTTCTAAC 57.034 30.769 0.00 0.00 0.00 2.34
1861 1897 6.441093 AATGACTTTACGCATGACATCATT 57.559 33.333 0.00 0.00 33.61 2.57
1873 1909 1.246970 CGGCGCAAAATGACTTTACG 58.753 50.000 10.83 0.00 0.00 3.18
1942 1978 5.467738 TCTAGGTGGGTCATACATTCTCAT 58.532 41.667 0.00 0.00 0.00 2.90
2011 2048 2.683362 GGCCCATTAAGCTAACACTGAC 59.317 50.000 0.00 0.00 0.00 3.51
2019 2056 4.647399 GTGTATTTTGGGCCCATTAAGCTA 59.353 41.667 29.23 5.39 0.00 3.32
2050 2087 0.906066 TTGCATGCGTACCTTCCCTA 59.094 50.000 14.09 0.00 0.00 3.53
2054 2091 1.726853 AGACTTGCATGCGTACCTTC 58.273 50.000 14.09 3.47 0.00 3.46
2074 2111 5.306937 TGTTCTTCATGTAGAGTGAGGGAAA 59.693 40.000 2.09 0.00 0.00 3.13
2178 2216 0.955905 CCAAAACCAACTACGGGTGG 59.044 55.000 0.00 0.00 39.01 4.61
2184 2222 5.697633 TCGTCAATACTCCAAAACCAACTAC 59.302 40.000 0.00 0.00 0.00 2.73
2207 2245 1.940613 AGACGCTCAACCAAGTTTGTC 59.059 47.619 0.00 0.00 0.00 3.18
2223 2261 6.299604 GTGAATCTCACAAACACATTAGACG 58.700 40.000 1.92 0.00 46.22 4.18
2247 2285 3.753294 ACTTCTACCTGTGTTGTCCTG 57.247 47.619 0.00 0.00 0.00 3.86
2252 2290 3.489785 GTCGACAACTTCTACCTGTGTTG 59.510 47.826 11.55 0.00 43.55 3.33
2257 2295 4.623167 CAGAATGTCGACAACTTCTACCTG 59.377 45.833 26.06 15.40 0.00 4.00
2268 2306 0.459899 CCGATCCCAGAATGTCGACA 59.540 55.000 22.48 22.48 36.25 4.35
2269 2307 0.249489 CCCGATCCCAGAATGTCGAC 60.249 60.000 9.11 9.11 36.25 4.20
2270 2308 1.399744 CCCCGATCCCAGAATGTCGA 61.400 60.000 0.00 0.00 36.25 4.20
2271 2309 1.069765 CCCCGATCCCAGAATGTCG 59.930 63.158 0.00 0.00 0.00 4.35
2272 2310 1.451936 CCCCCGATCCCAGAATGTC 59.548 63.158 0.00 0.00 0.00 3.06
2273 2311 3.660724 CCCCCGATCCCAGAATGT 58.339 61.111 0.00 0.00 0.00 2.71
2291 2329 2.269241 GCAGGCAGGTCTGGGTAC 59.731 66.667 2.75 0.00 35.43 3.34
2292 2330 2.176202 TAGGCAGGCAGGTCTGGGTA 62.176 60.000 2.75 0.00 35.43 3.69
2293 2331 3.562681 TAGGCAGGCAGGTCTGGGT 62.563 63.158 2.75 0.00 35.43 4.51
2294 2332 2.688666 TAGGCAGGCAGGTCTGGG 60.689 66.667 2.75 0.00 35.43 4.45
2295 2333 2.586792 GTAGGCAGGCAGGTCTGG 59.413 66.667 2.75 0.00 35.43 3.86
2296 2334 2.185350 CGTAGGCAGGCAGGTCTG 59.815 66.667 0.00 0.00 37.79 3.51
2297 2335 3.077556 CCGTAGGCAGGCAGGTCT 61.078 66.667 0.00 0.00 46.14 3.85
2327 2365 4.818863 TACCGGGCCGTCGATGGA 62.819 66.667 28.06 1.79 0.00 3.41
2328 2366 4.580551 GTACCGGGCCGTCGATGG 62.581 72.222 26.32 19.87 0.00 3.51
2329 2367 4.918129 CGTACCGGGCCGTCGATG 62.918 72.222 26.32 11.62 0.00 3.84
2340 2378 2.558554 CTTGGAGCTGGACCGTACCG 62.559 65.000 0.00 0.00 0.00 4.02
2341 2379 1.218316 CTTGGAGCTGGACCGTACC 59.782 63.158 0.00 0.00 0.00 3.34
2342 2380 1.218316 CCTTGGAGCTGGACCGTAC 59.782 63.158 0.00 0.00 0.00 3.67
2343 2381 1.077805 TCCTTGGAGCTGGACCGTA 59.922 57.895 0.00 0.00 0.00 4.02
2344 2382 2.203788 TCCTTGGAGCTGGACCGT 60.204 61.111 0.00 0.00 0.00 4.83
2345 2383 2.266055 GTCCTTGGAGCTGGACCG 59.734 66.667 9.34 0.00 45.03 4.79
2348 2386 2.650116 GCGAGTCCTTGGAGCTGGA 61.650 63.158 0.00 0.00 0.00 3.86
2349 2387 2.125350 GCGAGTCCTTGGAGCTGG 60.125 66.667 0.00 0.00 0.00 4.85
2350 2388 1.004560 TTGCGAGTCCTTGGAGCTG 60.005 57.895 0.00 0.00 0.00 4.24
2351 2389 1.294780 CTTGCGAGTCCTTGGAGCT 59.705 57.895 0.00 0.00 0.00 4.09
2352 2390 2.394563 GCTTGCGAGTCCTTGGAGC 61.395 63.158 2.14 0.00 0.00 4.70
2353 2391 0.603707 TTGCTTGCGAGTCCTTGGAG 60.604 55.000 2.14 0.00 0.00 3.86
2354 2392 0.603707 CTTGCTTGCGAGTCCTTGGA 60.604 55.000 2.14 0.00 0.00 3.53
2355 2393 0.603707 TCTTGCTTGCGAGTCCTTGG 60.604 55.000 9.41 0.00 0.00 3.61
2356 2394 0.514691 GTCTTGCTTGCGAGTCCTTG 59.485 55.000 9.41 0.00 0.00 3.61
2357 2395 0.603975 GGTCTTGCTTGCGAGTCCTT 60.604 55.000 15.59 0.00 0.00 3.36
2358 2396 1.004440 GGTCTTGCTTGCGAGTCCT 60.004 57.895 15.59 0.00 0.00 3.85
2359 2397 2.035442 GGGTCTTGCTTGCGAGTCC 61.035 63.158 14.85 14.85 0.00 3.85
2360 2398 1.004440 AGGGTCTTGCTTGCGAGTC 60.004 57.895 9.41 4.45 0.00 3.36
2361 2399 1.004440 GAGGGTCTTGCTTGCGAGT 60.004 57.895 9.41 0.00 0.00 4.18
2362 2400 2.097038 CGAGGGTCTTGCTTGCGAG 61.097 63.158 3.55 3.55 0.00 5.03
2363 2401 2.048222 CGAGGGTCTTGCTTGCGA 60.048 61.111 0.00 0.00 0.00 5.10
2364 2402 3.793144 GCGAGGGTCTTGCTTGCG 61.793 66.667 0.20 0.00 37.84 4.85
2365 2403 3.793144 CGCGAGGGTCTTGCTTGC 61.793 66.667 0.00 0.00 38.64 4.01
2366 2404 2.048222 TCGCGAGGGTCTTGCTTG 60.048 61.111 3.71 0.00 38.64 4.01
2367 2405 2.262915 CTCGCGAGGGTCTTGCTT 59.737 61.111 28.40 0.00 38.64 3.91
2368 2406 3.764466 CCTCGCGAGGGTCTTGCT 61.764 66.667 41.47 0.00 44.87 3.91
2394 2432 2.430921 AGTCGTTTGCCTCGCGAG 60.431 61.111 29.06 29.06 35.22 5.03
2395 2433 2.430244 GAGTCGTTTGCCTCGCGA 60.430 61.111 9.26 9.26 0.00 5.87
2396 2434 3.479269 GGAGTCGTTTGCCTCGCG 61.479 66.667 0.00 0.00 0.00 5.87
2397 2435 1.901650 CTTGGAGTCGTTTGCCTCGC 61.902 60.000 0.00 0.00 0.00 5.03
2398 2436 0.319555 TCTTGGAGTCGTTTGCCTCG 60.320 55.000 0.00 0.00 0.00 4.63
2399 2437 1.149148 GTCTTGGAGTCGTTTGCCTC 58.851 55.000 0.00 0.00 0.00 4.70
2400 2438 0.250338 GGTCTTGGAGTCGTTTGCCT 60.250 55.000 0.00 0.00 0.00 4.75
2401 2439 0.250338 AGGTCTTGGAGTCGTTTGCC 60.250 55.000 0.00 0.00 0.00 4.52
2402 2440 2.067013 GTAGGTCTTGGAGTCGTTTGC 58.933 52.381 0.00 0.00 0.00 3.68
2403 2441 2.685100 GGTAGGTCTTGGAGTCGTTTG 58.315 52.381 0.00 0.00 0.00 2.93
2404 2442 1.271656 CGGTAGGTCTTGGAGTCGTTT 59.728 52.381 0.00 0.00 0.00 3.60
2405 2443 0.886563 CGGTAGGTCTTGGAGTCGTT 59.113 55.000 0.00 0.00 0.00 3.85
2406 2444 0.037303 TCGGTAGGTCTTGGAGTCGT 59.963 55.000 0.00 0.00 0.00 4.34
2407 2445 0.733729 CTCGGTAGGTCTTGGAGTCG 59.266 60.000 0.00 0.00 0.00 4.18
2408 2446 1.104630 CCTCGGTAGGTCTTGGAGTC 58.895 60.000 0.00 0.00 38.19 3.36
2409 2447 0.702902 TCCTCGGTAGGTCTTGGAGT 59.297 55.000 0.00 0.00 44.09 3.85
2410 2448 1.394618 CTCCTCGGTAGGTCTTGGAG 58.605 60.000 0.00 0.00 44.09 3.86
2411 2449 0.683504 GCTCCTCGGTAGGTCTTGGA 60.684 60.000 0.00 0.00 44.09 3.53
2412 2450 0.970937 TGCTCCTCGGTAGGTCTTGG 60.971 60.000 0.00 0.00 44.09 3.61
2413 2451 0.457851 CTGCTCCTCGGTAGGTCTTG 59.542 60.000 0.00 0.00 44.09 3.02
2414 2452 1.324005 GCTGCTCCTCGGTAGGTCTT 61.324 60.000 0.00 0.00 44.09 3.01
2415 2453 1.755008 GCTGCTCCTCGGTAGGTCT 60.755 63.158 0.00 0.00 44.09 3.85
2416 2454 1.324005 AAGCTGCTCCTCGGTAGGTC 61.324 60.000 1.00 0.00 44.09 3.85
2417 2455 1.305381 AAGCTGCTCCTCGGTAGGT 60.305 57.895 1.00 0.00 44.09 3.08
2418 2456 1.439644 GAAGCTGCTCCTCGGTAGG 59.560 63.158 1.00 0.00 45.21 3.18
2419 2457 1.439644 GGAAGCTGCTCCTCGGTAG 59.560 63.158 1.00 0.00 32.21 3.18
2420 2458 2.058595 GGGAAGCTGCTCCTCGGTA 61.059 63.158 1.00 0.00 35.63 4.02
2421 2459 3.394836 GGGAAGCTGCTCCTCGGT 61.395 66.667 1.00 0.00 35.63 4.69
2422 2460 4.521062 CGGGAAGCTGCTCCTCGG 62.521 72.222 0.00 0.00 35.63 4.63
2423 2461 3.423162 CTCGGGAAGCTGCTCCTCG 62.423 68.421 0.12 0.12 35.63 4.63
2424 2462 2.498726 CTCGGGAAGCTGCTCCTC 59.501 66.667 1.00 0.00 35.63 3.71
2433 2471 2.124942 GGAGGCAAGCTCGGGAAG 60.125 66.667 0.00 0.00 0.00 3.46
2434 2472 2.607750 AGGAGGCAAGCTCGGGAA 60.608 61.111 0.00 0.00 0.00 3.97
2435 2473 3.393970 CAGGAGGCAAGCTCGGGA 61.394 66.667 0.00 0.00 0.00 5.14
2436 2474 3.382803 CTCAGGAGGCAAGCTCGGG 62.383 68.421 0.00 0.00 0.00 5.14
2437 2475 2.186384 CTCAGGAGGCAAGCTCGG 59.814 66.667 0.00 0.00 0.00 4.63
2438 2476 2.186384 CCTCAGGAGGCAAGCTCG 59.814 66.667 1.73 0.00 42.44 5.03
2439 2477 2.250741 GTCCCTCAGGAGGCAAGCTC 62.251 65.000 9.92 0.00 45.21 4.09
2440 2478 2.297129 GTCCCTCAGGAGGCAAGCT 61.297 63.158 9.92 0.00 45.21 3.74
2441 2479 2.270527 GTCCCTCAGGAGGCAAGC 59.729 66.667 9.92 0.00 45.21 4.01
2442 2480 2.581354 CGTCCCTCAGGAGGCAAG 59.419 66.667 9.92 0.00 45.21 4.01
2443 2481 3.003173 CCGTCCCTCAGGAGGCAA 61.003 66.667 9.92 0.00 45.21 4.52
2444 2482 3.992641 TCCGTCCCTCAGGAGGCA 61.993 66.667 9.92 0.00 45.21 4.75
2448 2486 0.183971 GAGATCTCCGTCCCTCAGGA 59.816 60.000 12.00 0.00 41.08 3.86
2449 2487 0.184933 AGAGATCTCCGTCCCTCAGG 59.815 60.000 19.30 0.00 0.00 3.86
2450 2488 2.940994 TAGAGATCTCCGTCCCTCAG 57.059 55.000 19.30 0.00 0.00 3.35
2451 2489 2.815963 GCATAGAGATCTCCGTCCCTCA 60.816 54.545 19.30 0.00 0.00 3.86
2452 2490 1.816224 GCATAGAGATCTCCGTCCCTC 59.184 57.143 19.30 0.00 0.00 4.30
2453 2491 1.145945 TGCATAGAGATCTCCGTCCCT 59.854 52.381 19.30 2.07 0.00 4.20
2454 2492 1.543802 CTGCATAGAGATCTCCGTCCC 59.456 57.143 19.30 5.24 0.00 4.46
2455 2493 1.543802 CCTGCATAGAGATCTCCGTCC 59.456 57.143 19.30 6.61 0.00 4.79
2456 2494 1.067915 GCCTGCATAGAGATCTCCGTC 60.068 57.143 19.30 6.97 0.00 4.79
2457 2495 0.965439 GCCTGCATAGAGATCTCCGT 59.035 55.000 19.30 5.37 0.00 4.69
2458 2496 0.964700 TGCCTGCATAGAGATCTCCG 59.035 55.000 19.30 9.35 0.00 4.63
2459 2497 1.001860 GGTGCCTGCATAGAGATCTCC 59.998 57.143 19.30 4.47 0.00 3.71
2460 2498 1.001860 GGGTGCCTGCATAGAGATCTC 59.998 57.143 15.29 15.29 0.00 2.75
2461 2499 1.055040 GGGTGCCTGCATAGAGATCT 58.945 55.000 0.00 0.00 0.00 2.75
2462 2500 0.761187 TGGGTGCCTGCATAGAGATC 59.239 55.000 0.00 0.00 0.00 2.75
2463 2501 0.471617 GTGGGTGCCTGCATAGAGAT 59.528 55.000 0.00 0.00 0.00 2.75
2464 2502 1.626356 GGTGGGTGCCTGCATAGAGA 61.626 60.000 0.00 0.00 0.00 3.10
2465 2503 1.153086 GGTGGGTGCCTGCATAGAG 60.153 63.158 0.00 0.00 0.00 2.43
2466 2504 1.616327 AGGTGGGTGCCTGCATAGA 60.616 57.895 0.00 0.00 37.50 1.98
2467 2505 1.153086 GAGGTGGGTGCCTGCATAG 60.153 63.158 0.00 0.00 39.34 2.23
2468 2506 2.998097 GAGGTGGGTGCCTGCATA 59.002 61.111 0.00 0.00 39.34 3.14
2469 2507 4.415150 CGAGGTGGGTGCCTGCAT 62.415 66.667 0.00 0.00 39.34 3.96
2488 2526 3.993234 CATGTCATCGCGCGCCTC 61.993 66.667 27.95 15.37 0.00 4.70
2489 2527 4.512961 TCATGTCATCGCGCGCCT 62.513 61.111 27.95 12.45 0.00 5.52
2490 2528 3.993234 CTCATGTCATCGCGCGCC 61.993 66.667 27.95 11.85 0.00 6.53
2491 2529 4.640113 GCTCATGTCATCGCGCGC 62.640 66.667 27.95 23.91 0.00 6.86
2492 2530 4.331258 CGCTCATGTCATCGCGCG 62.331 66.667 26.76 26.76 39.11 6.86
2493 2531 2.305853 ATCGCTCATGTCATCGCGC 61.306 57.895 17.05 0.00 44.72 6.86
2494 2532 0.936297 TCATCGCTCATGTCATCGCG 60.936 55.000 16.15 16.15 46.28 5.87
2495 2533 0.506080 GTCATCGCTCATGTCATCGC 59.494 55.000 0.00 0.00 33.66 4.58
2496 2534 1.520174 GTGTCATCGCTCATGTCATCG 59.480 52.381 0.00 0.00 33.76 3.84
2497 2535 2.543641 TGTGTCATCGCTCATGTCATC 58.456 47.619 0.00 0.00 33.76 2.92
2498 2536 2.674852 GTTGTGTCATCGCTCATGTCAT 59.325 45.455 0.00 0.00 33.76 3.06
2499 2537 2.068519 GTTGTGTCATCGCTCATGTCA 58.931 47.619 0.00 0.00 33.66 3.58
2500 2538 1.059692 CGTTGTGTCATCGCTCATGTC 59.940 52.381 0.00 0.00 33.66 3.06
2501 2539 1.070821 CGTTGTGTCATCGCTCATGT 58.929 50.000 0.00 0.00 33.66 3.21
2502 2540 0.247419 GCGTTGTGTCATCGCTCATG 60.247 55.000 14.93 0.00 45.37 3.07
2503 2541 1.686566 CGCGTTGTGTCATCGCTCAT 61.687 55.000 18.25 0.00 46.23 2.90
2504 2542 2.371923 CGCGTTGTGTCATCGCTCA 61.372 57.895 18.25 0.00 46.23 4.26
2505 2543 1.614227 TTCGCGTTGTGTCATCGCTC 61.614 55.000 18.25 0.00 46.23 5.03
2506 2544 1.617755 CTTCGCGTTGTGTCATCGCT 61.618 55.000 18.25 0.00 46.23 4.93
2507 2545 1.225475 CTTCGCGTTGTGTCATCGC 60.225 57.895 5.77 12.99 45.36 4.58
2508 2546 1.282248 ACCTTCGCGTTGTGTCATCG 61.282 55.000 5.77 0.00 0.00 3.84
2509 2547 0.865769 AACCTTCGCGTTGTGTCATC 59.134 50.000 5.77 0.00 0.00 2.92
2510 2548 1.305201 AAACCTTCGCGTTGTGTCAT 58.695 45.000 5.77 0.00 0.00 3.06
2511 2549 1.062880 GAAAACCTTCGCGTTGTGTCA 59.937 47.619 5.77 0.00 0.00 3.58
2512 2550 1.329599 AGAAAACCTTCGCGTTGTGTC 59.670 47.619 5.77 3.99 36.61 3.67
2513 2551 1.375551 AGAAAACCTTCGCGTTGTGT 58.624 45.000 5.77 0.00 36.61 3.72
2514 2552 2.542595 ACTAGAAAACCTTCGCGTTGTG 59.457 45.455 5.77 0.00 36.61 3.33
2515 2553 2.830104 ACTAGAAAACCTTCGCGTTGT 58.170 42.857 5.77 0.00 36.61 3.32
2516 2554 3.872560 AACTAGAAAACCTTCGCGTTG 57.127 42.857 5.77 0.00 36.61 4.10
2517 2555 4.888038 AAAACTAGAAAACCTTCGCGTT 57.112 36.364 5.77 0.00 36.61 4.84
2518 2556 4.888038 AAAAACTAGAAAACCTTCGCGT 57.112 36.364 5.77 0.00 36.61 6.01
2555 2593 8.732531 CCACATTTTGAAATAGGCATGAAAAAT 58.267 29.630 0.00 0.00 0.00 1.82
2556 2594 7.718753 ACCACATTTTGAAATAGGCATGAAAAA 59.281 29.630 0.00 0.00 0.00 1.94
2557 2595 7.222872 ACCACATTTTGAAATAGGCATGAAAA 58.777 30.769 0.00 0.00 0.00 2.29
2558 2596 6.767456 ACCACATTTTGAAATAGGCATGAAA 58.233 32.000 0.00 0.00 0.00 2.69
2559 2597 6.014755 TGACCACATTTTGAAATAGGCATGAA 60.015 34.615 0.00 0.00 0.00 2.57
2560 2598 5.479724 TGACCACATTTTGAAATAGGCATGA 59.520 36.000 0.00 0.00 0.00 3.07
2561 2599 5.722263 TGACCACATTTTGAAATAGGCATG 58.278 37.500 0.00 0.00 0.00 4.06
2562 2600 5.999205 TGACCACATTTTGAAATAGGCAT 57.001 34.783 6.90 0.00 0.00 4.40
2563 2601 5.798125 TTGACCACATTTTGAAATAGGCA 57.202 34.783 6.90 4.72 0.00 4.75
2564 2602 7.671495 ATTTTGACCACATTTTGAAATAGGC 57.329 32.000 6.90 0.00 0.00 3.93
2568 2606 9.012161 CCCATTATTTTGACCACATTTTGAAAT 57.988 29.630 0.00 0.00 0.00 2.17
2569 2607 7.040823 GCCCATTATTTTGACCACATTTTGAAA 60.041 33.333 0.00 0.00 0.00 2.69
2570 2608 6.429385 GCCCATTATTTTGACCACATTTTGAA 59.571 34.615 0.00 0.00 0.00 2.69
2571 2609 5.936956 GCCCATTATTTTGACCACATTTTGA 59.063 36.000 0.00 0.00 0.00 2.69
2572 2610 5.704515 TGCCCATTATTTTGACCACATTTTG 59.295 36.000 0.00 0.00 0.00 2.44
2573 2611 5.874093 TGCCCATTATTTTGACCACATTTT 58.126 33.333 0.00 0.00 0.00 1.82
2574 2612 5.495926 TGCCCATTATTTTGACCACATTT 57.504 34.783 0.00 0.00 0.00 2.32
2575 2613 5.430007 CATGCCCATTATTTTGACCACATT 58.570 37.500 0.00 0.00 0.00 2.71
2576 2614 4.141665 CCATGCCCATTATTTTGACCACAT 60.142 41.667 0.00 0.00 0.00 3.21
2577 2615 3.197333 CCATGCCCATTATTTTGACCACA 59.803 43.478 0.00 0.00 0.00 4.17
2578 2616 3.795877 CCATGCCCATTATTTTGACCAC 58.204 45.455 0.00 0.00 0.00 4.16
2579 2617 2.170187 GCCATGCCCATTATTTTGACCA 59.830 45.455 0.00 0.00 0.00 4.02
2580 2618 2.485302 GGCCATGCCCATTATTTTGACC 60.485 50.000 0.00 0.00 44.06 4.02
2581 2619 2.837498 GGCCATGCCCATTATTTTGAC 58.163 47.619 0.00 0.00 44.06 3.18
2594 2632 1.072965 AGTAGCTAGGAATGGCCATGC 59.927 52.381 21.63 18.91 40.02 4.06
2595 2633 3.144506 CAAGTAGCTAGGAATGGCCATG 58.855 50.000 21.63 7.39 40.02 3.66
2596 2634 2.780010 ACAAGTAGCTAGGAATGGCCAT 59.220 45.455 14.09 14.09 40.02 4.40
2597 2635 2.196595 ACAAGTAGCTAGGAATGGCCA 58.803 47.619 8.56 8.56 40.02 5.36
2598 2636 2.945668 CAACAAGTAGCTAGGAATGGCC 59.054 50.000 0.00 0.00 0.00 5.36
2599 2637 3.873910 TCAACAAGTAGCTAGGAATGGC 58.126 45.455 0.00 0.00 0.00 4.40
2600 2638 6.115446 TGATTCAACAAGTAGCTAGGAATGG 58.885 40.000 0.00 0.00 0.00 3.16
2601 2639 7.255035 CCATGATTCAACAAGTAGCTAGGAATG 60.255 40.741 0.00 0.00 0.00 2.67
2602 2640 6.769822 CCATGATTCAACAAGTAGCTAGGAAT 59.230 38.462 0.00 0.00 0.00 3.01
2603 2641 6.070251 TCCATGATTCAACAAGTAGCTAGGAA 60.070 38.462 0.00 0.00 0.00 3.36
2604 2642 5.425217 TCCATGATTCAACAAGTAGCTAGGA 59.575 40.000 0.00 0.00 0.00 2.94
2605 2643 5.674525 TCCATGATTCAACAAGTAGCTAGG 58.325 41.667 0.00 0.00 0.00 3.02
2606 2644 7.615582 TTTCCATGATTCAACAAGTAGCTAG 57.384 36.000 0.00 0.00 0.00 3.42
2607 2645 7.994425 TTTTCCATGATTCAACAAGTAGCTA 57.006 32.000 0.00 0.00 0.00 3.32
2608 2646 6.899393 TTTTCCATGATTCAACAAGTAGCT 57.101 33.333 0.00 0.00 0.00 3.32
2634 2672 4.764823 ACTATTTCATTGGAGAAACGCCAA 59.235 37.500 9.10 9.10 46.28 4.52
2635 2673 4.331968 ACTATTTCATTGGAGAAACGCCA 58.668 39.130 0.00 0.00 40.03 5.69
2636 2674 4.965119 ACTATTTCATTGGAGAAACGCC 57.035 40.909 0.00 0.00 40.03 5.68
2637 2675 8.911247 AAATAACTATTTCATTGGAGAAACGC 57.089 30.769 0.00 0.00 40.03 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.