Multiple sequence alignment - TraesCS4D01G145400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G145400 chr4D 100.000 3360 0 0 1 3360 134546507 134549866 0.000000e+00 6205.0
1 TraesCS4D01G145400 chr4D 78.661 239 26 14 2619 2855 353417693 353417908 5.850000e-28 135.0
2 TraesCS4D01G145400 chr4B 93.181 2009 67 21 1060 3052 193524274 193526228 0.000000e+00 2887.0
3 TraesCS4D01G145400 chr4B 96.558 581 18 2 1 579 184860208 184860788 0.000000e+00 961.0
4 TraesCS4D01G145400 chr4B 96.533 375 12 1 651 1025 193523591 193523964 1.320000e-173 619.0
5 TraesCS4D01G145400 chr4B 84.300 293 34 7 2564 2855 289622923 289623204 3.300000e-70 276.0
6 TraesCS4D01G145400 chr4A 93.574 1245 45 10 1811 3052 424372193 424370981 0.000000e+00 1823.0
7 TraesCS4D01G145400 chr4A 91.608 1275 61 25 605 1862 424373336 424372091 0.000000e+00 1720.0
8 TraesCS4D01G145400 chr3D 98.793 580 6 1 1 579 568439415 568438836 0.000000e+00 1031.0
9 TraesCS4D01G145400 chr3D 93.562 233 9 2 3058 3284 68431420 68431188 3.210000e-90 342.0
10 TraesCS4D01G145400 chr3D 87.119 295 12 12 3069 3356 68335017 68335292 9.050000e-81 311.0
11 TraesCS4D01G145400 chr6D 98.276 580 9 1 1 579 13045655 13045076 0.000000e+00 1014.0
12 TraesCS4D01G145400 chr6D 97.586 580 13 1 1 579 262194552 262193973 0.000000e+00 992.0
13 TraesCS4D01G145400 chr2D 98.273 579 8 2 1 578 58981569 58980992 0.000000e+00 1013.0
14 TraesCS4D01G145400 chr2D 84.429 578 87 3 2 578 430648443 430647868 1.750000e-157 566.0
15 TraesCS4D01G145400 chr2B 94.639 485 23 3 99 581 110418284 110418767 0.000000e+00 749.0
16 TraesCS4D01G145400 chrUn 95.924 368 11 3 221 586 81639834 81639469 8.030000e-166 593.0
17 TraesCS4D01G145400 chr7B 92.230 296 15 2 285 579 180048623 180048335 2.410000e-111 412.0
18 TraesCS4D01G145400 chr3B 78.698 676 86 25 2007 2658 670202325 670202966 6.750000e-107 398.0
19 TraesCS4D01G145400 chr3B 92.395 263 13 3 3058 3314 112947531 112947792 5.300000e-98 368.0
20 TraesCS4D01G145400 chr3B 93.133 233 9 3 3058 3284 112835159 112835390 5.370000e-88 335.0
21 TraesCS4D01G145400 chr3B 91.705 217 11 3 3074 3284 113298401 113298616 9.120000e-76 294.0
22 TraesCS4D01G145400 chr3B 89.224 232 18 3 3060 3284 112496348 112496579 1.970000e-72 283.0
23 TraesCS4D01G145400 chr3B 86.047 172 9 8 3128 3284 113487606 113487435 1.600000e-38 171.0
24 TraesCS4D01G145400 chr3B 95.455 44 2 0 3313 3356 113487355 113487312 1.670000e-08 71.3
25 TraesCS4D01G145400 chr6B 82.328 481 60 14 1929 2387 2168215 2167738 8.740000e-106 394.0
26 TraesCS4D01G145400 chr6A 80.896 424 55 14 2067 2483 583828871 583829275 9.050000e-81 311.0
27 TraesCS4D01G145400 chr3A 90.987 233 14 3 3058 3283 80409963 80410195 1.170000e-79 307.0
28 TraesCS4D01G145400 chr3A 97.959 49 1 0 3229 3277 80413809 80413761 5.970000e-13 86.1
29 TraesCS4D01G145400 chr1D 81.058 359 41 11 1929 2276 465082494 465082152 9.250000e-66 261.0
30 TraesCS4D01G145400 chr7D 85.246 122 15 1 2628 2746 46354311 46354190 4.550000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G145400 chr4D 134546507 134549866 3359 False 6205.0 6205 100.000 1 3360 1 chr4D.!!$F1 3359
1 TraesCS4D01G145400 chr4B 193523591 193526228 2637 False 1753.0 2887 94.857 651 3052 2 chr4B.!!$F3 2401
2 TraesCS4D01G145400 chr4B 184860208 184860788 580 False 961.0 961 96.558 1 579 1 chr4B.!!$F1 578
3 TraesCS4D01G145400 chr4A 424370981 424373336 2355 True 1771.5 1823 92.591 605 3052 2 chr4A.!!$R1 2447
4 TraesCS4D01G145400 chr3D 568438836 568439415 579 True 1031.0 1031 98.793 1 579 1 chr3D.!!$R2 578
5 TraesCS4D01G145400 chr6D 13045076 13045655 579 True 1014.0 1014 98.276 1 579 1 chr6D.!!$R1 578
6 TraesCS4D01G145400 chr6D 262193973 262194552 579 True 992.0 992 97.586 1 579 1 chr6D.!!$R2 578
7 TraesCS4D01G145400 chr2D 58980992 58981569 577 True 1013.0 1013 98.273 1 578 1 chr2D.!!$R1 577
8 TraesCS4D01G145400 chr2D 430647868 430648443 575 True 566.0 566 84.429 2 578 1 chr2D.!!$R2 576
9 TraesCS4D01G145400 chr3B 670202325 670202966 641 False 398.0 398 78.698 2007 2658 1 chr3B.!!$F5 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 733 1.068748 CCGTACCAGAATATCCGACCG 60.069 57.143 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2406 2693 0.595095 ACTAACGTGTCTGGACGGAC 59.405 55.0 4.34 4.34 43.84 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 5.452356 GGCAGCTTTATTACTTCTACGGGTA 60.452 44.000 0.00 0.00 0.00 3.69
602 603 4.361451 GCATAAAGTACATGCAGCAAGT 57.639 40.909 8.59 8.59 46.47 3.16
603 604 4.737054 GCATAAAGTACATGCAGCAAGTT 58.263 39.130 8.88 0.00 46.47 2.66
604 605 5.163513 GCATAAAGTACATGCAGCAAGTTT 58.836 37.500 8.88 6.13 46.47 2.66
605 606 5.634859 GCATAAAGTACATGCAGCAAGTTTT 59.365 36.000 8.88 7.08 46.47 2.43
606 607 6.146021 GCATAAAGTACATGCAGCAAGTTTTT 59.854 34.615 8.88 12.10 46.47 1.94
732 733 1.068748 CCGTACCAGAATATCCGACCG 60.069 57.143 0.00 0.00 0.00 4.79
819 820 1.892209 AACATCTGGGTCGTTCAACC 58.108 50.000 0.00 0.00 38.69 3.77
966 967 2.234168 AGAGCTCGTTAGGGTTTTCTCC 59.766 50.000 8.37 0.00 0.00 3.71
1056 1059 1.632018 CCCGCCTCTGTATTTCCCCA 61.632 60.000 0.00 0.00 0.00 4.96
1076 1352 2.962191 CACGGTTTTCGCGTCTTTTAAG 59.038 45.455 5.77 0.00 43.89 1.85
1087 1363 4.464112 GCGTCTTTTAAGCTTGTTTCGAT 58.536 39.130 9.86 0.00 0.00 3.59
1157 1433 5.070001 ACTAGCTAGATCTGATCGCTTTCT 58.930 41.667 27.45 12.81 30.39 2.52
1188 1464 1.454653 GTTTAGTCGTCGGTTGCTGAC 59.545 52.381 0.00 0.00 36.50 3.51
1275 1551 6.996879 GGGTTAGGACTTGGGTTTTATCTATC 59.003 42.308 0.00 0.00 0.00 2.08
1310 1586 5.359756 TCCTACGATGGATTTCACTGAATG 58.640 41.667 0.00 0.00 0.00 2.67
1317 1593 4.650734 TGGATTTCACTGAATGTGCTGTA 58.349 39.130 0.00 0.00 45.81 2.74
1400 1676 1.444553 CGTGCTCTGGGAAGTCGAC 60.445 63.158 7.70 7.70 0.00 4.20
1459 1735 2.936498 CGGTGCTTGGTTAGGTTATCTG 59.064 50.000 0.00 0.00 0.00 2.90
1636 1912 4.010667 TGGCGTGTTAGTCCTTGTTATT 57.989 40.909 0.00 0.00 0.00 1.40
1637 1913 5.149973 TGGCGTGTTAGTCCTTGTTATTA 57.850 39.130 0.00 0.00 0.00 0.98
1638 1914 5.736813 TGGCGTGTTAGTCCTTGTTATTAT 58.263 37.500 0.00 0.00 0.00 1.28
1764 2040 2.674796 AGATTACTGCTCGTTGGTCC 57.325 50.000 0.00 0.00 0.00 4.46
1772 2048 1.153628 CTCGTTGGTCCGGTGGATC 60.154 63.158 0.00 0.00 32.73 3.36
1793 2069 6.922957 GGATCTGCTTGTGTAAACAATTTCAA 59.077 34.615 0.00 0.00 0.00 2.69
1847 2123 5.907197 ATCAACCGTTCATATCTAAAGCG 57.093 39.130 0.00 0.00 0.00 4.68
1892 2168 8.777413 ACATGATTTATCAACCGTTCATATCTG 58.223 33.333 0.00 0.00 40.69 2.90
2145 2429 4.379290 GCTCTTTTTGATGCTCTTGACCTC 60.379 45.833 0.00 0.00 0.00 3.85
2182 2469 3.181450 ACTTGATGATAGTGCTAAGCCCC 60.181 47.826 0.00 0.00 0.00 5.80
2380 2667 1.462670 GTTCTCTCTTTGCCTTGCTCG 59.537 52.381 0.00 0.00 0.00 5.03
2409 2696 3.356290 AGGCACTGTTTATCATTGGTCC 58.644 45.455 0.00 0.00 37.18 4.46
2770 3084 1.721389 CGACTCTCCAATGTTGTGTCG 59.279 52.381 10.79 10.79 39.43 4.35
2857 3171 5.181622 GGTAATCGTGAAATTGGTGTGGTTA 59.818 40.000 0.00 0.00 0.00 2.85
2867 3207 4.657436 TTGGTGTGGTTATGTTTTGGTC 57.343 40.909 0.00 0.00 0.00 4.02
2868 3208 3.632333 TGGTGTGGTTATGTTTTGGTCA 58.368 40.909 0.00 0.00 0.00 4.02
2869 3209 4.023980 TGGTGTGGTTATGTTTTGGTCAA 58.976 39.130 0.00 0.00 0.00 3.18
2870 3210 4.651503 TGGTGTGGTTATGTTTTGGTCAAT 59.348 37.500 0.00 0.00 0.00 2.57
2871 3211 4.987912 GGTGTGGTTATGTTTTGGTCAATG 59.012 41.667 0.00 0.00 0.00 2.82
2872 3212 4.447389 GTGTGGTTATGTTTTGGTCAATGC 59.553 41.667 0.00 0.00 0.00 3.56
2873 3213 3.993736 GTGGTTATGTTTTGGTCAATGCC 59.006 43.478 0.00 0.00 0.00 4.40
2874 3214 3.900601 TGGTTATGTTTTGGTCAATGCCT 59.099 39.130 0.00 0.00 0.00 4.75
2875 3215 4.021544 TGGTTATGTTTTGGTCAATGCCTC 60.022 41.667 0.00 0.00 0.00 4.70
2876 3216 4.165779 GTTATGTTTTGGTCAATGCCTCG 58.834 43.478 0.00 0.00 0.00 4.63
2877 3217 0.958091 TGTTTTGGTCAATGCCTCGG 59.042 50.000 0.00 0.00 0.00 4.63
2878 3218 0.388520 GTTTTGGTCAATGCCTCGGC 60.389 55.000 0.00 0.00 42.35 5.54
2879 3219 0.539438 TTTTGGTCAATGCCTCGGCT 60.539 50.000 9.65 0.00 42.51 5.52
2880 3220 0.539438 TTTGGTCAATGCCTCGGCTT 60.539 50.000 9.65 0.00 42.51 4.35
2881 3221 0.539438 TTGGTCAATGCCTCGGCTTT 60.539 50.000 9.65 6.37 42.51 3.51
2882 3222 0.539438 TGGTCAATGCCTCGGCTTTT 60.539 50.000 9.65 0.46 42.51 2.27
2883 3223 1.271652 TGGTCAATGCCTCGGCTTTTA 60.272 47.619 9.65 0.00 42.51 1.52
2884 3224 1.132453 GGTCAATGCCTCGGCTTTTAC 59.868 52.381 9.65 10.25 42.51 2.01
2885 3225 2.084546 GTCAATGCCTCGGCTTTTACT 58.915 47.619 9.65 0.00 42.51 2.24
2886 3226 2.096013 GTCAATGCCTCGGCTTTTACTC 59.904 50.000 9.65 0.00 42.51 2.59
2887 3227 1.062587 CAATGCCTCGGCTTTTACTCG 59.937 52.381 9.65 0.00 42.51 4.18
2888 3228 1.090052 ATGCCTCGGCTTTTACTCGC 61.090 55.000 9.65 0.00 42.51 5.03
2889 3229 1.448013 GCCTCGGCTTTTACTCGCT 60.448 57.895 0.00 0.00 38.26 4.93
2890 3230 0.179119 GCCTCGGCTTTTACTCGCTA 60.179 55.000 0.00 0.00 38.26 4.26
2899 3239 4.260415 GGCTTTTACTCGCTAGAATCAAGC 60.260 45.833 0.00 0.66 36.60 4.01
2956 3296 9.743057 TTATGTCTTTTGTACTTGGTCATTTTG 57.257 29.630 0.00 0.00 0.00 2.44
2957 3297 7.397892 TGTCTTTTGTACTTGGTCATTTTGA 57.602 32.000 0.00 0.00 0.00 2.69
2958 3298 7.254852 TGTCTTTTGTACTTGGTCATTTTGAC 58.745 34.615 0.00 0.00 46.23 3.18
2970 3310 4.783242 GTCATTTTGACGTAACACAGCAT 58.217 39.130 0.00 0.00 37.67 3.79
2974 3314 1.877637 TGACGTAACACAGCATTGCT 58.122 45.000 5.03 5.03 40.77 3.91
3052 3392 7.770201 TCAAGAACAAAATGATGAGTTTCACA 58.230 30.769 0.00 0.00 0.00 3.58
3053 3393 8.249638 TCAAGAACAAAATGATGAGTTTCACAA 58.750 29.630 0.00 0.00 0.00 3.33
3054 3394 9.037737 CAAGAACAAAATGATGAGTTTCACAAT 57.962 29.630 0.00 0.00 0.00 2.71
3055 3395 9.603921 AAGAACAAAATGATGAGTTTCACAATT 57.396 25.926 0.00 0.00 0.00 2.32
3056 3396 9.252962 AGAACAAAATGATGAGTTTCACAATTC 57.747 29.630 0.00 0.00 0.00 2.17
3057 3397 8.945481 AACAAAATGATGAGTTTCACAATTCA 57.055 26.923 0.00 0.00 33.51 2.57
3058 3398 8.583810 ACAAAATGATGAGTTTCACAATTCAG 57.416 30.769 0.00 0.00 32.57 3.02
3059 3399 8.415553 ACAAAATGATGAGTTTCACAATTCAGA 58.584 29.630 0.00 0.00 32.57 3.27
3060 3400 9.251792 CAAAATGATGAGTTTCACAATTCAGAA 57.748 29.630 0.00 0.00 32.57 3.02
3061 3401 9.472361 AAAATGATGAGTTTCACAATTCAGAAG 57.528 29.630 0.00 0.00 32.57 2.85
3062 3402 6.005583 TGATGAGTTTCACAATTCAGAAGC 57.994 37.500 0.00 0.00 32.57 3.86
3063 3403 5.532032 TGATGAGTTTCACAATTCAGAAGCA 59.468 36.000 6.18 0.00 32.57 3.91
3064 3404 5.173774 TGAGTTTCACAATTCAGAAGCAC 57.826 39.130 6.18 1.75 0.00 4.40
3065 3405 4.883585 TGAGTTTCACAATTCAGAAGCACT 59.116 37.500 6.18 1.58 0.00 4.40
3066 3406 5.357878 TGAGTTTCACAATTCAGAAGCACTT 59.642 36.000 6.18 0.00 0.00 3.16
3067 3407 5.825507 AGTTTCACAATTCAGAAGCACTTC 58.174 37.500 2.04 2.04 39.78 3.01
3068 3408 5.357878 AGTTTCACAATTCAGAAGCACTTCA 59.642 36.000 12.65 0.00 41.84 3.02
3069 3409 5.428496 TTCACAATTCAGAAGCACTTCAG 57.572 39.130 12.65 4.91 41.84 3.02
3070 3410 4.707105 TCACAATTCAGAAGCACTTCAGA 58.293 39.130 12.65 7.23 41.84 3.27
3071 3411 5.311265 TCACAATTCAGAAGCACTTCAGAT 58.689 37.500 12.65 1.23 41.84 2.90
3072 3412 5.410746 TCACAATTCAGAAGCACTTCAGATC 59.589 40.000 12.65 0.00 41.84 2.75
3073 3413 5.411977 CACAATTCAGAAGCACTTCAGATCT 59.588 40.000 12.65 0.00 41.84 2.75
3074 3414 6.592994 CACAATTCAGAAGCACTTCAGATCTA 59.407 38.462 12.65 0.00 41.84 1.98
3075 3415 6.817641 ACAATTCAGAAGCACTTCAGATCTAG 59.182 38.462 12.65 0.00 41.84 2.43
3076 3416 5.991933 TTCAGAAGCACTTCAGATCTAGT 57.008 39.130 12.65 0.00 41.84 2.57
3077 3417 5.991933 TCAGAAGCACTTCAGATCTAGTT 57.008 39.130 12.65 0.00 41.84 2.24
3078 3418 5.960113 TCAGAAGCACTTCAGATCTAGTTC 58.040 41.667 12.65 0.00 41.84 3.01
3079 3419 4.797868 CAGAAGCACTTCAGATCTAGTTCG 59.202 45.833 12.65 0.00 41.84 3.95
3080 3420 4.461081 AGAAGCACTTCAGATCTAGTTCGT 59.539 41.667 12.65 0.00 41.84 3.85
3081 3421 4.792521 AGCACTTCAGATCTAGTTCGTT 57.207 40.909 0.00 0.00 0.00 3.85
3082 3422 5.140747 AGCACTTCAGATCTAGTTCGTTT 57.859 39.130 0.00 0.00 0.00 3.60
3083 3423 5.542779 AGCACTTCAGATCTAGTTCGTTTT 58.457 37.500 0.00 0.00 0.00 2.43
3084 3424 5.635700 AGCACTTCAGATCTAGTTCGTTTTC 59.364 40.000 0.00 0.00 0.00 2.29
3085 3425 5.163943 GCACTTCAGATCTAGTTCGTTTTCC 60.164 44.000 0.00 0.00 0.00 3.13
3086 3426 5.926542 CACTTCAGATCTAGTTCGTTTTCCA 59.073 40.000 0.00 0.00 0.00 3.53
3087 3427 5.927115 ACTTCAGATCTAGTTCGTTTTCCAC 59.073 40.000 0.00 0.00 0.00 4.02
3088 3428 4.817517 TCAGATCTAGTTCGTTTTCCACC 58.182 43.478 0.00 0.00 0.00 4.61
3089 3429 4.527038 TCAGATCTAGTTCGTTTTCCACCT 59.473 41.667 0.00 0.00 0.00 4.00
3090 3430 5.713389 TCAGATCTAGTTCGTTTTCCACCTA 59.287 40.000 0.00 0.00 0.00 3.08
3091 3431 6.209986 TCAGATCTAGTTCGTTTTCCACCTAA 59.790 38.462 0.00 0.00 0.00 2.69
3092 3432 7.042335 CAGATCTAGTTCGTTTTCCACCTAAT 58.958 38.462 0.00 0.00 0.00 1.73
3093 3433 7.549488 CAGATCTAGTTCGTTTTCCACCTAATT 59.451 37.037 0.00 0.00 0.00 1.40
3094 3434 8.101419 AGATCTAGTTCGTTTTCCACCTAATTT 58.899 33.333 0.00 0.00 0.00 1.82
3095 3435 8.631480 ATCTAGTTCGTTTTCCACCTAATTTT 57.369 30.769 0.00 0.00 0.00 1.82
3096 3436 7.867752 TCTAGTTCGTTTTCCACCTAATTTTG 58.132 34.615 0.00 0.00 0.00 2.44
3097 3437 6.702716 AGTTCGTTTTCCACCTAATTTTGA 57.297 33.333 0.00 0.00 0.00 2.69
3098 3438 7.284919 AGTTCGTTTTCCACCTAATTTTGAT 57.715 32.000 0.00 0.00 0.00 2.57
3099 3439 8.398878 AGTTCGTTTTCCACCTAATTTTGATA 57.601 30.769 0.00 0.00 0.00 2.15
3100 3440 9.020731 AGTTCGTTTTCCACCTAATTTTGATAT 57.979 29.630 0.00 0.00 0.00 1.63
3101 3441 9.634163 GTTCGTTTTCCACCTAATTTTGATATT 57.366 29.630 0.00 0.00 0.00 1.28
3102 3442 9.849166 TTCGTTTTCCACCTAATTTTGATATTC 57.151 29.630 0.00 0.00 0.00 1.75
3103 3443 8.463607 TCGTTTTCCACCTAATTTTGATATTCC 58.536 33.333 0.00 0.00 0.00 3.01
3104 3444 8.247562 CGTTTTCCACCTAATTTTGATATTCCA 58.752 33.333 0.00 0.00 0.00 3.53
3105 3445 9.366216 GTTTTCCACCTAATTTTGATATTCCAC 57.634 33.333 0.00 0.00 0.00 4.02
3106 3446 8.657387 TTTCCACCTAATTTTGATATTCCACA 57.343 30.769 0.00 0.00 0.00 4.17
3107 3447 8.837099 TTCCACCTAATTTTGATATTCCACAT 57.163 30.769 0.00 0.00 0.00 3.21
3108 3448 8.236585 TCCACCTAATTTTGATATTCCACATG 57.763 34.615 0.00 0.00 0.00 3.21
3109 3449 7.838696 TCCACCTAATTTTGATATTCCACATGT 59.161 33.333 0.00 0.00 0.00 3.21
3110 3450 8.477256 CCACCTAATTTTGATATTCCACATGTT 58.523 33.333 0.00 0.00 0.00 2.71
3111 3451 9.520204 CACCTAATTTTGATATTCCACATGTTC 57.480 33.333 0.00 0.00 0.00 3.18
3112 3452 9.479549 ACCTAATTTTGATATTCCACATGTTCT 57.520 29.630 0.00 0.00 0.00 3.01
3113 3453 9.740239 CCTAATTTTGATATTCCACATGTTCTG 57.260 33.333 0.00 0.00 0.00 3.02
3114 3454 9.241317 CTAATTTTGATATTCCACATGTTCTGC 57.759 33.333 0.00 0.00 0.00 4.26
3115 3455 6.839124 TTTTGATATTCCACATGTTCTGCT 57.161 33.333 0.00 0.00 0.00 4.24
3116 3456 6.441093 TTTGATATTCCACATGTTCTGCTC 57.559 37.500 0.00 0.00 0.00 4.26
3117 3457 5.363562 TGATATTCCACATGTTCTGCTCT 57.636 39.130 0.00 0.00 0.00 4.09
3118 3458 5.748402 TGATATTCCACATGTTCTGCTCTT 58.252 37.500 0.00 0.00 0.00 2.85
3119 3459 6.888105 TGATATTCCACATGTTCTGCTCTTA 58.112 36.000 0.00 0.00 0.00 2.10
3120 3460 7.512130 TGATATTCCACATGTTCTGCTCTTAT 58.488 34.615 0.00 0.00 0.00 1.73
3121 3461 7.658982 TGATATTCCACATGTTCTGCTCTTATC 59.341 37.037 0.00 0.00 0.00 1.75
3122 3462 4.142609 TCCACATGTTCTGCTCTTATCC 57.857 45.455 0.00 0.00 0.00 2.59
3123 3463 3.519107 TCCACATGTTCTGCTCTTATCCA 59.481 43.478 0.00 0.00 0.00 3.41
3124 3464 3.875727 CCACATGTTCTGCTCTTATCCAG 59.124 47.826 0.00 0.00 0.00 3.86
3125 3465 4.511527 CACATGTTCTGCTCTTATCCAGT 58.488 43.478 0.00 0.00 0.00 4.00
3126 3466 4.940046 CACATGTTCTGCTCTTATCCAGTT 59.060 41.667 0.00 0.00 0.00 3.16
3127 3467 5.413833 CACATGTTCTGCTCTTATCCAGTTT 59.586 40.000 0.00 0.00 0.00 2.66
3128 3468 6.006449 ACATGTTCTGCTCTTATCCAGTTTT 58.994 36.000 0.00 0.00 0.00 2.43
3129 3469 6.150140 ACATGTTCTGCTCTTATCCAGTTTTC 59.850 38.462 0.00 0.00 0.00 2.29
3130 3470 4.690748 TGTTCTGCTCTTATCCAGTTTTCG 59.309 41.667 0.00 0.00 0.00 3.46
3131 3471 3.861840 TCTGCTCTTATCCAGTTTTCGG 58.138 45.455 0.00 0.00 0.00 4.30
3132 3472 3.260884 TCTGCTCTTATCCAGTTTTCGGT 59.739 43.478 0.00 0.00 0.00 4.69
3133 3473 4.003648 CTGCTCTTATCCAGTTTTCGGTT 58.996 43.478 0.00 0.00 0.00 4.44
3134 3474 5.046878 TCTGCTCTTATCCAGTTTTCGGTTA 60.047 40.000 0.00 0.00 0.00 2.85
3135 3475 5.553123 TGCTCTTATCCAGTTTTCGGTTAA 58.447 37.500 0.00 0.00 0.00 2.01
3136 3476 5.642063 TGCTCTTATCCAGTTTTCGGTTAAG 59.358 40.000 0.00 0.00 37.24 1.85
3137 3477 5.642491 GCTCTTATCCAGTTTTCGGTTAAGT 59.358 40.000 0.00 0.00 37.21 2.24
3138 3478 6.148976 GCTCTTATCCAGTTTTCGGTTAAGTT 59.851 38.462 0.00 0.00 37.21 2.66
3139 3479 7.332678 GCTCTTATCCAGTTTTCGGTTAAGTTA 59.667 37.037 0.00 0.00 37.21 2.24
3140 3480 8.538409 TCTTATCCAGTTTTCGGTTAAGTTAC 57.462 34.615 0.00 0.00 37.21 2.50
3141 3481 8.149647 TCTTATCCAGTTTTCGGTTAAGTTACA 58.850 33.333 0.00 0.00 37.21 2.41
3142 3482 8.674263 TTATCCAGTTTTCGGTTAAGTTACAA 57.326 30.769 0.00 0.00 0.00 2.41
3143 3483 6.362210 TCCAGTTTTCGGTTAAGTTACAAC 57.638 37.500 0.00 0.00 0.00 3.32
3144 3484 5.879223 TCCAGTTTTCGGTTAAGTTACAACA 59.121 36.000 0.00 0.00 0.00 3.33
3145 3485 5.967088 CCAGTTTTCGGTTAAGTTACAACAC 59.033 40.000 0.00 0.00 0.00 3.32
3146 3486 6.403418 CCAGTTTTCGGTTAAGTTACAACACA 60.403 38.462 0.00 0.00 0.00 3.72
3147 3487 6.685403 CAGTTTTCGGTTAAGTTACAACACAG 59.315 38.462 0.00 0.00 0.00 3.66
3148 3488 4.799419 TTCGGTTAAGTTACAACACAGC 57.201 40.909 0.00 0.00 0.00 4.40
3149 3489 4.062677 TCGGTTAAGTTACAACACAGCT 57.937 40.909 0.00 0.00 0.00 4.24
3150 3490 4.444536 TCGGTTAAGTTACAACACAGCTT 58.555 39.130 0.00 0.00 0.00 3.74
3151 3491 4.877251 TCGGTTAAGTTACAACACAGCTTT 59.123 37.500 0.00 0.00 0.00 3.51
3152 3492 5.006941 TCGGTTAAGTTACAACACAGCTTTC 59.993 40.000 0.00 0.00 0.00 2.62
3153 3493 5.007332 CGGTTAAGTTACAACACAGCTTTCT 59.993 40.000 0.00 0.00 0.00 2.52
3154 3494 6.199393 GGTTAAGTTACAACACAGCTTTCTG 58.801 40.000 0.00 0.00 45.71 3.02
3155 3495 6.037830 GGTTAAGTTACAACACAGCTTTCTGA 59.962 38.462 0.00 0.00 42.95 3.27
3156 3496 7.414762 GGTTAAGTTACAACACAGCTTTCTGAA 60.415 37.037 0.00 0.00 42.95 3.02
3157 3497 6.699575 AAGTTACAACACAGCTTTCTGAAT 57.300 33.333 0.00 0.00 42.95 2.57
3158 3498 6.699575 AGTTACAACACAGCTTTCTGAATT 57.300 33.333 0.00 0.00 42.95 2.17
3159 3499 7.100458 AGTTACAACACAGCTTTCTGAATTT 57.900 32.000 0.00 0.00 42.95 1.82
3160 3500 7.547227 AGTTACAACACAGCTTTCTGAATTTT 58.453 30.769 0.00 0.00 42.95 1.82
3161 3501 7.702348 AGTTACAACACAGCTTTCTGAATTTTC 59.298 33.333 0.00 0.00 42.95 2.29
3162 3502 5.964758 ACAACACAGCTTTCTGAATTTTCA 58.035 33.333 0.00 0.00 42.95 2.69
3178 3518 8.731275 TGAATTTTCAGAACACTGAGTAGAAA 57.269 30.769 0.00 0.00 40.93 2.52
3179 3519 8.612619 TGAATTTTCAGAACACTGAGTAGAAAC 58.387 33.333 0.00 0.00 40.93 2.78
3180 3520 6.583912 TTTTCAGAACACTGAGTAGAAACG 57.416 37.500 0.00 0.00 40.93 3.60
3181 3521 5.509716 TTCAGAACACTGAGTAGAAACGA 57.490 39.130 0.00 0.00 40.93 3.85
3182 3522 5.509716 TCAGAACACTGAGTAGAAACGAA 57.490 39.130 0.00 0.00 36.00 3.85
3183 3523 5.279384 TCAGAACACTGAGTAGAAACGAAC 58.721 41.667 0.00 0.00 36.00 3.95
3184 3524 5.041287 CAGAACACTGAGTAGAAACGAACA 58.959 41.667 0.00 0.00 33.94 3.18
3185 3525 5.692204 CAGAACACTGAGTAGAAACGAACAT 59.308 40.000 0.00 0.00 33.94 2.71
3186 3526 5.921408 AGAACACTGAGTAGAAACGAACATC 59.079 40.000 0.00 0.00 0.00 3.06
3187 3527 5.455056 ACACTGAGTAGAAACGAACATCT 57.545 39.130 0.00 0.00 0.00 2.90
3188 3528 5.844004 ACACTGAGTAGAAACGAACATCTT 58.156 37.500 0.00 0.00 0.00 2.40
3189 3529 5.692204 ACACTGAGTAGAAACGAACATCTTG 59.308 40.000 0.00 0.00 0.00 3.02
3190 3530 5.119279 CACTGAGTAGAAACGAACATCTTGG 59.881 44.000 0.00 0.00 0.00 3.61
3191 3531 5.010719 ACTGAGTAGAAACGAACATCTTGGA 59.989 40.000 0.00 0.00 0.00 3.53
3192 3532 5.849510 TGAGTAGAAACGAACATCTTGGAA 58.150 37.500 0.00 0.00 0.00 3.53
3193 3533 6.464222 TGAGTAGAAACGAACATCTTGGAAT 58.536 36.000 0.00 0.00 0.00 3.01
3194 3534 6.934645 TGAGTAGAAACGAACATCTTGGAATT 59.065 34.615 0.00 0.00 0.00 2.17
3195 3535 7.444183 TGAGTAGAAACGAACATCTTGGAATTT 59.556 33.333 0.00 0.00 0.00 1.82
3196 3536 8.166422 AGTAGAAACGAACATCTTGGAATTTT 57.834 30.769 0.00 0.00 0.00 1.82
3197 3537 8.290325 AGTAGAAACGAACATCTTGGAATTTTC 58.710 33.333 0.00 0.00 0.00 2.29
3198 3538 6.142817 AGAAACGAACATCTTGGAATTTTCG 58.857 36.000 0.00 3.74 41.17 3.46
3199 3539 5.682943 AACGAACATCTTGGAATTTTCGA 57.317 34.783 10.62 0.00 38.44 3.71
3200 3540 5.880054 ACGAACATCTTGGAATTTTCGAT 57.120 34.783 10.62 0.00 38.44 3.59
3201 3541 5.631026 ACGAACATCTTGGAATTTTCGATG 58.369 37.500 10.62 8.37 38.44 3.84
3202 3542 5.030295 CGAACATCTTGGAATTTTCGATGG 58.970 41.667 0.00 0.00 38.44 3.51
3203 3543 5.163764 CGAACATCTTGGAATTTTCGATGGA 60.164 40.000 0.00 0.00 38.44 3.41
3204 3544 6.588719 AACATCTTGGAATTTTCGATGGAA 57.411 33.333 0.00 0.00 36.64 3.53
3205 3545 6.588719 ACATCTTGGAATTTTCGATGGAAA 57.411 33.333 0.00 0.00 40.29 3.13
3213 3553 3.311486 TTTTCGATGGAAAATGTGGCC 57.689 42.857 11.14 0.00 44.86 5.36
3214 3554 1.916506 TTCGATGGAAAATGTGGCCA 58.083 45.000 0.00 0.00 35.91 5.36
3215 3555 1.916506 TCGATGGAAAATGTGGCCAA 58.083 45.000 7.24 0.00 34.95 4.52
3216 3556 1.818060 TCGATGGAAAATGTGGCCAAG 59.182 47.619 7.24 0.00 34.95 3.61
3217 3557 1.818060 CGATGGAAAATGTGGCCAAGA 59.182 47.619 7.24 0.00 34.95 3.02
3218 3558 2.159338 CGATGGAAAATGTGGCCAAGAG 60.159 50.000 7.24 0.00 34.95 2.85
3219 3559 2.673775 TGGAAAATGTGGCCAAGAGA 57.326 45.000 7.24 0.00 0.00 3.10
3220 3560 2.956132 TGGAAAATGTGGCCAAGAGAA 58.044 42.857 7.24 0.00 0.00 2.87
3221 3561 3.509442 TGGAAAATGTGGCCAAGAGAAT 58.491 40.909 7.24 0.00 0.00 2.40
3222 3562 3.511146 TGGAAAATGTGGCCAAGAGAATC 59.489 43.478 7.24 1.66 0.00 2.52
3223 3563 3.428045 GGAAAATGTGGCCAAGAGAATCG 60.428 47.826 7.24 0.00 42.67 3.34
3224 3564 1.098050 AATGTGGCCAAGAGAATCGC 58.902 50.000 7.24 0.00 42.67 4.58
3225 3565 0.035152 ATGTGGCCAAGAGAATCGCA 60.035 50.000 7.24 0.00 42.67 5.10
3226 3566 0.035152 TGTGGCCAAGAGAATCGCAT 60.035 50.000 7.24 0.00 42.67 4.73
3227 3567 0.379669 GTGGCCAAGAGAATCGCATG 59.620 55.000 7.24 0.00 42.67 4.06
3228 3568 0.035152 TGGCCAAGAGAATCGCATGT 60.035 50.000 0.61 0.00 42.67 3.21
3229 3569 1.098050 GGCCAAGAGAATCGCATGTT 58.902 50.000 0.00 0.00 42.67 2.71
3230 3570 1.064654 GGCCAAGAGAATCGCATGTTC 59.935 52.381 0.00 0.00 42.67 3.18
3231 3571 1.739466 GCCAAGAGAATCGCATGTTCA 59.261 47.619 0.00 0.00 42.67 3.18
3232 3572 2.223203 GCCAAGAGAATCGCATGTTCAG 60.223 50.000 0.00 0.00 42.67 3.02
3233 3573 2.353889 CCAAGAGAATCGCATGTTCAGG 59.646 50.000 0.00 0.00 42.67 3.86
3234 3574 1.661341 AGAGAATCGCATGTTCAGGC 58.339 50.000 0.00 0.00 42.67 4.85
3251 3591 4.663444 CGAAGCCGGAGATCATCC 57.337 61.111 5.05 0.00 45.64 3.51
3252 3592 1.005630 CGAAGCCGGAGATCATCCC 60.006 63.158 5.05 0.00 46.50 3.85
3253 3593 1.373059 GAAGCCGGAGATCATCCCC 59.627 63.158 5.05 0.00 46.50 4.81
3254 3594 1.384502 AAGCCGGAGATCATCCCCA 60.385 57.895 5.05 0.00 46.50 4.96
3255 3595 0.769776 AAGCCGGAGATCATCCCCAT 60.770 55.000 5.05 0.00 46.50 4.00
3256 3596 0.769776 AGCCGGAGATCATCCCCATT 60.770 55.000 5.05 0.00 46.50 3.16
3257 3597 0.111253 GCCGGAGATCATCCCCATTT 59.889 55.000 5.05 0.00 46.50 2.32
3258 3598 1.884067 GCCGGAGATCATCCCCATTTC 60.884 57.143 5.05 0.00 46.50 2.17
3259 3599 1.271597 CCGGAGATCATCCCCATTTCC 60.272 57.143 0.00 0.00 46.50 3.13
3260 3600 1.421268 CGGAGATCATCCCCATTTCCA 59.579 52.381 0.00 0.00 46.50 3.53
3261 3601 2.040813 CGGAGATCATCCCCATTTCCAT 59.959 50.000 0.00 0.00 46.50 3.41
3262 3602 3.499202 CGGAGATCATCCCCATTTCCATT 60.499 47.826 0.00 0.00 46.50 3.16
3263 3603 4.263462 CGGAGATCATCCCCATTTCCATTA 60.263 45.833 0.00 0.00 46.50 1.90
3264 3604 5.644188 GGAGATCATCCCCATTTCCATTAA 58.356 41.667 0.00 0.00 43.01 1.40
3265 3605 5.478332 GGAGATCATCCCCATTTCCATTAAC 59.522 44.000 0.00 0.00 43.01 2.01
3266 3606 5.072741 AGATCATCCCCATTTCCATTAACG 58.927 41.667 0.00 0.00 0.00 3.18
3267 3607 4.511786 TCATCCCCATTTCCATTAACGA 57.488 40.909 0.00 0.00 0.00 3.85
3268 3608 4.861196 TCATCCCCATTTCCATTAACGAA 58.139 39.130 0.00 0.00 0.00 3.85
3269 3609 5.265191 TCATCCCCATTTCCATTAACGAAA 58.735 37.500 0.00 2.87 33.94 3.46
3270 3610 5.126384 TCATCCCCATTTCCATTAACGAAAC 59.874 40.000 0.00 0.00 32.30 2.78
3271 3611 4.408276 TCCCCATTTCCATTAACGAAACA 58.592 39.130 0.00 0.00 32.30 2.83
3272 3612 5.020132 TCCCCATTTCCATTAACGAAACAT 58.980 37.500 0.00 0.00 32.30 2.71
3273 3613 5.126384 TCCCCATTTCCATTAACGAAACATC 59.874 40.000 0.00 0.00 32.30 3.06
3274 3614 5.105554 CCCCATTTCCATTAACGAAACATCA 60.106 40.000 0.00 0.00 32.30 3.07
3275 3615 6.393990 CCCATTTCCATTAACGAAACATCAA 58.606 36.000 0.00 0.00 32.30 2.57
3276 3616 6.870965 CCCATTTCCATTAACGAAACATCAAA 59.129 34.615 0.00 0.00 32.30 2.69
3277 3617 7.548780 CCCATTTCCATTAACGAAACATCAAAT 59.451 33.333 0.00 0.00 32.30 2.32
3278 3618 8.594687 CCATTTCCATTAACGAAACATCAAATC 58.405 33.333 0.00 0.00 32.30 2.17
3279 3619 9.138062 CATTTCCATTAACGAAACATCAAATCA 57.862 29.630 0.00 0.00 32.30 2.57
3280 3620 9.874205 ATTTCCATTAACGAAACATCAAATCAT 57.126 25.926 0.00 0.00 32.30 2.45
3281 3621 8.909708 TTCCATTAACGAAACATCAAATCATC 57.090 30.769 0.00 0.00 0.00 2.92
3282 3622 8.049655 TCCATTAACGAAACATCAAATCATCA 57.950 30.769 0.00 0.00 0.00 3.07
3283 3623 7.967854 TCCATTAACGAAACATCAAATCATCAC 59.032 33.333 0.00 0.00 0.00 3.06
3284 3624 7.044771 CCATTAACGAAACATCAAATCATCACG 60.045 37.037 0.00 0.00 0.00 4.35
3285 3625 5.605564 AACGAAACATCAAATCATCACGA 57.394 34.783 0.00 0.00 0.00 4.35
3286 3626 4.957971 ACGAAACATCAAATCATCACGAC 58.042 39.130 0.00 0.00 0.00 4.34
3287 3627 4.450757 ACGAAACATCAAATCATCACGACA 59.549 37.500 0.00 0.00 0.00 4.35
3288 3628 4.783036 CGAAACATCAAATCATCACGACAC 59.217 41.667 0.00 0.00 0.00 3.67
3289 3629 5.614449 CGAAACATCAAATCATCACGACACA 60.614 40.000 0.00 0.00 0.00 3.72
3290 3630 4.668576 ACATCAAATCATCACGACACAC 57.331 40.909 0.00 0.00 0.00 3.82
3291 3631 4.064388 ACATCAAATCATCACGACACACA 58.936 39.130 0.00 0.00 0.00 3.72
3292 3632 4.083855 ACATCAAATCATCACGACACACAC 60.084 41.667 0.00 0.00 0.00 3.82
3293 3633 2.805671 TCAAATCATCACGACACACACC 59.194 45.455 0.00 0.00 0.00 4.16
3294 3634 1.808411 AATCATCACGACACACACCC 58.192 50.000 0.00 0.00 0.00 4.61
3295 3635 0.976641 ATCATCACGACACACACCCT 59.023 50.000 0.00 0.00 0.00 4.34
3296 3636 0.317160 TCATCACGACACACACCCTC 59.683 55.000 0.00 0.00 0.00 4.30
3297 3637 0.318441 CATCACGACACACACCCTCT 59.682 55.000 0.00 0.00 0.00 3.69
3298 3638 1.544246 CATCACGACACACACCCTCTA 59.456 52.381 0.00 0.00 0.00 2.43
3299 3639 1.244816 TCACGACACACACCCTCTAG 58.755 55.000 0.00 0.00 0.00 2.43
3300 3640 0.243907 CACGACACACACCCTCTAGG 59.756 60.000 0.00 0.00 43.78 3.02
3301 3641 1.215647 CGACACACACCCTCTAGGC 59.784 63.158 0.00 0.00 40.58 3.93
3302 3642 1.251527 CGACACACACCCTCTAGGCT 61.252 60.000 0.00 0.00 40.58 4.58
3303 3643 0.533032 GACACACACCCTCTAGGCTC 59.467 60.000 0.00 0.00 40.58 4.70
3304 3644 0.115349 ACACACACCCTCTAGGCTCT 59.885 55.000 0.00 0.00 40.58 4.09
3305 3645 1.358103 ACACACACCCTCTAGGCTCTA 59.642 52.381 0.00 0.00 40.58 2.43
3306 3646 2.028130 CACACACCCTCTAGGCTCTAG 58.972 57.143 0.00 3.55 40.58 2.43
3307 3647 1.036707 CACACCCTCTAGGCTCTAGC 58.963 60.000 0.00 0.00 40.58 3.42
3308 3648 0.631753 ACACCCTCTAGGCTCTAGCA 59.368 55.000 4.07 0.00 44.36 3.49
3309 3649 1.327303 CACCCTCTAGGCTCTAGCAG 58.673 60.000 4.07 0.00 44.36 4.24
3310 3650 1.133637 CACCCTCTAGGCTCTAGCAGA 60.134 57.143 4.07 0.00 44.36 4.26
3311 3651 1.786441 ACCCTCTAGGCTCTAGCAGAT 59.214 52.381 4.07 0.00 44.36 2.90
3312 3652 2.170166 CCCTCTAGGCTCTAGCAGATG 58.830 57.143 4.07 0.00 44.36 2.90
3313 3653 2.224992 CCCTCTAGGCTCTAGCAGATGA 60.225 54.545 4.07 0.00 44.36 2.92
3314 3654 3.495331 CCTCTAGGCTCTAGCAGATGAA 58.505 50.000 4.07 0.00 44.36 2.57
3315 3655 3.894427 CCTCTAGGCTCTAGCAGATGAAA 59.106 47.826 4.07 0.00 44.36 2.69
3316 3656 4.261994 CCTCTAGGCTCTAGCAGATGAAAC 60.262 50.000 4.07 0.00 44.36 2.78
3317 3657 4.541705 TCTAGGCTCTAGCAGATGAAACT 58.458 43.478 4.07 0.00 44.36 2.66
3318 3658 3.817709 AGGCTCTAGCAGATGAAACTC 57.182 47.619 4.07 0.00 44.36 3.01
3319 3659 2.100584 AGGCTCTAGCAGATGAAACTCG 59.899 50.000 4.07 0.00 44.36 4.18
3320 3660 1.857837 GCTCTAGCAGATGAAACTCGC 59.142 52.381 0.00 0.00 41.59 5.03
3321 3661 2.481104 GCTCTAGCAGATGAAACTCGCT 60.481 50.000 0.00 0.00 41.59 4.93
3322 3662 3.371168 CTCTAGCAGATGAAACTCGCTC 58.629 50.000 0.00 0.00 34.18 5.03
3323 3663 2.099921 TCTAGCAGATGAAACTCGCTCC 59.900 50.000 0.00 0.00 34.18 4.70
3324 3664 0.107945 AGCAGATGAAACTCGCTCCC 60.108 55.000 0.00 0.00 0.00 4.30
3325 3665 0.391661 GCAGATGAAACTCGCTCCCA 60.392 55.000 0.00 0.00 0.00 4.37
3326 3666 1.363744 CAGATGAAACTCGCTCCCAC 58.636 55.000 0.00 0.00 0.00 4.61
3327 3667 1.066573 CAGATGAAACTCGCTCCCACT 60.067 52.381 0.00 0.00 0.00 4.00
3328 3668 1.205893 AGATGAAACTCGCTCCCACTC 59.794 52.381 0.00 0.00 0.00 3.51
3329 3669 0.976641 ATGAAACTCGCTCCCACTCA 59.023 50.000 0.00 0.00 0.00 3.41
3330 3670 0.033504 TGAAACTCGCTCCCACTCAC 59.966 55.000 0.00 0.00 0.00 3.51
3331 3671 0.033504 GAAACTCGCTCCCACTCACA 59.966 55.000 0.00 0.00 0.00 3.58
3332 3672 0.249911 AAACTCGCTCCCACTCACAC 60.250 55.000 0.00 0.00 0.00 3.82
3333 3673 1.115930 AACTCGCTCCCACTCACACT 61.116 55.000 0.00 0.00 0.00 3.55
3334 3674 1.214062 CTCGCTCCCACTCACACTC 59.786 63.158 0.00 0.00 0.00 3.51
3335 3675 1.228583 TCGCTCCCACTCACACTCT 60.229 57.895 0.00 0.00 0.00 3.24
3336 3676 1.080230 CGCTCCCACTCACACTCTG 60.080 63.158 0.00 0.00 0.00 3.35
3337 3677 1.375268 GCTCCCACTCACACTCTGC 60.375 63.158 0.00 0.00 0.00 4.26
3338 3678 1.825281 GCTCCCACTCACACTCTGCT 61.825 60.000 0.00 0.00 0.00 4.24
3339 3679 0.683973 CTCCCACTCACACTCTGCTT 59.316 55.000 0.00 0.00 0.00 3.91
3340 3680 0.681733 TCCCACTCACACTCTGCTTC 59.318 55.000 0.00 0.00 0.00 3.86
3341 3681 0.668706 CCCACTCACACTCTGCTTCG 60.669 60.000 0.00 0.00 0.00 3.79
3342 3682 0.668706 CCACTCACACTCTGCTTCGG 60.669 60.000 0.00 0.00 0.00 4.30
3343 3683 0.032678 CACTCACACTCTGCTTCGGT 59.967 55.000 0.00 0.00 0.00 4.69
3344 3684 0.753262 ACTCACACTCTGCTTCGGTT 59.247 50.000 0.00 0.00 0.00 4.44
3345 3685 1.139058 ACTCACACTCTGCTTCGGTTT 59.861 47.619 0.00 0.00 0.00 3.27
3346 3686 1.528586 CTCACACTCTGCTTCGGTTTG 59.471 52.381 0.00 0.00 0.00 2.93
3347 3687 1.138069 TCACACTCTGCTTCGGTTTGA 59.862 47.619 0.00 0.00 0.00 2.69
3348 3688 1.261619 CACACTCTGCTTCGGTTTGAC 59.738 52.381 0.00 0.00 0.00 3.18
3349 3689 0.508641 CACTCTGCTTCGGTTTGACG 59.491 55.000 0.00 0.00 0.00 4.35
3350 3690 1.222115 ACTCTGCTTCGGTTTGACGC 61.222 55.000 0.00 0.00 41.96 5.19
3351 3691 2.170985 CTGCTTCGGTTTGACGCG 59.829 61.111 3.53 3.53 44.40 6.01
3352 3692 3.911155 CTGCTTCGGTTTGACGCGC 62.911 63.158 5.73 0.00 44.40 6.86
3353 3693 4.007940 GCTTCGGTTTGACGCGCA 62.008 61.111 5.73 1.71 31.69 6.09
3354 3694 2.127758 CTTCGGTTTGACGCGCAC 60.128 61.111 5.73 0.41 0.00 5.34
3355 3695 2.876879 CTTCGGTTTGACGCGCACA 61.877 57.895 5.73 3.80 0.00 4.57
3356 3696 2.748546 CTTCGGTTTGACGCGCACAG 62.749 60.000 5.73 0.00 0.00 3.66
3358 3698 4.683334 GGTTTGACGCGCACAGCC 62.683 66.667 5.73 9.59 44.76 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 0.105453 ATCATACCTCCTCCAGCCGT 60.105 55.000 0.00 0.00 0.00 5.68
582 583 7.642071 AAAAACTTGCTGCATGTACTTTATG 57.358 32.000 19.69 0.00 0.00 1.90
606 607 5.096169 CCAAATCGTACACACACACAAAAA 58.904 37.500 0.00 0.00 0.00 1.94
607 608 4.438880 CCCAAATCGTACACACACACAAAA 60.439 41.667 0.00 0.00 0.00 2.44
608 609 3.065510 CCCAAATCGTACACACACACAAA 59.934 43.478 0.00 0.00 0.00 2.83
609 610 2.614520 CCCAAATCGTACACACACACAA 59.385 45.455 0.00 0.00 0.00 3.33
610 611 2.214347 CCCAAATCGTACACACACACA 58.786 47.619 0.00 0.00 0.00 3.72
611 612 1.533731 CCCCAAATCGTACACACACAC 59.466 52.381 0.00 0.00 0.00 3.82
642 643 2.125512 CCGCTAGGTGTGCTGTCC 60.126 66.667 0.00 0.00 0.00 4.02
732 733 1.081376 CGTCTGATCGGGGTATCGC 60.081 63.158 0.62 0.00 0.00 4.58
819 820 2.159156 TCCGATCTGTGGGTATGTTTCG 60.159 50.000 0.00 0.00 0.00 3.46
966 967 3.686016 TGAGATTTCTCCCCCGAAAAAG 58.314 45.455 5.17 0.00 42.20 2.27
1056 1059 2.600556 GCTTAAAAGACGCGAAAACCGT 60.601 45.455 15.93 0.00 42.31 4.83
1087 1363 0.830648 CCAGTAGAAGCCCGATTCCA 59.169 55.000 0.00 0.00 0.00 3.53
1157 1433 3.426191 CGACGACTAAACAACCGATTCAA 59.574 43.478 0.00 0.00 0.00 2.69
1188 1464 0.179094 TACCAGTTAGCCAATCCGCG 60.179 55.000 0.00 0.00 0.00 6.46
1310 1586 2.159430 TGCGACACATCAAATACAGCAC 59.841 45.455 0.00 0.00 0.00 4.40
1317 1593 0.673333 TCGCCTGCGACACATCAAAT 60.673 50.000 10.61 0.00 44.01 2.32
1400 1676 3.994392 AGAATATAACGCTTACATGGCCG 59.006 43.478 0.00 0.00 0.00 6.13
1459 1735 2.481449 CCAACTAGCACGTGATCTACCC 60.481 54.545 22.23 0.00 0.00 3.69
1636 1912 3.595173 AGTGTCAACGCTGCACAATATA 58.405 40.909 13.27 0.00 35.04 0.86
1637 1913 2.426522 AGTGTCAACGCTGCACAATAT 58.573 42.857 13.27 0.00 35.04 1.28
1638 1914 1.877637 AGTGTCAACGCTGCACAATA 58.122 45.000 13.27 0.00 35.04 1.90
1753 2029 3.310860 ATCCACCGGACCAACGAGC 62.311 63.158 9.46 0.00 32.98 5.03
1756 2032 1.447838 CAGATCCACCGGACCAACG 60.448 63.158 9.46 0.00 32.98 4.10
1764 2040 2.093306 TTACACAAGCAGATCCACCG 57.907 50.000 0.00 0.00 0.00 4.94
1772 2048 7.489113 AGAAGTTGAAATTGTTTACACAAGCAG 59.511 33.333 0.43 0.00 46.25 4.24
1793 2069 7.193595 GTGTGTGCACAATAACTTTTAGAAGT 58.806 34.615 23.59 0.00 44.51 3.01
1810 2086 3.126686 CGGTTGATAATCATGTGTGTGCA 59.873 43.478 0.00 0.00 0.00 4.57
1847 2123 1.195448 GTGTGTATGTGCAGTGTGAGC 59.805 52.381 0.00 0.00 0.00 4.26
1892 2168 1.805869 ATGTGCAGTGTGAGAGCTTC 58.194 50.000 0.00 0.00 0.00 3.86
1948 2232 8.687301 CAAAACGATACAGGTCAAATAAACAAC 58.313 33.333 0.00 0.00 0.00 3.32
1949 2233 8.622157 TCAAAACGATACAGGTCAAATAAACAA 58.378 29.630 0.00 0.00 0.00 2.83
1950 2234 8.155821 TCAAAACGATACAGGTCAAATAAACA 57.844 30.769 0.00 0.00 0.00 2.83
1968 2252 3.004315 ACCCACTACAAGCATTCAAAACG 59.996 43.478 0.00 0.00 0.00 3.60
2406 2693 0.595095 ACTAACGTGTCTGGACGGAC 59.405 55.000 4.34 4.34 43.84 4.79
2409 2696 3.549299 AAGTACTAACGTGTCTGGACG 57.451 47.619 0.00 0.00 45.09 4.79
2770 3084 6.868622 AGACACTCAACATCTGATAGTTACC 58.131 40.000 0.00 0.00 32.14 2.85
2857 3171 1.545582 CCGAGGCATTGACCAAAACAT 59.454 47.619 0.00 0.00 0.00 2.71
2867 3207 1.062587 CGAGTAAAAGCCGAGGCATTG 59.937 52.381 17.18 0.00 44.88 2.82
2868 3208 1.369625 CGAGTAAAAGCCGAGGCATT 58.630 50.000 17.18 7.90 44.88 3.56
2869 3209 1.090052 GCGAGTAAAAGCCGAGGCAT 61.090 55.000 17.18 0.50 44.88 4.40
2870 3210 1.740296 GCGAGTAAAAGCCGAGGCA 60.740 57.895 17.18 0.00 44.88 4.75
2871 3211 0.179119 TAGCGAGTAAAAGCCGAGGC 60.179 55.000 5.89 5.89 42.33 4.70
2872 3212 1.404391 TCTAGCGAGTAAAAGCCGAGG 59.596 52.381 0.00 0.00 0.00 4.63
2873 3213 2.846039 TCTAGCGAGTAAAAGCCGAG 57.154 50.000 0.00 0.00 0.00 4.63
2874 3214 3.129813 TGATTCTAGCGAGTAAAAGCCGA 59.870 43.478 0.00 0.00 0.00 5.54
2875 3215 3.444916 TGATTCTAGCGAGTAAAAGCCG 58.555 45.455 0.00 0.00 0.00 5.52
2876 3216 4.260415 GCTTGATTCTAGCGAGTAAAAGCC 60.260 45.833 4.38 0.00 33.18 4.35
2877 3217 4.827601 GCTTGATTCTAGCGAGTAAAAGC 58.172 43.478 4.38 7.88 0.00 3.51
2887 3227 3.366719 GGCAAAATCGCTTGATTCTAGC 58.633 45.455 9.68 9.68 41.45 3.42
2888 3228 3.629398 AGGGCAAAATCGCTTGATTCTAG 59.371 43.478 0.00 0.00 41.45 2.43
2889 3229 3.378112 CAGGGCAAAATCGCTTGATTCTA 59.622 43.478 0.00 0.00 41.45 2.10
2890 3230 2.165030 CAGGGCAAAATCGCTTGATTCT 59.835 45.455 0.00 0.00 41.45 2.40
2899 3239 6.483307 TCTGATAGAATAACAGGGCAAAATCG 59.517 38.462 0.00 0.00 41.29 3.34
2932 3272 7.920682 GTCAAAATGACCAAGTACAAAAGACAT 59.079 33.333 0.00 0.00 41.37 3.06
2944 3284 5.163302 TGTGTTACGTCAAAATGACCAAG 57.837 39.130 0.00 0.00 44.20 3.61
2956 3296 2.222508 CGTAGCAATGCTGTGTTACGTC 60.223 50.000 19.25 0.00 46.92 4.34
2957 3297 1.724623 CGTAGCAATGCTGTGTTACGT 59.275 47.619 19.25 0.00 46.92 3.57
2958 3298 2.419565 CGTAGCAATGCTGTGTTACG 57.580 50.000 19.25 15.24 46.97 3.18
2959 3299 3.185594 TCAACGTAGCAATGCTGTGTTAC 59.814 43.478 19.25 6.51 40.10 2.50
2960 3300 3.394719 TCAACGTAGCAATGCTGTGTTA 58.605 40.909 19.25 8.28 40.10 2.41
2962 3302 1.800586 CTCAACGTAGCAATGCTGTGT 59.199 47.619 19.25 12.97 40.10 3.72
2963 3303 1.464687 GCTCAACGTAGCAATGCTGTG 60.465 52.381 19.25 12.29 42.30 3.66
2964 3304 0.798776 GCTCAACGTAGCAATGCTGT 59.201 50.000 19.25 5.06 42.30 4.40
2965 3305 3.593247 GCTCAACGTAGCAATGCTG 57.407 52.632 19.25 4.32 42.30 4.41
2974 3314 4.560136 TCATTTTGCTTTGCTCAACGTA 57.440 36.364 0.00 0.00 0.00 3.57
3022 3362 8.511465 AACTCATCATTTTGTTCTTGATTTCG 57.489 30.769 0.00 0.00 0.00 3.46
3052 3392 6.945218 ACTAGATCTGAAGTGCTTCTGAATT 58.055 36.000 20.00 14.81 45.88 2.17
3053 3393 6.543430 ACTAGATCTGAAGTGCTTCTGAAT 57.457 37.500 20.00 15.35 45.88 2.57
3054 3394 5.991933 ACTAGATCTGAAGTGCTTCTGAA 57.008 39.130 20.00 7.98 45.88 3.02
3055 3395 5.392487 CGAACTAGATCTGAAGTGCTTCTGA 60.392 44.000 18.93 18.93 46.47 3.27
3056 3396 4.797868 CGAACTAGATCTGAAGTGCTTCTG 59.202 45.833 5.18 11.75 40.14 3.02
3057 3397 4.461081 ACGAACTAGATCTGAAGTGCTTCT 59.539 41.667 5.18 0.00 40.14 2.85
3058 3398 4.739195 ACGAACTAGATCTGAAGTGCTTC 58.261 43.478 5.18 5.07 39.91 3.86
3059 3399 4.792521 ACGAACTAGATCTGAAGTGCTT 57.207 40.909 5.18 0.00 0.00 3.91
3060 3400 4.792521 AACGAACTAGATCTGAAGTGCT 57.207 40.909 5.18 0.00 0.00 4.40
3061 3401 5.163943 GGAAAACGAACTAGATCTGAAGTGC 60.164 44.000 5.18 0.00 0.00 4.40
3062 3402 5.926542 TGGAAAACGAACTAGATCTGAAGTG 59.073 40.000 5.18 0.00 0.00 3.16
3063 3403 5.927115 GTGGAAAACGAACTAGATCTGAAGT 59.073 40.000 5.18 0.00 0.00 3.01
3064 3404 5.348997 GGTGGAAAACGAACTAGATCTGAAG 59.651 44.000 5.18 0.00 0.00 3.02
3065 3405 5.011738 AGGTGGAAAACGAACTAGATCTGAA 59.988 40.000 5.18 0.00 0.00 3.02
3066 3406 4.527038 AGGTGGAAAACGAACTAGATCTGA 59.473 41.667 5.18 0.00 0.00 3.27
3067 3407 4.822026 AGGTGGAAAACGAACTAGATCTG 58.178 43.478 5.18 0.00 0.00 2.90
3068 3408 6.600882 TTAGGTGGAAAACGAACTAGATCT 57.399 37.500 0.00 0.00 0.00 2.75
3069 3409 7.845066 AATTAGGTGGAAAACGAACTAGATC 57.155 36.000 0.00 0.00 0.00 2.75
3070 3410 8.512138 CAAAATTAGGTGGAAAACGAACTAGAT 58.488 33.333 0.00 0.00 0.00 1.98
3071 3411 7.716123 TCAAAATTAGGTGGAAAACGAACTAGA 59.284 33.333 0.00 0.00 0.00 2.43
3072 3412 7.867752 TCAAAATTAGGTGGAAAACGAACTAG 58.132 34.615 0.00 0.00 0.00 2.57
3073 3413 7.804843 TCAAAATTAGGTGGAAAACGAACTA 57.195 32.000 0.00 0.00 0.00 2.24
3074 3414 6.702716 TCAAAATTAGGTGGAAAACGAACT 57.297 33.333 0.00 0.00 0.00 3.01
3075 3415 9.634163 AATATCAAAATTAGGTGGAAAACGAAC 57.366 29.630 0.00 0.00 0.00 3.95
3076 3416 9.849166 GAATATCAAAATTAGGTGGAAAACGAA 57.151 29.630 0.00 0.00 0.00 3.85
3077 3417 8.463607 GGAATATCAAAATTAGGTGGAAAACGA 58.536 33.333 0.00 0.00 0.00 3.85
3078 3418 8.247562 TGGAATATCAAAATTAGGTGGAAAACG 58.752 33.333 0.00 0.00 0.00 3.60
3079 3419 9.366216 GTGGAATATCAAAATTAGGTGGAAAAC 57.634 33.333 0.00 0.00 0.00 2.43
3080 3420 9.094578 TGTGGAATATCAAAATTAGGTGGAAAA 57.905 29.630 0.00 0.00 0.00 2.29
3081 3421 8.657387 TGTGGAATATCAAAATTAGGTGGAAA 57.343 30.769 0.00 0.00 0.00 3.13
3082 3422 8.694540 CATGTGGAATATCAAAATTAGGTGGAA 58.305 33.333 0.00 0.00 0.00 3.53
3083 3423 7.838696 ACATGTGGAATATCAAAATTAGGTGGA 59.161 33.333 0.00 0.00 0.00 4.02
3084 3424 8.010733 ACATGTGGAATATCAAAATTAGGTGG 57.989 34.615 0.00 0.00 0.00 4.61
3085 3425 9.520204 GAACATGTGGAATATCAAAATTAGGTG 57.480 33.333 0.00 0.00 0.00 4.00
3086 3426 9.479549 AGAACATGTGGAATATCAAAATTAGGT 57.520 29.630 0.00 0.00 0.00 3.08
3087 3427 9.740239 CAGAACATGTGGAATATCAAAATTAGG 57.260 33.333 0.00 0.00 0.00 2.69
3088 3428 9.241317 GCAGAACATGTGGAATATCAAAATTAG 57.759 33.333 0.00 0.00 0.00 1.73
3089 3429 8.970020 AGCAGAACATGTGGAATATCAAAATTA 58.030 29.630 0.00 0.00 0.00 1.40
3090 3430 7.844009 AGCAGAACATGTGGAATATCAAAATT 58.156 30.769 0.00 0.00 0.00 1.82
3091 3431 7.341256 AGAGCAGAACATGTGGAATATCAAAAT 59.659 33.333 0.00 0.00 0.00 1.82
3092 3432 6.660521 AGAGCAGAACATGTGGAATATCAAAA 59.339 34.615 0.00 0.00 0.00 2.44
3093 3433 6.182627 AGAGCAGAACATGTGGAATATCAAA 58.817 36.000 0.00 0.00 0.00 2.69
3094 3434 5.748402 AGAGCAGAACATGTGGAATATCAA 58.252 37.500 0.00 0.00 0.00 2.57
3095 3435 5.363562 AGAGCAGAACATGTGGAATATCA 57.636 39.130 0.00 0.00 0.00 2.15
3096 3436 7.118971 GGATAAGAGCAGAACATGTGGAATATC 59.881 40.741 0.00 0.00 0.00 1.63
3097 3437 6.939163 GGATAAGAGCAGAACATGTGGAATAT 59.061 38.462 0.00 0.00 0.00 1.28
3098 3438 6.126796 TGGATAAGAGCAGAACATGTGGAATA 60.127 38.462 0.00 0.00 0.00 1.75
3099 3439 5.128919 GGATAAGAGCAGAACATGTGGAAT 58.871 41.667 0.00 0.00 0.00 3.01
3100 3440 4.019411 TGGATAAGAGCAGAACATGTGGAA 60.019 41.667 0.00 0.00 0.00 3.53
3101 3441 3.519107 TGGATAAGAGCAGAACATGTGGA 59.481 43.478 0.00 0.00 0.00 4.02
3102 3442 3.875727 CTGGATAAGAGCAGAACATGTGG 59.124 47.826 0.00 0.00 0.00 4.17
3103 3443 4.511527 ACTGGATAAGAGCAGAACATGTG 58.488 43.478 0.00 0.00 0.00 3.21
3104 3444 4.833478 ACTGGATAAGAGCAGAACATGT 57.167 40.909 0.00 0.00 0.00 3.21
3105 3445 6.506500 AAAACTGGATAAGAGCAGAACATG 57.493 37.500 0.00 0.00 0.00 3.21
3106 3446 5.352569 CGAAAACTGGATAAGAGCAGAACAT 59.647 40.000 0.00 0.00 0.00 2.71
3107 3447 4.690748 CGAAAACTGGATAAGAGCAGAACA 59.309 41.667 0.00 0.00 0.00 3.18
3108 3448 4.093556 CCGAAAACTGGATAAGAGCAGAAC 59.906 45.833 0.00 0.00 0.00 3.01
3109 3449 4.253685 CCGAAAACTGGATAAGAGCAGAA 58.746 43.478 0.00 0.00 0.00 3.02
3110 3450 3.260884 ACCGAAAACTGGATAAGAGCAGA 59.739 43.478 0.00 0.00 0.00 4.26
3111 3451 3.600388 ACCGAAAACTGGATAAGAGCAG 58.400 45.455 0.00 0.00 0.00 4.24
3112 3452 3.695830 ACCGAAAACTGGATAAGAGCA 57.304 42.857 0.00 0.00 0.00 4.26
3113 3453 5.642491 ACTTAACCGAAAACTGGATAAGAGC 59.358 40.000 13.76 0.00 41.73 4.09
3114 3454 7.668525 AACTTAACCGAAAACTGGATAAGAG 57.331 36.000 13.76 0.00 41.73 2.85
3115 3455 8.149647 TGTAACTTAACCGAAAACTGGATAAGA 58.850 33.333 13.76 0.00 41.73 2.10
3116 3456 8.314143 TGTAACTTAACCGAAAACTGGATAAG 57.686 34.615 7.30 7.30 43.61 1.73
3117 3457 8.558700 GTTGTAACTTAACCGAAAACTGGATAA 58.441 33.333 0.00 0.00 0.00 1.75
3118 3458 7.714377 TGTTGTAACTTAACCGAAAACTGGATA 59.286 33.333 0.00 0.00 0.00 2.59
3119 3459 6.543100 TGTTGTAACTTAACCGAAAACTGGAT 59.457 34.615 0.00 0.00 0.00 3.41
3120 3460 5.879223 TGTTGTAACTTAACCGAAAACTGGA 59.121 36.000 0.00 0.00 0.00 3.86
3121 3461 5.967088 GTGTTGTAACTTAACCGAAAACTGG 59.033 40.000 0.00 0.00 0.00 4.00
3122 3462 6.544622 TGTGTTGTAACTTAACCGAAAACTG 58.455 36.000 0.00 0.00 0.00 3.16
3123 3463 6.676213 GCTGTGTTGTAACTTAACCGAAAACT 60.676 38.462 0.00 0.00 0.00 2.66
3124 3464 5.453266 GCTGTGTTGTAACTTAACCGAAAAC 59.547 40.000 0.00 0.00 0.00 2.43
3125 3465 5.354792 AGCTGTGTTGTAACTTAACCGAAAA 59.645 36.000 0.00 0.00 0.00 2.29
3126 3466 4.877251 AGCTGTGTTGTAACTTAACCGAAA 59.123 37.500 0.00 0.00 0.00 3.46
3127 3467 4.444536 AGCTGTGTTGTAACTTAACCGAA 58.555 39.130 0.00 0.00 0.00 4.30
3128 3468 4.062677 AGCTGTGTTGTAACTTAACCGA 57.937 40.909 0.00 0.00 0.00 4.69
3129 3469 4.806342 AAGCTGTGTTGTAACTTAACCG 57.194 40.909 0.00 0.00 0.00 4.44
3130 3470 6.037830 TCAGAAAGCTGTGTTGTAACTTAACC 59.962 38.462 0.00 0.00 42.84 2.85
3131 3471 7.011828 TCAGAAAGCTGTGTTGTAACTTAAC 57.988 36.000 0.00 0.00 42.84 2.01
3132 3472 7.618502 TTCAGAAAGCTGTGTTGTAACTTAA 57.381 32.000 0.00 0.00 42.84 1.85
3133 3473 7.801716 ATTCAGAAAGCTGTGTTGTAACTTA 57.198 32.000 0.00 0.00 42.84 2.24
3134 3474 6.699575 ATTCAGAAAGCTGTGTTGTAACTT 57.300 33.333 0.00 0.00 42.84 2.66
3135 3475 6.699575 AATTCAGAAAGCTGTGTTGTAACT 57.300 33.333 0.00 0.00 42.84 2.24
3136 3476 7.487829 TGAAAATTCAGAAAGCTGTGTTGTAAC 59.512 33.333 0.00 0.00 42.84 2.50
3137 3477 7.542890 TGAAAATTCAGAAAGCTGTGTTGTAA 58.457 30.769 0.00 0.00 42.84 2.41
3138 3478 7.094508 TGAAAATTCAGAAAGCTGTGTTGTA 57.905 32.000 0.00 0.00 42.84 2.41
3139 3479 5.964758 TGAAAATTCAGAAAGCTGTGTTGT 58.035 33.333 0.00 0.00 42.84 3.32
3160 3500 5.163591 TGTTCGTTTCTACTCAGTGTTCTGA 60.164 40.000 0.00 0.00 46.85 3.27
3161 3501 5.041287 TGTTCGTTTCTACTCAGTGTTCTG 58.959 41.667 0.00 0.00 42.54 3.02
3162 3502 5.258456 TGTTCGTTTCTACTCAGTGTTCT 57.742 39.130 0.00 0.00 0.00 3.01
3163 3503 5.921408 AGATGTTCGTTTCTACTCAGTGTTC 59.079 40.000 0.00 0.00 0.00 3.18
3164 3504 5.844004 AGATGTTCGTTTCTACTCAGTGTT 58.156 37.500 0.00 0.00 0.00 3.32
3165 3505 5.455056 AGATGTTCGTTTCTACTCAGTGT 57.545 39.130 0.00 0.00 0.00 3.55
3166 3506 5.119279 CCAAGATGTTCGTTTCTACTCAGTG 59.881 44.000 0.00 0.00 0.00 3.66
3167 3507 5.010719 TCCAAGATGTTCGTTTCTACTCAGT 59.989 40.000 0.00 0.00 0.00 3.41
3168 3508 5.470368 TCCAAGATGTTCGTTTCTACTCAG 58.530 41.667 0.00 0.00 0.00 3.35
3169 3509 5.462530 TCCAAGATGTTCGTTTCTACTCA 57.537 39.130 0.00 0.00 0.00 3.41
3170 3510 6.969828 ATTCCAAGATGTTCGTTTCTACTC 57.030 37.500 0.00 0.00 0.00 2.59
3171 3511 7.745620 AAATTCCAAGATGTTCGTTTCTACT 57.254 32.000 0.00 0.00 0.00 2.57
3172 3512 7.268447 CGAAAATTCCAAGATGTTCGTTTCTAC 59.732 37.037 2.81 0.00 40.30 2.59
3173 3513 7.171848 TCGAAAATTCCAAGATGTTCGTTTCTA 59.828 33.333 9.27 0.00 43.73 2.10
3174 3514 6.017440 TCGAAAATTCCAAGATGTTCGTTTCT 60.017 34.615 9.27 0.00 43.73 2.52
3175 3515 6.140110 TCGAAAATTCCAAGATGTTCGTTTC 58.860 36.000 9.27 0.00 43.73 2.78
3176 3516 6.067263 TCGAAAATTCCAAGATGTTCGTTT 57.933 33.333 9.27 0.00 43.73 3.60
3177 3517 5.682943 TCGAAAATTCCAAGATGTTCGTT 57.317 34.783 9.27 0.00 43.73 3.85
3178 3518 5.391950 CCATCGAAAATTCCAAGATGTTCGT 60.392 40.000 9.27 0.00 43.73 3.85
3179 3519 5.030295 CCATCGAAAATTCCAAGATGTTCG 58.970 41.667 4.29 4.29 44.34 3.95
3180 3520 6.194796 TCCATCGAAAATTCCAAGATGTTC 57.805 37.500 0.00 0.00 37.56 3.18
3181 3521 6.588719 TTCCATCGAAAATTCCAAGATGTT 57.411 33.333 0.00 0.00 37.56 2.71
3182 3522 6.588719 TTTCCATCGAAAATTCCAAGATGT 57.411 33.333 0.00 0.00 37.56 3.06
3194 3534 2.242926 TGGCCACATTTTCCATCGAAA 58.757 42.857 0.00 0.00 36.18 3.46
3195 3535 1.916506 TGGCCACATTTTCCATCGAA 58.083 45.000 0.00 0.00 0.00 3.71
3196 3536 1.818060 CTTGGCCACATTTTCCATCGA 59.182 47.619 3.88 0.00 0.00 3.59
3197 3537 1.818060 TCTTGGCCACATTTTCCATCG 59.182 47.619 3.88 0.00 0.00 3.84
3198 3538 3.091545 TCTCTTGGCCACATTTTCCATC 58.908 45.455 3.88 0.00 0.00 3.51
3199 3539 3.173953 TCTCTTGGCCACATTTTCCAT 57.826 42.857 3.88 0.00 0.00 3.41
3200 3540 2.673775 TCTCTTGGCCACATTTTCCA 57.326 45.000 3.88 0.00 0.00 3.53
3201 3541 3.428045 CGATTCTCTTGGCCACATTTTCC 60.428 47.826 3.88 0.00 0.00 3.13
3202 3542 3.762779 CGATTCTCTTGGCCACATTTTC 58.237 45.455 3.88 0.00 0.00 2.29
3203 3543 2.094545 GCGATTCTCTTGGCCACATTTT 60.095 45.455 3.88 0.00 0.00 1.82
3204 3544 1.474077 GCGATTCTCTTGGCCACATTT 59.526 47.619 3.88 0.00 0.00 2.32
3205 3545 1.098050 GCGATTCTCTTGGCCACATT 58.902 50.000 3.88 0.00 0.00 2.71
3206 3546 0.035152 TGCGATTCTCTTGGCCACAT 60.035 50.000 3.88 0.00 0.00 3.21
3207 3547 0.035152 ATGCGATTCTCTTGGCCACA 60.035 50.000 3.88 0.00 0.00 4.17
3208 3548 0.379669 CATGCGATTCTCTTGGCCAC 59.620 55.000 3.88 0.00 0.00 5.01
3209 3549 0.035152 ACATGCGATTCTCTTGGCCA 60.035 50.000 0.00 0.00 0.00 5.36
3210 3550 1.064654 GAACATGCGATTCTCTTGGCC 59.935 52.381 0.00 0.00 0.00 5.36
3211 3551 1.739466 TGAACATGCGATTCTCTTGGC 59.261 47.619 0.00 0.00 0.00 4.52
3212 3552 2.353889 CCTGAACATGCGATTCTCTTGG 59.646 50.000 0.00 0.00 0.00 3.61
3213 3553 2.223203 GCCTGAACATGCGATTCTCTTG 60.223 50.000 0.00 0.00 0.00 3.02
3214 3554 2.012673 GCCTGAACATGCGATTCTCTT 58.987 47.619 0.00 0.00 0.00 2.85
3215 3555 1.661341 GCCTGAACATGCGATTCTCT 58.339 50.000 0.00 0.00 0.00 3.10
3223 3563 2.486966 GGCTTCGCCTGAACATGC 59.513 61.111 0.00 0.00 46.69 4.06
3232 3572 1.666234 GATGATCTCCGGCTTCGCC 60.666 63.158 0.00 0.00 46.75 5.54
3233 3573 1.666234 GGATGATCTCCGGCTTCGC 60.666 63.158 0.00 0.00 33.29 4.70
3234 3574 1.005630 GGGATGATCTCCGGCTTCG 60.006 63.158 0.00 0.00 46.01 3.79
3235 3575 1.373059 GGGGATGATCTCCGGCTTC 59.627 63.158 0.00 0.00 46.01 3.86
3236 3576 0.769776 ATGGGGATGATCTCCGGCTT 60.770 55.000 6.89 0.00 40.96 4.35
3237 3577 0.769776 AATGGGGATGATCTCCGGCT 60.770 55.000 6.89 0.00 40.96 5.52
3238 3578 0.111253 AAATGGGGATGATCTCCGGC 59.889 55.000 6.89 0.00 40.96 6.13
3239 3579 1.271597 GGAAATGGGGATGATCTCCGG 60.272 57.143 6.89 0.00 40.96 5.14
3240 3580 1.421268 TGGAAATGGGGATGATCTCCG 59.579 52.381 6.89 0.00 40.96 4.63
3241 3581 3.822097 ATGGAAATGGGGATGATCTCC 57.178 47.619 3.84 3.84 44.11 3.71
3242 3582 5.182001 CGTTAATGGAAATGGGGATGATCTC 59.818 44.000 0.00 0.00 0.00 2.75
3243 3583 5.072741 CGTTAATGGAAATGGGGATGATCT 58.927 41.667 0.00 0.00 0.00 2.75
3244 3584 5.070001 TCGTTAATGGAAATGGGGATGATC 58.930 41.667 0.00 0.00 0.00 2.92
3245 3585 5.060427 TCGTTAATGGAAATGGGGATGAT 57.940 39.130 0.00 0.00 0.00 2.45
3246 3586 4.511786 TCGTTAATGGAAATGGGGATGA 57.488 40.909 0.00 0.00 0.00 2.92
3247 3587 5.105554 TGTTTCGTTAATGGAAATGGGGATG 60.106 40.000 7.61 0.00 35.97 3.51
3248 3588 5.020132 TGTTTCGTTAATGGAAATGGGGAT 58.980 37.500 7.61 0.00 35.97 3.85
3249 3589 4.408276 TGTTTCGTTAATGGAAATGGGGA 58.592 39.130 7.61 0.00 35.97 4.81
3250 3590 4.792521 TGTTTCGTTAATGGAAATGGGG 57.207 40.909 7.61 0.00 35.97 4.96
3251 3591 5.960113 TGATGTTTCGTTAATGGAAATGGG 58.040 37.500 7.61 0.00 35.97 4.00
3252 3592 7.881643 TTTGATGTTTCGTTAATGGAAATGG 57.118 32.000 7.61 0.00 35.97 3.16
3253 3593 9.138062 TGATTTGATGTTTCGTTAATGGAAATG 57.862 29.630 7.61 0.00 35.97 2.32
3254 3594 9.874205 ATGATTTGATGTTTCGTTAATGGAAAT 57.126 25.926 7.61 0.00 35.97 2.17
3255 3595 9.352784 GATGATTTGATGTTTCGTTAATGGAAA 57.647 29.630 0.00 0.00 0.00 3.13
3256 3596 8.518702 TGATGATTTGATGTTTCGTTAATGGAA 58.481 29.630 0.00 0.00 0.00 3.53
3257 3597 7.967854 GTGATGATTTGATGTTTCGTTAATGGA 59.032 33.333 0.00 0.00 0.00 3.41
3258 3598 7.044771 CGTGATGATTTGATGTTTCGTTAATGG 60.045 37.037 0.00 0.00 0.00 3.16
3259 3599 7.691877 TCGTGATGATTTGATGTTTCGTTAATG 59.308 33.333 0.00 0.00 0.00 1.90
3260 3600 7.692291 GTCGTGATGATTTGATGTTTCGTTAAT 59.308 33.333 0.00 0.00 0.00 1.40
3261 3601 7.012943 GTCGTGATGATTTGATGTTTCGTTAA 58.987 34.615 0.00 0.00 0.00 2.01
3262 3602 6.146347 TGTCGTGATGATTTGATGTTTCGTTA 59.854 34.615 0.00 0.00 0.00 3.18
3263 3603 5.049749 TGTCGTGATGATTTGATGTTTCGTT 60.050 36.000 0.00 0.00 0.00 3.85
3264 3604 4.450757 TGTCGTGATGATTTGATGTTTCGT 59.549 37.500 0.00 0.00 0.00 3.85
3265 3605 4.783036 GTGTCGTGATGATTTGATGTTTCG 59.217 41.667 0.00 0.00 0.00 3.46
3266 3606 5.565259 GTGTGTCGTGATGATTTGATGTTTC 59.435 40.000 0.00 0.00 0.00 2.78
3267 3607 5.008514 TGTGTGTCGTGATGATTTGATGTTT 59.991 36.000 0.00 0.00 0.00 2.83
3268 3608 4.514816 TGTGTGTCGTGATGATTTGATGTT 59.485 37.500 0.00 0.00 0.00 2.71
3269 3609 4.064388 TGTGTGTCGTGATGATTTGATGT 58.936 39.130 0.00 0.00 0.00 3.06
3270 3610 4.397382 GTGTGTGTCGTGATGATTTGATG 58.603 43.478 0.00 0.00 0.00 3.07
3271 3611 3.436704 GGTGTGTGTCGTGATGATTTGAT 59.563 43.478 0.00 0.00 0.00 2.57
3272 3612 2.805671 GGTGTGTGTCGTGATGATTTGA 59.194 45.455 0.00 0.00 0.00 2.69
3273 3613 2.095768 GGGTGTGTGTCGTGATGATTTG 60.096 50.000 0.00 0.00 0.00 2.32
3274 3614 2.151202 GGGTGTGTGTCGTGATGATTT 58.849 47.619 0.00 0.00 0.00 2.17
3275 3615 1.347707 AGGGTGTGTGTCGTGATGATT 59.652 47.619 0.00 0.00 0.00 2.57
3276 3616 0.976641 AGGGTGTGTGTCGTGATGAT 59.023 50.000 0.00 0.00 0.00 2.45
3277 3617 0.317160 GAGGGTGTGTGTCGTGATGA 59.683 55.000 0.00 0.00 0.00 2.92
3278 3618 0.318441 AGAGGGTGTGTGTCGTGATG 59.682 55.000 0.00 0.00 0.00 3.07
3279 3619 1.819288 CTAGAGGGTGTGTGTCGTGAT 59.181 52.381 0.00 0.00 0.00 3.06
3280 3620 1.244816 CTAGAGGGTGTGTGTCGTGA 58.755 55.000 0.00 0.00 0.00 4.35
3281 3621 0.243907 CCTAGAGGGTGTGTGTCGTG 59.756 60.000 0.00 0.00 0.00 4.35
3282 3622 1.533469 GCCTAGAGGGTGTGTGTCGT 61.533 60.000 0.00 0.00 37.43 4.34
3283 3623 1.215647 GCCTAGAGGGTGTGTGTCG 59.784 63.158 0.00 0.00 37.43 4.35
3284 3624 2.672414 AGCCTAGAGGGTGTGTGTC 58.328 57.895 0.00 0.00 45.50 3.67
3285 3625 4.977810 AGCCTAGAGGGTGTGTGT 57.022 55.556 0.00 0.00 45.50 3.72
3292 3632 2.170166 CATCTGCTAGAGCCTAGAGGG 58.830 57.143 11.96 3.25 41.18 4.30
3293 3633 3.153369 TCATCTGCTAGAGCCTAGAGG 57.847 52.381 11.96 0.00 41.18 3.69
3294 3634 4.584325 AGTTTCATCTGCTAGAGCCTAGAG 59.416 45.833 11.96 7.47 41.18 2.43
3295 3635 4.541705 AGTTTCATCTGCTAGAGCCTAGA 58.458 43.478 11.96 0.00 41.18 2.43
3296 3636 4.556501 CGAGTTTCATCTGCTAGAGCCTAG 60.557 50.000 0.00 5.20 41.18 3.02
3297 3637 3.316588 CGAGTTTCATCTGCTAGAGCCTA 59.683 47.826 0.00 0.00 41.18 3.93
3298 3638 2.100584 CGAGTTTCATCTGCTAGAGCCT 59.899 50.000 0.00 0.00 41.18 4.58
3299 3639 2.468831 CGAGTTTCATCTGCTAGAGCC 58.531 52.381 0.00 0.00 41.18 4.70
3300 3640 1.857837 GCGAGTTTCATCTGCTAGAGC 59.142 52.381 0.00 0.00 42.50 4.09
3301 3641 3.371168 GAGCGAGTTTCATCTGCTAGAG 58.629 50.000 0.00 0.00 35.73 2.43
3302 3642 2.099921 GGAGCGAGTTTCATCTGCTAGA 59.900 50.000 0.00 0.00 35.73 2.43
3303 3643 2.468831 GGAGCGAGTTTCATCTGCTAG 58.531 52.381 0.00 0.00 35.73 3.42
3304 3644 1.137086 GGGAGCGAGTTTCATCTGCTA 59.863 52.381 0.00 0.00 35.73 3.49
3305 3645 0.107945 GGGAGCGAGTTTCATCTGCT 60.108 55.000 0.00 0.00 38.89 4.24
3306 3646 0.391661 TGGGAGCGAGTTTCATCTGC 60.392 55.000 0.00 0.00 0.00 4.26
3307 3647 1.066573 AGTGGGAGCGAGTTTCATCTG 60.067 52.381 0.00 0.00 0.00 2.90
3308 3648 1.205893 GAGTGGGAGCGAGTTTCATCT 59.794 52.381 0.00 0.00 0.00 2.90
3309 3649 1.066858 TGAGTGGGAGCGAGTTTCATC 60.067 52.381 0.00 0.00 0.00 2.92
3310 3650 0.976641 TGAGTGGGAGCGAGTTTCAT 59.023 50.000 0.00 0.00 0.00 2.57
3311 3651 0.033504 GTGAGTGGGAGCGAGTTTCA 59.966 55.000 0.00 0.00 0.00 2.69
3312 3652 0.033504 TGTGAGTGGGAGCGAGTTTC 59.966 55.000 0.00 0.00 0.00 2.78
3313 3653 0.249911 GTGTGAGTGGGAGCGAGTTT 60.250 55.000 0.00 0.00 0.00 2.66
3314 3654 1.115930 AGTGTGAGTGGGAGCGAGTT 61.116 55.000 0.00 0.00 0.00 3.01
3315 3655 1.528292 GAGTGTGAGTGGGAGCGAGT 61.528 60.000 0.00 0.00 0.00 4.18
3316 3656 1.214062 GAGTGTGAGTGGGAGCGAG 59.786 63.158 0.00 0.00 0.00 5.03
3317 3657 1.228583 AGAGTGTGAGTGGGAGCGA 60.229 57.895 0.00 0.00 0.00 4.93
3318 3658 1.080230 CAGAGTGTGAGTGGGAGCG 60.080 63.158 0.00 0.00 0.00 5.03
3319 3659 1.375268 GCAGAGTGTGAGTGGGAGC 60.375 63.158 0.00 0.00 0.00 4.70
3320 3660 0.683973 AAGCAGAGTGTGAGTGGGAG 59.316 55.000 0.00 0.00 0.00 4.30
3321 3661 0.681733 GAAGCAGAGTGTGAGTGGGA 59.318 55.000 0.00 0.00 0.00 4.37
3322 3662 0.668706 CGAAGCAGAGTGTGAGTGGG 60.669 60.000 0.00 0.00 0.00 4.61
3323 3663 0.668706 CCGAAGCAGAGTGTGAGTGG 60.669 60.000 0.00 0.00 0.00 4.00
3324 3664 0.032678 ACCGAAGCAGAGTGTGAGTG 59.967 55.000 0.00 0.00 0.00 3.51
3325 3665 0.753262 AACCGAAGCAGAGTGTGAGT 59.247 50.000 0.00 0.00 0.00 3.41
3326 3666 1.528586 CAAACCGAAGCAGAGTGTGAG 59.471 52.381 0.00 0.00 0.00 3.51
3327 3667 1.138069 TCAAACCGAAGCAGAGTGTGA 59.862 47.619 0.00 0.00 0.00 3.58
3328 3668 1.261619 GTCAAACCGAAGCAGAGTGTG 59.738 52.381 0.00 0.00 0.00 3.82
3329 3669 1.583054 GTCAAACCGAAGCAGAGTGT 58.417 50.000 0.00 0.00 0.00 3.55
3330 3670 0.508641 CGTCAAACCGAAGCAGAGTG 59.491 55.000 0.00 0.00 0.00 3.51
3331 3671 2.900528 CGTCAAACCGAAGCAGAGT 58.099 52.632 0.00 0.00 0.00 3.24
3336 3676 4.007940 TGCGCGTCAAACCGAAGC 62.008 61.111 8.43 0.00 44.69 3.86
3337 3677 2.127758 GTGCGCGTCAAACCGAAG 60.128 61.111 8.43 0.00 0.00 3.79
3338 3678 2.876879 CTGTGCGCGTCAAACCGAA 61.877 57.895 8.43 0.00 0.00 4.30
3339 3679 3.334751 CTGTGCGCGTCAAACCGA 61.335 61.111 8.43 0.00 0.00 4.69
3341 3681 4.683334 GGCTGTGCGCGTCAAACC 62.683 66.667 8.43 8.45 40.44 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.