Multiple sequence alignment - TraesCS4D01G145500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G145500 chr4D 100.000 2709 0 0 1 2709 134551477 134548769 0.000000e+00 5003.0
1 TraesCS4D01G145500 chr4D 86.711 760 66 19 888 1641 134563088 134563818 0.000000e+00 811.0
2 TraesCS4D01G145500 chr4D 78.661 239 26 14 2117 2353 353417908 353417693 4.700000e-28 135.0
3 TraesCS4D01G145500 chr3D 88.323 1139 78 26 782 1903 68336117 68335017 0.000000e+00 1315.0
4 TraesCS4D01G145500 chr3D 89.405 991 67 25 717 1700 68430182 68431141 0.000000e+00 1214.0
5 TraesCS4D01G145500 chr3D 84.952 1050 94 32 881 1912 68325792 68324789 0.000000e+00 1005.0
6 TraesCS4D01G145500 chr3D 88.841 699 59 10 918 1600 68170070 68170765 0.000000e+00 841.0
7 TraesCS4D01G145500 chr3D 88.513 679 58 11 933 1600 68273624 68274293 0.000000e+00 804.0
8 TraesCS4D01G145500 chr3D 86.154 780 52 24 880 1657 68842745 68843470 0.000000e+00 791.0
9 TraesCS4D01G145500 chr3D 93.562 233 9 2 1688 1914 68431188 68431420 2.580000e-90 342.0
10 TraesCS4D01G145500 chr3D 89.320 206 14 4 339 539 68392522 68392724 4.480000e-63 252.0
11 TraesCS4D01G145500 chr3D 88.780 205 17 5 339 540 68836629 68836830 2.080000e-61 246.0
12 TraesCS4D01G145500 chr3B 86.080 1171 108 27 760 1912 112497481 112496348 0.000000e+00 1208.0
13 TraesCS4D01G145500 chr3B 88.525 915 73 21 742 1649 112465986 112465097 0.000000e+00 1079.0
14 TraesCS4D01G145500 chr3B 88.784 847 67 16 753 1589 113483163 113483991 0.000000e+00 1013.0
15 TraesCS4D01G145500 chr3B 90.206 776 55 9 877 1648 112836251 112835493 0.000000e+00 992.0
16 TraesCS4D01G145500 chr3B 87.245 784 59 20 881 1659 113503524 113504271 0.000000e+00 856.0
17 TraesCS4D01G145500 chr3B 89.086 678 57 8 938 1600 113512742 113512067 0.000000e+00 826.0
18 TraesCS4D01G145500 chr3B 83.091 893 111 11 717 1603 113304522 113303664 0.000000e+00 776.0
19 TraesCS4D01G145500 chr3B 92.395 263 13 3 1658 1914 112947792 112947531 4.260000e-98 368.0
20 TraesCS4D01G145500 chr3B 93.133 233 9 3 1688 1914 112835390 112835159 4.320000e-88 335.0
21 TraesCS4D01G145500 chr3B 91.705 217 11 3 1688 1898 113298616 113298401 7.340000e-76 294.0
22 TraesCS4D01G145500 chr3B 85.784 204 21 7 339 540 113197943 113197746 2.730000e-50 209.0
23 TraesCS4D01G145500 chr3B 84.878 205 21 9 339 540 112788122 112787925 5.920000e-47 198.0
24 TraesCS4D01G145500 chr3B 86.047 172 9 8 1688 1844 113487435 113487606 1.290000e-38 171.0
25 TraesCS4D01G145500 chr3B 76.019 417 51 22 2314 2709 670202966 670202578 1.290000e-38 171.0
26 TraesCS4D01G145500 chr3B 87.179 78 5 4 1583 1659 113487282 113487355 1.730000e-12 84.2
27 TraesCS4D01G145500 chr3A 90.090 888 58 14 782 1659 80412789 80413656 0.000000e+00 1125.0
28 TraesCS4D01G145500 chr3A 90.987 233 14 3 1689 1914 80410195 80409963 9.420000e-80 307.0
29 TraesCS4D01G145500 chr3A 97.959 49 1 0 1695 1743 80413761 80413809 4.810000e-13 86.1
30 TraesCS4D01G145500 chr4B 92.356 798 27 13 1920 2709 193526228 193525457 0.000000e+00 1105.0
31 TraesCS4D01G145500 chr4B 84.244 311 43 6 24 329 416497813 416498122 5.670000e-77 298.0
32 TraesCS4D01G145500 chr4B 84.300 293 34 7 2117 2408 289623204 289622923 2.660000e-70 276.0
33 TraesCS4D01G145500 chr4A 91.919 792 33 8 1920 2709 424370981 424371743 0.000000e+00 1079.0
34 TraesCS4D01G145500 chr4A 84.810 316 35 10 25 329 43100132 43100445 3.390000e-79 305.0
35 TraesCS4D01G145500 chr4A 83.489 321 45 7 14 329 77179761 77180078 2.640000e-75 292.0
36 TraesCS4D01G145500 chr2D 84.985 333 43 6 13 341 452855043 452854714 5.590000e-87 331.0
37 TraesCS4D01G145500 chr2D 84.457 341 40 8 1 329 194164582 194164921 9.360000e-85 324.0
38 TraesCS4D01G145500 chr6D 84.593 344 40 7 1 332 56112060 56111718 2.010000e-86 329.0
39 TraesCS4D01G145500 chr1D 85.209 311 38 8 24 329 251939800 251940107 2.030000e-81 313.0
40 TraesCS4D01G145500 chr1D 84.000 325 45 7 24 343 403198565 403198887 3.390000e-79 305.0
41 TraesCS4D01G145500 chr1D 82.386 352 48 9 1 339 160258254 160258604 7.340000e-76 294.0
42 TraesCS4D01G145500 chr7D 85.246 122 15 1 2226 2344 46354190 46354311 3.660000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G145500 chr4D 134548769 134551477 2708 True 5003.000000 5003 100.000000 1 2709 1 chr4D.!!$R1 2708
1 TraesCS4D01G145500 chr4D 134563088 134563818 730 False 811.000000 811 86.711000 888 1641 1 chr4D.!!$F1 753
2 TraesCS4D01G145500 chr3D 68335017 68336117 1100 True 1315.000000 1315 88.323000 782 1903 1 chr3D.!!$R2 1121
3 TraesCS4D01G145500 chr3D 68324789 68325792 1003 True 1005.000000 1005 84.952000 881 1912 1 chr3D.!!$R1 1031
4 TraesCS4D01G145500 chr3D 68170070 68170765 695 False 841.000000 841 88.841000 918 1600 1 chr3D.!!$F1 682
5 TraesCS4D01G145500 chr3D 68273624 68274293 669 False 804.000000 804 88.513000 933 1600 1 chr3D.!!$F2 667
6 TraesCS4D01G145500 chr3D 68842745 68843470 725 False 791.000000 791 86.154000 880 1657 1 chr3D.!!$F5 777
7 TraesCS4D01G145500 chr3D 68430182 68431420 1238 False 778.000000 1214 91.483500 717 1914 2 chr3D.!!$F6 1197
8 TraesCS4D01G145500 chr3B 112496348 112497481 1133 True 1208.000000 1208 86.080000 760 1912 1 chr3B.!!$R2 1152
9 TraesCS4D01G145500 chr3B 112465097 112465986 889 True 1079.000000 1079 88.525000 742 1649 1 chr3B.!!$R1 907
10 TraesCS4D01G145500 chr3B 113503524 113504271 747 False 856.000000 856 87.245000 881 1659 1 chr3B.!!$F1 778
11 TraesCS4D01G145500 chr3B 113512067 113512742 675 True 826.000000 826 89.086000 938 1600 1 chr3B.!!$R8 662
12 TraesCS4D01G145500 chr3B 113303664 113304522 858 True 776.000000 776 83.091000 717 1603 1 chr3B.!!$R7 886
13 TraesCS4D01G145500 chr3B 112835159 112836251 1092 True 663.500000 992 91.669500 877 1914 2 chr3B.!!$R10 1037
14 TraesCS4D01G145500 chr3B 113483163 113487606 4443 False 422.733333 1013 87.336667 753 1844 3 chr3B.!!$F2 1091
15 TraesCS4D01G145500 chr3A 80412789 80413809 1020 False 605.550000 1125 94.024500 782 1743 2 chr3A.!!$F1 961
16 TraesCS4D01G145500 chr4B 193525457 193526228 771 True 1105.000000 1105 92.356000 1920 2709 1 chr4B.!!$R1 789
17 TraesCS4D01G145500 chr4A 424370981 424371743 762 False 1079.000000 1079 91.919000 1920 2709 1 chr4A.!!$F3 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 659 0.035725 TCTCAGTCTAAGTCGCCCGA 60.036 55.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 5555 0.179119 GCCTCGGCTTTTACTCGCTA 60.179 55.0 0.0 0.0 38.26 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.793060 AGTGCCTAGGTGACGCTT 58.207 55.556 11.31 0.00 0.00 4.68
18 19 2.971676 AGTGCCTAGGTGACGCTTA 58.028 52.632 11.31 0.00 0.00 3.09
19 20 0.818296 AGTGCCTAGGTGACGCTTAG 59.182 55.000 11.31 0.00 0.00 2.18
20 21 0.815734 GTGCCTAGGTGACGCTTAGA 59.184 55.000 11.31 0.00 0.00 2.10
21 22 0.815734 TGCCTAGGTGACGCTTAGAC 59.184 55.000 11.31 0.00 0.00 2.59
22 23 0.815734 GCCTAGGTGACGCTTAGACA 59.184 55.000 11.31 0.00 0.00 3.41
23 24 1.469423 GCCTAGGTGACGCTTAGACAC 60.469 57.143 11.31 0.00 43.14 3.67
24 25 1.202154 CCTAGGTGACGCTTAGACACG 60.202 57.143 6.73 0.00 44.43 4.49
25 26 0.169672 TAGGTGACGCTTAGACACGC 59.830 55.000 0.00 0.00 44.43 5.34
26 27 1.372499 GGTGACGCTTAGACACGCA 60.372 57.895 0.00 0.00 44.43 5.24
27 28 0.736325 GGTGACGCTTAGACACGCAT 60.736 55.000 0.00 0.00 44.43 4.73
28 29 1.468565 GGTGACGCTTAGACACGCATA 60.469 52.381 0.00 0.00 44.43 3.14
29 30 1.846782 GTGACGCTTAGACACGCATAG 59.153 52.381 0.00 0.00 35.99 2.23
30 31 1.202256 TGACGCTTAGACACGCATAGG 60.202 52.381 0.00 0.00 0.00 2.57
31 32 0.815734 ACGCTTAGACACGCATAGGT 59.184 50.000 0.00 0.00 0.00 3.08
32 33 1.200483 CGCTTAGACACGCATAGGTG 58.800 55.000 0.00 0.00 43.54 4.00
33 34 1.202256 CGCTTAGACACGCATAGGTGA 60.202 52.381 0.00 0.00 40.38 4.02
34 35 2.543861 CGCTTAGACACGCATAGGTGAT 60.544 50.000 0.00 0.00 40.38 3.06
35 36 2.797156 GCTTAGACACGCATAGGTGATG 59.203 50.000 0.00 0.00 40.38 3.07
36 37 3.384668 CTTAGACACGCATAGGTGATGG 58.615 50.000 0.00 0.00 40.38 3.51
37 38 0.179073 AGACACGCATAGGTGATGGC 60.179 55.000 0.00 0.00 40.38 4.40
38 39 1.153168 ACACGCATAGGTGATGGCC 60.153 57.895 0.00 0.00 40.38 5.36
39 40 1.153188 CACGCATAGGTGATGGCCA 60.153 57.895 8.56 8.56 40.38 5.36
40 41 0.747644 CACGCATAGGTGATGGCCAA 60.748 55.000 10.96 0.00 40.38 4.52
41 42 0.748005 ACGCATAGGTGATGGCCAAC 60.748 55.000 10.96 8.17 35.91 3.77
42 43 1.775039 CGCATAGGTGATGGCCAACG 61.775 60.000 10.96 0.00 37.61 4.10
43 44 2.024918 CATAGGTGATGGCCAACGC 58.975 57.895 17.67 17.67 37.61 4.84
65 66 4.913335 CTCGCCTAGGACATAAGTGTAA 57.087 45.455 14.75 0.00 39.09 2.41
66 67 4.861210 CTCGCCTAGGACATAAGTGTAAG 58.139 47.826 14.75 0.00 39.09 2.34
67 68 4.275810 TCGCCTAGGACATAAGTGTAAGT 58.724 43.478 14.75 0.00 39.09 2.24
68 69 4.097437 TCGCCTAGGACATAAGTGTAAGTG 59.903 45.833 14.75 0.00 39.09 3.16
69 70 4.142227 CGCCTAGGACATAAGTGTAAGTGT 60.142 45.833 14.75 0.00 39.09 3.55
70 71 5.066893 CGCCTAGGACATAAGTGTAAGTGTA 59.933 44.000 14.75 0.00 39.09 2.90
71 72 6.505272 GCCTAGGACATAAGTGTAAGTGTAG 58.495 44.000 14.75 0.00 39.09 2.74
72 73 6.461231 GCCTAGGACATAAGTGTAAGTGTAGG 60.461 46.154 14.75 0.00 39.09 3.18
73 74 5.340439 AGGACATAAGTGTAAGTGTAGGC 57.660 43.478 0.00 0.00 39.09 3.93
74 75 4.775780 AGGACATAAGTGTAAGTGTAGGCA 59.224 41.667 0.00 0.00 39.09 4.75
75 76 5.105310 AGGACATAAGTGTAAGTGTAGGCAG 60.105 44.000 0.00 0.00 39.09 4.85
76 77 5.086104 ACATAAGTGTAAGTGTAGGCAGG 57.914 43.478 0.00 0.00 36.63 4.85
77 78 2.474410 AAGTGTAAGTGTAGGCAGGC 57.526 50.000 0.00 0.00 0.00 4.85
78 79 1.348064 AGTGTAAGTGTAGGCAGGCA 58.652 50.000 0.00 0.00 0.00 4.75
79 80 1.697432 AGTGTAAGTGTAGGCAGGCAA 59.303 47.619 0.00 0.00 0.00 4.52
80 81 2.076863 GTGTAAGTGTAGGCAGGCAAG 58.923 52.381 0.00 0.00 0.00 4.01
81 82 1.087501 GTAAGTGTAGGCAGGCAAGC 58.912 55.000 0.00 0.00 0.00 4.01
82 83 0.690192 TAAGTGTAGGCAGGCAAGCA 59.310 50.000 0.00 0.00 35.83 3.91
83 84 0.178992 AAGTGTAGGCAGGCAAGCAA 60.179 50.000 0.00 0.00 35.83 3.91
84 85 0.607489 AGTGTAGGCAGGCAAGCAAG 60.607 55.000 0.00 0.00 35.83 4.01
85 86 0.606401 GTGTAGGCAGGCAAGCAAGA 60.606 55.000 0.00 0.00 35.83 3.02
86 87 0.110295 TGTAGGCAGGCAAGCAAGAA 59.890 50.000 0.00 0.00 35.83 2.52
87 88 1.272092 TGTAGGCAGGCAAGCAAGAAT 60.272 47.619 0.00 0.00 35.83 2.40
88 89 1.821136 GTAGGCAGGCAAGCAAGAATT 59.179 47.619 0.00 0.00 35.83 2.17
100 101 2.947448 CAAGAATTGCCTACCCAAGC 57.053 50.000 0.00 0.00 40.39 4.01
101 102 1.133025 CAAGAATTGCCTACCCAAGCG 59.867 52.381 0.00 0.00 40.39 4.68
102 103 0.618458 AGAATTGCCTACCCAAGCGA 59.382 50.000 0.00 0.00 0.00 4.93
103 104 1.017387 GAATTGCCTACCCAAGCGAG 58.983 55.000 0.00 0.00 0.00 5.03
104 105 1.032114 AATTGCCTACCCAAGCGAGC 61.032 55.000 0.00 0.00 0.00 5.03
105 106 2.196997 ATTGCCTACCCAAGCGAGCA 62.197 55.000 0.00 0.00 0.00 4.26
106 107 2.046314 GCCTACCCAAGCGAGCAA 60.046 61.111 0.00 0.00 0.00 3.91
107 108 1.452108 GCCTACCCAAGCGAGCAAT 60.452 57.895 0.00 0.00 0.00 3.56
108 109 1.440145 GCCTACCCAAGCGAGCAATC 61.440 60.000 0.00 0.00 0.00 2.67
109 110 0.107703 CCTACCCAAGCGAGCAATCA 60.108 55.000 0.00 0.00 0.00 2.57
110 111 1.475751 CCTACCCAAGCGAGCAATCAT 60.476 52.381 0.00 0.00 0.00 2.45
111 112 1.600957 CTACCCAAGCGAGCAATCATG 59.399 52.381 0.00 0.00 0.00 3.07
132 133 5.848833 TGCCATATTGCATTGTATGTCAA 57.151 34.783 0.00 0.00 40.53 3.18
133 134 6.218108 TGCCATATTGCATTGTATGTCAAA 57.782 33.333 0.00 0.00 39.62 2.69
134 135 6.818233 TGCCATATTGCATTGTATGTCAAAT 58.182 32.000 0.00 0.00 39.62 2.32
135 136 6.702282 TGCCATATTGCATTGTATGTCAAATG 59.298 34.615 0.00 0.00 39.62 2.32
136 137 6.146510 GCCATATTGCATTGTATGTCAAATGG 59.853 38.462 17.99 17.99 39.62 3.16
137 138 6.647481 CCATATTGCATTGTATGTCAAATGGG 59.353 38.462 11.17 9.83 39.62 4.00
138 139 3.523606 TGCATTGTATGTCAAATGGGC 57.476 42.857 0.00 0.00 39.62 5.36
139 140 2.168106 TGCATTGTATGTCAAATGGGCC 59.832 45.455 0.00 0.00 39.62 5.80
140 141 2.168106 GCATTGTATGTCAAATGGGCCA 59.832 45.455 9.61 9.61 39.62 5.36
141 142 3.181463 GCATTGTATGTCAAATGGGCCAT 60.181 43.478 14.78 14.78 39.62 4.40
142 143 4.039004 GCATTGTATGTCAAATGGGCCATA 59.961 41.667 21.54 3.46 39.62 2.74
143 144 5.279607 GCATTGTATGTCAAATGGGCCATAT 60.280 40.000 21.54 11.72 39.62 1.78
144 145 6.742082 GCATTGTATGTCAAATGGGCCATATT 60.742 38.462 21.54 13.24 39.62 1.28
145 146 6.403866 TTGTATGTCAAATGGGCCATATTC 57.596 37.500 21.54 11.21 32.64 1.75
146 147 4.832266 TGTATGTCAAATGGGCCATATTCC 59.168 41.667 21.54 9.21 0.00 3.01
147 148 3.686227 TGTCAAATGGGCCATATTCCT 57.314 42.857 21.54 0.00 0.00 3.36
148 149 4.805140 TGTCAAATGGGCCATATTCCTA 57.195 40.909 21.54 2.23 0.00 2.94
149 150 5.337956 TGTCAAATGGGCCATATTCCTAT 57.662 39.130 21.54 0.00 0.00 2.57
150 151 5.078949 TGTCAAATGGGCCATATTCCTATG 58.921 41.667 21.54 10.24 35.47 2.23
160 161 3.879295 CCATATTCCTATGGCAATAGCGG 59.121 47.826 2.16 0.00 46.03 5.52
161 162 2.496899 ATTCCTATGGCAATAGCGGG 57.503 50.000 2.16 0.00 43.41 6.13
162 163 1.136828 TTCCTATGGCAATAGCGGGT 58.863 50.000 2.16 0.00 43.41 5.28
163 164 2.018355 TCCTATGGCAATAGCGGGTA 57.982 50.000 2.16 0.00 43.41 3.69
164 165 1.899814 TCCTATGGCAATAGCGGGTAG 59.100 52.381 2.16 0.00 43.41 3.18
165 166 1.623811 CCTATGGCAATAGCGGGTAGT 59.376 52.381 2.16 0.00 43.41 2.73
166 167 2.038557 CCTATGGCAATAGCGGGTAGTT 59.961 50.000 2.16 0.00 43.41 2.24
167 168 3.259876 CCTATGGCAATAGCGGGTAGTTA 59.740 47.826 2.16 0.00 43.41 2.24
168 169 3.849563 ATGGCAATAGCGGGTAGTTAA 57.150 42.857 0.00 0.00 43.41 2.01
169 170 2.908916 TGGCAATAGCGGGTAGTTAAC 58.091 47.619 0.00 0.00 43.41 2.01
170 171 2.502538 TGGCAATAGCGGGTAGTTAACT 59.497 45.455 13.68 13.68 43.41 2.24
171 172 3.054948 TGGCAATAGCGGGTAGTTAACTT 60.055 43.478 14.49 0.00 43.41 2.66
172 173 4.161942 TGGCAATAGCGGGTAGTTAACTTA 59.838 41.667 14.49 0.00 43.41 2.24
173 174 5.163280 TGGCAATAGCGGGTAGTTAACTTAT 60.163 40.000 14.49 1.43 43.41 1.73
174 175 5.761726 GGCAATAGCGGGTAGTTAACTTATT 59.238 40.000 14.49 7.69 43.41 1.40
175 176 6.261603 GGCAATAGCGGGTAGTTAACTTATTT 59.738 38.462 14.49 0.00 43.41 1.40
176 177 7.442062 GGCAATAGCGGGTAGTTAACTTATTTA 59.558 37.037 14.49 0.68 43.41 1.40
177 178 8.996271 GCAATAGCGGGTAGTTAACTTATTTAT 58.004 33.333 14.49 2.92 0.00 1.40
181 182 8.543862 AGCGGGTAGTTAACTTATTTATATGC 57.456 34.615 14.49 6.29 0.00 3.14
182 183 7.605309 AGCGGGTAGTTAACTTATTTATATGCC 59.395 37.037 14.49 0.00 0.00 4.40
183 184 7.148356 GCGGGTAGTTAACTTATTTATATGCCC 60.148 40.741 14.49 7.54 31.82 5.36
184 185 8.098912 CGGGTAGTTAACTTATTTATATGCCCT 58.901 37.037 14.49 0.00 32.45 5.19
205 206 9.253832 TGCCCTAAATTAATATTGATACCCATG 57.746 33.333 0.00 0.00 0.00 3.66
206 207 9.255029 GCCCTAAATTAATATTGATACCCATGT 57.745 33.333 0.00 0.00 0.00 3.21
224 225 8.147244 ACCCATGTAATAACCATAGATAGACC 57.853 38.462 0.00 0.00 0.00 3.85
225 226 7.962003 ACCCATGTAATAACCATAGATAGACCT 59.038 37.037 0.00 0.00 0.00 3.85
226 227 8.260818 CCCATGTAATAACCATAGATAGACCTG 58.739 40.741 0.00 0.00 0.00 4.00
227 228 9.035890 CCATGTAATAACCATAGATAGACCTGA 57.964 37.037 0.00 0.00 0.00 3.86
237 238 9.523168 ACCATAGATAGACCTGATAGTAGAAAC 57.477 37.037 0.00 0.00 0.00 2.78
238 239 9.747898 CCATAGATAGACCTGATAGTAGAAACT 57.252 37.037 0.00 0.00 39.91 2.66
246 247 9.134055 AGACCTGATAGTAGAAACTGTATTACC 57.866 37.037 0.00 0.00 36.36 2.85
247 248 7.938715 ACCTGATAGTAGAAACTGTATTACCG 58.061 38.462 0.00 0.00 36.36 4.02
248 249 6.862090 CCTGATAGTAGAAACTGTATTACCGC 59.138 42.308 0.00 0.00 36.36 5.68
249 250 6.742109 TGATAGTAGAAACTGTATTACCGCC 58.258 40.000 0.00 0.00 36.36 6.13
250 251 6.548622 TGATAGTAGAAACTGTATTACCGCCT 59.451 38.462 0.00 0.00 36.36 5.52
251 252 7.720957 TGATAGTAGAAACTGTATTACCGCCTA 59.279 37.037 0.00 0.00 36.36 3.93
252 253 6.388435 AGTAGAAACTGTATTACCGCCTAG 57.612 41.667 0.00 0.00 33.57 3.02
253 254 6.125029 AGTAGAAACTGTATTACCGCCTAGA 58.875 40.000 0.00 0.00 33.57 2.43
254 255 5.259832 AGAAACTGTATTACCGCCTAGAC 57.740 43.478 0.00 0.00 0.00 2.59
255 256 4.099113 AGAAACTGTATTACCGCCTAGACC 59.901 45.833 0.00 0.00 0.00 3.85
256 257 1.952296 ACTGTATTACCGCCTAGACCG 59.048 52.381 0.00 0.00 0.00 4.79
257 258 1.952296 CTGTATTACCGCCTAGACCGT 59.048 52.381 0.00 0.00 0.00 4.83
258 259 1.677576 TGTATTACCGCCTAGACCGTG 59.322 52.381 0.00 0.00 0.00 4.94
259 260 0.670162 TATTACCGCCTAGACCGTGC 59.330 55.000 0.00 0.00 0.00 5.34
260 261 2.024590 ATTACCGCCTAGACCGTGCC 62.025 60.000 0.00 0.00 0.00 5.01
261 262 3.650298 TACCGCCTAGACCGTGCCT 62.650 63.158 0.00 0.00 0.00 4.75
262 263 2.269520 TACCGCCTAGACCGTGCCTA 62.270 60.000 0.00 0.00 0.00 3.93
263 264 2.722487 CGCCTAGACCGTGCCTAG 59.278 66.667 0.00 0.00 34.77 3.02
265 266 3.857764 CCTAGACCGTGCCTAGGG 58.142 66.667 11.72 0.00 45.98 3.53
275 276 2.189521 GCCTAGGGCGCTTAAGCA 59.810 61.111 26.29 6.27 39.62 3.91
276 277 2.180862 GCCTAGGGCGCTTAAGCAC 61.181 63.158 26.29 17.28 39.62 4.40
280 281 3.815396 GGGCGCTTAAGCACTGCC 61.815 66.667 27.39 27.39 42.06 4.85
281 282 2.747855 GGCGCTTAAGCACTGCCT 60.748 61.111 27.78 0.00 40.43 4.75
282 283 1.449601 GGCGCTTAAGCACTGCCTA 60.450 57.895 27.78 0.00 40.43 3.93
283 284 1.432270 GGCGCTTAAGCACTGCCTAG 61.432 60.000 27.78 12.38 40.43 3.02
284 285 1.432270 GCGCTTAAGCACTGCCTAGG 61.432 60.000 26.29 3.67 42.21 3.02
285 286 1.432270 CGCTTAAGCACTGCCTAGGC 61.432 60.000 27.71 27.71 42.21 3.93
286 287 0.392998 GCTTAAGCACTGCCTAGGCA 60.393 55.000 33.82 33.82 44.45 4.75
287 288 2.609723 GCTTAAGCACTGCCTAGGCAC 61.610 57.143 32.88 22.47 42.96 5.01
288 289 4.892684 GCTTAAGCACTGCCTAGGCACT 62.893 54.545 32.88 24.39 42.96 4.40
289 290 5.553052 GCTTAAGCACTGCCTAGGCACTA 62.553 52.174 32.88 12.51 42.96 2.74
315 316 1.062525 GCCAATCGCCTTGCTTACG 59.937 57.895 0.00 0.00 33.20 3.18
316 317 1.062525 CCAATCGCCTTGCTTACGC 59.937 57.895 0.00 0.00 33.20 4.42
317 318 1.062525 CAATCGCCTTGCTTACGCC 59.937 57.895 0.00 0.00 34.43 5.68
318 319 1.078426 AATCGCCTTGCTTACGCCT 60.078 52.632 0.00 0.00 34.43 5.52
319 320 0.177141 AATCGCCTTGCTTACGCCTA 59.823 50.000 0.00 0.00 34.43 3.93
320 321 0.529992 ATCGCCTTGCTTACGCCTAC 60.530 55.000 0.00 0.00 34.43 3.18
321 322 2.171725 CGCCTTGCTTACGCCTACC 61.172 63.158 0.00 0.00 34.43 3.18
322 323 2.171725 GCCTTGCTTACGCCTACCG 61.172 63.158 0.00 0.00 44.21 4.02
323 324 2.171725 CCTTGCTTACGCCTACCGC 61.172 63.158 0.00 0.00 41.76 5.68
324 325 1.153628 CTTGCTTACGCCTACCGCT 60.154 57.895 0.00 0.00 41.76 5.52
325 326 0.739813 CTTGCTTACGCCTACCGCTT 60.740 55.000 0.00 0.00 41.76 4.68
326 327 0.320946 TTGCTTACGCCTACCGCTTT 60.321 50.000 0.00 0.00 41.76 3.51
327 328 0.320946 TGCTTACGCCTACCGCTTTT 60.321 50.000 0.00 0.00 41.76 2.27
328 329 0.800631 GCTTACGCCTACCGCTTTTT 59.199 50.000 0.00 0.00 41.76 1.94
352 353 8.918202 TTTCATCTTTGGTTGTATGACTAAGT 57.082 30.769 0.00 0.00 0.00 2.24
353 354 8.918202 TTCATCTTTGGTTGTATGACTAAGTT 57.082 30.769 0.00 0.00 0.00 2.66
354 355 8.918202 TCATCTTTGGTTGTATGACTAAGTTT 57.082 30.769 0.00 0.00 0.00 2.66
355 356 9.349713 TCATCTTTGGTTGTATGACTAAGTTTT 57.650 29.630 0.00 0.00 0.00 2.43
356 357 9.965824 CATCTTTGGTTGTATGACTAAGTTTTT 57.034 29.630 0.00 0.00 0.00 1.94
381 382 3.738982 GGCAATTTTAAGGCCTTTGTGT 58.261 40.909 26.08 0.00 44.32 3.72
382 383 4.888917 GGCAATTTTAAGGCCTTTGTGTA 58.111 39.130 26.08 0.97 44.32 2.90
383 384 5.487433 GGCAATTTTAAGGCCTTTGTGTAT 58.513 37.500 26.08 7.81 44.32 2.29
384 385 5.937540 GGCAATTTTAAGGCCTTTGTGTATT 59.062 36.000 26.08 13.22 44.32 1.89
385 386 6.092122 GGCAATTTTAAGGCCTTTGTGTATTC 59.908 38.462 26.08 7.25 44.32 1.75
386 387 6.873605 GCAATTTTAAGGCCTTTGTGTATTCT 59.126 34.615 26.08 0.00 0.00 2.40
387 388 8.032451 GCAATTTTAAGGCCTTTGTGTATTCTA 58.968 33.333 26.08 0.00 0.00 2.10
390 391 9.700831 ATTTTAAGGCCTTTGTGTATTCTATCT 57.299 29.630 26.08 0.00 0.00 1.98
391 392 9.528489 TTTTAAGGCCTTTGTGTATTCTATCTT 57.472 29.630 26.08 0.00 0.00 2.40
392 393 8.506168 TTAAGGCCTTTGTGTATTCTATCTTG 57.494 34.615 26.08 0.00 0.00 3.02
393 394 6.313519 AGGCCTTTGTGTATTCTATCTTGA 57.686 37.500 0.00 0.00 0.00 3.02
394 395 6.721318 AGGCCTTTGTGTATTCTATCTTGAA 58.279 36.000 0.00 0.00 0.00 2.69
395 396 6.825721 AGGCCTTTGTGTATTCTATCTTGAAG 59.174 38.462 0.00 0.00 0.00 3.02
396 397 6.823689 GGCCTTTGTGTATTCTATCTTGAAGA 59.176 38.462 0.00 0.00 0.00 2.87
397 398 7.201652 GGCCTTTGTGTATTCTATCTTGAAGAC 60.202 40.741 0.00 0.00 38.29 3.01
398 399 7.201652 GCCTTTGTGTATTCTATCTTGAAGACC 60.202 40.741 0.00 0.00 37.36 3.85
399 400 8.043710 CCTTTGTGTATTCTATCTTGAAGACCT 58.956 37.037 0.00 0.00 37.36 3.85
400 401 9.442047 CTTTGTGTATTCTATCTTGAAGACCTT 57.558 33.333 0.00 0.00 37.36 3.50
401 402 9.793259 TTTGTGTATTCTATCTTGAAGACCTTT 57.207 29.630 0.00 0.00 37.36 3.11
402 403 8.777865 TGTGTATTCTATCTTGAAGACCTTTG 57.222 34.615 0.00 0.00 37.36 2.77
403 404 8.375506 TGTGTATTCTATCTTGAAGACCTTTGT 58.624 33.333 0.00 0.00 37.36 2.83
404 405 9.220767 GTGTATTCTATCTTGAAGACCTTTGTT 57.779 33.333 0.00 0.00 37.36 2.83
410 411 9.871238 TCTATCTTGAAGACCTTTGTTATACAC 57.129 33.333 0.00 0.00 0.00 2.90
411 412 7.596749 ATCTTGAAGACCTTTGTTATACACG 57.403 36.000 0.00 0.00 0.00 4.49
412 413 6.518493 TCTTGAAGACCTTTGTTATACACGT 58.482 36.000 0.00 0.00 0.00 4.49
413 414 6.643770 TCTTGAAGACCTTTGTTATACACGTC 59.356 38.462 0.00 0.00 0.00 4.34
414 415 6.092955 TGAAGACCTTTGTTATACACGTCT 57.907 37.500 0.00 0.00 33.31 4.18
415 416 6.518493 TGAAGACCTTTGTTATACACGTCTT 58.482 36.000 12.34 12.34 39.69 3.01
416 417 6.643770 TGAAGACCTTTGTTATACACGTCTTC 59.356 38.462 21.91 21.91 45.10 2.87
417 418 6.092955 AGACCTTTGTTATACACGTCTTCA 57.907 37.500 0.00 0.00 29.86 3.02
418 419 6.698380 AGACCTTTGTTATACACGTCTTCAT 58.302 36.000 0.00 0.00 29.86 2.57
419 420 7.833786 AGACCTTTGTTATACACGTCTTCATA 58.166 34.615 0.00 0.00 29.86 2.15
420 421 8.475639 AGACCTTTGTTATACACGTCTTCATAT 58.524 33.333 0.00 0.00 29.86 1.78
421 422 8.420374 ACCTTTGTTATACACGTCTTCATATG 57.580 34.615 0.00 0.00 0.00 1.78
422 423 7.494625 ACCTTTGTTATACACGTCTTCATATGG 59.505 37.037 2.13 0.00 0.00 2.74
423 424 7.709182 CCTTTGTTATACACGTCTTCATATGGA 59.291 37.037 2.13 0.00 0.00 3.41
424 425 9.261180 CTTTGTTATACACGTCTTCATATGGAT 57.739 33.333 2.13 0.00 0.00 3.41
425 426 9.607988 TTTGTTATACACGTCTTCATATGGATT 57.392 29.630 2.13 0.00 0.00 3.01
426 427 9.607988 TTGTTATACACGTCTTCATATGGATTT 57.392 29.630 2.13 0.00 0.00 2.17
427 428 9.607988 TGTTATACACGTCTTCATATGGATTTT 57.392 29.630 2.13 0.00 0.00 1.82
428 429 9.864034 GTTATACACGTCTTCATATGGATTTTG 57.136 33.333 2.13 0.00 0.00 2.44
429 430 9.825109 TTATACACGTCTTCATATGGATTTTGA 57.175 29.630 2.13 0.00 0.00 2.69
430 431 8.731275 ATACACGTCTTCATATGGATTTTGAA 57.269 30.769 2.13 0.00 0.00 2.69
431 432 7.076842 ACACGTCTTCATATGGATTTTGAAG 57.923 36.000 2.13 5.72 44.89 3.02
444 445 8.884124 ATGGATTTTGAAGAAATAGAGTTCCA 57.116 30.769 0.00 0.00 0.00 3.53
445 446 8.884124 TGGATTTTGAAGAAATAGAGTTCCAT 57.116 30.769 0.00 0.00 0.00 3.41
446 447 9.312904 TGGATTTTGAAGAAATAGAGTTCCATT 57.687 29.630 0.00 0.00 0.00 3.16
447 448 9.578439 GGATTTTGAAGAAATAGAGTTCCATTG 57.422 33.333 0.00 0.00 0.00 2.82
464 465 5.777850 CCATTGTATGGCATGATGAAAGA 57.222 39.130 10.98 0.00 44.70 2.52
465 466 5.769367 CCATTGTATGGCATGATGAAAGAG 58.231 41.667 10.98 0.00 44.70 2.85
466 467 5.533528 CCATTGTATGGCATGATGAAAGAGA 59.466 40.000 10.98 0.00 44.70 3.10
467 468 6.040054 CCATTGTATGGCATGATGAAAGAGAA 59.960 38.462 10.98 0.00 44.70 2.87
468 469 6.688637 TTGTATGGCATGATGAAAGAGAAG 57.311 37.500 10.98 0.00 0.00 2.85
469 470 5.128205 TGTATGGCATGATGAAAGAGAAGG 58.872 41.667 10.98 0.00 0.00 3.46
470 471 3.726557 TGGCATGATGAAAGAGAAGGT 57.273 42.857 0.00 0.00 0.00 3.50
471 472 3.349927 TGGCATGATGAAAGAGAAGGTG 58.650 45.455 0.00 0.00 0.00 4.00
472 473 2.098770 GGCATGATGAAAGAGAAGGTGC 59.901 50.000 0.00 0.00 0.00 5.01
473 474 2.751259 GCATGATGAAAGAGAAGGTGCA 59.249 45.455 0.00 0.00 0.00 4.57
474 475 3.192001 GCATGATGAAAGAGAAGGTGCAA 59.808 43.478 0.00 0.00 0.00 4.08
475 476 4.321452 GCATGATGAAAGAGAAGGTGCAAA 60.321 41.667 0.00 0.00 0.00 3.68
476 477 5.623824 GCATGATGAAAGAGAAGGTGCAAAT 60.624 40.000 0.00 0.00 0.00 2.32
477 478 5.381174 TGATGAAAGAGAAGGTGCAAATG 57.619 39.130 0.00 0.00 0.00 2.32
478 479 5.072055 TGATGAAAGAGAAGGTGCAAATGA 58.928 37.500 0.00 0.00 0.00 2.57
479 480 5.713389 TGATGAAAGAGAAGGTGCAAATGAT 59.287 36.000 0.00 0.00 0.00 2.45
480 481 5.381174 TGAAAGAGAAGGTGCAAATGATG 57.619 39.130 0.00 0.00 0.00 3.07
481 482 5.072055 TGAAAGAGAAGGTGCAAATGATGA 58.928 37.500 0.00 0.00 0.00 2.92
482 483 5.182570 TGAAAGAGAAGGTGCAAATGATGAG 59.817 40.000 0.00 0.00 0.00 2.90
483 484 4.564782 AGAGAAGGTGCAAATGATGAGA 57.435 40.909 0.00 0.00 0.00 3.27
484 485 5.113446 AGAGAAGGTGCAAATGATGAGAT 57.887 39.130 0.00 0.00 0.00 2.75
485 486 4.882427 AGAGAAGGTGCAAATGATGAGATG 59.118 41.667 0.00 0.00 0.00 2.90
486 487 3.952323 AGAAGGTGCAAATGATGAGATGG 59.048 43.478 0.00 0.00 0.00 3.51
487 488 3.657398 AGGTGCAAATGATGAGATGGA 57.343 42.857 0.00 0.00 0.00 3.41
488 489 3.972133 AGGTGCAAATGATGAGATGGAA 58.028 40.909 0.00 0.00 0.00 3.53
489 490 4.543689 AGGTGCAAATGATGAGATGGAAT 58.456 39.130 0.00 0.00 0.00 3.01
490 491 4.341235 AGGTGCAAATGATGAGATGGAATG 59.659 41.667 0.00 0.00 0.00 2.67
491 492 4.500887 GGTGCAAATGATGAGATGGAATGG 60.501 45.833 0.00 0.00 0.00 3.16
492 493 3.069016 TGCAAATGATGAGATGGAATGGC 59.931 43.478 0.00 0.00 0.00 4.40
493 494 3.069016 GCAAATGATGAGATGGAATGGCA 59.931 43.478 0.00 0.00 0.00 4.92
494 495 4.617959 CAAATGATGAGATGGAATGGCAC 58.382 43.478 0.00 0.00 0.00 5.01
495 496 3.878237 ATGATGAGATGGAATGGCACT 57.122 42.857 0.00 0.00 0.00 4.40
496 497 4.987963 ATGATGAGATGGAATGGCACTA 57.012 40.909 0.00 0.00 0.00 2.74
497 498 4.987963 TGATGAGATGGAATGGCACTAT 57.012 40.909 0.00 0.00 0.00 2.12
498 499 4.648651 TGATGAGATGGAATGGCACTATG 58.351 43.478 0.00 0.00 0.00 2.23
499 500 4.103627 TGATGAGATGGAATGGCACTATGT 59.896 41.667 0.00 0.00 0.00 2.29
500 501 3.812262 TGAGATGGAATGGCACTATGTG 58.188 45.455 0.00 0.00 36.51 3.21
501 502 3.200605 TGAGATGGAATGGCACTATGTGT 59.799 43.478 0.00 0.00 35.75 3.72
502 503 4.202441 GAGATGGAATGGCACTATGTGTT 58.798 43.478 0.00 0.00 35.75 3.32
503 504 4.603131 AGATGGAATGGCACTATGTGTTT 58.397 39.130 0.00 0.00 35.75 2.83
504 505 5.018809 AGATGGAATGGCACTATGTGTTTT 58.981 37.500 0.00 0.00 35.75 2.43
505 506 5.481473 AGATGGAATGGCACTATGTGTTTTT 59.519 36.000 0.00 0.00 35.75 1.94
506 507 6.663093 AGATGGAATGGCACTATGTGTTTTTA 59.337 34.615 0.00 0.00 35.75 1.52
507 508 6.849085 TGGAATGGCACTATGTGTTTTTAT 57.151 33.333 0.00 0.00 35.75 1.40
508 509 6.862209 TGGAATGGCACTATGTGTTTTTATC 58.138 36.000 0.00 0.00 35.75 1.75
509 510 5.971202 GGAATGGCACTATGTGTTTTTATCG 59.029 40.000 0.00 0.00 35.75 2.92
510 511 4.955925 TGGCACTATGTGTTTTTATCGG 57.044 40.909 0.00 0.00 35.75 4.18
511 512 3.692101 TGGCACTATGTGTTTTTATCGGG 59.308 43.478 0.00 0.00 35.75 5.14
512 513 3.066203 GGCACTATGTGTTTTTATCGGGG 59.934 47.826 0.00 0.00 35.75 5.73
513 514 3.692593 GCACTATGTGTTTTTATCGGGGT 59.307 43.478 0.00 0.00 35.75 4.95
514 515 4.201881 GCACTATGTGTTTTTATCGGGGTC 60.202 45.833 0.00 0.00 35.75 4.46
515 516 4.334481 CACTATGTGTTTTTATCGGGGTCC 59.666 45.833 0.00 0.00 0.00 4.46
516 517 2.953284 TGTGTTTTTATCGGGGTCCA 57.047 45.000 0.00 0.00 0.00 4.02
517 518 3.443145 TGTGTTTTTATCGGGGTCCAT 57.557 42.857 0.00 0.00 0.00 3.41
518 519 4.571369 TGTGTTTTTATCGGGGTCCATA 57.429 40.909 0.00 0.00 0.00 2.74
519 520 4.519213 TGTGTTTTTATCGGGGTCCATAG 58.481 43.478 0.00 0.00 0.00 2.23
520 521 4.225492 TGTGTTTTTATCGGGGTCCATAGA 59.775 41.667 0.00 0.00 0.00 1.98
521 522 4.573607 GTGTTTTTATCGGGGTCCATAGAC 59.426 45.833 0.00 0.00 42.73 2.59
534 535 5.552870 GTCCATAGACCTACATCCAATGT 57.447 43.478 0.00 0.00 41.00 2.71
535 536 6.665992 GTCCATAGACCTACATCCAATGTA 57.334 41.667 0.31 0.31 39.66 2.29
536 537 7.246171 GTCCATAGACCTACATCCAATGTAT 57.754 40.000 0.57 0.00 39.66 2.29
537 538 8.362464 GTCCATAGACCTACATCCAATGTATA 57.638 38.462 0.57 0.00 39.66 1.47
538 539 8.982723 GTCCATAGACCTACATCCAATGTATAT 58.017 37.037 0.57 0.00 39.66 0.86
571 572 9.391006 ACATTTTATTTCCTATGTGTATGTCGT 57.609 29.630 0.00 0.00 30.51 4.34
574 575 9.438228 TTTTATTTCCTATGTGTATGTCGTTCA 57.562 29.630 0.00 0.00 0.00 3.18
575 576 9.607988 TTTATTTCCTATGTGTATGTCGTTCAT 57.392 29.630 2.17 2.17 40.25 2.57
576 577 6.902224 TTTCCTATGTGTATGTCGTTCATG 57.098 37.500 6.22 0.00 37.91 3.07
577 578 5.592104 TCCTATGTGTATGTCGTTCATGT 57.408 39.130 0.00 0.00 37.91 3.21
578 579 5.972935 TCCTATGTGTATGTCGTTCATGTT 58.027 37.500 0.00 0.00 37.91 2.71
579 580 5.810074 TCCTATGTGTATGTCGTTCATGTTG 59.190 40.000 0.00 0.00 37.91 3.33
580 581 4.944962 ATGTGTATGTCGTTCATGTTGG 57.055 40.909 0.00 0.00 37.91 3.77
581 582 3.996480 TGTGTATGTCGTTCATGTTGGA 58.004 40.909 0.00 0.00 37.91 3.53
582 583 4.381411 TGTGTATGTCGTTCATGTTGGAA 58.619 39.130 0.00 0.00 37.91 3.53
583 584 5.000591 TGTGTATGTCGTTCATGTTGGAAT 58.999 37.500 0.00 0.00 37.91 3.01
584 585 5.471797 TGTGTATGTCGTTCATGTTGGAATT 59.528 36.000 0.00 0.00 37.91 2.17
585 586 6.016693 TGTGTATGTCGTTCATGTTGGAATTT 60.017 34.615 0.00 0.00 37.91 1.82
586 587 6.523201 GTGTATGTCGTTCATGTTGGAATTTC 59.477 38.462 0.00 0.00 37.91 2.17
587 588 5.964958 ATGTCGTTCATGTTGGAATTTCT 57.035 34.783 0.00 0.00 35.19 2.52
588 589 7.604545 TGTATGTCGTTCATGTTGGAATTTCTA 59.395 33.333 0.00 0.00 37.91 2.10
589 590 6.869315 TGTCGTTCATGTTGGAATTTCTAA 57.131 33.333 0.00 0.00 0.00 2.10
590 591 7.265647 TGTCGTTCATGTTGGAATTTCTAAA 57.734 32.000 0.00 0.00 0.00 1.85
591 592 7.708051 TGTCGTTCATGTTGGAATTTCTAAAA 58.292 30.769 0.00 0.00 0.00 1.52
592 593 8.356657 TGTCGTTCATGTTGGAATTTCTAAAAT 58.643 29.630 0.00 0.00 0.00 1.82
593 594 8.638565 GTCGTTCATGTTGGAATTTCTAAAATG 58.361 33.333 15.88 15.88 34.87 2.32
594 595 7.812191 TCGTTCATGTTGGAATTTCTAAAATGG 59.188 33.333 19.70 8.88 34.48 3.16
595 596 7.411804 CGTTCATGTTGGAATTTCTAAAATGGC 60.412 37.037 19.70 13.96 34.48 4.40
596 597 7.243604 TCATGTTGGAATTTCTAAAATGGCT 57.756 32.000 19.70 0.00 34.48 4.75
597 598 7.678837 TCATGTTGGAATTTCTAAAATGGCTT 58.321 30.769 19.70 0.00 34.48 4.35
598 599 8.811017 TCATGTTGGAATTTCTAAAATGGCTTA 58.189 29.630 19.70 4.14 34.48 3.09
599 600 9.603921 CATGTTGGAATTTCTAAAATGGCTTAT 57.396 29.630 14.72 0.00 31.31 1.73
611 612 9.280174 TCTAAAATGGCTTATAAATAGGAACCG 57.720 33.333 0.00 0.00 0.00 4.44
612 613 9.280174 CTAAAATGGCTTATAAATAGGAACCGA 57.720 33.333 0.00 0.00 0.00 4.69
613 614 7.745620 AAATGGCTTATAAATAGGAACCGAG 57.254 36.000 0.00 0.00 0.00 4.63
614 615 5.223449 TGGCTTATAAATAGGAACCGAGG 57.777 43.478 0.00 0.00 0.00 4.63
615 616 4.041198 TGGCTTATAAATAGGAACCGAGGG 59.959 45.833 0.00 0.00 0.00 4.30
616 617 4.285260 GGCTTATAAATAGGAACCGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
617 618 5.480205 GCTTATAAATAGGAACCGAGGGAG 58.520 45.833 0.00 0.00 0.00 4.30
618 619 5.011840 GCTTATAAATAGGAACCGAGGGAGT 59.988 44.000 0.00 0.00 0.00 3.85
619 620 6.210185 GCTTATAAATAGGAACCGAGGGAGTA 59.790 42.308 0.00 0.00 0.00 2.59
620 621 7.093421 GCTTATAAATAGGAACCGAGGGAGTAT 60.093 40.741 0.00 0.00 0.00 2.12
621 622 9.471702 CTTATAAATAGGAACCGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
623 624 8.912614 ATAAATAGGAACCGAGGGAGTATATT 57.087 34.615 0.00 0.00 0.00 1.28
625 626 8.912614 AAATAGGAACCGAGGGAGTATATTAT 57.087 34.615 0.00 0.00 0.00 1.28
628 629 7.957992 AGGAACCGAGGGAGTATATTATAAG 57.042 40.000 0.00 0.00 0.00 1.73
629 630 7.706674 AGGAACCGAGGGAGTATATTATAAGA 58.293 38.462 0.00 0.00 0.00 2.10
630 631 7.614974 AGGAACCGAGGGAGTATATTATAAGAC 59.385 40.741 0.00 0.00 0.00 3.01
631 632 7.614974 GGAACCGAGGGAGTATATTATAAGACT 59.385 40.741 0.00 0.00 0.00 3.24
632 633 8.953223 AACCGAGGGAGTATATTATAAGACTT 57.047 34.615 0.00 0.00 0.00 3.01
633 634 8.350852 ACCGAGGGAGTATATTATAAGACTTG 57.649 38.462 0.00 0.00 0.00 3.16
634 635 7.093858 ACCGAGGGAGTATATTATAAGACTTGC 60.094 40.741 0.00 0.00 0.00 4.01
635 636 7.122948 CCGAGGGAGTATATTATAAGACTTGCT 59.877 40.741 0.00 0.00 0.00 3.91
636 637 9.175312 CGAGGGAGTATATTATAAGACTTGCTA 57.825 37.037 0.00 0.00 0.00 3.49
651 652 7.475137 AGACTTGCTAAATCTCAGTCTAAGT 57.525 36.000 0.00 0.00 33.98 2.24
652 653 7.543756 AGACTTGCTAAATCTCAGTCTAAGTC 58.456 38.462 0.00 0.00 40.86 3.01
653 654 6.326375 ACTTGCTAAATCTCAGTCTAAGTCG 58.674 40.000 0.00 0.00 0.00 4.18
654 655 4.673441 TGCTAAATCTCAGTCTAAGTCGC 58.327 43.478 0.00 0.00 0.00 5.19
655 656 4.045783 GCTAAATCTCAGTCTAAGTCGCC 58.954 47.826 0.00 0.00 0.00 5.54
656 657 3.528597 AAATCTCAGTCTAAGTCGCCC 57.471 47.619 0.00 0.00 0.00 6.13
657 658 1.025812 ATCTCAGTCTAAGTCGCCCG 58.974 55.000 0.00 0.00 0.00 6.13
658 659 0.035725 TCTCAGTCTAAGTCGCCCGA 60.036 55.000 0.00 0.00 0.00 5.14
659 660 0.378962 CTCAGTCTAAGTCGCCCGAG 59.621 60.000 0.00 0.00 0.00 4.63
660 661 0.035725 TCAGTCTAAGTCGCCCGAGA 60.036 55.000 0.00 0.00 0.00 4.04
661 662 1.025812 CAGTCTAAGTCGCCCGAGAT 58.974 55.000 0.00 0.00 0.00 2.75
662 663 2.158856 TCAGTCTAAGTCGCCCGAGATA 60.159 50.000 0.00 0.00 0.00 1.98
663 664 2.814919 CAGTCTAAGTCGCCCGAGATAT 59.185 50.000 0.00 0.00 0.00 1.63
664 665 4.001652 CAGTCTAAGTCGCCCGAGATATA 58.998 47.826 0.00 0.00 0.00 0.86
665 666 4.454847 CAGTCTAAGTCGCCCGAGATATAA 59.545 45.833 0.00 0.00 0.00 0.98
666 667 4.455190 AGTCTAAGTCGCCCGAGATATAAC 59.545 45.833 0.00 0.00 0.00 1.89
667 668 3.755378 TCTAAGTCGCCCGAGATATAACC 59.245 47.826 0.00 0.00 0.00 2.85
668 669 1.991121 AGTCGCCCGAGATATAACCA 58.009 50.000 0.00 0.00 0.00 3.67
669 670 1.612463 AGTCGCCCGAGATATAACCAC 59.388 52.381 0.00 0.00 0.00 4.16
670 671 1.338973 GTCGCCCGAGATATAACCACA 59.661 52.381 0.00 0.00 0.00 4.17
671 672 1.338973 TCGCCCGAGATATAACCACAC 59.661 52.381 0.00 0.00 0.00 3.82
672 673 1.779569 GCCCGAGATATAACCACACG 58.220 55.000 0.00 0.00 0.00 4.49
673 674 1.338973 GCCCGAGATATAACCACACGA 59.661 52.381 0.00 0.00 0.00 4.35
674 675 2.029290 GCCCGAGATATAACCACACGAT 60.029 50.000 0.00 0.00 0.00 3.73
675 676 3.554337 GCCCGAGATATAACCACACGATT 60.554 47.826 0.00 0.00 0.00 3.34
676 677 4.321452 GCCCGAGATATAACCACACGATTA 60.321 45.833 0.00 0.00 0.00 1.75
677 678 5.623824 GCCCGAGATATAACCACACGATTAT 60.624 44.000 0.00 0.00 0.00 1.28
678 679 6.395629 CCCGAGATATAACCACACGATTATT 58.604 40.000 0.00 0.00 0.00 1.40
679 680 6.310467 CCCGAGATATAACCACACGATTATTG 59.690 42.308 0.00 0.00 0.00 1.90
680 681 6.866770 CCGAGATATAACCACACGATTATTGT 59.133 38.462 0.00 0.00 0.00 2.71
681 682 7.384115 CCGAGATATAACCACACGATTATTGTT 59.616 37.037 0.00 0.00 0.00 2.83
682 683 8.425491 CGAGATATAACCACACGATTATTGTTC 58.575 37.037 0.00 0.00 0.00 3.18
683 684 9.477484 GAGATATAACCACACGATTATTGTTCT 57.523 33.333 0.00 0.00 0.00 3.01
684 685 9.477484 AGATATAACCACACGATTATTGTTCTC 57.523 33.333 0.00 0.00 0.00 2.87
685 686 9.256477 GATATAACCACACGATTATTGTTCTCA 57.744 33.333 0.00 0.00 0.00 3.27
686 687 7.915293 ATAACCACACGATTATTGTTCTCAA 57.085 32.000 0.00 0.00 37.98 3.02
687 688 5.607119 ACCACACGATTATTGTTCTCAAC 57.393 39.130 0.00 0.00 36.33 3.18
688 689 5.060506 ACCACACGATTATTGTTCTCAACA 58.939 37.500 0.00 0.00 40.21 3.33
689 690 5.705441 ACCACACGATTATTGTTCTCAACAT 59.295 36.000 0.00 0.00 41.79 2.71
690 691 6.023435 CCACACGATTATTGTTCTCAACATG 58.977 40.000 0.00 0.00 41.79 3.21
691 692 6.348458 CCACACGATTATTGTTCTCAACATGT 60.348 38.462 0.00 0.00 41.79 3.21
692 693 7.148490 CCACACGATTATTGTTCTCAACATGTA 60.148 37.037 0.00 0.00 41.79 2.29
693 694 8.390354 CACACGATTATTGTTCTCAACATGTAT 58.610 33.333 0.00 0.00 41.79 2.29
694 695 8.390354 ACACGATTATTGTTCTCAACATGTATG 58.610 33.333 0.00 0.00 41.79 2.39
695 696 8.390354 CACGATTATTGTTCTCAACATGTATGT 58.610 33.333 0.00 0.00 41.79 2.29
696 697 8.390354 ACGATTATTGTTCTCAACATGTATGTG 58.610 33.333 0.00 0.00 41.79 3.21
697 698 7.852454 CGATTATTGTTCTCAACATGTATGTGG 59.148 37.037 0.00 0.00 41.79 4.17
698 699 7.994425 TTATTGTTCTCAACATGTATGTGGT 57.006 32.000 0.00 0.00 41.79 4.16
699 700 5.687770 TTGTTCTCAACATGTATGTGGTG 57.312 39.130 0.00 0.00 41.79 4.17
700 701 3.501828 TGTTCTCAACATGTATGTGGTGC 59.498 43.478 0.00 0.00 41.61 5.01
701 702 3.415457 TCTCAACATGTATGTGGTGCA 57.585 42.857 0.00 0.00 41.61 4.57
702 703 3.073678 TCTCAACATGTATGTGGTGCAC 58.926 45.455 8.80 8.80 41.61 4.57
721 722 6.262601 GTGCACACACAACATTTACTAGTTT 58.737 36.000 13.17 0.00 46.61 2.66
743 744 3.169908 TGAATAAAAGTCCTTTGCCCCC 58.830 45.455 0.00 0.00 32.36 5.40
838 847 1.442526 CTGCTGCCCCGAATGACATC 61.443 60.000 0.00 0.00 0.00 3.06
846 855 1.528824 CGAATGACATCTGGGGCCT 59.471 57.895 0.84 0.00 0.00 5.19
867 877 5.184287 GCCTAAGGCTACCACAAAACAATTA 59.816 40.000 0.00 0.00 46.69 1.40
904 914 1.065854 AGAACTTTCTCCATCAGCGGG 60.066 52.381 0.00 0.00 29.94 6.13
910 920 3.074369 TCCATCAGCGGGCGAAGA 61.074 61.111 0.00 0.00 0.00 2.87
967 979 2.744202 CAGAAGTTTCCATCACCTTCCG 59.256 50.000 0.00 0.00 35.10 4.30
973 1000 0.252057 TCCATCACCTTCCGGACTCA 60.252 55.000 1.83 0.00 0.00 3.41
998 1025 0.872881 CCCGGCGACCTACATAAACG 60.873 60.000 9.30 0.00 0.00 3.60
1018 1051 2.732468 CTCCTCGCCATCGCATCG 60.732 66.667 0.00 0.00 35.26 3.84
1046 1084 3.837213 AGCATTCCACAAGATTCAACG 57.163 42.857 0.00 0.00 0.00 4.10
1078 1116 2.294078 AAGCCCAACCCGAGGAGAG 61.294 63.158 0.00 0.00 0.00 3.20
1079 1117 2.683933 GCCCAACCCGAGGAGAGA 60.684 66.667 0.00 0.00 0.00 3.10
1367 1414 2.117423 TGCAGGTGGAGGACGAGA 59.883 61.111 0.00 0.00 0.00 4.04
1464 1511 1.796151 GCAAGCTGATGCGCAAGTA 59.204 52.632 17.11 2.28 45.42 2.24
1607 4962 1.066422 GTCGCCTGAGATGCATCGA 59.934 57.895 20.67 11.20 0.00 3.59
1608 4963 0.938637 GTCGCCTGAGATGCATCGAG 60.939 60.000 20.67 18.82 33.90 4.04
1609 4964 1.067084 CGCCTGAGATGCATCGAGT 59.933 57.895 20.67 3.65 0.00 4.18
1610 4965 0.938637 CGCCTGAGATGCATCGAGTC 60.939 60.000 20.67 13.50 0.00 3.36
1611 4966 0.599728 GCCTGAGATGCATCGAGTCC 60.600 60.000 20.67 10.01 0.00 3.85
1612 4967 0.318529 CCTGAGATGCATCGAGTCCG 60.319 60.000 20.67 9.51 37.07 4.79
1613 4968 0.318529 CTGAGATGCATCGAGTCCGG 60.319 60.000 20.67 10.00 36.24 5.14
1614 4969 1.663074 GAGATGCATCGAGTCCGGC 60.663 63.158 20.67 0.00 36.24 6.13
1670 5100 1.857837 GCGAGTTTCATCTGCTAGAGC 59.142 52.381 0.00 0.00 42.50 4.09
1671 5101 2.468831 CGAGTTTCATCTGCTAGAGCC 58.531 52.381 0.00 0.00 41.18 4.70
1672 5102 2.100584 CGAGTTTCATCTGCTAGAGCCT 59.899 50.000 0.00 0.00 41.18 4.58
1685 5115 4.977810 AGCCTAGAGGGTGTGTGT 57.022 55.556 0.00 0.00 45.50 3.72
1686 5116 2.672414 AGCCTAGAGGGTGTGTGTC 58.328 57.895 0.00 0.00 45.50 3.67
1772 5233 3.091545 TCTCTTGGCCACATTTTCCATC 58.908 45.455 3.88 0.00 0.00 3.51
1840 5313 6.037830 TCAGAAAGCTGTGTTGTAACTTAACC 59.962 38.462 0.00 0.00 42.84 2.85
1873 5347 6.939163 GGATAAGAGCAGAACATGTGGAATAT 59.061 38.462 0.00 0.00 0.00 1.28
1899 5373 7.716123 TCAAAATTAGGTGGAAAACGAACTAGA 59.284 33.333 0.00 0.00 0.00 2.43
1914 5388 4.797868 CGAACTAGATCTGAAGTGCTTCTG 59.202 45.833 5.18 11.75 40.14 3.02
1915 5389 5.392487 CGAACTAGATCTGAAGTGCTTCTGA 60.392 44.000 18.93 18.93 46.47 3.27
1916 5390 5.991933 ACTAGATCTGAAGTGCTTCTGAA 57.008 39.130 20.00 7.98 45.88 3.02
1917 5391 6.543430 ACTAGATCTGAAGTGCTTCTGAAT 57.457 37.500 20.00 15.35 45.88 2.57
1918 5392 6.945218 ACTAGATCTGAAGTGCTTCTGAATT 58.055 36.000 20.00 14.81 45.88 2.17
1948 5422 8.511465 AACTCATCATTTTGTTCTTGATTTCG 57.489 30.769 0.00 0.00 0.00 3.46
1996 5470 4.560136 TCATTTTGCTTTGCTCAACGTA 57.440 36.364 0.00 0.00 0.00 3.57
2012 5487 2.419565 CGTAGCAATGCTGTGTTACG 57.580 50.000 19.25 15.24 46.97 3.18
2013 5488 1.724623 CGTAGCAATGCTGTGTTACGT 59.275 47.619 19.25 0.00 46.92 3.57
2014 5489 2.222508 CGTAGCAATGCTGTGTTACGTC 60.223 50.000 19.25 0.00 46.92 4.34
2026 5501 5.163302 TGTGTTACGTCAAAATGACCAAG 57.837 39.130 0.00 0.00 44.20 3.61
2038 5513 7.920682 GTCAAAATGACCAAGTACAAAAGACAT 59.079 33.333 0.00 0.00 41.37 3.06
2071 5546 6.483307 TCTGATAGAATAACAGGGCAAAATCG 59.517 38.462 0.00 0.00 41.29 3.34
2080 5555 2.165030 CAGGGCAAAATCGCTTGATTCT 59.835 45.455 0.00 0.00 41.45 2.40
2082 5557 3.629398 AGGGCAAAATCGCTTGATTCTAG 59.371 43.478 0.00 0.00 41.45 2.43
2083 5558 3.366719 GGCAAAATCGCTTGATTCTAGC 58.633 45.455 9.68 9.68 41.45 3.42
2113 5591 1.545582 CCGAGGCATTGACCAAAACAT 59.454 47.619 0.00 0.00 0.00 2.71
2200 5678 6.868622 AGACACTCAACATCTGATAGTTACC 58.131 40.000 0.00 0.00 32.14 2.85
2561 6044 3.549299 AAGTACTAACGTGTCTGGACG 57.451 47.619 0.00 0.00 45.09 4.79
2564 6047 0.595095 ACTAACGTGTCTGGACGGAC 59.405 55.000 4.34 4.34 43.84 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.818296 CTAAGCGTCACCTAGGCACT 59.182 55.000 9.30 0.00 41.54 4.40
4 5 1.202154 CGTGTCTAAGCGTCACCTAGG 60.202 57.143 7.41 7.41 0.00 3.02
6 7 0.169672 GCGTGTCTAAGCGTCACCTA 59.830 55.000 0.00 0.00 0.00 3.08
7 8 1.080705 GCGTGTCTAAGCGTCACCT 60.081 57.895 0.00 0.00 0.00 4.00
9 10 1.846782 CTATGCGTGTCTAAGCGTCAC 59.153 52.381 0.00 0.00 33.75 3.67
10 11 1.202256 CCTATGCGTGTCTAAGCGTCA 60.202 52.381 0.00 0.00 33.75 4.35
11 12 1.202268 ACCTATGCGTGTCTAAGCGTC 60.202 52.381 0.00 0.00 33.75 5.19
12 13 0.815734 ACCTATGCGTGTCTAAGCGT 59.184 50.000 0.00 0.00 33.75 5.07
13 14 1.200483 CACCTATGCGTGTCTAAGCG 58.800 55.000 0.00 0.00 33.75 4.68
14 15 2.579207 TCACCTATGCGTGTCTAAGC 57.421 50.000 0.00 0.00 35.18 3.09
15 16 3.384668 CCATCACCTATGCGTGTCTAAG 58.615 50.000 0.00 0.00 35.18 2.18
16 17 2.483013 GCCATCACCTATGCGTGTCTAA 60.483 50.000 0.00 0.00 35.18 2.10
17 18 1.068588 GCCATCACCTATGCGTGTCTA 59.931 52.381 0.00 0.00 35.18 2.59
18 19 0.179073 GCCATCACCTATGCGTGTCT 60.179 55.000 0.00 0.00 35.18 3.41
19 20 1.160329 GGCCATCACCTATGCGTGTC 61.160 60.000 0.00 0.00 35.18 3.67
20 21 1.153168 GGCCATCACCTATGCGTGT 60.153 57.895 0.00 0.00 35.18 4.49
21 22 0.747644 TTGGCCATCACCTATGCGTG 60.748 55.000 6.09 0.00 33.92 5.34
22 23 0.748005 GTTGGCCATCACCTATGCGT 60.748 55.000 6.09 0.00 33.92 5.24
23 24 1.775039 CGTTGGCCATCACCTATGCG 61.775 60.000 6.09 0.00 33.92 4.73
24 25 2.024918 CGTTGGCCATCACCTATGC 58.975 57.895 6.09 0.00 33.92 3.14
25 26 2.024918 GCGTTGGCCATCACCTATG 58.975 57.895 6.09 0.00 35.15 2.23
26 27 4.559502 GCGTTGGCCATCACCTAT 57.440 55.556 6.09 0.00 0.00 2.57
37 38 3.458163 TCCTAGGCGAGGCGTTGG 61.458 66.667 9.03 4.76 46.25 3.77
38 39 2.202756 GTCCTAGGCGAGGCGTTG 60.203 66.667 9.03 0.00 46.25 4.10
39 40 0.754217 TATGTCCTAGGCGAGGCGTT 60.754 55.000 9.03 0.00 46.25 4.84
40 41 0.754217 TTATGTCCTAGGCGAGGCGT 60.754 55.000 9.03 8.18 46.25 5.68
41 42 0.039074 CTTATGTCCTAGGCGAGGCG 60.039 60.000 9.03 0.00 46.25 5.52
42 43 1.041437 ACTTATGTCCTAGGCGAGGC 58.959 55.000 9.03 5.05 46.25 4.70
44 45 4.338682 ACTTACACTTATGTCCTAGGCGAG 59.661 45.833 2.96 0.00 40.48 5.03
45 46 4.097437 CACTTACACTTATGTCCTAGGCGA 59.903 45.833 2.96 0.00 40.48 5.54
46 47 4.142227 ACACTTACACTTATGTCCTAGGCG 60.142 45.833 2.96 0.00 40.48 5.52
47 48 5.340439 ACACTTACACTTATGTCCTAGGC 57.660 43.478 2.96 0.00 40.48 3.93
48 49 6.461231 GCCTACACTTACACTTATGTCCTAGG 60.461 46.154 0.82 0.82 40.48 3.02
49 50 6.096423 TGCCTACACTTACACTTATGTCCTAG 59.904 42.308 0.00 0.00 40.48 3.02
50 51 5.953548 TGCCTACACTTACACTTATGTCCTA 59.046 40.000 0.00 0.00 40.48 2.94
51 52 4.775780 TGCCTACACTTACACTTATGTCCT 59.224 41.667 0.00 0.00 40.48 3.85
52 53 5.080969 TGCCTACACTTACACTTATGTCC 57.919 43.478 0.00 0.00 40.48 4.02
53 54 5.109903 CCTGCCTACACTTACACTTATGTC 58.890 45.833 0.00 0.00 40.48 3.06
54 55 4.623171 GCCTGCCTACACTTACACTTATGT 60.623 45.833 0.00 0.00 43.30 2.29
55 56 3.871594 GCCTGCCTACACTTACACTTATG 59.128 47.826 0.00 0.00 0.00 1.90
56 57 3.517901 TGCCTGCCTACACTTACACTTAT 59.482 43.478 0.00 0.00 0.00 1.73
57 58 2.901192 TGCCTGCCTACACTTACACTTA 59.099 45.455 0.00 0.00 0.00 2.24
58 59 1.697432 TGCCTGCCTACACTTACACTT 59.303 47.619 0.00 0.00 0.00 3.16
59 60 1.348064 TGCCTGCCTACACTTACACT 58.652 50.000 0.00 0.00 0.00 3.55
60 61 2.076863 CTTGCCTGCCTACACTTACAC 58.923 52.381 0.00 0.00 0.00 2.90
61 62 1.610624 GCTTGCCTGCCTACACTTACA 60.611 52.381 0.00 0.00 0.00 2.41
62 63 1.087501 GCTTGCCTGCCTACACTTAC 58.912 55.000 0.00 0.00 0.00 2.34
63 64 0.690192 TGCTTGCCTGCCTACACTTA 59.310 50.000 0.00 0.00 0.00 2.24
64 65 0.178992 TTGCTTGCCTGCCTACACTT 60.179 50.000 0.00 0.00 0.00 3.16
65 66 0.607489 CTTGCTTGCCTGCCTACACT 60.607 55.000 0.00 0.00 0.00 3.55
66 67 0.606401 TCTTGCTTGCCTGCCTACAC 60.606 55.000 0.00 0.00 0.00 2.90
67 68 0.110295 TTCTTGCTTGCCTGCCTACA 59.890 50.000 0.00 0.00 0.00 2.74
68 69 1.467920 ATTCTTGCTTGCCTGCCTAC 58.532 50.000 0.00 0.00 0.00 3.18
69 70 1.820519 CAATTCTTGCTTGCCTGCCTA 59.179 47.619 0.00 0.00 0.00 3.93
70 71 0.606604 CAATTCTTGCTTGCCTGCCT 59.393 50.000 0.00 0.00 0.00 4.75
71 72 3.132863 CAATTCTTGCTTGCCTGCC 57.867 52.632 0.00 0.00 0.00 4.85
81 82 1.133025 CGCTTGGGTAGGCAATTCTTG 59.867 52.381 0.00 0.00 0.00 3.02
82 83 1.004277 TCGCTTGGGTAGGCAATTCTT 59.996 47.619 0.00 0.00 0.00 2.52
83 84 0.618458 TCGCTTGGGTAGGCAATTCT 59.382 50.000 0.00 0.00 0.00 2.40
84 85 1.017387 CTCGCTTGGGTAGGCAATTC 58.983 55.000 0.00 0.00 0.00 2.17
85 86 1.032114 GCTCGCTTGGGTAGGCAATT 61.032 55.000 0.00 0.00 0.00 2.32
86 87 1.452108 GCTCGCTTGGGTAGGCAAT 60.452 57.895 0.00 0.00 0.00 3.56
87 88 2.046314 GCTCGCTTGGGTAGGCAA 60.046 61.111 0.00 0.00 0.00 4.52
88 89 2.196997 ATTGCTCGCTTGGGTAGGCA 62.197 55.000 0.00 0.00 0.00 4.75
89 90 1.440145 GATTGCTCGCTTGGGTAGGC 61.440 60.000 0.00 0.00 0.00 3.93
90 91 0.107703 TGATTGCTCGCTTGGGTAGG 60.108 55.000 0.00 0.00 0.00 3.18
91 92 1.600957 CATGATTGCTCGCTTGGGTAG 59.399 52.381 0.00 0.00 0.00 3.18
92 93 1.667236 CATGATTGCTCGCTTGGGTA 58.333 50.000 0.00 0.00 0.00 3.69
93 94 1.660560 GCATGATTGCTCGCTTGGGT 61.661 55.000 0.00 0.00 45.77 4.51
94 95 1.065273 GCATGATTGCTCGCTTGGG 59.935 57.895 0.00 0.00 45.77 4.12
95 96 4.704007 GCATGATTGCTCGCTTGG 57.296 55.556 0.00 0.00 45.77 3.61
111 112 6.146510 CCATTTGACATACAATGCAATATGGC 59.853 38.462 16.15 14.49 37.33 4.40
112 113 6.647481 CCCATTTGACATACAATGCAATATGG 59.353 38.462 16.15 17.13 38.36 2.74
113 114 6.146510 GCCCATTTGACATACAATGCAATATG 59.853 38.462 12.17 12.17 38.36 1.78
114 115 6.225318 GCCCATTTGACATACAATGCAATAT 58.775 36.000 0.00 0.00 38.36 1.28
115 116 5.453057 GGCCCATTTGACATACAATGCAATA 60.453 40.000 0.00 0.00 38.36 1.90
116 117 4.444536 GCCCATTTGACATACAATGCAAT 58.555 39.130 0.00 0.00 38.36 3.56
117 118 3.369261 GGCCCATTTGACATACAATGCAA 60.369 43.478 0.00 0.00 38.36 4.08
118 119 2.168106 GGCCCATTTGACATACAATGCA 59.832 45.455 0.00 0.00 38.36 3.96
119 120 2.168106 TGGCCCATTTGACATACAATGC 59.832 45.455 0.00 0.00 38.36 3.56
120 121 4.675976 ATGGCCCATTTGACATACAATG 57.324 40.909 0.00 0.00 38.36 2.82
121 122 6.014327 GGAATATGGCCCATTTGACATACAAT 60.014 38.462 0.00 0.00 38.36 2.71
122 123 5.304101 GGAATATGGCCCATTTGACATACAA 59.696 40.000 0.00 0.00 36.65 2.41
123 124 4.832266 GGAATATGGCCCATTTGACATACA 59.168 41.667 0.00 0.00 0.00 2.29
124 125 5.079643 AGGAATATGGCCCATTTGACATAC 58.920 41.667 0.00 0.00 0.00 2.39
125 126 5.337956 AGGAATATGGCCCATTTGACATA 57.662 39.130 0.00 0.00 0.00 2.29
126 127 4.203342 AGGAATATGGCCCATTTGACAT 57.797 40.909 0.00 0.00 0.00 3.06
127 128 3.686227 AGGAATATGGCCCATTTGACA 57.314 42.857 0.00 0.00 0.00 3.58
128 129 4.463891 CCATAGGAATATGGCCCATTTGAC 59.536 45.833 0.00 0.00 40.34 3.18
129 130 4.676109 CCATAGGAATATGGCCCATTTGA 58.324 43.478 0.00 0.00 40.34 2.69
139 140 3.879295 CCCGCTATTGCCATAGGAATATG 59.121 47.826 6.92 0.00 33.95 1.78
140 141 3.523564 ACCCGCTATTGCCATAGGAATAT 59.476 43.478 6.92 0.00 33.95 1.28
141 142 2.910319 ACCCGCTATTGCCATAGGAATA 59.090 45.455 6.92 0.00 33.95 1.75
142 143 1.705186 ACCCGCTATTGCCATAGGAAT 59.295 47.619 6.92 0.00 33.95 3.01
143 144 1.136828 ACCCGCTATTGCCATAGGAA 58.863 50.000 6.92 0.00 33.95 3.36
144 145 1.899814 CTACCCGCTATTGCCATAGGA 59.100 52.381 6.92 0.00 33.95 2.94
145 146 1.623811 ACTACCCGCTATTGCCATAGG 59.376 52.381 6.92 0.00 33.95 2.57
146 147 3.402628 AACTACCCGCTATTGCCATAG 57.597 47.619 0.37 0.37 36.20 2.23
147 148 4.345837 AGTTAACTACCCGCTATTGCCATA 59.654 41.667 6.26 0.00 35.36 2.74
148 149 3.135895 AGTTAACTACCCGCTATTGCCAT 59.864 43.478 6.26 0.00 35.36 4.40
149 150 2.502538 AGTTAACTACCCGCTATTGCCA 59.497 45.455 6.26 0.00 35.36 4.92
150 151 3.189618 AGTTAACTACCCGCTATTGCC 57.810 47.619 6.26 0.00 35.36 4.52
151 152 6.856135 AATAAGTTAACTACCCGCTATTGC 57.144 37.500 8.92 0.00 0.00 3.56
155 156 9.643693 GCATATAAATAAGTTAACTACCCGCTA 57.356 33.333 8.92 0.00 0.00 4.26
156 157 7.605309 GGCATATAAATAAGTTAACTACCCGCT 59.395 37.037 8.92 0.00 0.00 5.52
157 158 7.148356 GGGCATATAAATAAGTTAACTACCCGC 60.148 40.741 8.92 2.81 0.00 6.13
158 159 8.098912 AGGGCATATAAATAAGTTAACTACCCG 58.901 37.037 8.92 0.00 33.89 5.28
179 180 9.253832 CATGGGTATCAATATTAATTTAGGGCA 57.746 33.333 0.00 0.00 0.00 5.36
180 181 9.255029 ACATGGGTATCAATATTAATTTAGGGC 57.745 33.333 0.00 0.00 0.00 5.19
198 199 9.263446 GGTCTATCTATGGTTATTACATGGGTA 57.737 37.037 0.00 0.00 0.00 3.69
199 200 7.962003 AGGTCTATCTATGGTTATTACATGGGT 59.038 37.037 0.00 0.00 0.00 4.51
200 201 8.260818 CAGGTCTATCTATGGTTATTACATGGG 58.739 40.741 0.00 0.00 0.00 4.00
201 202 9.035890 TCAGGTCTATCTATGGTTATTACATGG 57.964 37.037 0.00 0.00 0.00 3.66
211 212 9.523168 GTTTCTACTATCAGGTCTATCTATGGT 57.477 37.037 0.00 0.00 0.00 3.55
212 213 9.747898 AGTTTCTACTATCAGGTCTATCTATGG 57.252 37.037 0.00 0.00 31.21 2.74
220 221 9.134055 GGTAATACAGTTTCTACTATCAGGTCT 57.866 37.037 0.00 0.00 31.96 3.85
221 222 8.074972 CGGTAATACAGTTTCTACTATCAGGTC 58.925 40.741 0.00 0.00 31.96 3.85
222 223 7.469732 GCGGTAATACAGTTTCTACTATCAGGT 60.470 40.741 0.00 0.00 31.96 4.00
223 224 6.862090 GCGGTAATACAGTTTCTACTATCAGG 59.138 42.308 0.00 0.00 31.96 3.86
224 225 6.862090 GGCGGTAATACAGTTTCTACTATCAG 59.138 42.308 0.00 0.00 31.96 2.90
225 226 6.548622 AGGCGGTAATACAGTTTCTACTATCA 59.451 38.462 0.00 0.00 31.96 2.15
226 227 6.979465 AGGCGGTAATACAGTTTCTACTATC 58.021 40.000 0.00 0.00 31.96 2.08
227 228 6.973460 AGGCGGTAATACAGTTTCTACTAT 57.027 37.500 0.00 0.00 31.96 2.12
228 229 7.227512 GTCTAGGCGGTAATACAGTTTCTACTA 59.772 40.741 0.00 0.00 31.96 1.82
229 230 6.039159 GTCTAGGCGGTAATACAGTTTCTACT 59.961 42.308 0.00 0.00 34.00 2.57
230 231 6.205071 GTCTAGGCGGTAATACAGTTTCTAC 58.795 44.000 0.00 0.00 0.00 2.59
231 232 5.300286 GGTCTAGGCGGTAATACAGTTTCTA 59.700 44.000 0.00 0.00 0.00 2.10
232 233 4.099113 GGTCTAGGCGGTAATACAGTTTCT 59.901 45.833 0.00 0.00 0.00 2.52
233 234 4.366586 GGTCTAGGCGGTAATACAGTTTC 58.633 47.826 0.00 0.00 0.00 2.78
234 235 3.181483 CGGTCTAGGCGGTAATACAGTTT 60.181 47.826 0.00 0.00 0.00 2.66
235 236 2.360165 CGGTCTAGGCGGTAATACAGTT 59.640 50.000 0.00 0.00 0.00 3.16
236 237 1.952296 CGGTCTAGGCGGTAATACAGT 59.048 52.381 0.00 0.00 0.00 3.55
237 238 1.952296 ACGGTCTAGGCGGTAATACAG 59.048 52.381 5.65 0.00 0.00 2.74
238 239 1.677576 CACGGTCTAGGCGGTAATACA 59.322 52.381 7.28 0.00 0.00 2.29
239 240 1.601412 GCACGGTCTAGGCGGTAATAC 60.601 57.143 7.28 0.00 0.00 1.89
240 241 0.670162 GCACGGTCTAGGCGGTAATA 59.330 55.000 7.28 0.00 0.00 0.98
241 242 1.440476 GCACGGTCTAGGCGGTAAT 59.560 57.895 7.28 0.00 0.00 1.89
242 243 2.713967 GGCACGGTCTAGGCGGTAA 61.714 63.158 7.28 0.00 0.00 2.85
243 244 2.269520 TAGGCACGGTCTAGGCGGTA 62.270 60.000 7.28 0.00 35.18 4.02
244 245 3.650298 TAGGCACGGTCTAGGCGGT 62.650 63.158 1.04 1.04 35.18 5.68
245 246 2.831742 TAGGCACGGTCTAGGCGG 60.832 66.667 0.00 0.00 35.18 6.13
246 247 2.722487 CTAGGCACGGTCTAGGCG 59.278 66.667 5.04 0.00 34.57 5.52
258 259 2.180862 GTGCTTAAGCGCCCTAGGC 61.181 63.158 27.05 9.12 45.15 3.93
259 260 4.126524 GTGCTTAAGCGCCCTAGG 57.873 61.111 27.05 0.06 45.15 3.02
266 267 1.432270 GCCTAGGCAGTGCTTAAGCG 61.432 60.000 29.33 9.53 41.92 4.68
267 268 2.398803 GCCTAGGCAGTGCTTAAGC 58.601 57.895 29.33 20.84 41.49 3.09
280 281 2.862223 GCCCTCGCCTAGTGCCTAG 61.862 68.421 3.06 3.06 36.24 3.02
281 282 2.838225 GCCCTCGCCTAGTGCCTA 60.838 66.667 0.00 0.00 36.24 3.93
297 298 1.062525 CGTAAGCAAGGCGATTGGC 59.937 57.895 0.00 0.00 39.47 4.52
326 327 9.349713 ACTTAGTCATACAACCAAAGATGAAAA 57.650 29.630 0.00 0.00 30.43 2.29
327 328 8.918202 ACTTAGTCATACAACCAAAGATGAAA 57.082 30.769 0.00 0.00 30.43 2.69
328 329 8.918202 AACTTAGTCATACAACCAAAGATGAA 57.082 30.769 0.00 0.00 30.43 2.57
329 330 8.918202 AAACTTAGTCATACAACCAAAGATGA 57.082 30.769 0.00 0.00 0.00 2.92
330 331 9.965824 AAAAACTTAGTCATACAACCAAAGATG 57.034 29.630 0.00 0.00 0.00 2.90
360 361 3.738982 ACACAAAGGCCTTAAAATTGCC 58.261 40.909 20.84 0.00 45.70 4.52
361 362 6.873605 AGAATACACAAAGGCCTTAAAATTGC 59.126 34.615 20.84 5.52 0.00 3.56
364 365 9.700831 AGATAGAATACACAAAGGCCTTAAAAT 57.299 29.630 20.84 7.95 0.00 1.82
365 366 9.528489 AAGATAGAATACACAAAGGCCTTAAAA 57.472 29.630 20.84 3.30 0.00 1.52
366 367 8.956426 CAAGATAGAATACACAAAGGCCTTAAA 58.044 33.333 20.84 2.90 0.00 1.52
367 368 8.325787 TCAAGATAGAATACACAAAGGCCTTAA 58.674 33.333 20.84 2.52 0.00 1.85
368 369 7.857456 TCAAGATAGAATACACAAAGGCCTTA 58.143 34.615 20.84 2.11 0.00 2.69
369 370 6.721318 TCAAGATAGAATACACAAAGGCCTT 58.279 36.000 13.78 13.78 0.00 4.35
370 371 6.313519 TCAAGATAGAATACACAAAGGCCT 57.686 37.500 0.00 0.00 0.00 5.19
371 372 6.823689 TCTTCAAGATAGAATACACAAAGGCC 59.176 38.462 0.00 0.00 0.00 5.19
372 373 7.201652 GGTCTTCAAGATAGAATACACAAAGGC 60.202 40.741 0.00 0.00 0.00 4.35
373 374 8.043710 AGGTCTTCAAGATAGAATACACAAAGG 58.956 37.037 0.00 0.00 0.00 3.11
374 375 9.442047 AAGGTCTTCAAGATAGAATACACAAAG 57.558 33.333 0.00 0.00 0.00 2.77
375 376 9.793259 AAAGGTCTTCAAGATAGAATACACAAA 57.207 29.630 0.00 0.00 0.00 2.83
376 377 9.219603 CAAAGGTCTTCAAGATAGAATACACAA 57.780 33.333 0.00 0.00 0.00 3.33
377 378 8.375506 ACAAAGGTCTTCAAGATAGAATACACA 58.624 33.333 0.00 0.00 0.00 3.72
378 379 8.779354 ACAAAGGTCTTCAAGATAGAATACAC 57.221 34.615 0.00 0.00 0.00 2.90
384 385 9.871238 GTGTATAACAAAGGTCTTCAAGATAGA 57.129 33.333 0.00 0.00 0.00 1.98
385 386 8.808529 CGTGTATAACAAAGGTCTTCAAGATAG 58.191 37.037 0.00 0.00 0.00 2.08
386 387 8.308931 ACGTGTATAACAAAGGTCTTCAAGATA 58.691 33.333 0.00 0.00 0.00 1.98
387 388 7.159372 ACGTGTATAACAAAGGTCTTCAAGAT 58.841 34.615 0.00 0.00 0.00 2.40
388 389 6.518493 ACGTGTATAACAAAGGTCTTCAAGA 58.482 36.000 0.00 0.00 0.00 3.02
389 390 6.645415 AGACGTGTATAACAAAGGTCTTCAAG 59.355 38.462 0.00 0.00 34.11 3.02
390 391 6.518493 AGACGTGTATAACAAAGGTCTTCAA 58.482 36.000 0.00 0.00 34.11 2.69
391 392 6.092955 AGACGTGTATAACAAAGGTCTTCA 57.907 37.500 0.00 0.00 34.11 3.02
392 393 7.046862 GAAGACGTGTATAACAAAGGTCTTC 57.953 40.000 21.21 21.21 44.74 2.87
393 394 6.518493 TGAAGACGTGTATAACAAAGGTCTT 58.482 36.000 16.02 16.02 42.62 3.01
394 395 6.092955 TGAAGACGTGTATAACAAAGGTCT 57.907 37.500 0.00 4.69 37.15 3.85
395 396 6.963049 ATGAAGACGTGTATAACAAAGGTC 57.037 37.500 0.00 0.00 0.00 3.85
396 397 7.494625 CCATATGAAGACGTGTATAACAAAGGT 59.505 37.037 3.65 0.00 0.00 3.50
397 398 7.709182 TCCATATGAAGACGTGTATAACAAAGG 59.291 37.037 3.65 0.00 0.00 3.11
398 399 8.642908 TCCATATGAAGACGTGTATAACAAAG 57.357 34.615 3.65 0.00 0.00 2.77
399 400 9.607988 AATCCATATGAAGACGTGTATAACAAA 57.392 29.630 3.65 0.00 0.00 2.83
400 401 9.607988 AAATCCATATGAAGACGTGTATAACAA 57.392 29.630 3.65 0.00 0.00 2.83
401 402 9.607988 AAAATCCATATGAAGACGTGTATAACA 57.392 29.630 3.65 0.00 0.00 2.41
402 403 9.864034 CAAAATCCATATGAAGACGTGTATAAC 57.136 33.333 3.65 0.00 0.00 1.89
403 404 9.825109 TCAAAATCCATATGAAGACGTGTATAA 57.175 29.630 3.65 0.00 0.00 0.98
404 405 9.825109 TTCAAAATCCATATGAAGACGTGTATA 57.175 29.630 3.65 0.00 0.00 1.47
405 406 8.731275 TTCAAAATCCATATGAAGACGTGTAT 57.269 30.769 3.65 0.00 0.00 2.29
418 419 9.973661 TGGAACTCTATTTCTTCAAAATCCATA 57.026 29.630 0.00 0.00 0.00 2.74
419 420 8.884124 TGGAACTCTATTTCTTCAAAATCCAT 57.116 30.769 0.00 0.00 0.00 3.41
420 421 8.884124 ATGGAACTCTATTTCTTCAAAATCCA 57.116 30.769 0.00 0.00 0.00 3.41
421 422 9.578439 CAATGGAACTCTATTTCTTCAAAATCC 57.422 33.333 0.00 0.00 0.00 3.01
443 444 6.628919 TCTCTTTCATCATGCCATACAATG 57.371 37.500 0.00 0.00 0.00 2.82
444 445 6.264744 CCTTCTCTTTCATCATGCCATACAAT 59.735 38.462 0.00 0.00 0.00 2.71
445 446 5.591472 CCTTCTCTTTCATCATGCCATACAA 59.409 40.000 0.00 0.00 0.00 2.41
446 447 5.128205 CCTTCTCTTTCATCATGCCATACA 58.872 41.667 0.00 0.00 0.00 2.29
447 448 5.008415 CACCTTCTCTTTCATCATGCCATAC 59.992 44.000 0.00 0.00 0.00 2.39
448 449 5.128205 CACCTTCTCTTTCATCATGCCATA 58.872 41.667 0.00 0.00 0.00 2.74
449 450 3.952323 CACCTTCTCTTTCATCATGCCAT 59.048 43.478 0.00 0.00 0.00 4.40
450 451 3.349927 CACCTTCTCTTTCATCATGCCA 58.650 45.455 0.00 0.00 0.00 4.92
451 452 2.098770 GCACCTTCTCTTTCATCATGCC 59.901 50.000 0.00 0.00 0.00 4.40
452 453 2.751259 TGCACCTTCTCTTTCATCATGC 59.249 45.455 0.00 0.00 0.00 4.06
453 454 5.381174 TTTGCACCTTCTCTTTCATCATG 57.619 39.130 0.00 0.00 0.00 3.07
454 455 5.713389 TCATTTGCACCTTCTCTTTCATCAT 59.287 36.000 0.00 0.00 0.00 2.45
455 456 5.072055 TCATTTGCACCTTCTCTTTCATCA 58.928 37.500 0.00 0.00 0.00 3.07
456 457 5.633830 TCATTTGCACCTTCTCTTTCATC 57.366 39.130 0.00 0.00 0.00 2.92
457 458 5.713389 TCATCATTTGCACCTTCTCTTTCAT 59.287 36.000 0.00 0.00 0.00 2.57
458 459 5.072055 TCATCATTTGCACCTTCTCTTTCA 58.928 37.500 0.00 0.00 0.00 2.69
459 460 5.413833 TCTCATCATTTGCACCTTCTCTTTC 59.586 40.000 0.00 0.00 0.00 2.62
460 461 5.319453 TCTCATCATTTGCACCTTCTCTTT 58.681 37.500 0.00 0.00 0.00 2.52
461 462 4.914983 TCTCATCATTTGCACCTTCTCTT 58.085 39.130 0.00 0.00 0.00 2.85
462 463 4.564782 TCTCATCATTTGCACCTTCTCT 57.435 40.909 0.00 0.00 0.00 3.10
463 464 4.036498 CCATCTCATCATTTGCACCTTCTC 59.964 45.833 0.00 0.00 0.00 2.87
464 465 3.952323 CCATCTCATCATTTGCACCTTCT 59.048 43.478 0.00 0.00 0.00 2.85
465 466 3.949754 TCCATCTCATCATTTGCACCTTC 59.050 43.478 0.00 0.00 0.00 3.46
466 467 3.972133 TCCATCTCATCATTTGCACCTT 58.028 40.909 0.00 0.00 0.00 3.50
467 468 3.657398 TCCATCTCATCATTTGCACCT 57.343 42.857 0.00 0.00 0.00 4.00
468 469 4.500887 CCATTCCATCTCATCATTTGCACC 60.501 45.833 0.00 0.00 0.00 5.01
469 470 4.617959 CCATTCCATCTCATCATTTGCAC 58.382 43.478 0.00 0.00 0.00 4.57
470 471 3.069016 GCCATTCCATCTCATCATTTGCA 59.931 43.478 0.00 0.00 0.00 4.08
471 472 3.069016 TGCCATTCCATCTCATCATTTGC 59.931 43.478 0.00 0.00 0.00 3.68
472 473 4.341235 AGTGCCATTCCATCTCATCATTTG 59.659 41.667 0.00 0.00 0.00 2.32
473 474 4.543689 AGTGCCATTCCATCTCATCATTT 58.456 39.130 0.00 0.00 0.00 2.32
474 475 4.180377 AGTGCCATTCCATCTCATCATT 57.820 40.909 0.00 0.00 0.00 2.57
475 476 3.878237 AGTGCCATTCCATCTCATCAT 57.122 42.857 0.00 0.00 0.00 2.45
476 477 4.103627 ACATAGTGCCATTCCATCTCATCA 59.896 41.667 0.00 0.00 0.00 3.07
477 478 4.454847 CACATAGTGCCATTCCATCTCATC 59.545 45.833 0.00 0.00 0.00 2.92
478 479 4.141321 ACACATAGTGCCATTCCATCTCAT 60.141 41.667 0.00 0.00 36.98 2.90
479 480 3.200605 ACACATAGTGCCATTCCATCTCA 59.799 43.478 0.00 0.00 36.98 3.27
480 481 3.813443 ACACATAGTGCCATTCCATCTC 58.187 45.455 0.00 0.00 36.98 2.75
481 482 3.939740 ACACATAGTGCCATTCCATCT 57.060 42.857 0.00 0.00 36.98 2.90
482 483 4.989279 AAACACATAGTGCCATTCCATC 57.011 40.909 0.00 0.00 36.98 3.51
483 484 5.743636 AAAAACACATAGTGCCATTCCAT 57.256 34.783 0.00 0.00 36.98 3.41
484 485 6.404184 CGATAAAAACACATAGTGCCATTCCA 60.404 38.462 0.00 0.00 36.98 3.53
485 486 5.971202 CGATAAAAACACATAGTGCCATTCC 59.029 40.000 0.00 0.00 36.98 3.01
486 487 5.971202 CCGATAAAAACACATAGTGCCATTC 59.029 40.000 0.00 0.00 36.98 2.67
487 488 5.163561 CCCGATAAAAACACATAGTGCCATT 60.164 40.000 0.00 0.00 36.98 3.16
488 489 4.338118 CCCGATAAAAACACATAGTGCCAT 59.662 41.667 0.00 0.00 36.98 4.40
489 490 3.692101 CCCGATAAAAACACATAGTGCCA 59.308 43.478 0.00 0.00 36.98 4.92
490 491 3.066203 CCCCGATAAAAACACATAGTGCC 59.934 47.826 0.00 0.00 36.98 5.01
491 492 3.692593 ACCCCGATAAAAACACATAGTGC 59.307 43.478 0.00 0.00 36.98 4.40
492 493 4.334481 GGACCCCGATAAAAACACATAGTG 59.666 45.833 0.00 0.00 39.75 2.74
493 494 4.019141 TGGACCCCGATAAAAACACATAGT 60.019 41.667 0.00 0.00 0.00 2.12
494 495 4.519213 TGGACCCCGATAAAAACACATAG 58.481 43.478 0.00 0.00 0.00 2.23
495 496 4.571369 TGGACCCCGATAAAAACACATA 57.429 40.909 0.00 0.00 0.00 2.29
496 497 3.443145 TGGACCCCGATAAAAACACAT 57.557 42.857 0.00 0.00 0.00 3.21
497 498 2.953284 TGGACCCCGATAAAAACACA 57.047 45.000 0.00 0.00 0.00 3.72
498 499 4.573607 GTCTATGGACCCCGATAAAAACAC 59.426 45.833 0.00 0.00 36.53 3.32
499 500 4.773013 GTCTATGGACCCCGATAAAAACA 58.227 43.478 0.00 0.00 36.53 2.83
512 513 5.552870 ACATTGGATGTAGGTCTATGGAC 57.447 43.478 0.00 0.00 42.78 4.02
545 546 9.391006 ACGACATACACATAGGAAATAAAATGT 57.609 29.630 0.00 0.00 32.91 2.71
548 549 9.438228 TGAACGACATACACATAGGAAATAAAA 57.562 29.630 0.00 0.00 0.00 1.52
549 550 9.607988 ATGAACGACATACACATAGGAAATAAA 57.392 29.630 0.00 0.00 37.46 1.40
550 551 9.040939 CATGAACGACATACACATAGGAAATAA 57.959 33.333 0.00 0.00 37.46 1.40
551 552 8.201464 ACATGAACGACATACACATAGGAAATA 58.799 33.333 0.00 0.00 37.46 1.40
552 553 7.047891 ACATGAACGACATACACATAGGAAAT 58.952 34.615 0.00 0.00 37.46 2.17
553 554 6.403049 ACATGAACGACATACACATAGGAAA 58.597 36.000 0.00 0.00 37.46 3.13
554 555 5.972935 ACATGAACGACATACACATAGGAA 58.027 37.500 0.00 0.00 37.46 3.36
555 556 5.592104 ACATGAACGACATACACATAGGA 57.408 39.130 0.00 0.00 37.46 2.94
556 557 5.006649 CCAACATGAACGACATACACATAGG 59.993 44.000 0.00 0.00 37.46 2.57
557 558 5.810074 TCCAACATGAACGACATACACATAG 59.190 40.000 0.00 0.00 37.46 2.23
558 559 5.725362 TCCAACATGAACGACATACACATA 58.275 37.500 0.00 0.00 37.46 2.29
559 560 4.574892 TCCAACATGAACGACATACACAT 58.425 39.130 0.00 0.00 37.46 3.21
560 561 3.996480 TCCAACATGAACGACATACACA 58.004 40.909 0.00 0.00 37.46 3.72
561 562 5.545658 ATTCCAACATGAACGACATACAC 57.454 39.130 0.00 0.00 37.46 2.90
562 563 6.429692 AGAAATTCCAACATGAACGACATACA 59.570 34.615 0.00 0.00 37.46 2.29
563 564 6.842163 AGAAATTCCAACATGAACGACATAC 58.158 36.000 0.00 0.00 37.46 2.39
564 565 8.554835 TTAGAAATTCCAACATGAACGACATA 57.445 30.769 0.00 0.00 37.46 2.29
565 566 5.964958 AGAAATTCCAACATGAACGACAT 57.035 34.783 0.00 0.00 40.17 3.06
566 567 6.869315 TTAGAAATTCCAACATGAACGACA 57.131 33.333 0.00 0.00 0.00 4.35
567 568 8.638565 CATTTTAGAAATTCCAACATGAACGAC 58.361 33.333 0.00 0.00 0.00 4.34
568 569 7.812191 CCATTTTAGAAATTCCAACATGAACGA 59.188 33.333 0.00 0.00 0.00 3.85
569 570 7.411804 GCCATTTTAGAAATTCCAACATGAACG 60.412 37.037 0.00 0.00 0.00 3.95
570 571 7.603784 AGCCATTTTAGAAATTCCAACATGAAC 59.396 33.333 0.00 0.00 0.00 3.18
571 572 7.678837 AGCCATTTTAGAAATTCCAACATGAA 58.321 30.769 0.00 0.00 0.00 2.57
572 573 7.243604 AGCCATTTTAGAAATTCCAACATGA 57.756 32.000 0.00 0.00 0.00 3.07
573 574 7.910441 AAGCCATTTTAGAAATTCCAACATG 57.090 32.000 0.00 0.00 0.00 3.21
585 586 9.280174 CGGTTCCTATTTATAAGCCATTTTAGA 57.720 33.333 0.00 0.00 0.00 2.10
586 587 9.280174 TCGGTTCCTATTTATAAGCCATTTTAG 57.720 33.333 0.00 0.00 0.00 1.85
587 588 9.280174 CTCGGTTCCTATTTATAAGCCATTTTA 57.720 33.333 0.00 0.00 0.00 1.52
588 589 7.230712 CCTCGGTTCCTATTTATAAGCCATTTT 59.769 37.037 0.00 0.00 0.00 1.82
589 590 6.715264 CCTCGGTTCCTATTTATAAGCCATTT 59.285 38.462 0.00 0.00 0.00 2.32
590 591 6.238648 CCTCGGTTCCTATTTATAAGCCATT 58.761 40.000 0.00 0.00 0.00 3.16
591 592 5.280521 CCCTCGGTTCCTATTTATAAGCCAT 60.281 44.000 0.00 0.00 0.00 4.40
592 593 4.041198 CCCTCGGTTCCTATTTATAAGCCA 59.959 45.833 0.00 0.00 0.00 4.75
593 594 4.285260 TCCCTCGGTTCCTATTTATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
594 595 5.011840 ACTCCCTCGGTTCCTATTTATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
595 596 6.667558 ACTCCCTCGGTTCCTATTTATAAG 57.332 41.667 0.00 0.00 0.00 1.73
598 599 8.912614 AATATACTCCCTCGGTTCCTATTTAT 57.087 34.615 0.00 0.00 0.00 1.40
600 601 8.912614 ATAATATACTCCCTCGGTTCCTATTT 57.087 34.615 0.00 0.00 0.00 1.40
602 603 9.643735 CTTATAATATACTCCCTCGGTTCCTAT 57.356 37.037 0.00 0.00 0.00 2.57
603 604 8.839745 TCTTATAATATACTCCCTCGGTTCCTA 58.160 37.037 0.00 0.00 0.00 2.94
604 605 7.614974 GTCTTATAATATACTCCCTCGGTTCCT 59.385 40.741 0.00 0.00 0.00 3.36
605 606 7.614974 AGTCTTATAATATACTCCCTCGGTTCC 59.385 40.741 0.00 0.00 0.00 3.62
606 607 8.578448 AGTCTTATAATATACTCCCTCGGTTC 57.422 38.462 0.00 0.00 0.00 3.62
607 608 8.804204 CAAGTCTTATAATATACTCCCTCGGTT 58.196 37.037 0.00 0.00 0.00 4.44
608 609 7.093858 GCAAGTCTTATAATATACTCCCTCGGT 60.094 40.741 0.00 0.00 0.00 4.69
609 610 7.122948 AGCAAGTCTTATAATATACTCCCTCGG 59.877 40.741 0.00 0.00 0.00 4.63
610 611 8.057536 AGCAAGTCTTATAATATACTCCCTCG 57.942 38.462 0.00 0.00 0.00 4.63
625 626 9.026121 ACTTAGACTGAGATTTAGCAAGTCTTA 57.974 33.333 8.76 0.09 36.66 2.10
626 627 7.902087 ACTTAGACTGAGATTTAGCAAGTCTT 58.098 34.615 8.76 0.00 36.66 3.01
627 628 7.475137 ACTTAGACTGAGATTTAGCAAGTCT 57.525 36.000 8.53 8.53 38.49 3.24
628 629 6.470877 CGACTTAGACTGAGATTTAGCAAGTC 59.529 42.308 0.47 0.00 37.22 3.01
629 630 6.326375 CGACTTAGACTGAGATTTAGCAAGT 58.674 40.000 0.47 0.00 0.00 3.16
630 631 5.231147 GCGACTTAGACTGAGATTTAGCAAG 59.769 44.000 0.47 0.00 0.00 4.01
631 632 5.103000 GCGACTTAGACTGAGATTTAGCAA 58.897 41.667 0.47 0.00 0.00 3.91
632 633 4.440250 GGCGACTTAGACTGAGATTTAGCA 60.440 45.833 0.47 0.00 0.00 3.49
633 634 4.045783 GGCGACTTAGACTGAGATTTAGC 58.954 47.826 0.47 0.00 0.00 3.09
634 635 4.612943 GGGCGACTTAGACTGAGATTTAG 58.387 47.826 0.47 0.00 0.00 1.85
635 636 3.066342 CGGGCGACTTAGACTGAGATTTA 59.934 47.826 0.47 0.00 0.00 1.40
636 637 2.159226 CGGGCGACTTAGACTGAGATTT 60.159 50.000 0.47 0.00 0.00 2.17
637 638 1.405821 CGGGCGACTTAGACTGAGATT 59.594 52.381 0.47 0.00 0.00 2.40
638 639 1.025812 CGGGCGACTTAGACTGAGAT 58.974 55.000 0.47 0.00 0.00 2.75
639 640 0.035725 TCGGGCGACTTAGACTGAGA 60.036 55.000 0.47 0.00 29.65 3.27
640 641 0.378962 CTCGGGCGACTTAGACTGAG 59.621 60.000 0.00 0.00 45.23 3.35
641 642 0.035725 TCTCGGGCGACTTAGACTGA 60.036 55.000 0.00 0.00 32.72 3.41
642 643 1.025812 ATCTCGGGCGACTTAGACTG 58.974 55.000 0.00 0.00 0.00 3.51
643 644 2.634815 TATCTCGGGCGACTTAGACT 57.365 50.000 0.00 0.00 0.00 3.24
644 645 4.379290 GGTTATATCTCGGGCGACTTAGAC 60.379 50.000 0.00 0.00 0.00 2.59
645 646 3.755378 GGTTATATCTCGGGCGACTTAGA 59.245 47.826 0.00 0.00 0.00 2.10
646 647 3.504906 TGGTTATATCTCGGGCGACTTAG 59.495 47.826 0.00 0.00 0.00 2.18
647 648 3.254166 GTGGTTATATCTCGGGCGACTTA 59.746 47.826 0.00 0.00 0.00 2.24
648 649 2.035576 GTGGTTATATCTCGGGCGACTT 59.964 50.000 0.00 0.00 0.00 3.01
649 650 1.612463 GTGGTTATATCTCGGGCGACT 59.388 52.381 0.00 0.00 0.00 4.18
650 651 1.338973 TGTGGTTATATCTCGGGCGAC 59.661 52.381 0.00 0.00 0.00 5.19
651 652 1.338973 GTGTGGTTATATCTCGGGCGA 59.661 52.381 0.00 0.00 0.00 5.54
652 653 1.779569 GTGTGGTTATATCTCGGGCG 58.220 55.000 0.00 0.00 0.00 6.13
653 654 1.338973 TCGTGTGGTTATATCTCGGGC 59.661 52.381 0.00 0.00 0.00 6.13
654 655 3.936372 ATCGTGTGGTTATATCTCGGG 57.064 47.619 0.00 0.00 0.00 5.14
655 656 6.866770 ACAATAATCGTGTGGTTATATCTCGG 59.133 38.462 0.00 0.00 0.00 4.63
656 657 7.869016 ACAATAATCGTGTGGTTATATCTCG 57.131 36.000 0.00 0.00 0.00 4.04
657 658 9.477484 AGAACAATAATCGTGTGGTTATATCTC 57.523 33.333 0.00 0.00 0.00 2.75
658 659 9.477484 GAGAACAATAATCGTGTGGTTATATCT 57.523 33.333 0.00 0.00 0.00 1.98
659 660 9.256477 TGAGAACAATAATCGTGTGGTTATATC 57.744 33.333 0.00 0.00 0.00 1.63
660 661 9.607988 TTGAGAACAATAATCGTGTGGTTATAT 57.392 29.630 0.00 0.00 0.00 0.86
661 662 8.875803 GTTGAGAACAATAATCGTGTGGTTATA 58.124 33.333 0.00 0.00 38.32 0.98
662 663 7.389330 TGTTGAGAACAATAATCGTGTGGTTAT 59.611 33.333 0.00 0.00 38.72 1.89
663 664 6.706716 TGTTGAGAACAATAATCGTGTGGTTA 59.293 34.615 0.00 0.00 38.72 2.85
664 665 5.529430 TGTTGAGAACAATAATCGTGTGGTT 59.471 36.000 0.00 0.00 38.72 3.67
665 666 5.060506 TGTTGAGAACAATAATCGTGTGGT 58.939 37.500 0.00 0.00 38.72 4.16
666 667 5.605564 TGTTGAGAACAATAATCGTGTGG 57.394 39.130 0.00 0.00 38.72 4.17
667 668 6.602179 ACATGTTGAGAACAATAATCGTGTG 58.398 36.000 0.00 0.00 45.86 3.82
668 669 6.801539 ACATGTTGAGAACAATAATCGTGT 57.198 33.333 0.00 0.00 45.86 4.49
669 670 8.390354 ACATACATGTTGAGAACAATAATCGTG 58.610 33.333 2.30 0.00 45.86 4.35
670 671 8.390354 CACATACATGTTGAGAACAATAATCGT 58.610 33.333 2.30 0.00 45.86 3.73
671 672 7.852454 CCACATACATGTTGAGAACAATAATCG 59.148 37.037 2.30 0.00 45.86 3.34
672 673 8.677300 ACCACATACATGTTGAGAACAATAATC 58.323 33.333 2.30 0.00 45.86 1.75
673 674 8.461222 CACCACATACATGTTGAGAACAATAAT 58.539 33.333 2.30 0.00 45.86 1.28
674 675 7.574779 GCACCACATACATGTTGAGAACAATAA 60.575 37.037 2.30 0.00 45.86 1.40
675 676 6.128035 GCACCACATACATGTTGAGAACAATA 60.128 38.462 2.30 0.00 45.86 1.90
676 677 5.335897 GCACCACATACATGTTGAGAACAAT 60.336 40.000 2.30 0.00 45.86 2.71
677 678 4.023279 GCACCACATACATGTTGAGAACAA 60.023 41.667 2.30 0.00 45.86 2.83
678 679 3.501828 GCACCACATACATGTTGAGAACA 59.498 43.478 2.30 0.00 46.94 3.18
679 680 3.501828 TGCACCACATACATGTTGAGAAC 59.498 43.478 2.30 0.00 39.39 3.01
680 681 3.501828 GTGCACCACATACATGTTGAGAA 59.498 43.478 5.22 0.00 39.39 2.87
681 682 3.073678 GTGCACCACATACATGTTGAGA 58.926 45.455 5.22 0.00 39.39 3.27
682 683 2.813172 TGTGCACCACATACATGTTGAG 59.187 45.455 15.69 1.27 39.62 3.02
683 684 2.551887 GTGTGCACCACATACATGTTGA 59.448 45.455 15.69 0.00 46.32 3.18
684 685 2.932498 GTGTGCACCACATACATGTTG 58.068 47.619 15.69 5.06 46.32 3.33
694 695 2.292103 AAATGTTGTGTGTGCACCAC 57.708 45.000 23.54 23.54 44.65 4.16
695 696 3.020274 AGTAAATGTTGTGTGTGCACCA 58.980 40.909 15.69 9.21 44.65 4.17
696 697 3.708563 AGTAAATGTTGTGTGTGCACC 57.291 42.857 15.69 6.37 44.65 5.01
697 698 5.418310 ACTAGTAAATGTTGTGTGTGCAC 57.582 39.130 10.75 10.75 45.44 4.57
698 699 6.443934 AAACTAGTAAATGTTGTGTGTGCA 57.556 33.333 0.00 0.00 0.00 4.57
699 700 6.970043 TCAAAACTAGTAAATGTTGTGTGTGC 59.030 34.615 0.00 0.00 34.15 4.57
700 701 8.903570 TTCAAAACTAGTAAATGTTGTGTGTG 57.096 30.769 0.00 0.00 34.15 3.82
714 715 8.141909 GGCAAAGGACTTTTATTCAAAACTAGT 58.858 33.333 0.00 0.00 30.52 2.57
715 716 7.598869 GGGCAAAGGACTTTTATTCAAAACTAG 59.401 37.037 0.00 0.00 30.52 2.57
721 722 3.580895 GGGGGCAAAGGACTTTTATTCAA 59.419 43.478 0.00 0.00 0.00 2.69
813 822 1.965754 ATTCGGGGCAGCAGAGAGAC 61.966 60.000 0.00 0.00 0.00 3.36
846 855 5.996513 TCGTAATTGTTTTGTGGTAGCCTTA 59.003 36.000 0.00 0.00 0.00 2.69
856 865 5.450826 GGTTCCACCTTCGTAATTGTTTTGT 60.451 40.000 0.00 0.00 34.73 2.83
904 914 2.815647 CGGCAGGGAGTTCTTCGC 60.816 66.667 0.00 0.00 38.95 4.70
936 948 3.551846 TGGAAACTTCTGAAAGGTGGTC 58.448 45.455 0.00 0.00 36.78 4.02
1018 1051 0.392336 TTGTGGAATGCTTTGGTGGC 59.608 50.000 0.00 0.00 0.00 5.01
1078 1116 2.108344 GATCTCGAGCTCGGTCGGTC 62.108 65.000 33.98 23.18 40.49 4.79
1079 1117 2.124653 ATCTCGAGCTCGGTCGGT 60.125 61.111 33.98 17.25 40.49 4.69
1464 1511 2.356313 CGTTCTCTGGCAGCACGT 60.356 61.111 19.38 0.00 0.00 4.49
1612 4967 4.683334 GGTTTGACGCGCACAGCC 62.683 66.667 5.73 9.59 44.76 4.85
1614 4969 2.748546 CTTCGGTTTGACGCGCACAG 62.749 60.000 5.73 0.00 0.00 3.66
1625 4980 1.139058 ACTCACACTCTGCTTCGGTTT 59.861 47.619 0.00 0.00 0.00 3.27
1628 4983 0.668706 CCACTCACACTCTGCTTCGG 60.669 60.000 0.00 0.00 0.00 4.30
1670 5100 0.243907 CACGACACACACCCTCTAGG 59.756 60.000 0.00 0.00 43.78 3.02
1671 5101 1.244816 TCACGACACACACCCTCTAG 58.755 55.000 0.00 0.00 0.00 2.43
1672 5102 1.544246 CATCACGACACACACCCTCTA 59.456 52.381 0.00 0.00 0.00 2.43
1684 5114 4.957971 ACGAAACATCAAATCATCACGAC 58.042 39.130 0.00 0.00 0.00 4.34
1685 5115 5.605564 AACGAAACATCAAATCATCACGA 57.394 34.783 0.00 0.00 0.00 4.35
1686 5116 7.044771 CCATTAACGAAACATCAAATCATCACG 60.045 37.037 0.00 0.00 0.00 4.35
1772 5233 6.142817 AGAAACGAACATCTTGGAATTTTCG 58.857 36.000 0.00 3.74 41.17 3.46
1778 5239 5.849510 TGAGTAGAAACGAACATCTTGGAA 58.150 37.500 0.00 0.00 0.00 3.53
1840 5313 4.690748 TGTTCTGCTCTTATCCAGTTTTCG 59.309 41.667 0.00 0.00 0.00 3.46
1873 5347 6.702716 AGTTCGTTTTCCACCTAATTTTGA 57.297 33.333 0.00 0.00 0.00 2.69
1899 5373 5.311265 TCACAATTCAGAAGCACTTCAGAT 58.689 37.500 12.65 1.23 41.84 2.90
1914 5388 9.252962 AGAACAAAATGATGAGTTTCACAATTC 57.747 29.630 0.00 0.00 0.00 2.17
1915 5389 9.603921 AAGAACAAAATGATGAGTTTCACAATT 57.396 25.926 0.00 0.00 0.00 2.32
1916 5390 9.037737 CAAGAACAAAATGATGAGTTTCACAAT 57.962 29.630 0.00 0.00 0.00 2.71
1917 5391 8.249638 TCAAGAACAAAATGATGAGTTTCACAA 58.750 29.630 0.00 0.00 0.00 3.33
1918 5392 7.770201 TCAAGAACAAAATGATGAGTTTCACA 58.230 30.769 0.00 0.00 0.00 3.58
1996 5470 1.877637 TGACGTAACACAGCATTGCT 58.122 45.000 5.03 5.03 40.77 3.91
2000 5474 4.783242 GTCATTTTGACGTAACACAGCAT 58.217 39.130 0.00 0.00 37.67 3.79
2012 5487 7.254852 TGTCTTTTGTACTTGGTCATTTTGAC 58.745 34.615 0.00 0.00 46.23 3.18
2013 5488 7.397892 TGTCTTTTGTACTTGGTCATTTTGA 57.602 32.000 0.00 0.00 0.00 2.69
2014 5489 9.743057 TTATGTCTTTTGTACTTGGTCATTTTG 57.257 29.630 0.00 0.00 0.00 2.44
2071 5546 4.260415 GGCTTTTACTCGCTAGAATCAAGC 60.260 45.833 0.00 0.66 36.60 4.01
2080 5555 0.179119 GCCTCGGCTTTTACTCGCTA 60.179 55.000 0.00 0.00 38.26 4.26
2082 5557 1.090052 ATGCCTCGGCTTTTACTCGC 61.090 55.000 9.65 0.00 42.51 5.03
2083 5558 1.062587 CAATGCCTCGGCTTTTACTCG 59.937 52.381 9.65 0.00 42.51 4.18
2113 5591 5.181622 GGTAATCGTGAAATTGGTGTGGTTA 59.818 40.000 0.00 0.00 0.00 2.85
2200 5678 1.721389 CGACTCTCCAATGTTGTGTCG 59.279 52.381 10.79 10.79 39.43 4.35
2561 6044 3.356290 AGGCACTGTTTATCATTGGTCC 58.644 45.455 0.00 0.00 37.18 4.46
2590 6073 1.462670 GTTCTCTCTTTGCCTTGCTCG 59.537 52.381 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.